Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52125.t1 | XP_024637598.1 | 95.1 | 1083 | 53 | 0 | 1 | 1083 | 1 | 1083 | 0.00E+00 | 2010.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52125.t1 | Q9C5M1 | 56.4 | 149 | 63 | 2 | 1102 | 1249 | 81 | 228 | 2.3e-38 | 162.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52125.t1 | A0A396I9Z6 | 95.1 | 1083 | 53 | 0 | 1 | 1083 | 1 | 1083 | 0.0e+00 | 2010.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene52125 | 0.837209 | 5.95E-57 | -1.69E-46 |
| MS.gene049609 | MS.gene52125 | 0.820186 | 7.83E-53 | -1.69E-46 |
| MS.gene050593 | MS.gene52125 | 0.807798 | 4.24E-50 | -1.69E-46 |
| MS.gene050747 | MS.gene52125 | 0.815013 | 1.15E-51 | -1.69E-46 |
| MS.gene050772 | MS.gene52125 | 0.824666 | 7.13E-54 | -1.69E-46 |
| MS.gene050950 | MS.gene52125 | 0.801784 | 7.65E-49 | -1.69E-46 |
| MS.gene05105 | MS.gene52125 | 0.815356 | 9.64E-52 | -1.69E-46 |
| MS.gene051387 | MS.gene52125 | 0.839584 | 1.45E-57 | -1.69E-46 |
| MS.gene051666 | MS.gene52125 | 0.813495 | 2.49E-51 | -1.69E-46 |
| MS.gene051694 | MS.gene52125 | 0.823242 | 1.54E-53 | -1.69E-46 |
| MS.gene051858 | MS.gene52125 | 0.819405 | 1.18E-52 | -1.69E-46 |
| MS.gene053107 | MS.gene52125 | 0.813118 | 3.01E-51 | -1.69E-46 |
| MS.gene053207 | MS.gene52125 | 0.800496 | 1.40E-48 | -1.69E-46 |
| MS.gene055206 | MS.gene52125 | 0.816193 | 6.27E-52 | -1.69E-46 |
| MS.gene057416 | MS.gene52125 | 0.817465 | 3.25E-52 | -1.69E-46 |
| MS.gene057658 | MS.gene52125 | 0.812662 | 3.79E-51 | -1.69E-46 |
| MS.gene058019 | MS.gene52125 | 0.811176 | 7.98E-51 | -1.69E-46 |
| MS.gene059023 | MS.gene52125 | 0.805546 | 1.27E-49 | -1.69E-46 |
| MS.gene05934 | MS.gene52125 | 0.834918 | 2.27E-56 | -1.69E-46 |
| MS.gene059801 | MS.gene52125 | 0.81671 | 4.81E-52 | -1.69E-46 |
| MS.gene059902 | MS.gene52125 | 0.816898 | 4.36E-52 | -1.69E-46 |
| MS.gene060193 | MS.gene52125 | 0.806443 | 8.21E-50 | -1.69E-46 |
| MS.gene06092 | MS.gene52125 | 0.820389 | 7.04E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52125.t1 | MTR_4g074610 | 95.111 | 1084 | 52 | 1 | 1 | 1083 | 1 | 1084 | 0.0 | 2097 |
| MS.gene52125.t1 | MTR_4g074590 | 98.000 | 150 | 3 | 0 | 1103 | 1252 | 102 | 251 | 2.09e-97 | 311 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52125.t1 | AT3G19780 | 38.356 | 1095 | 572 | 21 | 25 | 1079 | 18 | 1049 | 0.0 | 704 |
| MS.gene52125.t1 | AT3G19780 | 38.391 | 1094 | 572 | 21 | 25 | 1079 | 18 | 1048 | 0.0 | 704 |
| MS.gene52125.t1 | AT3G19780 | 38.350 | 897 | 482 | 18 | 224 | 1084 | 1 | 862 | 0.0 | 563 |
| MS.gene52125.t1 | AT3G19780 | 38.850 | 852 | 459 | 15 | 266 | 1084 | 22 | 844 | 0.0 | 555 |
| MS.gene52125.t1 | AT3G19800 | 59.028 | 144 | 56 | 3 | 1107 | 1249 | 84 | 225 | 9.68e-47 | 167 |
| MS.gene52125.t1 | AT3G19800 | 59.028 | 144 | 56 | 3 | 1107 | 1249 | 87 | 228 | 1.05e-46 | 167 |
Find 262 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTTAGGTGTTGCTGATTC+TGG | 0.145160 | 4.1:+29469758 | MS.gene52125:CDS |
| GATTCCAACAATCTACTTAT+TGG | 0.156006 | 4.1:+29471973 | MS.gene52125:CDS |
| GCTTTCTCTGAATTTGTTAT+TGG | 0.188214 | 4.1:+29471322 | MS.gene52125:CDS |
| GCGTCCTCCATTTGTTAATT+TGG | 0.190767 | 4.1:+29471258 | MS.gene52125:CDS |
| TCTTCTGATGGAAACAATTA+TGG | 0.192337 | 4.1:+29470974 | MS.gene52125:CDS |
| TAAATTCCAGGTAGGATTTC+AGG | 0.222141 | 4.1:-29473799 | None:intergenic |
| TTTCTTTCTGAGTTTCTTAA+TGG | 0.231798 | 4.1:+29471178 | MS.gene52125:CDS |
| AGTTCTCTAGCAAAGGATTT+AGG | 0.234355 | 4.1:+29470617 | MS.gene52125:CDS |
| TCCTTAACCAGAACAGTTTC+CGG | 0.250583 | 4.1:+29473766 | MS.gene52125:CDS |
| TGAAATACCTGTCGGCAATA+TGG | 0.256325 | 4.1:-29481181 | None:intergenic |
| GTTTGTTGCATCTACGTCTT+TGG | 0.259690 | 4.1:-29480306 | None:intergenic |
| TCTGTAGGGTATAAATATTC+AGG | 0.264882 | 4.1:+29468265 | MS.gene52125:CDS |
| AAGACGCCGCTACCTGAAAT+TGG | 0.280726 | 4.1:+29481708 | MS.gene52125:CDS |
| CTCAGTTAATGATGGCCGTT+TGG | 0.298140 | 4.1:+29469571 | MS.gene52125:CDS |
| CTCAAATTCTTCAAATGAAC+AGG | 0.298292 | 4.1:-29469630 | None:intergenic |
| TCATTAACAAGCATCTAAAA+TGG | 0.301144 | 4.1:+29473656 | MS.gene52125:CDS |
| TGCAGAGCTTCACCATATAA+TGG | 0.310440 | 4.1:+29469329 | MS.gene52125:intron |
| TTCAACTATGCTTCAATGTA+TGG | 0.318646 | 4.1:+29471154 | MS.gene52125:CDS |
| TAAGGGTCATCTCCAATTTC+AGG | 0.323199 | 4.1:-29481720 | None:intergenic |
| GTGTTGCTGATTCTGGTTCA+TGG | 0.323487 | 4.1:+29469765 | MS.gene52125:CDS |
| GGGTCATGTTGATACATTAA+AGG | 0.324464 | 4.1:+29471477 | MS.gene52125:CDS |
| TGTGTGGGTGGAGTTGGATC+TGG | 0.326665 | 4.1:-29468045 | None:intergenic |
| AAGAGGCTCCTTTGTCCCTT+GGG | 0.327513 | 4.1:+29473710 | MS.gene52125:CDS |
| AATCATCTTATCAAAGATAA+AGG | 0.328449 | 4.1:+29472984 | MS.gene52125:CDS |
| AATTGCCACAGAAAAGCTTT+TGG | 0.329946 | 4.1:+29473561 | MS.gene52125:CDS |
| TCTTGCCATCCATTTGATAC+TGG | 0.330242 | 4.1:-29473505 | None:intergenic |
| TGGTCATAGTTGATCCCTTT+TGG | 0.330252 | 4.1:+29471098 | MS.gene52125:CDS |
| TCAATTGGTGTTAGTGTTGA+TGG | 0.335185 | 4.1:+29468214 | MS.gene52125:CDS |
| TGATTGTTCGTGAAGTATAT+CGG | 0.338218 | 4.1:+29471446 | MS.gene52125:CDS |
| AGAAACTAGGGGAAAGAGTA+TGG | 0.340220 | 4.1:+29470286 | MS.gene52125:CDS |
| TACTTCTAGAATTCCGTCTT+TGG | 0.341252 | 4.1:+29471078 | MS.gene52125:CDS |
| GTTGAGCACAGCACCGATAA+AGG | 0.343995 | 4.1:+29469515 | MS.gene52125:CDS |
| AATTTAACGTATGGGTTCTC+AGG | 0.344390 | 4.1:+29481664 | MS.gene52125:CDS |
| GCATGCTAGCTTTGGTTTAT+CGG | 0.347729 | 4.1:+29481105 | MS.gene52125:intron |
| AGATAATACCAGCAACCTTC+TGG | 0.347767 | 4.1:-29469401 | None:intergenic |
| CTCCACTGAAGCCCATTATA+TGG | 0.348171 | 4.1:-29469341 | None:intergenic |
| ATTATATCCGGAAACTGTTC+TGG | 0.348466 | 4.1:-29473773 | None:intergenic |
| GGCTCTATAGCAGATTTATA+TGG | 0.349191 | 4.1:-29470782 | None:intergenic |
| TCAGTTAATGATGGCCGTTT+GGG | 0.349219 | 4.1:+29469572 | MS.gene52125:CDS |
| GAAATACCTGTCGGCAATAT+GGG | 0.350769 | 4.1:-29481180 | None:intergenic |
| ATTACCATCAGAATAGAAAA+AGG | 0.355134 | 4.1:-29471029 | None:intergenic |
| TTTGCAGTTCGCTACCTAGC+TGG | 0.360363 | 4.1:+29469788 | MS.gene52125:CDS |
| TTTGTGAAGTTCCTTCGCTC+TGG | 0.361392 | 4.1:+29469540 | MS.gene52125:CDS |
| ACATGTTCTGACCATTGATA+TGG | 0.363206 | 4.1:-29471211 | None:intergenic |
| AAAGAGGCTCCTTTGTCCCT+TGG | 0.363881 | 4.1:+29473709 | MS.gene52125:CDS |
| CGCTGCCACAATGAGAATCT+TGG | 0.364279 | 4.1:-29473605 | None:intergenic |
| AGTACTGACGGCTTATTTGC+TGG | 0.365814 | 4.1:-29470233 | None:intergenic |
| TGTATCAACATGACCCTTGA+TGG | 0.373510 | 4.1:-29471470 | None:intergenic |
| ATCAAGATCAACTTCGTATC+CGG | 0.376867 | 4.1:-29482323 | None:intergenic |
| TTTCGTGACGTTTGTTGATT+CGG | 0.379609 | 4.1:+29468384 | MS.gene52125:CDS |
| TCCGGAAACTGTTCTGGTTA+AGG | 0.380039 | 4.1:-29473767 | None:intergenic |
| TCAAGATAAAATACCGAATC+AGG | 0.380318 | 4.1:+29473456 | MS.gene52125:CDS |
| CCTTCTGAACGTCATAGATT+TGG | 0.381643 | 4.1:+29469707 | MS.gene52125:CDS |
| TCTTTGTGCCACGATAATTT+CGG | 0.383578 | 4.1:-29470400 | None:intergenic |
| GCAGAGCTTCACCATATAAT+GGG | 0.385294 | 4.1:+29469330 | MS.gene52125:intron |
| TGTTGCTGTTGCTAGGGTTA+TGG | 0.388602 | 4.1:-29467960 | None:intergenic |
| AACTTCACAAAACCCTTTAT+CGG | 0.390445 | 4.1:-29469528 | None:intergenic |
| GTGTGGGTGGAGTTGGATCT+GGG | 0.391734 | 4.1:-29468044 | None:intergenic |
| TGGTCTTGTTTAGCAATAGT+TGG | 0.392296 | 4.1:+29471398 | MS.gene52125:CDS |
| GAAGATAGCACGACCAGTTT+GGG | 0.392897 | 4.1:-29470815 | None:intergenic |
| CGTTTGAGATATCGTTCATA+AGG | 0.393700 | 4.1:-29468111 | None:intergenic |
| AGAAGATAGCACGACCAGTT+TGG | 0.394168 | 4.1:-29470816 | None:intergenic |
| GGAGGATGTGTGGGTGGAGT+TGG | 0.394198 | 4.1:-29468051 | None:intergenic |
| TGATCTTCTTAAGTCAAATT+CGG | 0.394929 | 4.1:+29470430 | MS.gene52125:CDS |
| CAAAAGGTGGTCGAGACTAT+TGG | 0.396305 | 4.1:+29482687 | MS.gene52125:CDS |
| TTTCTTCGGGTACTCAAATT+GGG | 0.398642 | 4.1:+29473900 | MS.gene52125:CDS |
| TTGAAATTCTTGCGGTTTGT+TGG | 0.401555 | 4.1:-29468140 | None:intergenic |
| AACATAATGTTGCTGCCAAA+AGG | 0.403509 | 4.1:-29471113 | None:intergenic |
| GGCGAGAAATGTGTTGAATT+CGG | 0.407447 | 4.1:+29468297 | MS.gene52125:CDS |
| GGAACACATAATAGTACTAT+TGG | 0.409814 | 4.1:+29468481 | MS.gene52125:CDS |
| AGGGCGATGCTTTCATCCTT+AGG | 0.413996 | 4.1:+29469743 | MS.gene52125:CDS |
| GTCAGGCTTCTTTCGACAAA+AGG | 0.416003 | 4.1:+29482671 | MS.gene52125:CDS |
| AATGTGTTGAATTCGGTTCA+TGG | 0.416252 | 4.1:+29468304 | MS.gene52125:CDS |
| CTATCATCGTCGTTGATAAC+GGG | 0.417301 | 4.1:-29467937 | None:intergenic |
| TAAATATTCAGGAAGACTTT+CGG | 0.420159 | 4.1:+29468276 | MS.gene52125:CDS |
| AGATACAAGTGGACAAAGTC+AGG | 0.421106 | 4.1:+29482654 | MS.gene52125:intron |
| CGGCTTATTTGCTGGAATAG+TGG | 0.426031 | 4.1:-29470225 | None:intergenic |
| TAATGCCAGCATGCTAGCTT+TGG | 0.428452 | 4.1:+29481097 | MS.gene52125:intron |
| GCTATCATCGTCGTTGATAA+CGG | 0.430584 | 4.1:-29467938 | None:intergenic |
| TGAACGTCATAGATTTGGTC+TGG | 0.431027 | 4.1:+29469712 | MS.gene52125:CDS |
| GTAATTATCAATTGCTTGAA+AGG | 0.435807 | 4.1:+29471047 | MS.gene52125:CDS |
| TTTATTTCCAGCAGAAAAGA+AGG | 0.437882 | 4.1:+29472887 | MS.gene52125:CDS |
| AAGAACCAGTTGACAGCTAC+TGG | 0.438549 | 4.1:+29473875 | MS.gene52125:CDS |
| CATTTACTGCAGAGTTTAGC+CGG | 0.442228 | 4.1:-29482366 | None:intergenic |
| CTGACCATTGATATGGAACC+AGG | 0.443670 | 4.1:-29471204 | None:intergenic |
| TGAGGAGGAGGAGGATGTGT+GGG | 0.445718 | 4.1:-29468060 | None:intergenic |
| AAGACTAACCAGAAGGTTGC+TGG | 0.445763 | 4.1:+29469393 | MS.gene52125:CDS |
| CATCCGACTCCTCAGAAACT+AGG | 0.448621 | 4.1:+29470273 | MS.gene52125:CDS |
| TCTTAAAGCTCTTAGAGTAT+TGG | 0.448882 | 4.1:+29470313 | MS.gene52125:CDS |
| TCCTCCTCCTCACTCTCCCT+TGG | 0.449333 | 4.1:+29468071 | MS.gene52125:CDS |
| CAATATCACCGGATAAAAGT+TGG | 0.452586 | 4.1:-29470643 | None:intergenic |
| TTGACACAAAATTTAACGTA+TGG | 0.454071 | 4.1:+29481655 | MS.gene52125:CDS |
| CAATCCAATAAGTAGATTGT+TGG | 0.454825 | 4.1:-29471977 | None:intergenic |
| AAGGAACCTCTTCTTTATGA+AGG | 0.456453 | 4.1:+29472906 | MS.gene52125:CDS |
| TTGTGAAGTTCCTTCGCTCT+GGG | 0.456799 | 4.1:+29469541 | MS.gene52125:CDS |
| TATAAATCTGCTATAGAGCC+TGG | 0.456994 | 4.1:+29470785 | MS.gene52125:CDS |
| TCCCCTAGTTTCTGAGGAGT+CGG | 0.459661 | 4.1:-29470276 | None:intergenic |
| CCATGATGAGGTGGGGATGA+TGG | 0.461060 | 4.1:-29467993 | None:intergenic |
| ATCAACTTCGTATCCGGGTC+TGG | 0.462073 | 4.1:-29482317 | None:intergenic |
| TTGAGCACAGCACCGATAAA+GGG | 0.463108 | 4.1:+29469516 | MS.gene52125:CDS |
| GCCTCATGTGGTGGTCGGTT+CGG | 0.463615 | 4.1:+29473534 | MS.gene52125:CDS |
| CTCATTGTGGCAGCGGATCA+AGG | 0.464121 | 4.1:+29473613 | MS.gene52125:CDS |
| TGGAGAGAATGATAGAATAC+TGG | 0.466176 | 4.1:+29469359 | MS.gene52125:CDS |
| GGCTGTCTGAAACAGTAATC+AGG | 0.467170 | 4.1:+29473350 | MS.gene52125:CDS |
| GATCAAGGAACCGGATTTCA+AGG | 0.468552 | 4.1:+29473628 | MS.gene52125:CDS |
| GAGGGATGTTTATCCTGCAC+TGG | 0.468640 | 4.1:+29472863 | MS.gene52125:intron |
| GGTCATGTTGATACATTAAA+GGG | 0.469335 | 4.1:+29471478 | MS.gene52125:CDS |
| TTGCAGTTCGCTACCTAGCT+GGG | 0.469726 | 4.1:+29469789 | MS.gene52125:CDS |
| TAATCAAGGAAGTAAATTCC+AGG | 0.471900 | 4.1:-29473811 | None:intergenic |
| TGAAAATCCAAATTAACAAA+TGG | 0.473220 | 4.1:-29471265 | None:intergenic |
| GGTACTGAAGTCAGTAGATC+AGG | 0.473755 | 4.1:+29472021 | MS.gene52125:CDS |
| ACCAAGGGAGAGTGAGGAGG+AGG | 0.474370 | 4.1:-29468072 | None:intergenic |
| GTGAGGAGGAGGAGGATGTG+TGG | 0.475971 | 4.1:-29468061 | None:intergenic |
| ATTTGGTCTGGTTTCCGATA+GGG | 0.477356 | 4.1:+29469724 | MS.gene52125:CDS |
| TGATAGAATACTGGCGTCAA+GGG | 0.477491 | 4.1:+29469368 | MS.gene52125:CDS |
| TCCATCACGATTATTAATGA+AGG | 0.479812 | 4.1:+29470494 | MS.gene52125:CDS |
| GACTAACTTGGAAGAAGACT+TGG | 0.483045 | 4.1:+29473678 | MS.gene52125:CDS |
| TTAGATTCGACCACCTGATT+CGG | 0.483540 | 4.1:-29473469 | None:intergenic |
| GAGATAGTGTTGCTGTTGCT+AGG | 0.483825 | 4.1:-29467967 | None:intergenic |
| GAGGACGCATGGCCTCCCTT+TGG | 0.484773 | 4.1:-29471243 | None:intergenic |
| GAATTTGACTTAAGAAGATC+AGG | 0.485129 | 4.1:-29470428 | None:intergenic |
| GATTGTTCGTGAAGTATATC+GGG | 0.489125 | 4.1:+29471447 | MS.gene52125:CDS |
| TTCACATATTCTTAAAGAAG+AGG | 0.489290 | 4.1:+29469823 | MS.gene52125:CDS |
| TGGTCAGAACATGTTCTTCA+AGG | 0.490477 | 4.1:+29471220 | MS.gene52125:CDS |
| ATAAATTTACCAGTATCAAA+TGG | 0.491336 | 4.1:+29473496 | MS.gene52125:CDS |
| TCCACCGATGGTTCTTCTGA+TGG | 0.491591 | 4.1:+29470962 | MS.gene52125:CDS |
| GATTTCAGGTAAATTATATC+CGG | 0.491708 | 4.1:-29473785 | None:intergenic |
| TGCATGGAATAAAGATGTCT+TGG | 0.491954 | 4.1:+29471378 | MS.gene52125:CDS |
| TGAAGTATATCGGGCCATCA+AGG | 0.492637 | 4.1:+29471456 | MS.gene52125:CDS |
| AAGGGAGAGTGAGGAGGAGG+AGG | 0.495087 | 4.1:-29468069 | None:intergenic |
| AGGAAGTCCGTGATCTATGA+TGG | 0.495271 | 4.1:-29470906 | None:intergenic |
| GTTTGAGATATCGTTCATAA+GGG | 0.495453 | 4.1:-29468110 | None:intergenic |
| GCGAAGAGCAAGAAATTCAA+TGG | 0.497728 | 4.1:+29468460 | MS.gene52125:CDS |
| CAATTGCTTGAAAGGCTCAC+TGG | 0.499422 | 4.1:+29471055 | MS.gene52125:CDS |
| CTCCTCACTCTCCCTTGGTC+CGG | 0.499993 | 4.1:+29468076 | MS.gene52125:CDS |
| GAACAATCAATTCCATTCTC+TGG | 0.501296 | 4.1:-29471432 | None:intergenic |
| CATCAATCTCTGCGTCCAAA+AGG | 0.501589 | 4.1:+29480757 | MS.gene52125:CDS |
| TCGGGTACTCAAATTGGGAA+TGG | 0.502344 | 4.1:+29473905 | MS.gene52125:CDS |
| AATGATAAGACCTTGAAATC+CGG | 0.503821 | 4.1:-29473638 | None:intergenic |
| GTGGCAGCGGATCAAGGAAC+CGG | 0.504636 | 4.1:+29473619 | MS.gene52125:CDS |
| ACATAATGTTGCTGCCAAAA+GGG | 0.509144 | 4.1:-29471112 | None:intergenic |
| GCATCTAAAATGGACTAACT+TGG | 0.509507 | 4.1:+29473666 | MS.gene52125:CDS |
| ACTCTTTCCCCTAGTTTCTG+AGG | 0.512619 | 4.1:-29470282 | None:intergenic |
| GGAGGAGGAGGATGTGTGGG+TGG | 0.513176 | 4.1:-29468057 | None:intergenic |
| AAAACGCTAACGGATTCAAT+TGG | 0.514279 | 4.1:+29468199 | MS.gene52125:CDS |
| AGAGGCTCCTTTGTCCCTTG+GGG | 0.517659 | 4.1:+29473711 | MS.gene52125:CDS |
| GGATGAAAGCATCGCCCTAT+CGG | 0.519107 | 4.1:-29469738 | None:intergenic |
| TTTGTTGCAGGATACGTGCT+CGG | 0.521238 | 4.1:+29482469 | MS.gene52125:intron |
| TGACACAAAATTTAACGTAT+GGG | 0.521710 | 4.1:+29481656 | MS.gene52125:CDS |
| ATCCGACTCCTCAGAAACTA+GGG | 0.524475 | 4.1:+29470274 | MS.gene52125:CDS |
| AACGAGATTCGCCGGACCAA+GGG | 0.524860 | 4.1:-29468087 | None:intergenic |
| TACATTGAATGACTGCCATC+TGG | 0.524888 | 4.1:+29472000 | MS.gene52125:CDS |
| TCAAGATCAACTTCGTATCC+GGG | 0.528329 | 4.1:-29482322 | None:intergenic |
| GAACCCTGGTTCCATATCAA+TGG | 0.528997 | 4.1:+29471200 | MS.gene52125:CDS |
| AGTGATTCCTCAAGGACGTC+AGG | 0.530335 | 4.1:-29473400 | None:intergenic |
| CAGTTAATGATGGCCGTTTG+GGG | 0.530395 | 4.1:+29469573 | MS.gene52125:CDS |
| TACTGCAGAGTTTAGCCGGA+TGG | 0.530577 | 4.1:-29482362 | None:intergenic |
| TTCTTCCCCATATTGCCGAC+AGG | 0.531443 | 4.1:+29481174 | MS.gene52125:CDS |
| GATTTGGTCTGGTTTCCGAT+AGG | 0.531671 | 4.1:+29469723 | MS.gene52125:CDS |
| CTATGTTAACTTTGCGCCTG+AGG | 0.532565 | 4.1:+29468327 | MS.gene52125:CDS |
| GTGTGCATTCTGCCAGAGAA+TGG | 0.532636 | 4.1:+29471420 | MS.gene52125:CDS |
| ACCTTCATTAATAATCGTGA+TGG | 0.532805 | 4.1:-29470495 | None:intergenic |
| CATACACGGAACAAATATGA+TGG | 0.535425 | 4.1:+29473424 | MS.gene52125:CDS |
| TGAGTTTCTTAATGGAACCC+TGG | 0.537239 | 4.1:+29471186 | MS.gene52125:CDS |
| AGAATCTTGGATCCACCAAA+TGG | 0.538148 | 4.1:-29473592 | None:intergenic |
| CTATTGTAAAAGATGCCATC+CGG | 0.538715 | 4.1:+29482347 | MS.gene52125:CDS |
| GCTGGAAATAAAACCAGTGC+AGG | 0.539488 | 4.1:-29472876 | None:intergenic |
| AAGAAAACACTTCAAATGCA+TGG | 0.540074 | 4.1:+29471362 | MS.gene52125:CDS |
| AAAGCTTGAGCTGTAATTCG+AGG | 0.540638 | 4.1:-29471304 | None:intergenic |
| AGATAGTGTTGCTGTTGCTA+GGG | 0.540887 | 4.1:-29467966 | None:intergenic |
| ATGAAGTTTGTAGCAGAACA+TGG | 0.541198 | 4.1:+29472951 | MS.gene52125:CDS |
| CCATCATCCCCACCTCATCA+TGG | 0.541240 | 4.1:+29467993 | MS.gene52125:CDS |
| GAATTTAGCTCAGTTAATGA+TGG | 0.543918 | 4.1:+29469563 | MS.gene52125:CDS |
| CAAGATTCTCATTGTGGCAG+CGG | 0.544034 | 4.1:+29473606 | MS.gene52125:CDS |
| TGAATTTCTCGTAGAAAGAG+TGG | 0.544307 | 4.1:-29469658 | None:intergenic |
| AATTTACCTGAAATCCTACC+TGG | 0.545327 | 4.1:+29473793 | MS.gene52125:CDS |
| TGAAGGTAAACAAGTTAGTG+TGG | 0.550708 | 4.1:+29470511 | MS.gene52125:CDS |
| GAGGCTCCTTTGTCCCTTGG+GGG | 0.551384 | 4.1:+29473712 | MS.gene52125:CDS |
| ATTTAACGTATGGGTTCTCA+GGG | 0.551584 | 4.1:+29481665 | MS.gene52125:CDS |
| TGGATGCATAAATGCCACTA+AGG | 0.552198 | 4.1:-29480286 | None:intergenic |
| AGTTAATGATGGCCGTTTGG+GGG | 0.552373 | 4.1:+29469574 | MS.gene52125:CDS |
| ACATGTTCTTCAAGGCCAAA+GGG | 0.553196 | 4.1:+29471228 | MS.gene52125:CDS |
| GGATCTGGGAAGTGAAATTG+TGG | 0.554937 | 4.1:-29468030 | None:intergenic |
| ATTTACCAGTATCAAATGGA+TGG | 0.556923 | 4.1:+29473500 | MS.gene52125:CDS |
| CACCATATAATGGGCTTCAG+TGG | 0.560043 | 4.1:+29469339 | MS.gene52125:CDS |
| ATAAATCTGCTATAGAGCCT+GGG | 0.563424 | 4.1:+29470786 | MS.gene52125:CDS |
| CGCCGGACCAAGGGAGAGTG+AGG | 0.563751 | 4.1:-29468078 | None:intergenic |
| TGTTAACTTTGCGCCTGAGG+AGG | 0.565001 | 4.1:+29468330 | MS.gene52125:CDS |
| TTACATTGTCCAGCAAAAGA+AGG | 0.566005 | 4.1:+29470583 | MS.gene52125:CDS |
| ACTTCTCAAGAAGATCATAC+AGG | 0.566191 | 4.1:+29470734 | MS.gene52125:CDS |
| AACATGTTCTTCAAGGCCAA+AGG | 0.567288 | 4.1:+29471227 | MS.gene52125:CDS |
| ATTGTCCAGCAAAAGAAGGA+TGG | 0.572018 | 4.1:+29470587 | MS.gene52125:CDS |
| GTTAATGATGGCCGTTTGGG+GGG | 0.572730 | 4.1:+29469575 | MS.gene52125:CDS |
| ATGATAGAATACTGGCGTCA+AGG | 0.573169 | 4.1:+29469367 | MS.gene52125:CDS |
| TCATCTCCAATTTCAGGTAG+CGG | 0.574462 | 4.1:-29481714 | None:intergenic |
| GAAGTATATCGGGCCATCAA+GGG | 0.576740 | 4.1:+29471457 | MS.gene52125:CDS |
| GAACGAGATTCGCCGGACCA+AGG | 0.577114 | 4.1:-29468088 | None:intergenic |
| AAAACTAAGTTCTCTAGCAA+AGG | 0.577164 | 4.1:+29470610 | MS.gene52125:CDS |
| TGAACTAATGTCAATATCAC+CGG | 0.581811 | 4.1:-29470654 | None:intergenic |
| CATAAGGGAACGAGATTCGC+CGG | 0.582012 | 4.1:-29468095 | None:intergenic |
| TAGTTGTCACTACATAATCA+AGG | 0.585626 | 4.1:-29473825 | None:intergenic |
| GAATCAGTTGTATCATGAGA+TGG | 0.586159 | 4.1:+29473927 | MS.gene52125:CDS |
| GGATCAACTATGACCAAAGA+CGG | 0.588670 | 4.1:-29471091 | None:intergenic |
| TGGTGTTAGTGTTGATGGAG+TGG | 0.589490 | 4.1:+29468219 | MS.gene52125:CDS |
| AGGCTTCTTTCGACAAAAGG+TGG | 0.591222 | 4.1:+29482674 | MS.gene52125:CDS |
| ATCAGAGGAGGGCATGTGCA+AGG | 0.596160 | 4.1:+29469493 | MS.gene52125:intron |
| GAAAATGATTGACAGTGCGA+AGG | 0.596735 | 4.1:+29468360 | MS.gene52125:CDS |
| ATTAACAAATGGAGGACGCA+TGG | 0.598761 | 4.1:-29471254 | None:intergenic |
| AAATCCAAATTAACAAATGG+AGG | 0.598901 | 4.1:-29471262 | None:intergenic |
| TCTTCTTTATGAAGGAGATG+TGG | 0.599726 | 4.1:+29472914 | MS.gene52125:CDS |
| ACCAGAATCAGCAACACCTA+AGG | 0.600701 | 4.1:-29469759 | None:intergenic |
| AAATACCTGTCGGCAATATG+GGG | 0.600836 | 4.1:-29481179 | None:intergenic |
| AAAGACGTAGATGCAACAAA+CGG | 0.602644 | 4.1:+29480308 | MS.gene52125:CDS |
| TTGTATCATGAGATGGCAGA+AGG | 0.603311 | 4.1:+29473934 | MS.gene52125:CDS |
| TGATTCCTGTAGCAGTTCTG+TGG | 0.604466 | 4.1:+29473329 | MS.gene52125:intron |
| ATCGTCGTTGATAACGGGAT+CGG | 0.605107 | 4.1:-29467932 | None:intergenic |
| GCTACTTGTGCATTCTTACG+TGG | 0.605254 | 4.1:-29480734 | None:intergenic |
| GAGGATTTGCCATGATGAGG+TGG | 0.606020 | 4.1:-29468002 | None:intergenic |
| ACATCTCCTTCATAAAGAAG+AGG | 0.606558 | 4.1:-29472912 | None:intergenic |
| TGGATCCAAGATTCTCATTG+TGG | 0.609398 | 4.1:+29473600 | MS.gene52125:CDS |
| TTTGCAACCTGACGTCCTTG+AGG | 0.610567 | 4.1:+29473393 | MS.gene52125:CDS |
| CAAATTCTTCAAATGAACAG+GGG | 0.614008 | 4.1:-29469628 | None:intergenic |
| CAGGTGATATATACCAGACC+CGG | 0.614257 | 4.1:+29482304 | MS.gene52125:intron |
| AACAACTTGAACACCCAGCT+AGG | 0.615039 | 4.1:-29469802 | None:intergenic |
| CCAAATCTATGACGTTCAGA+AGG | 0.616050 | 4.1:-29469707 | None:intergenic |
| ATCAGGAATCAAAACTTACA+TGG | 0.616920 | 4.1:+29473367 | MS.gene52125:CDS |
| ATGAGATGGCAGAAGGAGCG+TGG | 0.616928 | 4.1:+29473941 | MS.gene52125:CDS |
| CGGACCAAGGGAGAGTGAGG+AGG | 0.617726 | 4.1:-29468075 | None:intergenic |
| GTTCTGGTTAAGGATAAAAG+AGG | 0.619525 | 4.1:-29473757 | None:intergenic |
| GTTTCTATCCGAAATTATCG+TGG | 0.620437 | 4.1:+29470392 | MS.gene52125:CDS |
| AACAAATATGATGGAGCCCT+AGG | 0.620788 | 4.1:+29473433 | MS.gene52125:CDS |
| CAAGGAAGTAAATTCCAGGT+AGG | 0.620920 | 4.1:-29473807 | None:intergenic |
| GAAGAATCCATCATAGATCA+CGG | 0.620930 | 4.1:+29470899 | MS.gene52125:CDS |
| GTCGTTGATAACGGGATCGG+AGG | 0.621409 | 4.1:-29467929 | None:intergenic |
| AGAAACATTGCCTCATGTGG+TGG | 0.624178 | 4.1:+29473525 | MS.gene52125:CDS |
| ACCGAACCGACCACCACATG+AGG | 0.626102 | 4.1:-29473535 | None:intergenic |
| AAGTGAAATTGTGGGAAGTG+AGG | 0.626286 | 4.1:-29468021 | None:intergenic |
| TCAAATTCTTCAAATGAACA+GGG | 0.626668 | 4.1:-29469629 | None:intergenic |
| GAGCTAAATTCCCAGAGCGA+AGG | 0.626897 | 4.1:-29469551 | None:intergenic |
| GTTTCCATCAGAAGAACCAT+CGG | 0.628260 | 4.1:-29470966 | None:intergenic |
| GAAATAGATAGTTCCACCGA+TGG | 0.628302 | 4.1:+29470950 | MS.gene52125:CDS |
| ACATTGCCTCATGTGGTGGT+CGG | 0.632364 | 4.1:+29473529 | MS.gene52125:CDS |
| CTACTGACTTCAGTACCAGA+TGG | 0.633292 | 4.1:-29472015 | None:intergenic |
| TCAACAAATAGAAGTACTGA+CGG | 0.638383 | 4.1:-29470245 | None:intergenic |
| AGGATTTGCCATGATGAGGT+GGG | 0.639885 | 4.1:-29468001 | None:intergenic |
| GTGTATGAAGTGATTCCTCA+AGG | 0.640215 | 4.1:-29473408 | None:intergenic |
| GCAAGAAACATTGCCTCATG+TGG | 0.648648 | 4.1:+29473522 | MS.gene52125:CDS |
| GGTAGTACTGCAATGACAGA+AGG | 0.652965 | 4.1:+29470755 | MS.gene52125:CDS |
| GATAGAATACTGGCGTCAAG+GGG | 0.654043 | 4.1:+29469369 | MS.gene52125:CDS |
| GTCATGTTGATACATTAAAG+GGG | 0.658390 | 4.1:+29471479 | MS.gene52125:CDS |
| AGATAAAATACCGAATCAGG+TGG | 0.658997 | 4.1:+29473459 | MS.gene52125:CDS |
| TCCATCAGAAGAACCATCGG+TGG | 0.661429 | 4.1:-29470963 | None:intergenic |
| GGATTTGCCATGATGAGGTG+GGG | 0.663873 | 4.1:-29468000 | None:intergenic |
| AAGGGGCAAGACTAACCAGA+AGG | 0.666796 | 4.1:+29469386 | MS.gene52125:CDS |
| TTGAGGAATCACTTCATACA+CGG | 0.669238 | 4.1:+29473410 | MS.gene52125:CDS |
| GATCTGGGAAGTGAAATTGT+GGG | 0.673575 | 4.1:-29468029 | None:intergenic |
| TCATGTTGATACATTAAAGG+GGG | 0.674539 | 4.1:+29471480 | MS.gene52125:CDS |
| AGTGAGGATTTGCCATGATG+AGG | 0.680148 | 4.1:-29468005 | None:intergenic |
| TGTTCTTCAAGGCCAAAGGG+AGG | 0.687403 | 4.1:+29471231 | MS.gene52125:CDS |
| TCCGACTCCTCAGAAACTAG+GGG | 0.688067 | 4.1:+29470275 | MS.gene52125:CDS |
| TGACCATTGATATGGAACCA+GGG | 0.691421 | 4.1:-29471203 | None:intergenic |
| CATGTTGATACATTAAAGGG+GGG | 0.712904 | 4.1:+29471481 | MS.gene52125:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 29467923 | 29482732 | 29467923 | ID=MS.gene52125 |
| chr4.1 | mRNA | 29467923 | 29482732 | 29467923 | ID=MS.gene52125.t1;Parent=MS.gene52125 |
| chr4.1 | exon | 29467923 | 29468502 | 29467923 | ID=MS.gene52125.t1.exon1;Parent=MS.gene52125.t1 |
| chr4.1 | CDS | 29467923 | 29468502 | 29467923 | ID=cds.MS.gene52125.t1;Parent=MS.gene52125.t1 |
| chr4.1 | exon | 29469334 | 29469414 | 29469334 | ID=MS.gene52125.t1.exon2;Parent=MS.gene52125.t1 |
| chr4.1 | CDS | 29469334 | 29469414 | 29469334 | ID=cds.MS.gene52125.t1;Parent=MS.gene52125.t1 |
| chr4.1 | exon | 29469498 | 29469892 | 29469498 | ID=MS.gene52125.t1.exon3;Parent=MS.gene52125.t1 |
| chr4.1 | CDS | 29469498 | 29469892 | 29469498 | ID=cds.MS.gene52125.t1;Parent=MS.gene52125.t1 |
| chr4.1 | exon | 29470197 | 29471514 | 29470197 | ID=MS.gene52125.t1.exon4;Parent=MS.gene52125.t1 |
| chr4.1 | CDS | 29470197 | 29471514 | 29470197 | ID=cds.MS.gene52125.t1;Parent=MS.gene52125.t1 |
| chr4.1 | exon | 29471948 | 29472042 | 29471948 | ID=MS.gene52125.t1.exon5;Parent=MS.gene52125.t1 |
| chr4.1 | CDS | 29471948 | 29472042 | 29471948 | ID=cds.MS.gene52125.t1;Parent=MS.gene52125.t1 |
| chr4.1 | exon | 29472864 | 29473005 | 29472864 | ID=MS.gene52125.t1.exon6;Parent=MS.gene52125.t1 |
| chr4.1 | CDS | 29472864 | 29473005 | 29472864 | ID=cds.MS.gene52125.t1;Parent=MS.gene52125.t1 |
| chr4.1 | exon | 29473344 | 29473970 | 29473344 | ID=MS.gene52125.t1.exon7;Parent=MS.gene52125.t1 |
| chr4.1 | CDS | 29473344 | 29473970 | 29473344 | ID=cds.MS.gene52125.t1;Parent=MS.gene52125.t1 |
| chr4.1 | exon | 29480285 | 29480352 | 29480285 | ID=MS.gene52125.t1.exon8;Parent=MS.gene52125.t1 |
| chr4.1 | CDS | 29480285 | 29480352 | 29480285 | ID=cds.MS.gene52125.t1;Parent=MS.gene52125.t1 |
| chr4.1 | exon | 29480710 | 29480778 | 29480710 | ID=MS.gene52125.t1.exon9;Parent=MS.gene52125.t1 |
| chr4.1 | CDS | 29480710 | 29480778 | 29480710 | ID=cds.MS.gene52125.t1;Parent=MS.gene52125.t1 |
| chr4.1 | exon | 29481106 | 29481195 | 29481106 | ID=MS.gene52125.t1.exon10;Parent=MS.gene52125.t1 |
| chr4.1 | CDS | 29481106 | 29481195 | 29481106 | ID=cds.MS.gene52125.t1;Parent=MS.gene52125.t1 |
| chr4.1 | exon | 29481654 | 29481743 | 29481654 | ID=MS.gene52125.t1.exon11;Parent=MS.gene52125.t1 |
| chr4.1 | CDS | 29481654 | 29481743 | 29481654 | ID=cds.MS.gene52125.t1;Parent=MS.gene52125.t1 |
| chr4.1 | exon | 29482307 | 29482387 | 29482307 | ID=MS.gene52125.t1.exon12;Parent=MS.gene52125.t1 |
| chr4.1 | CDS | 29482307 | 29482387 | 29482307 | ID=cds.MS.gene52125.t1;Parent=MS.gene52125.t1 |
| chr4.1 | exon | 29482479 | 29482524 | 29482479 | ID=MS.gene52125.t1.exon13;Parent=MS.gene52125.t1 |
| chr4.1 | CDS | 29482479 | 29482524 | 29482479 | ID=cds.MS.gene52125.t1;Parent=MS.gene52125.t1 |
| chr4.1 | exon | 29482656 | 29482732 | 29482656 | ID=MS.gene52125.t1.exon14;Parent=MS.gene52125.t1 |
| chr4.1 | CDS | 29482656 | 29482732 | 29482656 | ID=cds.MS.gene52125.t1;Parent=MS.gene52125.t1 |
| Gene Sequence |
| Protein sequence |
