AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058130.t1 MTR_5g008050 98.535 273 4 0 1 273 1 273 0.0 547
MS.gene058130.t1 MTR_5g008050 98.611 216 3 0 1 216 1 216 4.14e-156 434
MS.gene058130.t1 MTR_3g098520 50.000 60 24 2 181 238 56 111 4.36e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058130.t1 AT5G17170 78.481 237 48 3 37 273 38 271 5.47e-130 369
MS.gene058130.t1 AT5G17170 71.687 166 45 2 36 201 37 200 4.28e-75 228
MS.gene058130.t1 AT5G51010 35.514 107 42 4 182 270 52 149 3.05e-11 60.8

Find 80 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGGACTTGTGGCTGGTTT+AGG 0.164794 5.4:+3204674 MS.gene058130:CDS
ACCTGGTCATCAAAAGATTT+TGG 0.172641 5.4:-3204204 None:intergenic
CCTCCAATTGGAGTTATTAT+TGG 0.179719 5.4:+3204656 MS.gene058130:CDS
TTGGACTTGTGGCTGGTTTA+GGG 0.187713 5.4:+3204675 MS.gene058130:CDS
CTTCTTTGGTGCTTGACATT+GGG 0.228557 5.4:-3204579 None:intergenic
GAAGCCAAAAGGGGTGTTTC+AGG 0.237048 5.4:+3202615 MS.gene058130:CDS
CGAGGAGGAGCAGGACGTTT+TGG 0.239182 5.4:-3203955 None:intergenic
CAACACCGCCACCATTCTTT+TGG 0.291572 5.4:-3202770 None:intergenic
CTATATACTAGCAGTTTCTT+TGG 0.295714 5.4:+3203109 MS.gene058130:CDS
GTTTCTTTGGAGATGAATTA+TGG 0.304420 5.4:+3203122 MS.gene058130:CDS
TACTCAGCAAACCTCTTCTT+TGG 0.321989 5.4:-3204593 None:intergenic
GGATCCTGAAACACCCCTTT+TGG 0.340292 5.4:-3202619 None:intergenic
GTCCTGCTCCTCCTCGCTTC+GGG 0.350568 5.4:+3203962 MS.gene058130:CDS
CGTCCTGCTCCTCCTCGCTT+CGG 0.368149 5.4:+3203961 MS.gene058130:CDS
TATCTTCTTTAGGCTGTTGA+AGG 0.389713 5.4:+3203040 MS.gene058130:intron
GGTGGAGGGTTGCCTCCAAT+TGG 0.394086 5.4:+3204644 MS.gene058130:CDS
GTGCTGATGTAGATGTTAAA+AGG 0.409204 5.4:+3203929 MS.gene058130:CDS
CTCACTTCATGAAGCCAAAA+GGG 0.411600 5.4:+3202605 MS.gene058130:CDS
TCTTCTTTGGTGCTTGACAT+TGG 0.416965 5.4:-3204580 None:intergenic
GTGGCTGGTTTAGGGGCTGT+TGG 0.432164 5.4:+3204683 MS.gene058130:CDS
ACCATGTCAGCTATGGTTGC+AGG 0.435247 5.4:+3202255 None:intergenic
AGTCCAATAATAACTCCAAT+TGG 0.436833 5.4:-3204659 None:intergenic
GCAAGAGCAGGGTTAAAGTC+AGG 0.440054 5.4:+3203076 MS.gene058130:CDS
GTTATTATTGGACTTGTGGC+TGG 0.444557 5.4:+3204668 MS.gene058130:CDS
CTCCCGAAGCGAGGAGGAGC+AGG 0.447605 5.4:-3203964 None:intergenic
CTGTCTACTTTGTTGTCAGC+AGG 0.450428 5.4:+3203197 MS.gene058130:CDS
GAGATCACTGCAAGAACTGC+TGG 0.452185 5.4:+3202693 MS.gene058130:CDS
GGAGGGAATGCAGCAAGAGC+AGG 0.457313 5.4:+3203064 MS.gene058130:CDS
CTTTAGGCTGTTGAAGGTGG+AGG 0.458505 5.4:+3203046 MS.gene058130:intron
TCTCACTTCATGAAGCCAAA+AGG 0.462437 5.4:+3202604 MS.gene058130:CDS
TTCTTTGGTGCTTGACATTG+GGG 0.463539 5.4:-3204578 None:intergenic
CTTCTTTAGGCTGTTGAAGG+TGG 0.466334 5.4:+3203043 MS.gene058130:intron
GACACTCACTCCTCCATGTC+AGG 0.476168 5.4:+3202347 MS.gene058130:CDS
AAGGCAAATGTGAGTAGCTC+TGG 0.479447 5.4:-3204157 None:intergenic
AAGCCACTTGGTCTCACCTT+AGG 0.480037 5.4:+3202747 MS.gene058130:CDS
GTTAACACAGGAAGAGCTAT+TGG 0.480695 5.4:+3204620 MS.gene058130:CDS
CTGCAGAAAACATCTTTGCT+AGG 0.481605 5.4:+3202579 MS.gene058130:intron
AAAATTGACTGACACTCAAA+AGG 0.485352 5.4:+3203987 MS.gene058130:CDS
ACAACAAAGTAGACAGAGTC+AGG 0.485537 5.4:-3203190 None:intergenic
CTCAAGTCTCTTTCTAGCAA+TGG 0.494877 5.4:-3202673 None:intergenic
TTCCTAGTTGACAACAAAAG+TGG 0.512954 5.4:+3202642 MS.gene058130:CDS
AACTGCTAGTATATAGAACT+TGG 0.513842 5.4:-3203102 None:intergenic
GGAAGAGCTATTGGTGGTGG+AGG 0.514930 5.4:+3204629 MS.gene058130:CDS
TGGACTTGTGGCTGGTTTAG+GGG 0.521175 5.4:+3204676 MS.gene058130:CDS
GTGAATCCAAGCTTATCTGC+TGG 0.535393 5.4:-3203145 None:intergenic
TGCAGAAAACATCTTTGCTA+GGG 0.536127 5.4:+3202580 MS.gene058130:intron
TGGGGACAACTATATGTGTC+CGG 0.538115 5.4:-3204560 None:intergenic
TTTAGGCTGTTGAAGGTGGA+GGG 0.538963 5.4:+3203047 MS.gene058130:intron
TTATGGCCAGCAGATAAGCT+TGG 0.539708 5.4:+3203139 MS.gene058130:CDS
CCAATAATAACTCCAATTGG+AGG 0.544692 5.4:-3204656 None:intergenic
ACAGGAAGAGCTATTGGTGG+TGG 0.551544 5.4:+3204626 MS.gene058130:CDS
ACAAGGAACCATGTCAGCTA+TGG 0.558535 5.4:+3202248 None:intergenic
TGGAGTTATTATTGGACTTG+TGG 0.561374 5.4:+3204664 MS.gene058130:CDS
TTCAAAGACAATTGAAGCTG+AGG 0.563353 5.4:+3202719 MS.gene058130:CDS
CCTTGTGGTGAAAGTGGCAG+AGG 0.564639 5.4:-3202283 None:intergenic
CAAGAGCAGGGTTAAAGTCA+GGG 0.567341 5.4:+3203077 MS.gene058130:CDS
CTCACCTTAGGCCAAAAGAA+TGG 0.568349 5.4:+3202759 MS.gene058130:CDS
GCTGAGGTTGACAAGCCACT+TGG 0.570324 5.4:+3202735 MS.gene058130:CDS
AACGGTACCTGTACCTGACA+TGG 0.581994 5.4:-3202360 None:intergenic
GTTACTCCTTGTGGTGAAAG+TGG 0.585891 5.4:-3202289 None:intergenic
ACCTGCAACCATAGCTGACA+TGG 0.586903 5.4:-3202256 None:intergenic
AATGTCAAGCACCAAAGAAG+AGG 0.589836 5.4:+3204582 MS.gene058130:CDS
GATGGAGTGGTTACTCCTTG+TGG 0.593369 5.4:-3202298 None:intergenic
AAGTCTCTTTCTAGCAATGG+AGG 0.597338 5.4:-3202670 None:intergenic
AAGAGCAGGGTTAAAGTCAG+GGG 0.598127 5.4:+3203078 MS.gene058130:CDS
TGGCCTAAGGTGAGACCAAG+TGG 0.607786 5.4:-3202750 None:intergenic
TGTGGTGAAAGTGGCAGAGG+AGG 0.609801 5.4:-3202280 None:intergenic
AGTATATGTATCCACAGTCA+AGG 0.610259 5.4:-3204176 None:intergenic
ACATGGAGGAGTGAGTGTCT+TGG 0.612341 5.4:-3202343 None:intergenic
GAGGGAATGCAGCAAGAGCA+GGG 0.612440 5.4:+3203065 MS.gene058130:CDS
GAAGAGCTATTGGTGGTGGA+GGG 0.622209 5.4:+3204630 MS.gene058130:CDS
GCTGAGTATGATGTTAACAC+AGG 0.623493 5.4:+3204608 MS.gene058130:CDS
TTAGGCCAAAAGAATGGTGG+CGG 0.624691 5.4:+3202765 MS.gene058130:CDS
ACTCACATTTGCCTTGACTG+TGG 0.627650 5.4:+3204165 MS.gene058130:CDS
CCTCTGCCACTTTCACCACA+AGG 0.635741 5.4:+3202283 MS.gene058130:CDS
TCACTTCATGAAGCCAAAAG+GGG 0.637786 5.4:+3202606 MS.gene058130:CDS
GGAGGAGTGAGTGTCTTGGA+AGG 0.640900 5.4:-3202339 None:intergenic
AACACAGGAAGAGCTATTGG+TGG 0.646702 5.4:+3204623 MS.gene058130:CDS
ACCTTAGGCCAAAAGAATGG+TGG 0.660294 5.4:+3202762 MS.gene058130:CDS
GGTACCTGTACCTGACATGG+AGG 0.738019 5.4:-3202357 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAATATACATGTT+GGG - chr5.4:3204327-3204346 None:intergenic 10.0%
!! AAATTGAATAAAATTTATGT+AGG + chr5.4:3203439-3203458 MS.gene058130:intron 10.0%
!! AATTGAATAAAATTTATGTA+GGG + chr5.4:3203440-3203459 MS.gene058130:intron 10.0%
!! TAAAAAAAAAATATACATGT+TGG - chr5.4:3204328-3204347 None:intergenic 10.0%
!!! GATTAAATTTGAAATTTTAT+AGG - chr5.4:3203326-3203345 None:intergenic 10.0%
!! AATAAGATATAGAAAATTGA+TGG + chr5.4:3203614-3203633 MS.gene058130:intron 15.0%
!! AATGAAAACATTGAATTAAT+GGG - chr5.4:3202824-3202843 None:intergenic 15.0%
!! TGTGAAAATTAATAAAAGTA+GGG + chr5.4:3203413-3203432 MS.gene058130:intron 15.0%
!!! TAAACTTTTTATATATGTGA+TGG - chr5.4:3204234-3204253 None:intergenic 15.0%
!! AACCATTCAATTATGTAAAA+TGG - chr5.4:3204106-3204125 None:intergenic 20.0%
!! CAATGAAAACATTGAATTAA+TGG - chr5.4:3202825-3202844 None:intergenic 20.0%
!! CTGTGAAAATTAATAAAAGT+AGG + chr5.4:3203412-3203431 MS.gene058130:intron 20.0%
!!! AGATGATTTTAGATTAAAGT+TGG + chr5.4:3204485-3204504 MS.gene058130:intron 20.0%
!!! ATTTTGTAGCAATAACAATA+AGG - chr5.4:3203523-3203542 None:intergenic 20.0%
!!! CATTAATTCAATGTTTTCAT+TGG + chr5.4:3202823-3202842 MS.gene058130:intron 20.0%
!!! TTGTTCAATTTGATTTCATA+AGG + chr5.4:3203358-3203377 MS.gene058130:intron 20.0%
!!! TTTTGTAGCAATAACAATAA+GGG - chr5.4:3203522-3203541 None:intergenic 20.0%
! AAGTAACTGATAAACAGAAT+AGG - chr5.4:3203852-3203871 None:intergenic 25.0%
! ACAAAAACATGAAAATAGTC+AGG - chr5.4:3203897-3203916 None:intergenic 25.0%
! ATATAAAAGATAAAGCCTCT+TGG - chr5.4:3204271-3204290 None:intergenic 25.0%
! ATCATTTGAATTCAACTAGT+TGG + chr5.4:3202496-3202515 MS.gene058130:intron 25.0%
! ATTTCACCACTATATATACA+AGG - chr5.4:3203578-3203597 None:intergenic 25.0%
! GATGACAAATAAATACTACT+AGG - chr5.4:3204069-3204088 None:intergenic 25.0%
! TAATCATGCAAAGAAAAGAA+CGG - chr5.4:3202381-3202400 None:intergenic 25.0%
! TGTATATATAGTGGTGAAAT+GGG + chr5.4:3203578-3203597 MS.gene058130:intron 25.0%
! TTAAAATGTCTGACATGTAT+TGG + chr5.4:3204345-3204364 MS.gene058130:intron 25.0%
! TTGTATATATAGTGGTGAAA+TGG + chr5.4:3203577-3203596 MS.gene058130:intron 25.0%
!! GTCCATTTTACATAATTGAA+TGG + chr5.4:3204101-3204120 MS.gene058130:intron 25.0%
!! TTTTCTTTGCATGATTACTT+CGG + chr5.4:3202384-3202403 MS.gene058130:intron 25.0%
!!! TTCATGTTTTTGTTATGAAG+AGG + chr5.4:3203904-3203923 MS.gene058130:intron 25.0%
AAAATTGACTGACACTCAAA+AGG + chr5.4:3203987-3204006 MS.gene058130:CDS 30.0%
AAAGTTGGATTATCAACATC+TGG + chr5.4:3204500-3204519 MS.gene058130:intron 30.0%
AACTGATGCAATTAAGGAAA+TGG - chr5.4:3203255-3203274 None:intergenic 30.0%
AACTGCTAGTATATAGAACT+TGG - chr5.4:3203105-3203124 None:intergenic 30.0%
AATTCAACTAGTTGGTTAGT+TGG + chr5.4:3202504-3202523 MS.gene058130:intron 30.0%
ACACTACCTTGTATATATAG+TGG + chr5.4:3203569-3203588 MS.gene058130:intron 30.0%
ACCTAAAAATAATTGCCAAG+AGG + chr5.4:3204253-3204272 MS.gene058130:intron 30.0%
AGATGCGTATTATCTTCTTT+AGG + chr5.4:3203030-3203049 MS.gene058130:intron 30.0%
AGTCCAATAATAACTCCAAT+TGG - chr5.4:3204662-3204681 None:intergenic 30.0%
CTATATACTAGCAGTTTCTT+TGG + chr5.4:3203109-3203128 MS.gene058130:CDS 30.0%
GAACAAAGTTTAGTTGCAAA+AGG - chr5.4:3203233-3203252 None:intergenic 30.0%
TGAAATGTAACCATATGTGT+CGG - chr5.4:3202894-3202913 None:intergenic 30.0%
TGGTAAGACTGAAATAAGTT+CGG + chr5.4:3203634-3203653 MS.gene058130:intron 30.0%
! GCAAGAATCGTTATTCATTT+TGG + chr5.4:3204009-3204028 MS.gene058130:intron 30.0%
! GTTTCTTTGGAGATGAATTA+TGG + chr5.4:3203122-3203141 MS.gene058130:CDS 30.0%
!! ATGTTTTTGTTATGAAGAGG+TGG + chr5.4:3203907-3203926 MS.gene058130:intron 30.0%
!!! GAAAAGGTCGTAGTTTTATA+GGG + chr5.4:3203471-3203490 MS.gene058130:intron 30.0%
!!! GACATAGGTTAGTTTTTGTT+GGG + chr5.4:3203283-3203302 MS.gene058130:intron 30.0%
!!! TGAAAAGGTCGTAGTTTTAT+AGG + chr5.4:3203470-3203489 MS.gene058130:intron 30.0%
!!! TGACATAGGTTAGTTTTTGT+TGG + chr5.4:3203282-3203301 MS.gene058130:intron 30.0%
!!! TTTTTTCTCTCTCTTTCACA+AGG - chr5.4:3203714-3203733 None:intergenic 30.0%
AAGACTGAAATAAGTTCGGA+TGG + chr5.4:3203638-3203657 MS.gene058130:intron 35.0%
AGTATATGTATCCACAGTCA+AGG - chr5.4:3204179-3204198 None:intergenic 35.0%
ATATACAAGGTAGTGTTGCA+AGG - chr5.4:3203565-3203584 None:intergenic 35.0%
ATGTAGGGACTAAACTGAAA+AGG + chr5.4:3203455-3203474 MS.gene058130:intron 35.0%
ATTTCATAAGGACTAAACGC+AGG + chr5.4:3203370-3203389 MS.gene058130:intron 35.0%
CAACAGAACTGATGCAATTA+AGG - chr5.4:3203261-3203280 None:intergenic 35.0%
CCAATAATAACTCCAATTGG+AGG - chr5.4:3204659-3204678 None:intergenic 35.0%
CCTCCAATTGGAGTTATTAT+TGG + chr5.4:3204656-3204675 MS.gene058130:CDS 35.0%
GCAACTTGTAACATTGTGAT+TGG + chr5.4:3203736-3203755 MS.gene058130:intron 35.0%
TATACAAGGTAGTGTTGCAA+GGG - chr5.4:3203564-3203583 None:intergenic 35.0%
TATCAGACACTCACTTATGT+CGG - chr5.4:3202866-3202885 None:intergenic 35.0%
TATCTTCTTTAGGCTGTTGA+AGG + chr5.4:3203040-3203059 MS.gene058130:intron 35.0%
TGCAGAAAACATCTTTGCTA+GGG + chr5.4:3202580-3202599 MS.gene058130:intron 35.0%
TGGAGTTATTATTGGACTTG+TGG + chr5.4:3204664-3204683 MS.gene058130:CDS 35.0%
TTCAAAGACAATTGAAGCTG+AGG + chr5.4:3202719-3202738 MS.gene058130:CDS 35.0%
TTCCTAGTTGACAACAAAAG+TGG + chr5.4:3202642-3202661 MS.gene058130:CDS 35.0%
TTGAATGTAACCACATTCGT+TGG - chr5.4:3204391-3204410 None:intergenic 35.0%
! ACCTGGTCATCAAAAGATTT+TGG - chr5.4:3204207-3204226 None:intergenic 35.0%
! GTGCTGATGTAGATGTTAAA+AGG + chr5.4:3203929-3203948 MS.gene058130:CDS 35.0%
! TGACATAGAATTGGTGACAT+TGG + chr5.4:3203669-3203688 MS.gene058130:intron 35.0%
! TGACATTGAATTGGTGACAT+TGG - chr5.4:3203771-3203790 None:intergenic 35.0%
! TGTGTATGAAGAGTATACTG+TGG + chr5.4:3203824-3203843 MS.gene058130:intron 35.0%
!! AACCACTTTTGTTGTCAACT+AGG - chr5.4:3202647-3202666 None:intergenic 35.0%
!! ACCAAAATCTTTTGATGACC+AGG + chr5.4:3204203-3204222 MS.gene058130:CDS 35.0%
!! ACTTTTGTTGTCAACTAGGA+AGG - chr5.4:3202643-3202662 None:intergenic 35.0%
!! AGATTGCATACTGACTTACT+GGG - chr5.4:3203794-3203813 None:intergenic 35.0%
!! ATATATGTGATGGACTTACC+TGG - chr5.4:3204224-3204243 None:intergenic 35.0%
!! GCCTCTTGGCAATTATTTTT+AGG - chr5.4:3204257-3204276 None:intergenic 35.0%
!! TAGATTGCATACTGACTTAC+TGG - chr5.4:3203795-3203814 None:intergenic 35.0%
!! TCTGATGTGAGTGTTTTTGA+TGG - chr5.4:3202319-3202338 None:intergenic 35.0%
AATGTCAAGCACCAAAGAAG+AGG + chr5.4:3204582-3204601 MS.gene058130:CDS 40.0%
ACAACAAAGTAGACAGAGTC+AGG - chr5.4:3203193-3203212 None:intergenic 40.0%
ATACAAGGTAGTGTTGCAAG+GGG - chr5.4:3203563-3203582 None:intergenic 40.0%
ATCAGTTCTGTTGCTGACAT+AGG + chr5.4:3203268-3203287 MS.gene058130:intron 40.0%
ATTTCTACATGTGTCGTACC+TGG + chr5.4:3204430-3204449 MS.gene058130:intron 40.0%
CAACATGATACCAACGAATG+TGG + chr5.4:3204378-3204397 MS.gene058130:intron 40.0%
CACATTCGTTGGTATCATGT+TGG - chr5.4:3204380-3204399 None:intergenic 40.0%
CAGACAAGGATATCAGACAT+AGG - chr5.4:3202963-3202982 None:intergenic 40.0%
CTCACTTCATGAAGCCAAAA+GGG + chr5.4:3202605-3202624 MS.gene058130:CDS 40.0%
CTGCAGAAAACATCTTTGCT+AGG + chr5.4:3202579-3202598 MS.gene058130:intron 40.0%
CTTACTGGGTGACATTGAAT+TGG - chr5.4:3203780-3203799 None:intergenic 40.0%
CTTTGCATGATTACTTCGGT+CGG + chr5.4:3202388-3202407 MS.gene058130:intron 40.0%
GAACATTATGTCATTGCAGC+CGG + chr5.4:3204541-3204560 MS.gene058130:intron 40.0%
GCACTTGAGTGACATAGAAT+TGG + chr5.4:3203660-3203679 MS.gene058130:intron 40.0%
GCTGAGTATGATGTTAACAC+AGG + chr5.4:3204608-3204627 MS.gene058130:CDS 40.0%
GTTAACACAGGAAGAGCTAT+TGG + chr5.4:3204620-3204639 MS.gene058130:CDS 40.0%
GTTATTATTGGACTTGTGGC+TGG + chr5.4:3204668-3204687 MS.gene058130:CDS 40.0%
TACTCAGCAAACCTCTTCTT+TGG - chr5.4:3204596-3204615 None:intergenic 40.0%
TCACTTCATGAAGCCAAAAG+GGG + chr5.4:3202606-3202625 MS.gene058130:CDS 40.0%
TCTCACTTCATGAAGCCAAA+AGG + chr5.4:3202604-3202623 MS.gene058130:CDS 40.0%
TCTGATATCCTTGTCTGTGT+CGG + chr5.4:3202966-3202985 MS.gene058130:intron 40.0%
! AAGTCTCTTTCTAGCAATGG+AGG - chr5.4:3202673-3202692 None:intergenic 40.0%
! ATTGGTGACATTGGTGACAT+TGG - chr5.4:3203762-3203781 None:intergenic 40.0%
! CTCAAGTCTCTTTCTAGCAA+TGG - chr5.4:3202676-3202695 None:intergenic 40.0%
!! CTTCTTTGGTGCTTGACATT+GGG - chr5.4:3204582-3204601 None:intergenic 40.0%
!! GTTGGAGCTTTGCTTGTTTT+TGG + chr5.4:3204701-3204720 MS.gene058130:CDS 40.0%
!! TCGGTGCTTTCTGGTTTAAA+GGG + chr5.4:3202985-3203004 MS.gene058130:intron 40.0%
!! TCTTCTTTGGTGCTTGACAT+TGG - chr5.4:3204583-3204602 None:intergenic 40.0%
!! TGTGAGTGTTTTTGATGGAG+TGG - chr5.4:3202314-3202333 None:intergenic 40.0%
!! TTCTTTGGTGCTTGACATTG+GGG - chr5.4:3204581-3204600 None:intergenic 40.0%
AACACAGGAAGAGCTATTGG+TGG + chr5.4:3204623-3204642 MS.gene058130:CDS 45.0%
AAGAGCAGGGTTAAAGTCAG+GGG + chr5.4:3203078-3203097 MS.gene058130:CDS 45.0%
AAGGCAAATGTGAGTAGCTC+TGG - chr5.4:3204160-3204179 None:intergenic 45.0%
ACCTTAGGCCAAAAGAATGG+TGG + chr5.4:3202762-3202781 MS.gene058130:CDS 45.0%
ACTCACATTTGCCTTGACTG+TGG + chr5.4:3204165-3204184 MS.gene058130:CDS 45.0%
CAAGAGCAGGGTTAAAGTCA+GGG + chr5.4:3203077-3203096 MS.gene058130:CDS 45.0%
CACCAGACATGCTTTCAATC+AGG - chr5.4:3204304-3204323 None:intergenic 45.0%
CTCACCTTAGGCCAAAAGAA+TGG + chr5.4:3202759-3202778 MS.gene058130:CDS 45.0%
CTTCTTTAGGCTGTTGAAGG+TGG + chr5.4:3203043-3203062 MS.gene058130:intron 45.0%
GTGAATCCAAGCTTATCTGC+TGG - chr5.4:3203148-3203167 None:intergenic 45.0%
GTTACTCCTTGTGGTGAAAG+TGG - chr5.4:3202292-3202311 None:intergenic 45.0%
TGATACGACACCGACACATA+TGG + chr5.4:3202881-3202900 MS.gene058130:intron 45.0%
TGGGGACAACTATATGTGTC+CGG - chr5.4:3204563-3204582 None:intergenic 45.0%
TTAGGCCAAAAGAATGGTGG+CGG + chr5.4:3202765-3202784 MS.gene058130:CDS 45.0%
TTATGGCCAGCAGATAAGCT+TGG + chr5.4:3203139-3203158 MS.gene058130:CDS 45.0%
TTTAGGCTGTTGAAGGTGGA+GGG + chr5.4:3203047-3203066 MS.gene058130:intron 45.0%
! CACCTGATTGAAAGCATGTC+TGG + chr5.4:3204299-3204318 MS.gene058130:intron 45.0%
! CTGTCTACTTTGTTGTCAGC+AGG + chr5.4:3203197-3203216 MS.gene058130:CDS 45.0%
! TGTCTGACATGTATTGGCGT+CGG + chr5.4:3204351-3204370 MS.gene058130:intron 45.0%
!! ATTGGACTTGTGGCTGGTTT+AGG + chr5.4:3204674-3204693 MS.gene058130:CDS 45.0%
!! GTCGGTGCTTTCTGGTTTAA+AGG + chr5.4:3202984-3203003 MS.gene058130:intron 45.0%
!! TTGGACTTGTGGCTGGTTTA+GGG + chr5.4:3204675-3204694 MS.gene058130:CDS 45.0%
AACGGTACCTGTACCTGACA+TGG - chr5.4:3202363-3202382 None:intergenic 50.0%
AAGCCACTTGGTCTCACCTT+AGG + chr5.4:3202747-3202766 MS.gene058130:CDS 50.0%
ACAGGAAGAGCTATTGGTGG+TGG + chr5.4:3204626-3204645 MS.gene058130:CDS 50.0%
ACATGGAGGAGTGAGTGTCT+TGG - chr5.4:3202346-3202365 None:intergenic 50.0%
AGTGTACACTACCACCATGC+AGG + chr5.4:3204134-3204153 MS.gene058130:intron 50.0%
CTTTAGGCTGTTGAAGGTGG+AGG + chr5.4:3203046-3203065 MS.gene058130:intron 50.0%
GAGATCACTGCAAGAACTGC+TGG + chr5.4:3202693-3202712 MS.gene058130:CDS 50.0%
GATGGAGTGGTTACTCCTTG+TGG - chr5.4:3202301-3202320 None:intergenic 50.0%
GCAAGAGCAGGGTTAAAGTC+AGG + chr5.4:3203076-3203095 MS.gene058130:CDS 50.0%
! AATTTTCTCCCGAAGCGAGG+AGG - chr5.4:3203973-3203992 None:intergenic 50.0%
! CAACACCGCCACCATTCTTT+TGG - chr5.4:3202773-3202792 None:intergenic 50.0%
! GCATGGTGGTAGTGTACACT+TGG - chr5.4:3204134-3204153 None:intergenic 50.0%
! GCCACCATTCTTTTGGCCTA+AGG - chr5.4:3202766-3202785 None:intergenic 50.0%
! GGATCCTGAAACACCCCTTT+TGG - chr5.4:3202622-3202641 None:intergenic 50.0%
! GTCAATTTTCTCCCGAAGCG+AGG - chr5.4:3203976-3203995 None:intergenic 50.0%
! TGTCGTACCTGGTTTGTGTG+TGG + chr5.4:3204441-3204460 MS.gene058130:intron 50.0%
! TTGTCTGTGTCGGTGCTTTC+TGG + chr5.4:3202976-3202995 MS.gene058130:intron 50.0%
!! AGAAAGCACCGACACAGACA+AGG - chr5.4:3202977-3202996 None:intergenic 50.0%
!! GAAGAGCTATTGGTGGTGGA+GGG + chr5.4:3204630-3204649 MS.gene058130:CDS 50.0%
!! GAAGCCAAAAGGGGTGTTTC+AGG + chr5.4:3202615-3202634 MS.gene058130:CDS 50.0%
!! TGGACTTGTGGCTGGTTTAG+GGG + chr5.4:3204676-3204695 MS.gene058130:CDS 50.0%
AGCACCACCACACACAAACC+AGG - chr5.4:3204451-3204470 None:intergenic 55.0%
CACTCCTCCATGTCAGGTAC+AGG + chr5.4:3202353-3202372 MS.gene058130:intron 55.0%
CCTTGTGGTGAAAGTGGCAG+AGG - chr5.4:3202286-3202305 None:intergenic 55.0%
GACACTCACTCCTCCATGTC+AGG + chr5.4:3202347-3202366 MS.gene058130:CDS 55.0%
GAGGGAATGCAGCAAGAGCA+GGG + chr5.4:3203065-3203084 MS.gene058130:CDS 55.0%
GCTGAGGTTGACAAGCCACT+TGG + chr5.4:3202735-3202754 MS.gene058130:CDS 55.0%
GGAGGAGTGAGTGTCTTGGA+AGG - chr5.4:3202342-3202361 None:intergenic 55.0%
GGTACCTGTACCTGACATGG+AGG - chr5.4:3202360-3202379 None:intergenic 55.0%
TGGCCTAAGGTGAGACCAAG+TGG - chr5.4:3202753-3202772 None:intergenic 55.0%
TGTGGTGAAAGTGGCAGAGG+AGG - chr5.4:3202283-3202302 None:intergenic 55.0%
! CGTACCTGGTTTGTGTGTGG+TGG + chr5.4:3204444-3204463 MS.gene058130:intron 55.0%
!! CCTCTGCCACTTTCACCACA+AGG + chr5.4:3202283-3202302 MS.gene058130:CDS 55.0%
!! GGAAGAGCTATTGGTGGTGG+AGG + chr5.4:3204629-3204648 MS.gene058130:CDS 55.0%
GGAGGGAATGCAGCAAGAGC+AGG + chr5.4:3203064-3203083 MS.gene058130:CDS 60.0%
GGTGGAGGGTTGCCTCCAAT+TGG + chr5.4:3204644-3204663 MS.gene058130:CDS 60.0%
! CGAGGAGGAGCAGGACGTTT+TGG - chr5.4:3203958-3203977 None:intergenic 60.0%
!! AGTAGCTCTGGCCTGCATGG+TGG - chr5.4:3204148-3204167 None:intergenic 60.0%
!! GTGAGTAGCTCTGGCCTGCA+TGG - chr5.4:3204151-3204170 None:intergenic 60.0%
!! GTGGCTGGTTTAGGGGCTGT+TGG + chr5.4:3204683-3204702 MS.gene058130:CDS 60.0%
CGTCCTGCTCCTCCTCGCTT+CGG + chr5.4:3203961-3203980 MS.gene058130:CDS 65.0%
GTCCTGCTCCTCCTCGCTTC+GGG + chr5.4:3203962-3203981 MS.gene058130:CDS 65.0%
CTCCCGAAGCGAGGAGGAGC+AGG - chr5.4:3203967-3203986 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 3202258 3204733 3202258 ID=MS.gene058130
chr5.4 mRNA 3202258 3204733 3202258 ID=MS.gene058130.t1;Parent=MS.gene058130
chr5.4 exon 3202258 3202368 3202258 ID=MS.gene058130.t1.exon1;Parent=MS.gene058130.t1
chr5.4 CDS 3202258 3202368 3202258 ID=cds.MS.gene058130.t1;Parent=MS.gene058130.t1
chr5.4 exon 3202585 3202800 3202585 ID=MS.gene058130.t1.exon2;Parent=MS.gene058130.t1
chr5.4 CDS 3202585 3202800 3202585 ID=cds.MS.gene058130.t1;Parent=MS.gene058130.t1
chr5.4 exon 3203052 3203218 3203052 ID=MS.gene058130.t1.exon3;Parent=MS.gene058130.t1
chr5.4 CDS 3203052 3203218 3203052 ID=cds.MS.gene058130.t1;Parent=MS.gene058130.t1
chr5.4 exon 3203924 3204008 3203924 ID=MS.gene058130.t1.exon4;Parent=MS.gene058130.t1
chr5.4 CDS 3203924 3204008 3203924 ID=cds.MS.gene058130.t1;Parent=MS.gene058130.t1
chr5.4 exon 3204156 3204224 3204156 ID=MS.gene058130.t1.exon5;Parent=MS.gene058130.t1
chr5.4 CDS 3204156 3204224 3204156 ID=cds.MS.gene058130.t1;Parent=MS.gene058130.t1
chr5.4 exon 3204560 3204733 3204560 ID=MS.gene058130.t1.exon6;Parent=MS.gene058130.t1
chr5.4 CDS 3204560 3204733 3204560 ID=cds.MS.gene058130.t1;Parent=MS.gene058130.t1
Gene Sequence

>MS.gene058130

ATGTCAGCTATGGTTGCAGGTACCTCCTCTGCCACTTTCACCACAAGGAGTAACCACTCCATCAAAAACACTCACATCAGACCTTCCAAGACACTCACTCCTCCATGTCAGGTACAGGTACCGTTCTTTTCTTTGCATGATTACTTCGGTCGGTACGTAAGTAAAGTCTGATGAAATATGTTTCATCAGAATTCGAACTCGATTCTCTTGAACAATTTGTCTTAACTGAAGTTCATTAATCATTTGAATTCAACTAGTTGGTTAGTTGGCAAATACAATTTAGAATCATGTCTTTAATACTTTTTACTCTTGCTATTGTATCTGCAGAAAACATCTTTGCTAGGGCTCTCACTTCATGAAGCCAAAAGGGGTGTTTCAGGATCCTTCCTAGTTGACAACAAAAGTGGTTCTTCCTCCATTGCTAGAAAGAGACTTGAGATCACTGCAAGAACTGCTGGAGCTTCAAAGACAATTGAAGCTGAGGTTGACAAGCCACTTGGTCTCACCTTAGGCCAAAAGAATGGTGGCGGTGTTGTTATAACTGTCAGTATCTTGCTCAATTTCCCATTAATTCAATGTTTTCATTGGTTTAGTTGCATGCAGCACCGACATAAGTGAGTGTCTGATACGACACCGACACATATGGTTACATTTCAGTATTTCACGTTCTCAAAATATAGCGTCGATGTGTTAGTGTTGTGTCCTATGTCTGATATCCTTGTCTGTGTCGGTGCTTTCTGGTTTAAAGGGAATGATTTCAATTTCTGAATGAAGATGCGTATTATCTTCTTTAGGCTGTTGAAGGTGGAGGGAATGCAGCAAGAGCAGGGTTAAAGTCAGGGGACCAAGTTCTATATACTAGCAGTTTCTTTGGAGATGAATTATGGCCAGCAGATAAGCTTGGATTCACGAAAACAGCAATCAACGCTAAGCCTGACTCTGTCTACTTTGTTGTCAGCAGGTATTTTCTTGCCTTTTGCAACTAAACTTTGTTCCATTTCCTTAATTGCATCAGTTCTGTTGCTGACATAGGTTAGTTTTTGTTGGGTTAATATGTTTTTAATTCCTATAAAATTTCAAATTTAATCTCTGCATAAATTTTGTTCAATTTGATTTCATAAGGACTAAACGCAGGCACGAAAAACATTCATTTTCTGTGAAAATTAATAAAAGTAGGGCTAAAATTGAATAAAATTTATGTAGGGACTAAACTGAAAAGGTCGTAGTTTTATAGGGACTACAAAAGTACAAACATAGTTAACCCTTATTGTTATTGCTACAAAATGTTTTCTGTGTCATTTTCCCCTTGCAACACTACCTTGTATATATAGTGGTGAAATGGGATACATGATAAGAAATAAGATATAGAAAATTGATGGTAAGACTGAAATAAGTTCGGATGGCACTTGAGTGACATAGAATTGGTGACATTGGCAAATCACAATGTCACGATCCTTGTGAAAGAGAGAGAAAAAAAAGCAACTTGTAACATTGTGATTGGCCAATGTCACCAATGTCACCAATTCAATGTCACCCAGTAAGTCAGTATGCAATCTAACGAATTGTTGTGTATGAAGAGTATACTGTGGCACCTATTCTGTTTATCAGTTACTTTACAGCTGCAATGACATAACAACCTGACTATTTTCATGTTTTTGTTATGAAGAGGTGGTGCTGATGTAGATGTTAAAAGGCTTCCAAAACGTCCTGCTCCTCCTCGCTTCGGGAGAAAATTGACTGACACTCAAAAGGCAAGAATCGTTATTCATTTTGGAGTGAATTTCATTCATTCATGCATATCTTTTCTTCCTAGTAGTATTTATTTGTCATCTATTCTAAATATGTCCATTTTACATAATTGAATGGTTAATAACCAAGTGTACACTACCACCATGCAGGCCAGAGCTACTCACATTTGCCTTGACTGTGGATACATATACTTCTTACCAAAATCTTTTGATGACCAGGTAAGTCCATCACATATATAAAAAGTTTACCTAAAAATAATTGCCAAGAGGCTTTATCTTTTATATCTATATAGCACCTGATTGAAAGCATGTCTGGTGCCCAACATGTATATTTTTTTTTTAAAATGTCTGACATGTATTGGCGTCGGACACCAACATGATACCAACGAATGTGGTTACATTCAATTTTTTCAAATTATTGTCGATTTCTACATGTGTCGTACCTGGTTTGTGTGTGGTGGTGCTTCATAGTTCTTGACAGATGATTTTAGATTAAAGTTGGATTATCAACATCTGGTGACTGCTTTTGTGATTTGAACATTATGTCATTGCAGCCGGACACATATAGTTGTCCCCAATGTCAAGCACCAAAGAAGAGGTTTGCTGAGTATGATGTTAACACAGGAAGAGCTATTGGTGGTGGAGGGTTGCCTCCAATTGGAGTTATTATTGGACTTGTGGCTGGTTTAGGGGCTGTTGGAGCTTTGCTTGTTTTTGGTCTTCAGTGA

Protein sequence

>MS.gene058130.t1

MSAMVAGTSSATFTTRSNHSIKNTHIRPSKTLTPPCQKTSLLGLSLHEAKRGVSGSFLVDNKSGSSSIARKRLEITARTAGASKTIEAEVDKPLGLTLGQKNGGGVVITAVEGGGNAARAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAINAKPDSVYFVVSRGGADVDVKRLPKRPAPPRFGRKLTDTQKARATHICLDCGYIYFLPKSFDDQPDTYSCPQCQAPKKRFAEYDVNTGRAIGGGGLPPIGVIIGLVAGLGAVGALLVFGLQ