Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52227.t1 | XP_003623909.1 | 96 | 250 | 3 | 1 | 1 | 250 | 1 | 243 | 2.90E-130 | 474.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52227.t1 | Q9LX74 | 68.0 | 250 | 69 | 2 | 1 | 250 | 1 | 239 | 1.3e-94 | 347.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52227.t1 | G7L3K7 | 96.0 | 250 | 3 | 1 | 1 | 250 | 1 | 243 | 2.1e-130 | 474.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene85900 | MS.gene52227 | PPI |
| MS.gene52227 | MS.gene053057 | PPI |
| MS.gene52227 | MS.gene024674 | PPI |
| MS.gene21656 | MS.gene52227 | PPI |
| MS.gene52227 | MS.gene22316 | PPI |
| MS.gene82830 | MS.gene52227 | PPI |
| MS.gene52227 | MS.gene023131 | PPI |
| MS.gene52227 | MS.gene032627 | PPI |
| MS.gene52227 | MS.gene028322 | PPI |
| MS.gene52227 | MS.gene53118 | PPI |
| MS.gene52227 | MS.gene78555 | PPI |
| MS.gene52227 | MS.gene36469 | PPI |
| MS.gene52227 | MS.gene35136 | PPI |
| MS.gene52227 | MS.gene072735 | PPI |
| MS.gene52227 | MS.gene55323 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52227.t1 | MTR_7g076910 | 96.000 | 250 | 3 | 1 | 1 | 250 | 1 | 243 | 1.01e-179 | 493 |
| MS.gene52227.t1 | MTR_7g116920 | 29.231 | 195 | 111 | 7 | 5 | 188 | 10 | 188 | 1.06e-16 | 77.0 |
| MS.gene52227.t1 | MTR_4g058720 | 32.544 | 169 | 99 | 4 | 5 | 167 | 33 | 192 | 3.36e-16 | 76.3 |
| MS.gene52227.t1 | MTR_7g116920 | 27.957 | 186 | 107 | 7 | 14 | 188 | 1 | 170 | 1.10e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52227.t1 | AT3G46210 | 68.033 | 244 | 71 | 1 | 1 | 244 | 1 | 237 | 1.62e-127 | 361 |
| MS.gene52227.t1 | AT3G46210 | 68.033 | 244 | 71 | 1 | 1 | 244 | 1 | 237 | 1.62e-127 | 361 |
| MS.gene52227.t1 | AT3G46210 | 68.033 | 244 | 71 | 1 | 1 | 244 | 1 | 237 | 1.62e-127 | 361 |
| MS.gene52227.t1 | AT3G46210 | 68.033 | 244 | 71 | 1 | 1 | 244 | 1 | 237 | 1.62e-127 | 361 |
| MS.gene52227.t1 | AT3G46210 | 68.033 | 244 | 71 | 1 | 1 | 244 | 1 | 237 | 1.62e-127 | 361 |
| MS.gene52227.t1 | AT3G46210 | 68.033 | 244 | 71 | 1 | 1 | 244 | 1 | 237 | 1.62e-127 | 361 |
| MS.gene52227.t1 | AT3G46210 | 68.033 | 244 | 71 | 1 | 1 | 244 | 1 | 237 | 1.62e-127 | 361 |
| MS.gene52227.t1 | AT3G61620 | 30.256 | 195 | 109 | 5 | 5 | 188 | 10 | 188 | 6.39e-21 | 88.6 |
| MS.gene52227.t1 | AT3G61620 | 30.256 | 195 | 109 | 5 | 5 | 188 | 10 | 188 | 6.39e-21 | 88.6 |
| MS.gene52227.t1 | AT2G07110 | 42.857 | 119 | 43 | 4 | 22 | 122 | 8 | 119 | 1.08e-19 | 83.2 |
| MS.gene52227.t1 | AT4G27490 | 31.214 | 173 | 104 | 4 | 1 | 167 | 30 | 193 | 1.02e-15 | 74.7 |
| MS.gene52227.t1 | AT4G27490 | 31.214 | 173 | 104 | 4 | 1 | 167 | 30 | 193 | 1.02e-15 | 74.7 |
| MS.gene52227.t1 | AT4G27490 | 31.214 | 173 | 104 | 4 | 1 | 167 | 30 | 193 | 1.02e-15 | 74.7 |
| MS.gene52227.t1 | AT4G27490 | 31.395 | 172 | 98 | 5 | 1 | 160 | 30 | 193 | 3.17e-14 | 69.7 |
| MS.gene52227.t1 | AT4G27490 | 31.395 | 172 | 98 | 5 | 1 | 160 | 30 | 193 | 3.17e-14 | 69.7 |
| MS.gene52227.t1 | AT4G27490 | 31.395 | 172 | 98 | 5 | 1 | 160 | 30 | 193 | 3.17e-14 | 69.7 |
Find 68 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCATCCATTGAAGTTATT+TGG | 0.147111 | 7.4:-28805944 | MS.gene52227:CDS |
| AACTACCAGCCAAATGTCTT+AGG | 0.238586 | 7.4:+28805225 | None:intergenic |
| TTCTTCTTGGTTCCGGCTTT+AGG | 0.251170 | 7.4:+28805981 | None:intergenic |
| AAAGTTCTGGCTGCAGTTTA+TGG | 0.252618 | 7.4:-28806005 | MS.gene52227:CDS |
| ACGACAGAAACAGTTGTATT+TGG | 0.287215 | 7.4:+28804122 | None:intergenic |
| TTGTGGCTCGTCCTCGTTCT+AGG | 0.303129 | 7.4:+28803798 | None:intergenic |
| AGATAGTAATTCTATTATAT+TGG | 0.304530 | 7.4:-28805099 | MS.gene52227:CDS |
| CAAATGTCTTAGGGGTATTC+CGG | 0.385630 | 7.4:+28805235 | None:intergenic |
| CGCCCATGTGGCTGAGCCAT+GGG | 0.387139 | 7.4:+28806040 | None:intergenic |
| AGCTAGCGGCCTCAGTTGAT+TGG | 0.391159 | 7.4:+28806088 | None:intergenic |
| TGACCAACGTGTCCTGTATT+AGG | 0.391932 | 7.4:+28805918 | None:intergenic |
| GATGCCTCACGAGTAGATTT+CGG | 0.395420 | 7.4:+28803737 | None:intergenic |
| GCGCCCATGTGGCTGAGCCA+TGG | 0.404361 | 7.4:+28806039 | None:intergenic |
| CGGAATACCCCTAAGACATT+TGG | 0.418470 | 7.4:-28805234 | MS.gene52227:CDS |
| CGCAGCATGCGCTGCACTTG+TGG | 0.433168 | 7.4:-28805261 | MS.gene52227:CDS |
| AGGCTTCCAAATAACTTCAA+TGG | 0.433202 | 7.4:+28805938 | None:intergenic |
| GTTACACATGGCGCTATGTC+AGG | 0.450735 | 7.4:-28804041 | MS.gene52227:intron |
| CTGAGCCATGGGCTCGGTGG+AGG | 0.456856 | 7.4:+28806051 | None:intergenic |
| GTTATTTGGAAGCCTAATAC+AGG | 0.457823 | 7.4:-28805930 | MS.gene52227:CDS |
| CCCGCCTGTGATGATTTCTC+TGG | 0.462077 | 7.4:+28804098 | None:intergenic |
| TGATTGGGACTCCTTCCATC+AGG | 0.463824 | 7.4:+28806104 | None:intergenic |
| ACTACCAGCCAAATGTCTTA+GGG | 0.470199 | 7.4:+28805226 | None:intergenic |
| GCTAGCGGCCTCAGTTGATT+GGG | 0.478093 | 7.4:+28806089 | None:intergenic |
| GCAAGGAGAAACGAAAGTTC+TGG | 0.479894 | 7.4:-28806018 | MS.gene52227:CDS |
| TGCGCTGCACTTGTGGATGC+CGG | 0.480910 | 7.4:-28805254 | MS.gene52227:CDS |
| ACACGTTGGTCAAGCGGATA+GGG | 0.485898 | 7.4:-28805907 | MS.gene52227:CDS |
| GAGCCCATGGCTCAGCCACA+TGG | 0.489486 | 7.4:-28806043 | MS.gene52227:CDS |
| ATGTGGCTGAGCCATGGGCT+CGG | 0.490093 | 7.4:+28806045 | None:intergenic |
| CATGCTGCGTTTATTGCACA+TGG | 0.494278 | 7.4:+28805275 | None:intergenic |
| TCTGTCCTCCACCGAGCCCA+TGG | 0.508453 | 7.4:-28806056 | MS.gene52227:CDS |
| GGCTCAGCCACATGGGCGCA+AGG | 0.519438 | 7.4:-28806035 | MS.gene52227:CDS |
| ACTTCTGTTATAGTCCAGGC+AGG | 0.520075 | 7.4:-28805816 | MS.gene52227:CDS |
| TTCAGACAACCTTTGAGTTG+TGG | 0.523471 | 7.4:+28803781 | None:intergenic |
| ATAACAGAAGTAGTGGTGTT+GGG | 0.528062 | 7.4:+28805828 | None:intergenic |
| TATAACAGAAGTAGTGGTGT+TGG | 0.529283 | 7.4:+28805827 | None:intergenic |
| CACTACTTCTGTTATAGTCC+AGG | 0.543010 | 7.4:-28805820 | MS.gene52227:CDS |
| ACTCGTGAGGCATCTAAAGC+TGG | 0.545709 | 7.4:-28803728 | MS.gene52227:CDS |
| GGCAATGATCCCATGGCACA+TGG | 0.547079 | 7.4:-28804077 | MS.gene52227:CDS |
| AATGATATTGAAGAAAACCT+TGG | 0.551446 | 7.4:-28805877 | MS.gene52227:CDS |
| GACACGTTGGTCAAGCGGAT+AGG | 0.555141 | 7.4:-28805908 | MS.gene52227:CDS |
| CTACCAGCCAAATGTCTTAG+GGG | 0.562498 | 7.4:+28805227 | None:intergenic |
| GTCCTCGTTCTAGGCAATGA+AGG | 0.565244 | 7.4:+28803807 | None:intergenic |
| ACGAATGCAGATGCTTTCCA+AGG | 0.570974 | 7.4:+28805860 | None:intergenic |
| TACAGGACACGTTGGTCAAG+CGG | 0.571194 | 7.4:-28805913 | MS.gene52227:CDS |
| AGCCCATGGCTCAGCCACAT+GGG | 0.573081 | 7.4:-28806042 | MS.gene52227:CDS |
| CGTTTCTCCTTGCGCCCATG+TGG | 0.574683 | 7.4:+28806028 | None:intergenic |
| ATGGAGATAGACAGACCTGA+TGG | 0.574980 | 7.4:-28806119 | MS.gene52227:CDS |
| GCAGTTTATGGACCTAAAGC+CGG | 0.580294 | 7.4:-28805993 | MS.gene52227:CDS |
| AGGATACAGCACCATCGTCA+TGG | 0.589637 | 7.4:+28805685 | None:intergenic |
| AAGGAAGTGAGAAACCTGCC+TGG | 0.595562 | 7.4:+28805802 | None:intergenic |
| TGGCTGAGCCATGGGCTCGG+TGG | 0.606885 | 7.4:+28806048 | None:intergenic |
| CCAGAGAAATCATCACAGGC+GGG | 0.610323 | 7.4:-28804098 | MS.gene52227:CDS |
| GCCAGAGAAATCATCACAGG+CGG | 0.611420 | 7.4:-28804099 | MS.gene52227:CDS |
| CTGGACTATAACAGAAGTAG+TGG | 0.614747 | 7.4:+28805821 | None:intergenic |
| CGTGCCAGAGAAATCATCAC+AGG | 0.616708 | 7.4:-28804102 | MS.gene52227:CDS |
| ACAGGCGGGCAATGATCCCA+TGG | 0.618979 | 7.4:-28804084 | MS.gene52227:CDS |
| GTGATGATTCCATGTGCCAT+GGG | 0.621550 | 7.4:+28804068 | None:intergenic |
| TGTGATGATTCCATGTGCCA+TGG | 0.630250 | 7.4:+28804067 | None:intergenic |
| ATACCCCTAAGACATTTGGC+TGG | 0.637263 | 7.4:-28805230 | MS.gene52227:intron |
| AGATAGACAGACCTGATGGA+AGG | 0.649068 | 7.4:-28806115 | MS.gene52227:CDS |
| TACCTTCATTGCCTAGAACG+AGG | 0.649903 | 7.4:-28803809 | MS.gene52227:CDS |
| GAGGACGAGCCACAACTCAA+AGG | 0.650203 | 7.4:-28803790 | MS.gene52227:CDS |
| ATCATCACATCTGTTACACA+TGG | 0.653258 | 7.4:-28804053 | MS.gene52227:CDS |
| AGCGCCGAAATCTACTCGTG+AGG | 0.671984 | 7.4:-28803741 | MS.gene52227:CDS |
| ACAGAATGAGAGCAAGCTAG+CGG | 0.683024 | 7.4:+28806074 | None:intergenic |
| GAAGGAGTCCCAATCAACTG+AGG | 0.713387 | 7.4:-28806097 | MS.gene52227:CDS |
| ATGCAGGTTGTCCATGACGA+TGG | 0.713615 | 7.4:-28805696 | MS.gene52227:intron |
| AAGCCTAATACAGGACACGT+TGG | 0.717877 | 7.4:-28805921 | MS.gene52227:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAAAAAA+AGG | + | chr7.4:28804802-28804821 | None:intergenic | 0.0% |
| !! | ATATTAGAATTGAATTAAAT+AGG | + | chr7.4:28804181-28804200 | None:intergenic | 10.0% |
| !!! | TTATTTTATAAATATGTTTC+TGG | - | chr7.4:28804505-28804524 | MS.gene52227:intron | 10.0% |
| !! | AGATAGTAATTCTATTATAT+TGG | - | chr7.4:28804744-28804763 | MS.gene52227:intron | 15.0% |
| !! | TTTAAACAAAGTTCATAAAT+TGG | - | chr7.4:28805606-28805625 | MS.gene52227:intron | 15.0% |
| !!! | AAATATTGATGATTTTCAAT+TGG | - | chr7.4:28804332-28804351 | MS.gene52227:intron | 15.0% |
| !!! | AATAAAATATTTTTAACTCC+AGG | + | chr7.4:28804087-28804106 | None:intergenic | 15.0% |
| !! | AATTACTTTAACATCCTTTA+AGG | - | chr7.4:28805169-28805188 | MS.gene52227:intron | 20.0% |
| !! | TGTATTTGGAAAAACTAAAT+AGG | + | chr7.4:28805710-28805729 | None:intergenic | 20.0% |
| !!! | TTTTGCATACTAGAAATATA+TGG | - | chr7.4:28805260-28805279 | MS.gene52227:CDS | 20.0% |
| ! | AATCTTGATTTCTACTAGTT+AGG | - | chr7.4:28804262-28804281 | MS.gene52227:intron | 25.0% |
| ! | AATGATATTGAAGAAAACCT+TGG | - | chr7.4:28803966-28803985 | MS.gene52227:intron | 25.0% |
| ! | AGTTAGAGTTAATGAACTAA+AGG | + | chr7.4:28804063-28804082 | None:intergenic | 25.0% |
| ! | AGTTAGGATATAAATCATTG+TGG | - | chr7.4:28804278-28804297 | MS.gene52227:intron | 25.0% |
| ! | ATAATTTAACCATTATCCAC+AGG | + | chr7.4:28804937-28804956 | None:intergenic | 25.0% |
| ! | ATATTCAATTGCATGTTGTA+TGG | - | chr7.4:28805497-28805516 | MS.gene52227:intron | 25.0% |
| ! | CCACTAAAAGAATATTAAAC+AGG | + | chr7.4:28806009-28806028 | None:intergenic | 25.0% |
| ! | TAACATTTATCGTACATGAA+GGG | + | chr7.4:28805073-28805092 | None:intergenic | 25.0% |
| ! | TAATTTAACCATTATCCACA+GGG | + | chr7.4:28804936-28804955 | None:intergenic | 25.0% |
| ! | TCATGTACACAAATAAACAT+TGG | + | chr7.4:28805386-28805405 | None:intergenic | 25.0% |
| ! | TCTAGTTATTCAACTCAAAT+AGG | + | chr7.4:28805289-28805308 | None:intergenic | 25.0% |
| !! | ATGAACTTTGTTTAAACTAC+TGG | + | chr7.4:28805602-28805621 | None:intergenic | 25.0% |
| !! | CCTGTTTAATATTCTTTTAG+TGG | - | chr7.4:28806006-28806025 | MS.gene52227:CDS | 25.0% |
| !! | TGAACTTTGTTTAAACTACT+GGG | + | chr7.4:28805601-28805620 | None:intergenic | 25.0% |
| !!! | AAACAACTATGCTTTGTTTA+TGG | + | chr7.4:28805566-28805585 | None:intergenic | 25.0% |
| !!! | AACAACTATGCTTTGTTTAT+GGG | + | chr7.4:28805565-28805584 | None:intergenic | 25.0% |
| !!! | ATTGATGATTTTCAATTGGT+TGG | - | chr7.4:28804336-28804355 | MS.gene52227:intron | 25.0% |
| AAGCATCCATTGAAGTTATT+TGG | - | chr7.4:28803899-28803918 | MS.gene52227:intron | 30.0% | |
| CTAGGTTAATCAAACCTTAA+AGG | + | chr7.4:28805186-28805205 | None:intergenic | 30.0% | |
| GTAACATTTATCGTACATGA+AGG | + | chr7.4:28805074-28805093 | None:intergenic | 30.0% | |
| ! | AAAGGTTGTCTGAATTTTTG+AGG | - | chr7.4:28806071-28806090 | MS.gene52227:CDS | 30.0% |
| ! | AGTCTGCATTTTACTTTCTT+AGG | - | chr7.4:28804370-28804389 | MS.gene52227:intron | 30.0% |
| ! | ATTTTCATTCTTCTTGGTTC+CGG | + | chr7.4:28803872-28803891 | None:intergenic | 30.0% |
| ! | CATGAACTATTTCTTAGATC+AGG | + | chr7.4:28805462-28805481 | None:intergenic | 30.0% |
| ! | TTCTGGATTTTCATTCTTCT+TGG | + | chr7.4:28803878-28803897 | None:intergenic | 30.0% |
| !! | ACATTCTGTTTCTAATATGC+AGG | - | chr7.4:28804131-28804150 | MS.gene52227:CDS | 30.0% |
| !! | ACTTGTTGGTTATTGTCTTT+TGG | - | chr7.4:28804644-28804663 | MS.gene52227:intron | 30.0% |
| !! | TCTAATTTTGTTTAGCTGAC+TGG | + | chr7.4:28804876-28804895 | None:intergenic | 30.0% |
| !!! | CTCAGATTGTTATTTTCGTT+TGG | - | chr7.4:28804237-28804256 | MS.gene52227:intron | 30.0% |
| !!! | TTCAGTGCATTTTTGTTTTC+TGG | - | chr7.4:28805665-28805684 | MS.gene52227:intron | 30.0% |
| AAACCTACAGACAGATTCTA+TGG | + | chr7.4:28805948-28805967 | None:intergenic | 35.0% | |
| ACGACAGAAACAGTTGTATT+TGG | + | chr7.4:28805724-28805743 | None:intergenic | 35.0% | |
| ACTAACAAGAAAGACATTGG+GGG | + | chr7.4:28805843-28805862 | None:intergenic | 35.0% | |
| AGGACTAACAAGAAAGACAT+TGG | + | chr7.4:28805846-28805865 | None:intergenic | 35.0% | |
| AGGCTTCCAAATAACTTCAA+TGG | + | chr7.4:28803908-28803927 | None:intergenic | 35.0% | |
| ATAACAGAAGTAGTGGTGTT+GGG | + | chr7.4:28804018-28804037 | None:intergenic | 35.0% | |
| ATCATCACATCTGTTACACA+TGG | - | chr7.4:28805790-28805809 | MS.gene52227:intron | 35.0% | |
| ATTCCATAGAATCTGTCTGT+AGG | - | chr7.4:28805942-28805961 | MS.gene52227:CDS | 35.0% | |
| CATAAACAAGATGGAAGCAA+CGG | + | chr7.4:28804421-28804440 | None:intergenic | 35.0% | |
| CATTACTTGCAACATCAATG+AGG | + | chr7.4:28805114-28805133 | None:intergenic | 35.0% | |
| GAACAGAAACTAAAATCCCA+AGG | + | chr7.4:28804312-28804331 | None:intergenic | 35.0% | |
| GAATTGTGTACAAGCAACAT+AGG | + | chr7.4:28805642-28805661 | None:intergenic | 35.0% | |
| GACTAACAAGAAAGACATTG+GGG | + | chr7.4:28805844-28805863 | None:intergenic | 35.0% | |
| GGAATCAACACTTCTATTGA+AGG | + | chr7.4:28805866-28805885 | None:intergenic | 35.0% | |
| GGACTAACAAGAAAGACATT+GGG | + | chr7.4:28805845-28805864 | None:intergenic | 35.0% | |
| GTTATTTGGAAGCCTAATAC+AGG | - | chr7.4:28803913-28803932 | MS.gene52227:intron | 35.0% | |
| GTTCATTAACTCTAACTTCC+TGG | - | chr7.4:28804066-28804085 | MS.gene52227:CDS | 35.0% | |
| TATAACAGAAGTAGTGGTGT+TGG | + | chr7.4:28804019-28804038 | None:intergenic | 35.0% | |
| TGTACATGAAGCTAGCTAAT+TGG | - | chr7.4:28805397-28805416 | MS.gene52227:intron | 35.0% | |
| TTACTTTCTTAGGACTGTGA+AGG | - | chr7.4:28804380-28804399 | MS.gene52227:intron | 35.0% | |
| TTGCATGTTGTATGGTTTAG+TGG | - | chr7.4:28805505-28805524 | MS.gene52227:intron | 35.0% | |
| TTTAGATACCCTGTGGATAA+TGG | - | chr7.4:28804925-28804944 | MS.gene52227:intron | 35.0% | |
| TTTGTTTATCACTAGAGCAG+TGG | - | chr7.4:28804466-28804485 | MS.gene52227:intron | 35.0% | |
| ! | TTTTTACTGTAAGTCTCCCA+GGG | - | chr7.4:28805313-28805332 | MS.gene52227:intron | 35.0% |
| !!! | ACCTCTTCTTCTTTTTTGGA+AGG | + | chr7.4:28804772-28804791 | None:intergenic | 35.0% |
| !!! | ACGAACCTCTTCTTCTTTTT+TGG | + | chr7.4:28804776-28804795 | None:intergenic | 35.0% |
| !!! | ACTTCAATGGATGCTTTTTC+TGG | + | chr7.4:28803895-28803914 | None:intergenic | 35.0% |
| !!! | ATTAACCTAGCTGCTTTTAC+TGG | - | chr7.4:28805196-28805215 | MS.gene52227:intron | 35.0% |
| !!! | CCTCTTCTTCTTTTTTGGAA+GGG | + | chr7.4:28804771-28804790 | None:intergenic | 35.0% |
| AACTACCAGCCAAATGTCTT+AGG | + | chr7.4:28804621-28804640 | None:intergenic | 40.0% | |
| ACTACCAGCCAAATGTCTTA+GGG | + | chr7.4:28804620-28804639 | None:intergenic | 40.0% | |
| ACTAGAGCGCATAAACAAGA+TGG | + | chr7.4:28804430-28804449 | None:intergenic | 40.0% | |
| CACTACTTCTGTTATAGTCC+AGG | - | chr7.4:28804023-28804042 | MS.gene52227:intron | 40.0% | |
| CCCTTCCAAAAAAGAAGAAG+AGG | - | chr7.4:28804768-28804787 | MS.gene52227:intron | 40.0% | |
| CTGGACTATAACAGAAGTAG+TGG | + | chr7.4:28804025-28804044 | None:intergenic | 40.0% | |
| GGACTGTGAAGGAACAAAAT+AGG | - | chr7.4:28804391-28804410 | MS.gene52227:intron | 40.0% | |
| GTACAAGCAACATAGGATCA+AGG | + | chr7.4:28805635-28805654 | None:intergenic | 40.0% | |
| TGACTGGATTCACTAGACAA+CGG | + | chr7.4:28804860-28804879 | None:intergenic | 40.0% | |
| ! | AAAGTTCTGGCTGCAGTTTA+TGG | - | chr7.4:28803838-28803857 | MS.gene52227:intron | 40.0% |
| ! | CTGTGAAAAACAGAAGCATG+CGG | + | chr7.4:28805896-28805915 | None:intergenic | 40.0% |
| ! | GTTTTCCAGTAAAAGCAGCT+AGG | + | chr7.4:28805204-28805223 | None:intergenic | 40.0% |
| ! | GTTTTTACTGTAAGTCTCCC+AGG | - | chr7.4:28805312-28805331 | MS.gene52227:intron | 40.0% |
| !! | CAAATGTCTTAGGGGTATTC+CGG | + | chr7.4:28804611-28804630 | None:intergenic | 40.0% |
| !! | TTCAGACAACCTTTGAGTTG+TGG | + | chr7.4:28806065-28806084 | None:intergenic | 40.0% |
| AAGCCTAATACAGGACACGT+TGG | - | chr7.4:28803922-28803941 | MS.gene52227:intron | 45.0% | |
| ACAGAATGAGAGCAAGCTAG+CGG | + | chr7.4:28803772-28803791 | None:intergenic | 45.0% | |
| ACGAATGCAGATGCTTTCCA+AGG | + | chr7.4:28803986-28804005 | None:intergenic | 45.0% | |
| ACTTCTGTTATAGTCCAGGC+AGG | - | chr7.4:28804027-28804046 | MS.gene52227:intron | 45.0% | |
| AGATAGACAGACCTGATGGA+AGG | - | chr7.4:28803728-28803747 | MS.gene52227:CDS | 45.0% | |
| ATACCCCTAAGACATTTGGC+TGG | - | chr7.4:28804613-28804632 | MS.gene52227:intron | 45.0% | |
| ATGGAGATAGACAGACCTGA+TGG | - | chr7.4:28803724-28803743 | MS.gene52227:CDS | 45.0% | |
| CATGCTGCGTTTATTGCACA+TGG | + | chr7.4:28804571-28804590 | None:intergenic | 45.0% | |
| CATTGTGGCATGTGTTCCTT+GGG | - | chr7.4:28804293-28804312 | MS.gene52227:intron | 45.0% | |
| CGGAATACCCCTAAGACATT+TGG | - | chr7.4:28804609-28804628 | MS.gene52227:intron | 45.0% | |
| CTACCAGCCAAATGTCTTAG+GGG | + | chr7.4:28804619-28804638 | None:intergenic | 45.0% | |
| GAAGCTAGCTAATTGGAGTC+TGG | - | chr7.4:28805404-28805423 | MS.gene52227:intron | 45.0% | |
| GACTGGATTCACTAGACAAC+GGG | + | chr7.4:28804859-28804878 | None:intergenic | 45.0% | |
| GATGCCTCACGAGTAGATTT+CGG | + | chr7.4:28806109-28806128 | None:intergenic | 45.0% | |
| GCAAGGAGAAACGAAAGTTC+TGG | - | chr7.4:28803825-28803844 | MS.gene52227:intron | 45.0% | |
| GCAGTTTATGGACCTAAAGC+CGG | - | chr7.4:28803850-28803869 | MS.gene52227:intron | 45.0% | |
| GGCTGGTAGTTGAAACTTGT+TGG | - | chr7.4:28804630-28804649 | MS.gene52227:intron | 45.0% | |
| GTGATGATTCCATGTGCCAT+GGG | + | chr7.4:28805778-28805797 | None:intergenic | 45.0% | |
| TACCTTCATTGCCTAGAACG+AGG | - | chr7.4:28806034-28806053 | MS.gene52227:CDS | 45.0% | |
| TCATTGTGGCATGTGTTCCT+TGG | - | chr7.4:28804292-28804311 | MS.gene52227:intron | 45.0% | |
| TGACCAACGTGTCCTGTATT+AGG | + | chr7.4:28803928-28803947 | None:intergenic | 45.0% | |
| TGTGATGATTCCATGTGCCA+TGG | + | chr7.4:28805779-28805798 | None:intergenic | 45.0% | |
| TTCTTCTTGGTTCCGGCTTT+AGG | + | chr7.4:28803865-28803884 | None:intergenic | 45.0% | |
| ! | CGAAGCATTTAGATACCCTG+TGG | - | chr7.4:28804918-28804937 | MS.gene52227:intron | 45.0% |
| !! | TATAAAATAATAATATCTTT+AGG | + | chr7.4:28804495-28804514 | None:intergenic | 5.0% |
| AAGGAAGTGAGAAACCTGCC+TGG | + | chr7.4:28804044-28804063 | None:intergenic | 50.0% | |
| ACACGTTGGTCAAGCGGATA+GGG | - | chr7.4:28803936-28803955 | MS.gene52227:intron | 50.0% | |
| AGGATACAGCACCATCGTCA+TGG | + | chr7.4:28804161-28804180 | None:intergenic | 50.0% | |
| ATGCAGGTTGTCCATGACGA+TGG | - | chr7.4:28804147-28804166 | MS.gene52227:CDS | 50.0% | |
| CCAGAGAAATCATCACAGGC+GGG | - | chr7.4:28805745-28805764 | MS.gene52227:intron | 50.0% | |
| CGTGCCAGAGAAATCATCAC+AGG | - | chr7.4:28805741-28805760 | MS.gene52227:intron | 50.0% | |
| GAAGGAGTCCCAATCAACTG+AGG | - | chr7.4:28803746-28803765 | MS.gene52227:CDS | 50.0% | |
| GCCAGAGAAATCATCACAGG+CGG | - | chr7.4:28805744-28805763 | MS.gene52227:intron | 50.0% | |
| GTTACACATGGCGCTATGTC+AGG | - | chr7.4:28805802-28805821 | MS.gene52227:CDS | 50.0% | |
| TACAGGACACGTTGGTCAAG+CGG | - | chr7.4:28803930-28803949 | MS.gene52227:intron | 50.0% | |
| TGATTGGGACTCCTTCCATC+AGG | + | chr7.4:28803742-28803761 | None:intergenic | 50.0% | |
| ! | ACAGAAGCATGCGGAACACT+TGG | + | chr7.4:28805887-28805906 | None:intergenic | 50.0% |
| ! | ACTCGTGAGGCATCTAAAGC+TGG | - | chr7.4:28806115-28806134 | MS.gene52227:CDS | 50.0% |
| ! | GTACAAGTATCGCAGACAGC+AGG | + | chr7.4:28805340-28805359 | None:intergenic | 50.0% |
| ! | GTCCTCGTTCTAGGCAATGA+AGG | + | chr7.4:28806039-28806058 | None:intergenic | 50.0% |
| AGCTAGCGGCCTCAGTTGAT+TGG | + | chr7.4:28803758-28803777 | None:intergenic | 55.0% | |
| CCCGCCTGTGATGATTTCTC+TGG | + | chr7.4:28805748-28805767 | None:intergenic | 55.0% | |
| GACACGTTGGTCAAGCGGAT+AGG | - | chr7.4:28803935-28803954 | MS.gene52227:intron | 55.0% | |
| GAGGACGAGCCACAACTCAA+AGG | - | chr7.4:28806053-28806072 | MS.gene52227:CDS | 55.0% | |
| GCTAGCGGCCTCAGTTGATT+GGG | + | chr7.4:28803757-28803776 | None:intergenic | 55.0% | |
| GGCAATGATCCCATGGCACA+TGG | - | chr7.4:28805766-28805785 | MS.gene52227:intron | 55.0% | |
| TTGTGGCTCGTCCTCGTTCT+AGG | + | chr7.4:28806048-28806067 | None:intergenic | 55.0% | |
| ! | AGCGCCGAAATCTACTCGTG+AGG | - | chr7.4:28806102-28806121 | MS.gene52227:CDS | 55.0% |
| ACAGGCGGGCAATGATCCCA+TGG | - | chr7.4:28805759-28805778 | MS.gene52227:intron | 60.0% | |
| AGCCCATGGCTCAGCCACAT+GGG | - | chr7.4:28803801-28803820 | MS.gene52227:CDS | 60.0% | |
| ATCGCAGACAGCAGGACCCT+GGG | + | chr7.4:28805332-28805351 | None:intergenic | 60.0% | |
| ATGTGGCTGAGCCATGGGCT+CGG | + | chr7.4:28803801-28803820 | None:intergenic | 60.0% | |
| CGTTTCTCCTTGCGCCCATG+TGG | + | chr7.4:28803818-28803837 | None:intergenic | 60.0% | |
| TATCGCAGACAGCAGGACCC+TGG | + | chr7.4:28805333-28805352 | None:intergenic | 60.0% | |
| TGCGCTGCACTTGTGGATGC+CGG | - | chr7.4:28804589-28804608 | MS.gene52227:intron | 60.0% | |
| CGCAGCATGCGCTGCACTTG+TGG | - | chr7.4:28804582-28804601 | MS.gene52227:intron | 65.0% | |
| CGCCCATGTGGCTGAGCCAT+GGG | + | chr7.4:28803806-28803825 | None:intergenic | 65.0% | |
| GAGCCCATGGCTCAGCCACA+TGG | - | chr7.4:28803800-28803819 | MS.gene52227:CDS | 65.0% | |
| TCTGTCCTCCACCGAGCCCA+TGG | - | chr7.4:28803787-28803806 | MS.gene52227:CDS | 65.0% | |
| GCGCCCATGTGGCTGAGCCA+TGG | + | chr7.4:28803807-28803826 | None:intergenic | 70.0% | |
| GGCTCAGCCACATGGGCGCA+AGG | - | chr7.4:28803808-28803827 | MS.gene52227:CDS | 70.0% | |
| TGGCTGAGCCATGGGCTCGG+TGG | + | chr7.4:28803798-28803817 | None:intergenic | 70.0% | |
| !! | CTGAGCCATGGGCTCGGTGG+AGG | + | chr7.4:28803795-28803814 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 28803724 | 28806141 | 28803724 | ID=MS.gene52227 |
| chr7.4 | mRNA | 28803724 | 28806141 | 28803724 | ID=MS.gene52227.t1;Parent=MS.gene52227 |
| chr7.4 | exon | 28805800 | 28806141 | 28805800 | ID=MS.gene52227.t1.exon1;Parent=MS.gene52227.t1 |
| chr7.4 | CDS | 28805800 | 28806141 | 28805800 | ID=cds.MS.gene52227.t1;Parent=MS.gene52227.t1 |
| chr7.4 | exon | 28805692 | 28805712 | 28805692 | ID=MS.gene52227.t1.exon2;Parent=MS.gene52227.t1 |
| chr7.4 | CDS | 28805692 | 28805712 | 28805692 | ID=cds.MS.gene52227.t1;Parent=MS.gene52227.t1 |
| chr7.4 | exon | 28805231 | 28805303 | 28805231 | ID=MS.gene52227.t1.exon3;Parent=MS.gene52227.t1 |
| chr7.4 | CDS | 28805231 | 28805303 | 28805231 | ID=cds.MS.gene52227.t1;Parent=MS.gene52227.t1 |
| chr7.4 | exon | 28805076 | 28805143 | 28805076 | ID=MS.gene52227.t1.exon4;Parent=MS.gene52227.t1 |
| chr7.4 | CDS | 28805076 | 28805143 | 28805076 | ID=cds.MS.gene52227.t1;Parent=MS.gene52227.t1 |
| chr7.4 | exon | 28804042 | 28804174 | 28804042 | ID=MS.gene52227.t1.exon5;Parent=MS.gene52227.t1 |
| chr7.4 | CDS | 28804042 | 28804174 | 28804042 | ID=cds.MS.gene52227.t1;Parent=MS.gene52227.t1 |
| chr7.4 | exon | 28803724 | 28803839 | 28803724 | ID=MS.gene52227.t1.exon6;Parent=MS.gene52227.t1 |
| chr7.4 | CDS | 28803724 | 28803839 | 28803724 | ID=cds.MS.gene52227.t1;Parent=MS.gene52227.t1 |
| Gene Sequence |
| Protein sequence |
