Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52103.t1 | XP_013456524.1 | 98.8 | 343 | 2 | 1 | 1 | 341 | 1 | 343 | 1.60E-183 | 652.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52103.t1 | Q9AST1 | 71.1 | 318 | 79 | 5 | 10 | 324 | 5 | 312 | 2.8e-112 | 406.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52103.t1 | A0A072UXF8 | 98.8 | 343 | 2 | 1 | 1 | 341 | 1 | 343 | 1.1e-183 | 652.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050303 | MS.gene52103 | 0.809968 | 1.46E-50 | -1.69E-46 |
| MS.gene051975 | MS.gene52103 | 0.807377 | 5.21E-50 | -1.69E-46 |
| MS.gene052519 | MS.gene52103 | 0.805506 | 1.29E-49 | -1.69E-46 |
| MS.gene054576 | MS.gene52103 | 0.806541 | 7.82E-50 | -1.69E-46 |
| MS.gene055603 | MS.gene52103 | 0.809514 | 1.82E-50 | -1.69E-46 |
| MS.gene055808 | MS.gene52103 | 0.817567 | 3.08E-52 | -1.69E-46 |
| MS.gene056091 | MS.gene52103 | 0.813245 | 2.82E-51 | -1.69E-46 |
| MS.gene056403 | MS.gene52103 | 0.807319 | 5.36E-50 | -1.69E-46 |
| MS.gene056638 | MS.gene52103 | 0.809882 | 1.52E-50 | -1.69E-46 |
| MS.gene056776 | MS.gene52103 | 0.810645 | 1.04E-50 | -1.69E-46 |
| MS.gene056986 | MS.gene52103 | 0.830575 | 2.72E-55 | -1.69E-46 |
| MS.gene058037 | MS.gene52103 | 0.801011 | 1.10E-48 | -1.69E-46 |
| MS.gene05954 | MS.gene52103 | 0.830806 | 2.39E-55 | -1.69E-46 |
| MS.gene059830 | MS.gene52103 | 0.815932 | 7.18E-52 | -1.69E-46 |
| MS.gene06011 | MS.gene52103 | 0.806613 | 7.56E-50 | -1.69E-46 |
| MS.gene060429 | MS.gene52103 | 0.819399 | 1.19E-52 | -1.69E-46 |
| MS.gene060572 | MS.gene52103 | 0.840699 | 7.43E-58 | -1.69E-46 |
| MS.gene060586 | MS.gene52103 | 0.800875 | 1.17E-48 | -1.69E-46 |
| MS.gene060907 | MS.gene52103 | 0.802044 | 6.76E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52103.t1 | MTR_4g074230 | 98.958 | 384 | 2 | 1 | 1 | 382 | 1 | 384 | 0.0 | 773 |
| MS.gene52103.t1 | MTR_4g074230 | 99.065 | 321 | 3 | 0 | 1 | 321 | 1 | 321 | 0.0 | 660 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52103.t1 | AT1G50300 | 67.302 | 367 | 104 | 7 | 10 | 370 | 5 | 361 | 2.04e-133 | 387 |
| MS.gene52103.t1 | AT1G50300 | 62.633 | 281 | 89 | 7 | 96 | 370 | 1 | 271 | 6.40e-72 | 226 |
Find 118 sgRNAs with CRISPR-Local
Find 360 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATATGTTGGCTGAATATTT+TGG | 0.202918 | 4.1:-29681705 | MS.gene52103:CDS |
| GGAAAATTTGCTCCTTCTAA+TGG | 0.205983 | 4.1:-29681768 | MS.gene52103:CDS |
| GGCCGTGGCAGGGGACGTTC+TGG | 0.209011 | 4.1:-29680902 | MS.gene52103:CDS |
| GCTGGTGCTTCTGGCGTTGC+AGG | 0.246144 | 4.1:-29680932 | MS.gene52103:CDS |
| GCACGCCCTGCTGGTGCTTC+TGG | 0.253618 | 4.1:-29680941 | MS.gene52103:CDS |
| GCACGAGTGCTTCCTGGTTC+AGG | 0.255195 | 4.1:-29677726 | MS.gene52103:CDS |
| CAGGAGGAGGTGGCCGTGGC+AGG | 0.278126 | 4.1:-29680913 | MS.gene52103:CDS |
| GGTGCAACTGCAGGGCTATT+TGG | 0.284772 | 4.1:-29680848 | MS.gene52103:CDS |
| TGGTTCAGGGCGTGCTGGTT+GGG | 0.289046 | 4.1:-29677712 | MS.gene52103:CDS |
| CTCTTGTTGCCATGGTTTGC+TGG | 0.299452 | 4.1:+29681146 | None:intergenic |
| GATTCCATGGCAAGCATTCC+TGG | 0.304742 | 4.1:-29681789 | None:intergenic |
| AGAGATCGAGACAGGGATTA+TGG | 0.310355 | 4.1:-29676910 | MS.gene52103:CDS |
| ATGTCTGCAACTTGCCTTAT+GGG | 0.313152 | 4.1:-29681737 | MS.gene52103:CDS |
| TGGAACCATTGGAGTTATAA+AGG | 0.318896 | 4.1:-29681685 | MS.gene52103:intron |
| GGTGAGCTGTATGATGAATT+TGG | 0.319502 | 4.1:-29677795 | MS.gene52103:CDS |
| TATGTCTGCAACTTGCCTTA+TGG | 0.328564 | 4.1:-29681738 | MS.gene52103:CDS |
| CTGGTTCAGGGCGTGCTGGT+TGG | 0.328885 | 4.1:-29677713 | MS.gene52103:CDS |
| AGTGATGTCGATGGTGTTAA+TGG | 0.330703 | 4.1:-29681195 | MS.gene52103:CDS |
| GGACGTTCTGGGCCAGATGC+AGG | 0.337930 | 4.1:-29680890 | MS.gene52103:CDS |
| GAAAATTTGCTCCTTCTAAT+GGG | 0.344168 | 4.1:-29681767 | MS.gene52103:CDS |
| TGTGGAAGTGCACGCCCTGC+TGG | 0.347172 | 4.1:-29680950 | MS.gene52103:CDS |
| CGTCCAGCTGGTGCAACTGC+AGG | 0.354707 | 4.1:-29680857 | MS.gene52103:CDS |
| AGTTTCAGATTGCTGTGTTT+TGG | 0.356059 | 4.1:+29677749 | None:intergenic |
| GTACAGGGAAACCTAAAATA+TGG | 0.363199 | 4.1:-29681443 | MS.gene52103:CDS |
| CTGCTATTGCAGTATATGTT+TGG | 0.371572 | 4.1:+29681262 | None:intergenic |
| GAAACTGCACGAGTGCTTCC+TGG | 0.382916 | 4.1:-29677732 | MS.gene52103:CDS |
| GGCTATTTGGTCCCAATGAC+TGG | 0.387107 | 4.1:-29680835 | MS.gene52103:CDS |
| CACGAGTGCTTCCTGGTTCA+GGG | 0.389853 | 4.1:-29677725 | MS.gene52103:CDS |
| ACGTTCTGGGCCAGATGCAG+GGG | 0.392528 | 4.1:-29680888 | MS.gene52103:CDS |
| GGAGGAGGTGGCCGTGGCAG+GGG | 0.394233 | 4.1:-29680911 | MS.gene52103:CDS |
| GCCGTGGCAGGGGACGTTCT+GGG | 0.411401 | 4.1:-29680901 | MS.gene52103:CDS |
| GACGTTCTGGGCCAGATGCA+GGG | 0.412571 | 4.1:-29680889 | MS.gene52103:CDS |
| TGGCACGGAATTTCTTCTTA+AGG | 0.415207 | 4.1:+29677769 | None:intergenic |
| ATAGGTGTGGCAATATCAAT+TGG | 0.418424 | 4.1:-29679707 | MS.gene52103:intron |
| GTCGAAATAGAGAGAGGGAC+AGG | 0.428254 | 4.1:-29676936 | MS.gene52103:CDS |
| GGTTGGGAGGTTGAGGATCT+AGG | 0.428724 | 4.1:-29677696 | MS.gene52103:intron |
| ACGTCAGTACCAGCAACAAC+CGG | 0.429856 | 4.1:+29681237 | None:intergenic |
| CTTCCTGGTTCAGGGCGTGC+TGG | 0.434352 | 4.1:-29677717 | MS.gene52103:CDS |
| CATATCACAGACCTTGTATT+CGG | 0.440223 | 4.1:+29681108 | None:intergenic |
| AGGAGGAGGTGGCCGTGGCA+GGG | 0.441158 | 4.1:-29680912 | MS.gene52103:CDS |
| GCGTGCTGGTTGGGAGGTTG+AGG | 0.442475 | 4.1:-29677703 | MS.gene52103:CDS |
| ATAGCAGACCCGGTTGTTGC+TGG | 0.443186 | 4.1:-29681246 | MS.gene52103:CDS |
| CAATCGCCCTCTTGTTGCCA+TGG | 0.443269 | 4.1:+29681138 | None:intergenic |
| ACAGGGGAAGAGATCGAGAC+AGG | 0.444481 | 4.1:-29676918 | MS.gene52103:CDS |
| ACATCACTTTCAGTTTCCTC+TGG | 0.451741 | 4.1:+29681210 | None:intergenic |
| GCAACGCCAGAAGCACCAGC+AGG | 0.461187 | 4.1:+29680935 | None:intergenic |
| GCTTCTGGCGTTGCAGGAGG+AGG | 0.468468 | 4.1:-29680926 | MS.gene52103:CDS |
| AGCCCTGCAGTTGCACCAGC+TGG | 0.469244 | 4.1:+29680854 | None:intergenic |
| TTTAATATCGGTGTCTACTT+CGG | 0.473694 | 4.1:+29676875 | None:intergenic |
| GTTGCAGGAGGAGGTGGCCG+TGG | 0.474248 | 4.1:-29680917 | MS.gene52103:CDS |
| CAACCAGCACGCCCTGAACC+AGG | 0.475347 | 4.1:+29677714 | None:intergenic |
| GTCACAGTAGCATCTCCCTT+TGG | 0.480691 | 4.1:+29681393 | None:intergenic |
| TCTGGCGTTGCAGGAGGAGG+TGG | 0.481544 | 4.1:-29680923 | MS.gene52103:CDS |
| CATGGCAACAAGAGGGCGAT+TGG | 0.484158 | 4.1:-29681137 | MS.gene52103:CDS |
| CATTGGACAAGGCCAGTCAT+TGG | 0.485145 | 4.1:+29680823 | None:intergenic |
| CAGGGATTATGGACGAGAAC+GGG | 0.487630 | 4.1:-29676899 | MS.gene52103:CDS |
| TTGCAGAAAGATAAACGTAC+AGG | 0.490948 | 4.1:-29681459 | MS.gene52103:intron |
| ACACCACCCTCGTTGTGCCC+AGG | 0.493132 | 4.1:+29679645 | None:intergenic |
| ATTGGACAAGGCCAGTCATT+GGG | 0.494257 | 4.1:+29680824 | None:intergenic |
| ATTTGCAATACAAACAAGCC+TGG | 0.495239 | 4.1:-29679663 | MS.gene52103:CDS |
| ATATTATCGTCGGTCCCATA+AGG | 0.496822 | 4.1:+29681723 | None:intergenic |
| GAGTCAAGGGACCGTTATGA+TGG | 0.500996 | 4.1:-29677000 | MS.gene52103:CDS |
| AGACAGAGGAAGAGAGTCAA+GGG | 0.502977 | 4.1:-29677013 | MS.gene52103:CDS |
| TTAAACAGAGGAGGGCGAGC+TGG | 0.505797 | 4.1:-29677962 | MS.gene52103:intron |
| ATTGGATGTGTCCGAATACA+AGG | 0.508039 | 4.1:-29681119 | MS.gene52103:intron |
| ACATAGATAGACCCATTAGA+AGG | 0.508080 | 4.1:+29681756 | None:intergenic |
| GCCCAGAACGTCCCCTGCCA+CGG | 0.511393 | 4.1:+29680900 | None:intergenic |
| GTCCAGCTGGTGCAACTGCA+GGG | 0.522936 | 4.1:-29680856 | MS.gene52103:CDS |
| AGATGCTACTGTGACATATG+AGG | 0.528491 | 4.1:-29681385 | MS.gene52103:CDS |
| GGCACAACGAGGGTGGTGTA+AGG | 0.528607 | 4.1:-29679641 | MS.gene52103:intron |
| TCGAAATAGAGAGAGGGACA+GGG | 0.538004 | 4.1:-29676935 | MS.gene52103:CDS |
| TTCAGGGCGTGCTGGTTGGG+AGG | 0.541272 | 4.1:-29677709 | MS.gene52103:CDS |
| TTACAAAGAGCTTGATGAAG+AGG | 0.552917 | 4.1:-29677936 | MS.gene52103:CDS |
| TAGGTGTGGCAATATCAATT+GGG | 0.553457 | 4.1:-29679706 | MS.gene52103:CDS |
| CAGGGGAAGAGATCGAGACA+GGG | 0.554781 | 4.1:-29676917 | MS.gene52103:CDS |
| GTCGATGGTGTTAATGGAAG+AGG | 0.554855 | 4.1:-29681189 | MS.gene52103:CDS |
| CCATACCTTTATAACTCCAA+TGG | 0.555137 | 4.1:+29681680 | None:intergenic |
| GGTGCTTCTGGCGTTGCAGG+AGG | 0.557530 | 4.1:-29680929 | MS.gene52103:CDS |
| TTCTCTGCTCTCCATCATAA+CGG | 0.558553 | 4.1:+29676989 | None:intergenic |
| AAAGAGACGAATGAACCAAA+GGG | 0.558771 | 4.1:-29681408 | MS.gene52103:CDS |
| CTGCAGTTGCACCAGCTGGA+CGG | 0.561682 | 4.1:+29680858 | None:intergenic |
| GGTGTTAATGGAAGAGGCAG+AGG | 0.562740 | 4.1:-29681183 | MS.gene52103:CDS |
| CTGCCGTGGCTGCTGTTGAG+TGG | 0.571241 | 4.1:-29681353 | MS.gene52103:CDS |
| CGAAATAGAGAGAGGGACAG+GGG | 0.581694 | 4.1:-29676934 | MS.gene52103:CDS |
| GAGACAGAGGAAGAGAGTCA+AGG | 0.587406 | 4.1:-29677014 | MS.gene52103:CDS |
| ACAGGGATTATGGACGAGAA+CGG | 0.593289 | 4.1:-29676900 | MS.gene52103:CDS |
| AACAGAGGAGGGCGAGCTGG+AGG | 0.593908 | 4.1:-29677959 | MS.gene52103:intron |
| TTCAGCCAACATATTATCGT+CGG | 0.597239 | 4.1:+29681713 | None:intergenic |
| AAACCACTCAACAGCAGCCA+CGG | 0.598977 | 4.1:+29681350 | None:intergenic |
| CAAAGAGACGAATGAACCAA+AGG | 0.600702 | 4.1:-29681409 | MS.gene52103:CDS |
| AAGCCTGGGCACAACGAGGG+TGG | 0.605160 | 4.1:-29679648 | MS.gene52103:CDS |
| TTTGCAATACAAACAAGCCT+GGG | 0.606882 | 4.1:-29679662 | MS.gene52103:CDS |
| CGTTCTGGGCCAGATGCAGG+GGG | 0.607334 | 4.1:-29680887 | MS.gene52103:CDS |
| TGGGACCGACGATAATATGT+TGG | 0.612755 | 4.1:-29681718 | MS.gene52103:CDS |
| CAACGCCAGAAGCACCAGCA+GGG | 0.613406 | 4.1:+29680936 | None:intergenic |
| CGTCAGTACCAGCAACAACC+GGG | 0.613629 | 4.1:+29681238 | None:intergenic |
| CAGCAAACCATGGCAACAAG+AGG | 0.614216 | 4.1:-29681145 | MS.gene52103:CDS |
| ACAGAGAGCATAACGAGGAG+AGG | 0.615331 | 4.1:-29676966 | MS.gene52103:CDS |
| TTGAAGAAACTAAACGTCGT+AGG | 0.624536 | 4.1:-29677910 | MS.gene52103:CDS |
| CGGGGTGCGTGTAATCGCTG+TGG | 0.632515 | 4.1:-29680968 | MS.gene52103:CDS |
| ACAGCAGCCACGGCAGCATG+TGG | 0.634443 | 4.1:+29681360 | None:intergenic |
| GTTGTTGCTGGTACTGACGT+CGG | 0.634611 | 4.1:-29681234 | MS.gene52103:CDS |
| AGCAAACCATGGCAACAAGA+GGG | 0.635048 | 4.1:-29681144 | MS.gene52103:CDS |
| TGAGGATCCACATGCTGCCG+TGG | 0.639570 | 4.1:-29681367 | MS.gene52103:CDS |
| TGGTACTGACGTCGGACCAG+AGG | 0.639768 | 4.1:-29681226 | MS.gene52103:CDS |
| AAAGCAGTCGAAATAGAGAG+AGG | 0.640490 | 4.1:-29676942 | MS.gene52103:CDS |
| AAGAAACTAAACGTCGTAGG+CGG | 0.641204 | 4.1:-29677907 | MS.gene52103:CDS |
| TGCAGAAAGATAAACGTACA+GGG | 0.643687 | 4.1:-29681458 | MS.gene52103:intron |
| AAGCAGTCGAAATAGAGAGA+GGG | 0.643715 | 4.1:-29676941 | MS.gene52103:CDS |
| TACAATTGGAGTTTATATAG+CGG | 0.645043 | 4.1:-29681304 | MS.gene52103:CDS |
| AACAAGCCTGGGCACAACGA+GGG | 0.649708 | 4.1:-29679651 | MS.gene52103:CDS |
| TTGATGCTTCCAGCAAACCA+TGG | 0.653109 | 4.1:-29681155 | MS.gene52103:CDS |
| ATATACTGCAATAGCAGACC+CGG | 0.656715 | 4.1:-29681256 | MS.gene52103:CDS |
| GAGAAACAGAGAGCATAACG+AGG | 0.665827 | 4.1:-29676971 | MS.gene52103:CDS |
| ACAAAATCGTACATTGGACA+AGG | 0.668648 | 4.1:+29680812 | None:intergenic |
| GCAATATCAATTGGGCAAAG+CGG | 0.687100 | 4.1:-29679698 | MS.gene52103:CDS |
| AAACAAGCCTGGGCACAACG+AGG | 0.703032 | 4.1:-29679652 | MS.gene52103:CDS |
| GAAACTGAAAGTGATGTCGA+TGG | 0.721373 | 4.1:-29681204 | MS.gene52103:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAACAAAAAGATAAT+AGG | + | chr4.1:29681199-29681218 | None:intergenic | 10.0% |
| !! | AATACATGTTATATATAAAT+TGG | - | chr4.1:29680803-29680822 | MS.gene52103:intron | 10.0% |
| !! | AATCATAGTAATAAGTAATA+TGG | - | chr4.1:29679831-29679850 | MS.gene52103:intron | 15.0% |
| !! | ATGTATTTATGTAAAATGAA+GGG | + | chr4.1:29680599-29680618 | None:intergenic | 15.0% |
| !! | ATTTATTAAAAAGATGTGAA+TGG | + | chr4.1:29680636-29680655 | None:intergenic | 15.0% |
| !! | TATGTATTTATGTAAAATGA+AGG | + | chr4.1:29680600-29680619 | None:intergenic | 15.0% |
| !! | TTAAAAATAAATGAAAACCA+AGG | - | chr4.1:29679143-29679162 | MS.gene52103:intron | 15.0% |
| !! | TTTACATAAATACATACATA+CGG | - | chr4.1:29680604-29680623 | MS.gene52103:intron | 15.0% |
| !!! | TATATTTTAGTATTTCTCTT+CGG | + | chr4.1:29679896-29679915 | None:intergenic | 15.0% |
| !! | AAATTAATACTCAATGCAAA+AGG | + | chr4.1:29678311-29678330 | None:intergenic | 20.0% |
| !! | AATCTCAATATTGATATATG+AGG | - | chr4.1:29679638-29679657 | MS.gene52103:intron | 20.0% |
| !! | AATTAATACTCAATGCAAAA+GGG | + | chr4.1:29678310-29678329 | None:intergenic | 20.0% |
| !! | ACATCATCTTAATTTATTGT+TGG | - | chr4.1:29680149-29680168 | MS.gene52103:intron | 20.0% |
| !! | AGTATAAATAAATCAGACAA+CGG | + | chr4.1:29677894-29677913 | None:intergenic | 20.0% |
| !! | ATAAACAGAACAACATAAAT+GGG | + | chr4.1:29677125-29677144 | None:intergenic | 20.0% |
| !! | ATAATATGTGATTACTTGAA+TGG | - | chr4.1:29677021-29677040 | MS.gene52103:CDS | 20.0% |
| !! | ATCATCTTAATTTATTGTTG+GGG | - | chr4.1:29680151-29680170 | MS.gene52103:intron | 20.0% |
| !! | CATCATCTTAATTTATTGTT+GGG | - | chr4.1:29680150-29680169 | MS.gene52103:intron | 20.0% |
| !! | CCTAAATAAATAGAGAAATA+AGG | - | chr4.1:29679803-29679822 | MS.gene52103:intron | 20.0% |
| !! | TATCATATTCAATTTACTTG+TGG | + | chr4.1:29678092-29678111 | None:intergenic | 20.0% |
| !! | TTACATAAATACATACATAC+GGG | - | chr4.1:29680605-29680624 | MS.gene52103:intron | 20.0% |
| !! | TTTGTAAATTGGATATTTAC+AGG | + | chr4.1:29681487-29681506 | None:intergenic | 20.0% |
| !!! | AAATATCTTTTGAATTAGAG+TGG | - | chr4.1:29680232-29680251 | MS.gene52103:intron | 20.0% |
| !!! | ACAATTTTGAGTTATCATTA+TGG | - | chr4.1:29681134-29681153 | MS.gene52103:CDS | 20.0% |
| !!! | CCTTATTTCTCTATTTATTT+AGG | + | chr4.1:29679806-29679825 | None:intergenic | 20.0% |
| !!! | TAGTTCTCTATGAATTTTAA+AGG | - | chr4.1:29678366-29678385 | MS.gene52103:intron | 20.0% |
| !!! | TATCTTTTACTACCATAAAA+GGG | + | chr4.1:29679404-29679423 | None:intergenic | 20.0% |
| !!! | TCAATAACTGAAAAAGTATA+TGG | + | chr4.1:29680519-29680538 | None:intergenic | 20.0% |
| !!! | TCATGATATAACCATATTTT+AGG | + | chr4.1:29677230-29677249 | None:intergenic | 20.0% |
| !!! | TCTCTATTTATTTAGGATTA+GGG | + | chr4.1:29679799-29679818 | None:intergenic | 20.0% |
| !!! | TTCTCTATTTATTTAGGATT+AGG | + | chr4.1:29679800-29679819 | None:intergenic | 20.0% |
| !!! | TTCTGTAACATTTTGTAAAT+TGG | + | chr4.1:29681498-29681517 | None:intergenic | 20.0% |
| !!! | TTTAACAACAAAGATTTTCA+TGG | - | chr4.1:29677329-29677348 | MS.gene52103:intron | 20.0% |
| ! | AAAAACCAACCTCTATATAT+AGG | - | chr4.1:29679768-29679787 | MS.gene52103:intron | 25.0% |
| ! | AAAACCAACCTCTATATATA+GGG | - | chr4.1:29679769-29679788 | MS.gene52103:intron | 25.0% |
| ! | AAGTAATCACATATTATCGT+AGG | + | chr4.1:29677018-29677037 | None:intergenic | 25.0% |
| ! | AATTGTAATCTAACAATGCT+AGG | + | chr4.1:29681120-29681139 | None:intergenic | 25.0% |
| ! | ACATGAAATTATGAATCAGT+TGG | - | chr4.1:29681549-29681568 | MS.gene52103:intron | 25.0% |
| ! | AGAAGATTTAATGTATGACA+TGG | - | chr4.1:29679669-29679688 | MS.gene52103:CDS | 25.0% |
| ! | AGATGATGAAATGATAGATT+GGG | + | chr4.1:29678339-29678358 | None:intergenic | 25.0% |
| ! | AGGTATCAATTAAAGAAAAC+AGG | + | chr4.1:29678204-29678223 | None:intergenic | 25.0% |
| ! | AGTATAATTTAGATTTGTGC+AGG | + | chr4.1:29681372-29681391 | None:intergenic | 25.0% |
| ! | ATTAATACTCAATGCAAAAG+GGG | + | chr4.1:29678309-29678328 | None:intergenic | 25.0% |
| ! | ATTGTAATCTAACAATGCTA+GGG | + | chr4.1:29681119-29681138 | None:intergenic | 25.0% |
| ! | ATTTAATGTATGACATGGTT+TGG | - | chr4.1:29679674-29679693 | MS.gene52103:CDS | 25.0% |
| ! | CTTATATCTGACATTAAACT+TGG | - | chr4.1:29678833-29678852 | MS.gene52103:intron | 25.0% |
| ! | GATAAACAGAACAACATAAA+TGG | + | chr4.1:29677126-29677145 | None:intergenic | 25.0% |
| ! | GTATAATTTAGATTTGTGCA+GGG | + | chr4.1:29681371-29681390 | None:intergenic | 25.0% |
| ! | TACAATTGGAGTTTATATAG+CGG | - | chr4.1:29677355-29677374 | MS.gene52103:intron | 25.0% |
| ! | TACAGTCAATTAGTGTTTAT+AGG | - | chr4.1:29678474-29678493 | MS.gene52103:intron | 25.0% |
| ! | TACATTATGTTGATCTCAAA+TGG | - | chr4.1:29679586-29679605 | MS.gene52103:intron | 25.0% |
| ! | TAGATGATGAAATGATAGAT+TGG | + | chr4.1:29678340-29678359 | None:intergenic | 25.0% |
| ! | TAGATGATTTAGGTATATTG+TGG | + | chr4.1:29680004-29680023 | None:intergenic | 25.0% |
| ! | TGAAATTACTTTGCTAACTT+GGG | - | chr4.1:29680663-29680682 | MS.gene52103:intron | 25.0% |
| ! | TGCACAAATCTAAATTATAC+TGG | - | chr4.1:29681371-29681390 | MS.gene52103:CDS | 25.0% |
| ! | TTGAAATTACTTTGCTAACT+TGG | - | chr4.1:29680662-29680681 | MS.gene52103:intron | 25.0% |
| !! | ACCATTTTCAAATACTTTCA+TGG | - | chr4.1:29681170-29681189 | MS.gene52103:CDS | 25.0% |
| !! | CTCTATTTATTTAGGATTAG+GGG | + | chr4.1:29679798-29679817 | None:intergenic | 25.0% |
| !! | CTTGTTGTGTTATATTATGT+TGG | - | chr4.1:29678042-29678061 | MS.gene52103:intron | 25.0% |
| !! | GTAAATTGAATATGATAGTG+AGG | - | chr4.1:29678095-29678114 | MS.gene52103:intron | 25.0% |
| !! | GTAATACTTTTAATCCTTAG+AGG | + | chr4.1:29679569-29679588 | None:intergenic | 25.0% |
| !! | GTATCTTTTACTACCATAAA+AGG | + | chr4.1:29679405-29679424 | None:intergenic | 25.0% |
| !! | GTTACTTTCTTATTAAACAG+AGG | - | chr4.1:29680685-29680704 | MS.gene52103:intron | 25.0% |
| !! | GTTTAGTCTTTAGATGATTT+AGG | + | chr4.1:29680014-29680033 | None:intergenic | 25.0% |
| !! | TCCTTCAACTTTTTATGTAA+CGG | - | chr4.1:29680061-29680080 | MS.gene52103:intron | 25.0% |
| !! | TGTTATATATAAATTGGCTC+TGG | - | chr4.1:29680809-29680828 | MS.gene52103:intron | 25.0% |
| !! | TTTTATTAGTCGTTCCTTTT+TGG | - | chr4.1:29681216-29681235 | MS.gene52103:CDS | 25.0% |
| !!! | AATATGTTGGCTGAATATTT+TGG | - | chr4.1:29676954-29676973 | MS.gene52103:CDS | 25.0% |
| !!! | ACCATGAAAGTATTTGAAAA+TGG | + | chr4.1:29681174-29681193 | None:intergenic | 25.0% |
| !!! | ATGATTTTTTTCTTACTGTC+AGG | - | chr4.1:29680836-29680855 | MS.gene52103:CDS | 25.0% |
| !!! | ATGTTTTGAAATAGTATGCA+GGG | + | chr4.1:29681285-29681304 | None:intergenic | 25.0% |
| !!! | TATGTTTTGAAATAGTATGC+AGG | + | chr4.1:29681286-29681305 | None:intergenic | 25.0% |
| !!! | TTTTACTTTTTGTTCCTCTA+AGG | - | chr4.1:29679552-29679571 | MS.gene52103:intron | 25.0% |
| AAAAATTACAGCATTCACCT+TGG | + | chr4.1:29679163-29679182 | None:intergenic | 30.0% | |
| AAATTCCAACATTTCGGATT+TGG | + | chr4.1:29680560-29680579 | None:intergenic | 30.0% | |
| AAGACTTGCAATATTGCAAT+GGG | + | chr4.1:29680197-29680216 | None:intergenic | 30.0% | |
| AATGTGACAAAATCGTACAT+TGG | + | chr4.1:29677856-29677875 | None:intergenic | 30.0% | |
| ACAAAAACCAAGACAAAGAT+AGG | + | chr4.1:29679700-29679719 | None:intergenic | 30.0% | |
| ACAATCTACATTGCATATCT+AGG | + | chr4.1:29679269-29679288 | None:intergenic | 30.0% | |
| ACCGTTACATAAAAAGTTGA+AGG | + | chr4.1:29680065-29680084 | None:intergenic | 30.0% | |
| ACCTAGAAATTCCAACATTT+CGG | + | chr4.1:29680566-29680585 | None:intergenic | 30.0% | |
| ACTTTCTTATTAAACAGAGG+AGG | - | chr4.1:29680688-29680707 | MS.gene52103:intron | 30.0% | |
| AGGAATGAAAGACAAGTATA+TGG | + | chr4.1:29680441-29680460 | None:intergenic | 30.0% | |
| AGTTCAATTGTTAAAGGTAG+AGG | + | chr4.1:29679942-29679961 | None:intergenic | 30.0% | |
| ATCCTTACATGAGCAAATTA+TGG | + | chr4.1:29681437-29681456 | None:intergenic | 30.0% | |
| CACTAATAGTATGTACTTGA+AGG | + | chr4.1:29679067-29679086 | None:intergenic | 30.0% | |
| CGGTATTATAAACAGTAAGT+TGG | + | chr4.1:29681588-29681607 | None:intergenic | 30.0% | |
| CTTACTGTTTATAATACCGA+TGG | - | chr4.1:29681589-29681608 | MS.gene52103:intron | 30.0% | |
| CTTTCTTATTAAACAGAGGA+GGG | - | chr4.1:29680689-29680708 | MS.gene52103:intron | 30.0% | |
| GAGGATAGTTCAATTGTTAA+AGG | + | chr4.1:29679948-29679967 | None:intergenic | 30.0% | |
| GTTCATCATACAAGATAGAT+AGG | + | chr4.1:29680333-29680352 | None:intergenic | 30.0% | |
| TAAGACTTGCAATATTGCAA+TGG | + | chr4.1:29680198-29680217 | None:intergenic | 30.0% | |
| TAAGGATATGTAGAGATTCT+AGG | - | chr4.1:29681450-29681469 | MS.gene52103:CDS | 30.0% | |
| TCAGTTGACCTTATGTAAAT+TGG | + | chr4.1:29678441-29678460 | None:intergenic | 30.0% | |
| TCTACCATTTGTTCTATCAT+TGG | - | chr4.1:29680034-29680053 | MS.gene52103:intron | 30.0% | |
| TGACCTTATGTAAATTGGAA+AGG | + | chr4.1:29678436-29678455 | None:intergenic | 30.0% | |
| TGGAAACATGATTTGAAAAC+AGG | + | chr4.1:29680461-29680480 | None:intergenic | 30.0% | |
| TTGCAAAAAGAATGCCAAAA+AGG | + | chr4.1:29681233-29681252 | None:intergenic | 30.0% | |
| TTGCAAAGTGAGGTTTATTT+GGG | - | chr4.1:29677059-29677078 | MS.gene52103:intron | 30.0% | |
| TTGCAATATTGCAAGTCTTA+TGG | - | chr4.1:29680198-29680217 | MS.gene52103:intron | 30.0% | |
| ! | ATCTAAATTATACTGGCTGT+TGG | - | chr4.1:29681378-29681397 | MS.gene52103:CDS | 30.0% |
| ! | CTGAAAAAGTATATGGAAAC+AGG | + | chr4.1:29680512-29680531 | None:intergenic | 30.0% |
| ! | GAAAATTTGCTCCTTCTAAT+GGG | - | chr4.1:29676892-29676911 | MS.gene52103:CDS | 30.0% |
| ! | GATTTTCATGGCAATACAAT+TGG | - | chr4.1:29677341-29677360 | MS.gene52103:intron | 30.0% |
| !! | GAGATTTGTTAACTTTGCTA+AGG | - | chr4.1:29678256-29678275 | MS.gene52103:intron | 30.0% |
| !!! | AAAATTCAGTTTTGTTAGCC+GGG | - | chr4.1:29679236-29679255 | MS.gene52103:intron | 30.0% |
| !!! | CAAAATTCAGTTTTGTTAGC+CGG | - | chr4.1:29679235-29679254 | MS.gene52103:intron | 30.0% |
| !!! | CTTGTCTTCTTTTTTGACAT+AGG | - | chr4.1:29678934-29678953 | MS.gene52103:intron | 30.0% |
| !!! | GAAAATATTTTGATGCCAAG+TGG | - | chr4.1:29679373-29679392 | MS.gene52103:intron | 30.0% |
| !!! | GTGAAACTACATTTTTTCGT+TGG | - | chr4.1:29679102-29679121 | MS.gene52103:intron | 30.0% |
| AAAGAGAAGTTCAGTAGATG+AGG | + | chr4.1:29678585-29678604 | None:intergenic | 35.0% | |
| AAAGAGACGAATGAACCAAA+GGG | - | chr4.1:29677251-29677270 | MS.gene52103:intron | 35.0% | |
| ACAAAATCGTACATTGGACA+AGG | + | chr4.1:29677850-29677869 | None:intergenic | 35.0% | |
| ACAAATCAATAGATGCAGAC+AGG | + | chr4.1:29680307-29680326 | None:intergenic | 35.0% | |
| ACATAGATAGACCCATTAGA+AGG | + | chr4.1:29676906-29676925 | None:intergenic | 35.0% | |
| ACATTGCAAAGTGCAAAATC+AGG | + | chr4.1:29678227-29678246 | None:intergenic | 35.0% | |
| AGAAGTTCAAAATAGCCACT+TGG | + | chr4.1:29679308-29679327 | None:intergenic | 35.0% | |
| AGACTTGCAATATTGCAATG+GGG | + | chr4.1:29680196-29680215 | None:intergenic | 35.0% | |
| AGCTCCAATGATAGAACAAA+TGG | + | chr4.1:29680041-29680060 | None:intergenic | 35.0% | |
| AGTTATCATTATGGCTATCG+CGG | - | chr4.1:29681143-29681162 | MS.gene52103:CDS | 35.0% | |
| ATAGGTGTGGCAATATCAAT+TGG | - | chr4.1:29678952-29678971 | MS.gene52103:intron | 35.0% | |
| ATATGATGATCATTGTGAGC+AGG | + | chr4.1:29679466-29679485 | None:intergenic | 35.0% | |
| ATGAAATGATAGATTGGGTC+GGG | + | chr4.1:29678334-29678353 | None:intergenic | 35.0% | |
| ATGAGCAAATTATGGCAACA+TGG | + | chr4.1:29681429-29681448 | None:intergenic | 35.0% | |
| ATTTGCAATACAAACAAGCC+TGG | - | chr4.1:29678996-29679015 | MS.gene52103:intron | 35.0% | |
| CAAATAAACCTCACTTTGCA+AGG | + | chr4.1:29677060-29677079 | None:intergenic | 35.0% | |
| CAATTGTTAAAGGTAGAGGA+AGG | + | chr4.1:29679938-29679957 | None:intergenic | 35.0% | |
| CATACTCTTGTGAATGAACA+TGG | - | chr4.1:29678157-29678176 | MS.gene52103:intron | 35.0% | |
| CATATCACAGACCTTGTATT+CGG | + | chr4.1:29677554-29677573 | None:intergenic | 35.0% | |
| CCAGTTGTTGTAGCAAATTT+AGG | - | chr4.1:29678657-29678676 | MS.gene52103:intron | 35.0% | |
| CCATACCTTTATAACTCCAA+TGG | + | chr4.1:29676982-29677001 | None:intergenic | 35.0% | |
| CCATTGGAGTTATAAAGGTA+TGG | - | chr4.1:29676979-29676998 | MS.gene52103:CDS | 35.0% | |
| CTATCTTGTATGATGAACCT+GGG | - | chr4.1:29680335-29680354 | MS.gene52103:intron | 35.0% | |
| CTGCTATTGCAGTATATGTT+TGG | + | chr4.1:29677400-29677419 | None:intergenic | 35.0% | |
| CTTGCAAAGTGAGGTTTATT+TGG | - | chr4.1:29677058-29677077 | MS.gene52103:intron | 35.0% | |
| GATGAAATGATAGATTGGGT+CGG | + | chr4.1:29678335-29678354 | None:intergenic | 35.0% | |
| GGTTAAATGAAATGGACAGA+TGG | + | chr4.1:29680286-29680305 | None:intergenic | 35.0% | |
| GTACAGGGAAACCTAAAATA+TGG | - | chr4.1:29677216-29677235 | MS.gene52103:intron | 35.0% | |
| GTATCCCTATATATAGAGGT+TGG | + | chr4.1:29679776-29679795 | None:intergenic | 35.0% | |
| GTGAAAAATGAGTGATAGTC+TGG | + | chr4.1:29677166-29677185 | None:intergenic | 35.0% | |
| TAGGTGTGGCAATATCAATT+GGG | - | chr4.1:29678953-29678972 | MS.gene52103:intron | 35.0% | |
| TATCTTGTATGATGAACCTG+GGG | - | chr4.1:29680336-29680355 | MS.gene52103:intron | 35.0% | |
| TATGCAATGTAGATTGTCAG+CGG | - | chr4.1:29679272-29679291 | MS.gene52103:intron | 35.0% | |
| TATTATGTTGGACATAGTGC+TGG | - | chr4.1:29678054-29678073 | MS.gene52103:intron | 35.0% | |
| TCAATGATGAGATAGAGACA+TGG | + | chr4.1:29680481-29680500 | None:intergenic | 35.0% | |
| TCCGAAATGTTGGAATTTCT+AGG | - | chr4.1:29680562-29680581 | MS.gene52103:intron | 35.0% | |
| TCTATCTTGTATGATGAACC+TGG | - | chr4.1:29680334-29680353 | MS.gene52103:intron | 35.0% | |
| TGATGTCATAAAGATGACGA+TGG | + | chr4.1:29680135-29680154 | None:intergenic | 35.0% | |
| TGCAGAAAGATAAACGTACA+GGG | - | chr4.1:29677201-29677220 | MS.gene52103:intron | 35.0% | |
| TGCAGACAGGTTAAATGAAA+TGG | + | chr4.1:29680294-29680313 | None:intergenic | 35.0% | |
| TGGAACCATTGGAGTTATAA+AGG | - | chr4.1:29676974-29676993 | MS.gene52103:CDS | 35.0% | |
| TGTTTATAATACCGATGGCA+GGG | - | chr4.1:29681594-29681613 | MS.gene52103:intron | 35.0% | |
| TTACAAAGAGCTTGATGAAG+AGG | - | chr4.1:29680723-29680742 | MS.gene52103:intron | 35.0% | |
| TTCAGCCAACATATTATCGT+CGG | + | chr4.1:29676949-29676968 | None:intergenic | 35.0% | |
| TTGAAGAAACTAAACGTCGT+AGG | - | chr4.1:29680749-29680768 | MS.gene52103:intron | 35.0% | |
| TTGATTGAGTGCAAATCTAG+CGG | - | chr4.1:29678410-29678429 | MS.gene52103:intron | 35.0% | |
| TTGCAGAAAGATAAACGTAC+AGG | - | chr4.1:29677200-29677219 | MS.gene52103:intron | 35.0% | |
| TTTGCAATACAAACAAGCCT+GGG | - | chr4.1:29678997-29679016 | MS.gene52103:intron | 35.0% | |
| TTTGTTGAAGTCATGTGGTT+TGG | - | chr4.1:29679715-29679734 | MS.gene52103:intron | 35.0% | |
| ! | AGTTTCAGATTGCTGTGTTT+TGG | + | chr4.1:29680913-29680932 | None:intergenic | 35.0% |
| ! | GATTTTGCACTTTGCAATGT+TGG | - | chr4.1:29678227-29678246 | MS.gene52103:intron | 35.0% |
| ! | GGAAAATTTGCTCCTTCTAA+TGG | - | chr4.1:29676891-29676910 | MS.gene52103:CDS | 35.0% |
| ! | TATAGCGGAGTCAAAAAACA+AGG | - | chr4.1:29677370-29677389 | MS.gene52103:intron | 35.0% |
| ! | TATATTTGCTAGTTGCTTGC+CGG | - | chr4.1:29681330-29681349 | MS.gene52103:CDS | 35.0% |
| ! | TGATAATGATGATGACGTTG+AGG | - | chr4.1:29678501-29678520 | MS.gene52103:intron | 35.0% |
| ! | TGGTTTTTGTTGAAGTCATG+TGG | - | chr4.1:29679710-29679729 | MS.gene52103:intron | 35.0% |
| ! | TTAGAAGGAGCAAATTTTCC+AGG | + | chr4.1:29676891-29676910 | None:intergenic | 35.0% |
| ! | TTGATGATCACATATCAGAG+TGG | + | chr4.1:29681530-29681549 | None:intergenic | 35.0% |
| ! | TTTGGCATTCTTTTTGCAAC+TGG | - | chr4.1:29681234-29681253 | MS.gene52103:CDS | 35.0% |
| ! | TTTTCTTACTGTCAGGATGA+TGG | - | chr4.1:29680843-29680862 | MS.gene52103:CDS | 35.0% |
| !! | AATGTGAACTTTGCTTTTCG+GGG | - | chr4.1:29677673-29677692 | MS.gene52103:intron | 35.0% |
| !! | CCTAAATTTGCTACAACAAC+TGG | + | chr4.1:29678660-29678679 | None:intergenic | 35.0% |
| !! | CGAATGTGAACTTTGCTTTT+CGG | - | chr4.1:29677671-29677690 | MS.gene52103:intron | 35.0% |
| !! | GAATGTGAACTTTGCTTTTC+GGG | - | chr4.1:29677672-29677691 | MS.gene52103:intron | 35.0% |
| !! | TGCCATAATTTGCTCATGTA+AGG | - | chr4.1:29681432-29681451 | MS.gene52103:CDS | 35.0% |
| !!! | CTTCTTTTTTGACATAGGTG+TGG | - | chr4.1:29678939-29678958 | MS.gene52103:intron | 35.0% |
| !!! | GCTGAATATTTTGGAACCAT+TGG | - | chr4.1:29676963-29676982 | MS.gene52103:CDS | 35.0% |
| AAAGCAGTCGAAATAGAGAG+AGG | - | chr4.1:29681717-29681736 | MS.gene52103:CDS | 40.0% | |
| AACAATGCTAGGGAACATGT+GGG | + | chr4.1:29681109-29681128 | None:intergenic | 40.0% | |
| AAGAAACTAAACGTCGTAGG+CGG | - | chr4.1:29680752-29680771 | MS.gene52103:intron | 40.0% | |
| AAGCAGTCGAAATAGAGAGA+GGG | - | chr4.1:29681718-29681737 | MS.gene52103:CDS | 40.0% | |
| AAGTTCAGTAGATGAGGACA+AGG | + | chr4.1:29678579-29678598 | None:intergenic | 40.0% | |
| ACAGAAAAAAGCAGAGACAG+AGG | - | chr4.1:29681632-29681651 | MS.gene52103:intron | 40.0% | |
| ACATCACTTTCAGTTTCCTC+TGG | + | chr4.1:29677452-29677471 | None:intergenic | 40.0% | |
| AGATGCTACTGTGACATATG+AGG | - | chr4.1:29677274-29677293 | MS.gene52103:intron | 40.0% | |
| AGTAACCCGATTGATGAAAC+TGG | + | chr4.1:29678017-29678036 | None:intergenic | 40.0% | |
| ATATACTGCAATAGCAGACC+CGG | - | chr4.1:29677403-29677422 | MS.gene52103:intron | 40.0% | |
| ATATTATCGTCGGTCCCATA+AGG | + | chr4.1:29676939-29676958 | None:intergenic | 40.0% | |
| ATATTGTGGAGAAGACCTGT+TGG | + | chr4.1:29679990-29680009 | None:intergenic | 40.0% | |
| ATCAGACAACGGAAAGAATG+TGG | + | chr4.1:29677883-29677902 | None:intergenic | 40.0% | |
| ATGTCTGCAACTTGCCTTAT+GGG | - | chr4.1:29676922-29676941 | MS.gene52103:CDS | 40.0% | |
| ATTGGATGTGTCCGAATACA+AGG | - | chr4.1:29677540-29677559 | MS.gene52103:intron | 40.0% | |
| ATTGTACACCGTTGGAACTT+GGG | - | chr4.1:29678686-29678705 | MS.gene52103:intron | 40.0% | |
| CAAAGAGACGAATGAACCAA+AGG | - | chr4.1:29677250-29677269 | MS.gene52103:intron | 40.0% | |
| CAAGGTCTGTGATATGAGAT+TGG | - | chr4.1:29677558-29677577 | MS.gene52103:intron | 40.0% | |
| CCAACATTTCGGATTTGGAA+GGG | + | chr4.1:29680555-29680574 | None:intergenic | 40.0% | |
| CCTAGCTTAGAGGTGAAAAT+AGG | + | chr4.1:29680389-29680408 | None:intergenic | 40.0% | |
| CGGCCTTTCCAATTTACATA+AGG | - | chr4.1:29678430-29678449 | MS.gene52103:intron | 40.0% | |
| CTCTTTATCAATGCTCCAAC+AGG | - | chr4.1:29679972-29679991 | MS.gene52103:intron | 40.0% | |
| CTGTTTATAATACCGATGGC+AGG | - | chr4.1:29681593-29681612 | MS.gene52103:intron | 40.0% | |
| CTTAACTGAACATTAGGCTG+AGG | - | chr4.1:29678797-29678816 | MS.gene52103:intron | 40.0% | |
| GAAACTGAAAGTGATGTCGA+TGG | - | chr4.1:29677455-29677474 | MS.gene52103:intron | 40.0% | |
| GCAATATCAATTGGGCAAAG+CGG | - | chr4.1:29678961-29678980 | MS.gene52103:intron | 40.0% | |
| GCTCTGCTTAACTGAACATT+AGG | - | chr4.1:29678791-29678810 | MS.gene52103:intron | 40.0% | |
| GTAACCCGATTGATGAAACT+GGG | + | chr4.1:29678016-29678035 | None:intergenic | 40.0% | |
| GTTATCATTATGGCTATCGC+GGG | - | chr4.1:29681144-29681163 | MS.gene52103:CDS | 40.0% | |
| TAACAATGCTAGGGAACATG+TGG | + | chr4.1:29681110-29681129 | None:intergenic | 40.0% | |
| TATGTCTGCAACTTGCCTTA+TGG | - | chr4.1:29676921-29676940 | MS.gene52103:CDS | 40.0% | |
| TCAGACAACGGAAAGAATGT+GGG | + | chr4.1:29677882-29677901 | None:intergenic | 40.0% | |
| TCCAACATTTCGGATTTGGA+AGG | + | chr4.1:29680556-29680575 | None:intergenic | 40.0% | |
| TGCCGCAAAATCACATACAT+TGG | + | chr4.1:29679532-29679551 | None:intergenic | 40.0% | |
| TGGCACGGAATTTCTTCTTA+AGG | + | chr4.1:29680893-29680912 | None:intergenic | 40.0% | |
| TTCTCTGCTCTCCATCATAA+CGG | + | chr4.1:29681673-29681692 | None:intergenic | 40.0% | |
| TTGCAAAGTGCAAAATCAGG+AGG | + | chr4.1:29678224-29678243 | None:intergenic | 40.0% | |
| ! | AGTGATGTCGATGGTGTTAA+TGG | - | chr4.1:29677464-29677483 | MS.gene52103:intron | 40.0% |
| ! | CAAGTTGGCTATACGATATG+GGG | - | chr4.1:29678718-29678737 | MS.gene52103:intron | 40.0% |
| ! | CCTATTTTCACCTCTAAGCT+AGG | - | chr4.1:29680386-29680405 | MS.gene52103:intron | 40.0% |
| ! | CGCCAATGTATGTGATTTTG+CGG | - | chr4.1:29679527-29679546 | MS.gene52103:intron | 40.0% |
| ! | GCAAGTTGGCTATACGATAT+GGG | - | chr4.1:29678717-29678736 | MS.gene52103:intron | 40.0% |
| ! | TCTGTCTCTTTTGTCCTTGT+GGG | - | chr4.1:29678607-29678626 | MS.gene52103:intron | 40.0% |
| ! | TGCAAGTTGGCTATACGATA+TGG | - | chr4.1:29678716-29678735 | MS.gene52103:intron | 40.0% |
| ! | TTTTCTGTCCTTGCAAAGTG+AGG | - | chr4.1:29677049-29677068 | MS.gene52103:intron | 40.0% |
| ! | TTTTGATCCTGAACCACACT+TGG | - | chr4.1:29680259-29680278 | MS.gene52103:intron | 40.0% |
| !! | AGCATTGATAAAGAGAGTGG+AGG | + | chr4.1:29679967-29679986 | None:intergenic | 40.0% |
| !! | AGGGGTATCCCTATATATAG+AGG | + | chr4.1:29679780-29679799 | None:intergenic | 40.0% |
| !! | TGGAGCATTGATAAAGAGAG+TGG | + | chr4.1:29679970-29679989 | None:intergenic | 40.0% |
| !! | TTTGTTGTTAACCTCTCCCT+GGG | - | chr4.1:29678546-29678565 | MS.gene52103:intron | 40.0% |
| ACAATGCTAGGGAACATGTG+GGG | + | chr4.1:29681108-29681127 | None:intergenic | 45.0% | |
| ACAGGGATTATGGACGAGAA+CGG | - | chr4.1:29681759-29681778 | MS.gene52103:CDS | 45.0% | |
| ACTACACTCCCAAGTTCCAA+CGG | + | chr4.1:29678697-29678716 | None:intergenic | 45.0% | |
| AGACAGAGGAAGAGAGTCAA+GGG | - | chr4.1:29681646-29681665 | MS.gene52103:intron | 45.0% | |
| AGAGATCGAGACAGGGATTA+TGG | - | chr4.1:29681749-29681768 | MS.gene52103:CDS | 45.0% | |
| AGCAAACCATGGCAACAAGA+GGG | - | chr4.1:29677515-29677534 | MS.gene52103:intron | 45.0% | |
| AGCTAATGCTGCAACTTTGC+AGG | - | chr4.1:29681037-29681056 | MS.gene52103:intron | 45.0% | |
| ATGCAAAAGGGGACGCAATT+TGG | + | chr4.1:29678298-29678317 | None:intergenic | 45.0% | |
| ATTAGTGACACCTCTGATGC+AGG | - | chr4.1:29679080-29679099 | MS.gene52103:intron | 45.0% | |
| ATTGCAATGGGGCTGAATAC+AGG | + | chr4.1:29680185-29680204 | None:intergenic | 45.0% | |
| ATTGGACAAGGCCAGTCATT+GGG | + | chr4.1:29677838-29677857 | None:intergenic | 45.0% | |
| CAATGTAGATTGTCAGCGGT+AGG | - | chr4.1:29679276-29679295 | MS.gene52103:intron | 45.0% | |
| CACAAGGACAAAAGAGACAG+AGG | + | chr4.1:29678608-29678627 | None:intergenic | 45.0% | |
| CAGACAACGGAAAGAATGTG+GGG | + | chr4.1:29677881-29677900 | None:intergenic | 45.0% | |
| CATAAAAGGGACTCTCCACT+TGG | + | chr4.1:29679391-29679410 | None:intergenic | 45.0% | |
| CCCTTCCAAATCCGAAATGT+TGG | - | chr4.1:29680552-29680571 | MS.gene52103:intron | 45.0% | |
| CGTTGCCCAGTTTCATCAAT+CGG | - | chr4.1:29678008-29678027 | MS.gene52103:intron | 45.0% | |
| GATTGTACACCGTTGGAACT+TGG | - | chr4.1:29678685-29678704 | MS.gene52103:intron | 45.0% | |
| GCTATACGATATGGGGCTTA+TGG | - | chr4.1:29678725-29678744 | MS.gene52103:intron | 45.0% | |
| GGAAGCAATCATCATGTGAG+AGG | - | chr4.1:29678387-29678406 | MS.gene52103:intron | 45.0% | |
| GGACTAAGATTGTACACCGT+TGG | - | chr4.1:29678678-29678697 | MS.gene52103:intron | 45.0% | |
| GGTTTGGCCTATCTTTGTCT+TGG | - | chr4.1:29679690-29679709 | MS.gene52103:CDS | 45.0% | |
| GTTGCCCAGTTTCATCAATC+GGG | - | chr4.1:29678009-29678028 | MS.gene52103:intron | 45.0% | |
| TCGAAATAGAGAGAGGGACA+GGG | - | chr4.1:29681724-29681743 | MS.gene52103:CDS | 45.0% | |
| TGGAATTGACCTGCATGATG+TGG | - | chr4.1:29678853-29678872 | MS.gene52103:intron | 45.0% | |
| TGGGACCGACGATAATATGT+TGG | - | chr4.1:29676941-29676960 | MS.gene52103:CDS | 45.0% | |
| TGTAGTTTCACCTGCATCAG+AGG | + | chr4.1:29679093-29679112 | None:intergenic | 45.0% | |
| TTGATGCTTCCAGCAAACCA+TGG | - | chr4.1:29677504-29677523 | MS.gene52103:intron | 45.0% | |
| TTGTACAAGCCACATCATGC+AGG | + | chr4.1:29678865-29678884 | None:intergenic | 45.0% | |
| ! | AACATGTGGGGAAAGTGTGA+TGG | + | chr4.1:29681096-29681115 | None:intergenic | 45.0% |
| ! | CAAGTGGAGAGTCCCTTTTA+TGG | - | chr4.1:29679389-29679408 | MS.gene52103:intron | 45.0% |
| ! | CTCTGTCTCTTTTGTCCTTG+TGG | - | chr4.1:29678606-29678625 | MS.gene52103:intron | 45.0% |
| ! | GAGAAACAGAGAGCATAACG+AGG | - | chr4.1:29681688-29681707 | MS.gene52103:CDS | 45.0% |
| ! | GCATATCTAGGATACTGACC+CGG | + | chr4.1:29679257-29679276 | None:intergenic | 45.0% |
| ! | GTCGATGGTGTTAATGGAAG+AGG | - | chr4.1:29677470-29677489 | MS.gene52103:intron | 45.0% |
| !! | AAGTGTGATGGACAATGGGA+AGG | + | chr4.1:29681084-29681103 | None:intergenic | 45.0% |
| !! | AGTGTGATGGACAATGGGAA+GGG | + | chr4.1:29681083-29681102 | None:intergenic | 45.0% |
| !! | CCTCTAAGCTAGGTTTTGTG+CGG | - | chr4.1:29680396-29680415 | MS.gene52103:intron | 45.0% |
| !! | CTTTGTTGTTAACCTCTCCC+TGG | - | chr4.1:29678545-29678564 | MS.gene52103:intron | 45.0% |
| !! | GGGAAAGTGTGATGGACAAT+GGG | + | chr4.1:29681088-29681107 | None:intergenic | 45.0% |
| !! | TCTTTTGTCCTTGTGGGTTG+TGG | - | chr4.1:29678613-29678632 | MS.gene52103:intron | 45.0% |
| !!! | CAGATTGCTGTGTTTTGGCA+CGG | + | chr4.1:29680908-29680927 | None:intergenic | 45.0% |
| !! | TAAAAAATAAATAAAAACTA+GGG | + | chr4.1:29679210-29679229 | None:intergenic | 5.0% |
| !! | TTAAAAAATAAATAAAAACT+AGG | + | chr4.1:29679211-29679230 | None:intergenic | 5.0% |
| !!! | GTTTTTATTTATTTTTTAAT+TGG | - | chr4.1:29679212-29679231 | MS.gene52103:intron | 5.0% |
| AAACCACTCAACAGCAGCCA+CGG | + | chr4.1:29677312-29677331 | None:intergenic | 50.0% | |
| AACCTGGGGTGCATAAACTC+TGG | - | chr4.1:29680350-29680369 | MS.gene52103:intron | 50.0% | |
| ACGTCAGTACCAGCAACAAC+CGG | + | chr4.1:29677425-29677444 | None:intergenic | 50.0% | |
| AGATGGTCCAAGTGTGGTTC+AGG | + | chr4.1:29680269-29680288 | None:intergenic | 50.0% | |
| AGCGGTAGGATAAGACCAAG+TGG | - | chr4.1:29679290-29679309 | MS.gene52103:intron | 50.0% | |
| ATCAACTGCCACAACCCACA+AGG | + | chr4.1:29678624-29678643 | None:intergenic | 50.0% | |
| ATGGACAGATGGTCCAAGTG+TGG | + | chr4.1:29680275-29680294 | None:intergenic | 50.0% | |
| CAGCAAACCATGGCAACAAG+AGG | - | chr4.1:29677514-29677533 | MS.gene52103:intron | 50.0% | |
| CAGGGATTATGGACGAGAAC+GGG | - | chr4.1:29681760-29681779 | MS.gene52103:CDS | 50.0% | |
| CATTGGACAAGGCCAGTCAT+TGG | + | chr4.1:29677839-29677858 | None:intergenic | 50.0% | |
| CCGCACAAAACCTAGCTTAG+AGG | + | chr4.1:29680399-29680418 | None:intergenic | 50.0% | |
| CGAAATAGAGAGAGGGACAG+GGG | - | chr4.1:29681725-29681744 | MS.gene52103:CDS | 50.0% | |
| GAGACAGAGGAAGAGAGTCA+AGG | - | chr4.1:29681645-29681664 | MS.gene52103:intron | 50.0% | |
| GAGTCAAGGGACCGTTATGA+TGG | - | chr4.1:29681659-29681678 | MS.gene52103:intron | 50.0% | |
| GGCTATTTGGTCCCAATGAC+TGG | - | chr4.1:29677824-29677843 | MS.gene52103:intron | 50.0% | |
| GGTGTTAATGGAAGAGGCAG+AGG | - | chr4.1:29677476-29677495 | MS.gene52103:intron | 50.0% | |
| GTCACAGTAGCATCTCCCTT+TGG | + | chr4.1:29677269-29677288 | None:intergenic | 50.0% | |
| GTCGAAATAGAGAGAGGGAC+AGG | - | chr4.1:29681723-29681742 | MS.gene52103:CDS | 50.0% | |
| TACCAGAGTTTATGCACCCC+AGG | + | chr4.1:29680355-29680374 | None:intergenic | 50.0% | |
| TCTCTGTCAATCCCTGCCAT+CGG | + | chr4.1:29681608-29681627 | None:intergenic | 50.0% | |
| ! | ACAGAGAGCATAACGAGGAG+AGG | - | chr4.1:29681693-29681712 | MS.gene52103:CDS | 50.0% |
| ! | CTCTTGTTGCCATGGTTTGC+TGG | + | chr4.1:29677516-29677535 | None:intergenic | 50.0% |
| ! | CTTGGGAGTGTAGTGCAAGT+TGG | - | chr4.1:29678703-29678722 | MS.gene52103:intron | 50.0% |
| !! | GGGGAAAGTGTGATGGACAA+TGG | + | chr4.1:29681089-29681108 | None:intergenic | 50.0% |
| !! | GTGTGATGGACAATGGGAAG+GGG | + | chr4.1:29681082-29681101 | None:intergenic | 50.0% |
| !! | GTTGTTGCTGGTACTGACGT+CGG | - | chr4.1:29677425-29677444 | MS.gene52103:intron | 50.0% |
| !! | TGTGATGGACAATGGGAAGG+GGG | + | chr4.1:29681081-29681100 | None:intergenic | 50.0% |
| AAACAAGCCTGGGCACAACG+AGG | - | chr4.1:29679007-29679026 | MS.gene52103:intron | 55.0% | |
| AACAAGCCTGGGCACAACGA+GGG | - | chr4.1:29679008-29679027 | MS.gene52103:intron | 55.0% | |
| ACAGGGGAAGAGATCGAGAC+AGG | - | chr4.1:29681741-29681760 | MS.gene52103:CDS | 55.0% | |
| AGGACAAGGACCAGAACCCA+GGG | + | chr4.1:29678565-29678584 | None:intergenic | 55.0% | |
| AGGGCCATCAAACTCGAGTC+CGG | + | chr4.1:29681352-29681371 | None:intergenic | 55.0% | |
| ATAGCAGACCCGGTTGTTGC+TGG | - | chr4.1:29677413-29677432 | MS.gene52103:intron | 55.0% | |
| CAATCGCCCTCTTGTTGCCA+TGG | + | chr4.1:29677524-29677543 | None:intergenic | 55.0% | |
| CACGAGTGCTTCCTGGTTCA+GGG | - | chr4.1:29680934-29680953 | MS.gene52103:CDS | 55.0% | |
| CAGGGGAAGAGATCGAGACA+GGG | - | chr4.1:29681742-29681761 | MS.gene52103:CDS | 55.0% | |
| CATGGCAACAAGAGGGCGAT+TGG | - | chr4.1:29677522-29677541 | MS.gene52103:intron | 55.0% | |
| CGTCAGTACCAGCAACAACC+GGG | + | chr4.1:29677424-29677443 | None:intergenic | 55.0% | |
| CTTGCCGGACTCGAGTTTGA+TGG | - | chr4.1:29681345-29681364 | MS.gene52103:CDS | 55.0% | |
| GAAACTGCACGAGTGCTTCC+TGG | - | chr4.1:29680927-29680946 | MS.gene52103:CDS | 55.0% | |
| GGTGCAACTGCAGGGCTATT+TGG | - | chr4.1:29677811-29677830 | MS.gene52103:intron | 55.0% | |
| GGTTGGGAGGTTGAGGATCT+AGG | - | chr4.1:29680963-29680982 | MS.gene52103:CDS | 55.0% | |
| GTTAACCTCTCCCTGGGTTC+TGG | - | chr4.1:29678552-29678571 | MS.gene52103:intron | 55.0% | |
| TTAAACAGAGGAGGGCGAGC+TGG | - | chr4.1:29680697-29680716 | MS.gene52103:intron | 55.0% | |
| AAGGACCAGAACCCAGGGAG+AGG | + | chr4.1:29678560-29678579 | None:intergenic | 60.0% | |
| CTGCAGTTGCACCAGCTGGA+CGG | + | chr4.1:29677804-29677823 | None:intergenic | 60.0% | |
| GAGGACAAGGACCAGAACCC+AGG | + | chr4.1:29678566-29678585 | None:intergenic | 60.0% | |
| GCACGAGTGCTTCCTGGTTC+AGG | - | chr4.1:29680933-29680952 | MS.gene52103:CDS | 60.0% | |
| GGCACAACGAGGGTGGTGTA+AGG | - | chr4.1:29679018-29679037 | MS.gene52103:intron | 60.0% | |
| GTCCAGCTGGTGCAACTGCA+GGG | - | chr4.1:29677803-29677822 | MS.gene52103:CDS | 60.0% | |
| TGAGGATCCACATGCTGCCG+TGG | - | chr4.1:29677292-29677311 | MS.gene52103:intron | 60.0% | |
| ! | ACGTTCTGGGCCAGATGCAG+GGG | - | chr4.1:29677771-29677790 | MS.gene52103:CDS | 60.0% |
| ! | GACGTTCTGGGCCAGATGCA+GGG | - | chr4.1:29677770-29677789 | MS.gene52103:CDS | 60.0% |
| !! | CAACGCCAGAAGCACCAGCA+GGG | + | chr4.1:29677726-29677745 | None:intergenic | 60.0% |
| !! | TGGTACTGACGTCGGACCAG+AGG | - | chr4.1:29677433-29677452 | MS.gene52103:intron | 60.0% |
| !! | TGGTTCAGGGCGTGCTGGTT+GGG | - | chr4.1:29680947-29680966 | MS.gene52103:CDS | 60.0% |
| AACAGAGGAGGGCGAGCTGG+AGG | - | chr4.1:29680700-29680719 | MS.gene52103:intron | 65.0% | |
| AAGCCTGGGCACAACGAGGG+TGG | - | chr4.1:29679011-29679030 | MS.gene52103:intron | 65.0% | |
| ACACCACCCTCGTTGTGCCC+AGG | + | chr4.1:29679017-29679036 | None:intergenic | 65.0% | |
| ACAGCAGCCACGGCAGCATG+TGG | + | chr4.1:29677302-29677321 | None:intergenic | 65.0% | |
| AGCCCTGCAGTTGCACCAGC+TGG | + | chr4.1:29677808-29677827 | None:intergenic | 65.0% | |
| CAACCAGCACGCCCTGAACC+AGG | + | chr4.1:29680948-29680967 | None:intergenic | 65.0% | |
| CGGCCAATACCCCCTGCATC+TGG | + | chr4.1:29677784-29677803 | None:intergenic | 65.0% | |
| CGGGGTGCGTGTAATCGCTG+TGG | - | chr4.1:29677691-29677710 | MS.gene52103:intron | 65.0% | |
| CGTCCAGCTGGTGCAACTGC+AGG | - | chr4.1:29677802-29677821 | MS.gene52103:CDS | 65.0% | |
| CTGCCGTGGCTGCTGTTGAG+TGG | - | chr4.1:29677306-29677325 | MS.gene52103:intron | 65.0% | |
| CTTCCTGGTTCAGGGCGTGC+TGG | - | chr4.1:29680942-29680961 | MS.gene52103:CDS | 65.0% | |
| GCTGGTGCTTCTGGCGTTGC+AGG | - | chr4.1:29677727-29677746 | MS.gene52103:CDS | 65.0% | |
| GCTTCTGGCGTTGCAGGAGG+AGG | - | chr4.1:29677733-29677752 | MS.gene52103:CDS | 65.0% | |
| GGTGCTTCTGGCGTTGCAGG+AGG | - | chr4.1:29677730-29677749 | MS.gene52103:CDS | 65.0% | |
| TCTGGCGTTGCAGGAGGAGG+TGG | - | chr4.1:29677736-29677755 | MS.gene52103:CDS | 65.0% | |
| ! | CGTTCTGGGCCAGATGCAGG+GGG | - | chr4.1:29677772-29677791 | MS.gene52103:CDS | 65.0% |
| ! | CTGGTTCAGGGCGTGCTGGT+TGG | - | chr4.1:29680946-29680965 | MS.gene52103:CDS | 65.0% |
| ! | GGACGTTCTGGGCCAGATGC+AGG | - | chr4.1:29677769-29677788 | MS.gene52103:CDS | 65.0% |
| ! | GGGCCAGATGCAGGGGGTAT+TGG | - | chr4.1:29677778-29677797 | MS.gene52103:CDS | 65.0% |
| ! | TGTGGAAGTGCACGCCCTGC+TGG | - | chr4.1:29677709-29677728 | MS.gene52103:CDS | 65.0% |
| !! | GCAACGCCAGAAGCACCAGC+AGG | + | chr4.1:29677727-29677746 | None:intergenic | 65.0% |
| !! | GCGTGCTGGTTGGGAGGTTG+AGG | - | chr4.1:29680956-29680975 | MS.gene52103:CDS | 65.0% |
| !! | TTCAGGGCGTGCTGGTTGGG+AGG | - | chr4.1:29680950-29680969 | MS.gene52103:CDS | 65.0% |
| AGGAGGAGGTGGCCGTGGCA+GGG | - | chr4.1:29677747-29677766 | MS.gene52103:CDS | 70.0% | |
| GCACGCCCTGCTGGTGCTTC+TGG | - | chr4.1:29677718-29677737 | MS.gene52103:CDS | 70.0% | |
| GCCCAGAACGTCCCCTGCCA+CGG | + | chr4.1:29677762-29677781 | None:intergenic | 70.0% | |
| GCCGTGGCAGGGGACGTTCT+GGG | - | chr4.1:29677758-29677777 | MS.gene52103:CDS | 70.0% | |
| GTTGCAGGAGGAGGTGGCCG+TGG | - | chr4.1:29677742-29677761 | MS.gene52103:CDS | 70.0% | |
| !! | GGGGGTATTGGCCGTCCAGC+TGG | - | chr4.1:29677790-29677809 | MS.gene52103:CDS | 70.0% |
| CAGGAGGAGGTGGCCGTGGC+AGG | - | chr4.1:29677746-29677765 | MS.gene52103:CDS | 75.0% | |
| GGAGGAGGTGGCCGTGGCAG+GGG | - | chr4.1:29677748-29677767 | MS.gene52103:CDS | 75.0% | |
| GGCCGTGGCAGGGGACGTTC+TGG | - | chr4.1:29677757-29677776 | MS.gene52103:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 29676876 | 29681805 | 29676876 | ID=MS.gene52103 |
| chr4.1 | mRNA | 29676876 | 29681805 | 29676876 | ID=MS.gene52103.t1;Parent=MS.gene52103 |
| chr4.1 | exon | 29681686 | 29681805 | 29681686 | ID=MS.gene52103.t1.exon1;Parent=MS.gene52103.t1 |
| chr4.1 | CDS | 29681686 | 29681805 | 29681686 | ID=cds.MS.gene52103.t1;Parent=MS.gene52103.t1 |
| chr4.1 | exon | 29681120 | 29681475 | 29681120 | ID=MS.gene52103.t1.exon2;Parent=MS.gene52103.t1 |
| chr4.1 | CDS | 29681120 | 29681475 | 29681120 | ID=cds.MS.gene52103.t1;Parent=MS.gene52103.t1 |
| chr4.1 | exon | 29680824 | 29681015 | 29680824 | ID=MS.gene52103.t1.exon3;Parent=MS.gene52103.t1 |
| chr4.1 | CDS | 29680824 | 29681015 | 29680824 | ID=cds.MS.gene52103.t1;Parent=MS.gene52103.t1 |
| chr4.1 | exon | 29679642 | 29679725 | 29679642 | ID=MS.gene52103.t1.exon4;Parent=MS.gene52103.t1 |
| chr4.1 | CDS | 29679642 | 29679725 | 29679642 | ID=cds.MS.gene52103.t1;Parent=MS.gene52103.t1 |
| chr4.1 | exon | 29677898 | 29677976 | 29677898 | ID=MS.gene52103.t1.exon5;Parent=MS.gene52103.t1 |
| chr4.1 | CDS | 29677898 | 29677976 | 29677898 | ID=cds.MS.gene52103.t1;Parent=MS.gene52103.t1 |
| chr4.1 | exon | 29677697 | 29677823 | 29677697 | ID=MS.gene52103.t1.exon6;Parent=MS.gene52103.t1 |
| chr4.1 | CDS | 29677697 | 29677823 | 29677697 | ID=cds.MS.gene52103.t1;Parent=MS.gene52103.t1 |
| chr4.1 | exon | 29676876 | 29677066 | 29676876 | ID=MS.gene52103.t1.exon7;Parent=MS.gene52103.t1 |
| chr4.1 | CDS | 29676876 | 29677066 | 29676876 | ID=cds.MS.gene52103.t1;Parent=MS.gene52103.t1 |
| Gene Sequence |
| Protein sequence |
