Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52420.t1 | XP_013463257.1 | 90.8 | 196 | 16 | 1 | 1 | 194 | 1 | 196 | 5.00E-92 | 347.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52420.t1 | O23429 | 82.7 | 197 | 31 | 2 | 1 | 194 | 1 | 197 | 2.4e-87 | 323.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52420.t1 | B7FI15 | 90.8 | 196 | 16 | 1 | 1 | 194 | 1 | 196 | 3.6e-92 | 347.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene52420 | 0.833843 | 4.23E-56 | -1.69E-46 |
| MS.gene049350 | MS.gene52420 | 0.811265 | 7.63E-51 | -1.69E-46 |
| MS.gene049807 | MS.gene52420 | 0.811417 | 7.07E-51 | -1.69E-46 |
| MS.gene050253 | MS.gene52420 | 0.807967 | 3.90E-50 | -1.69E-46 |
| MS.gene051676 | MS.gene52420 | 0.827388 | 1.61E-54 | -1.69E-46 |
| MS.gene051700 | MS.gene52420 | 0.809187 | 2.14E-50 | -1.69E-46 |
| MS.gene052072 | MS.gene52420 | 0.802492 | 5.47E-49 | -1.69E-46 |
| MS.gene052463 | MS.gene52420 | 0.805913 | 1.06E-49 | -1.69E-46 |
| MS.gene053045 | MS.gene52420 | 0.80858 | 2.89E-50 | -1.69E-46 |
| MS.gene054139 | MS.gene52420 | 0.804674 | 1.93E-49 | -1.69E-46 |
| MS.gene055313 | MS.gene52420 | 0.81267 | 3.77E-51 | -1.69E-46 |
| MS.gene055468 | MS.gene52420 | 0.805733 | 1.16E-49 | -1.69E-46 |
| MS.gene055469 | MS.gene52420 | 0.829969 | 3.82E-55 | -1.69E-46 |
| MS.gene055513 | MS.gene52420 | 0.812047 | 5.16E-51 | -1.69E-46 |
| MS.gene056308 | MS.gene52420 | 0.802088 | 6.62E-49 | -1.69E-46 |
| MS.gene056522 | MS.gene52420 | -0.818536 | 1.86E-52 | -1.69E-46 |
| MS.gene057102 | MS.gene52420 | 0.823162 | 1.61E-53 | -1.69E-46 |
| MS.gene058639 | MS.gene52420 | 0.804187 | 2.44E-49 | -1.69E-46 |
| MS.gene058852 | MS.gene52420 | 0.827382 | 1.61E-54 | -1.69E-46 |
| MS.gene059171 | MS.gene52420 | 0.839628 | 1.41E-57 | -1.69E-46 |
| MS.gene059227 | MS.gene52420 | 0.817613 | 3.01E-52 | -1.69E-46 |
| MS.gene061100 | MS.gene52420 | 0.806971 | 6.35E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52420.t1 | MTR_2g436870 | 90.816 | 196 | 16 | 1 | 1 | 194 | 1 | 196 | 1.03e-130 | 367 |
| MS.gene52420.t1 | MTR_4g022570 | 67.179 | 195 | 62 | 1 | 1 | 193 | 1 | 195 | 3.25e-97 | 283 |
| MS.gene52420.t1 | MTR_1g047720 | 63.776 | 196 | 69 | 1 | 1 | 194 | 1 | 196 | 5.94e-95 | 277 |
| MS.gene52420.t1 | MTR_7g058900 | 64.615 | 195 | 67 | 1 | 1 | 193 | 1 | 195 | 1.14e-92 | 271 |
| MS.gene52420.t1 | MTR_4g083490 | 60.825 | 194 | 74 | 1 | 2 | 193 | 4 | 197 | 3.34e-89 | 263 |
| MS.gene52420.t1 | MTR_2g028790 | 59.278 | 194 | 77 | 1 | 2 | 193 | 6 | 199 | 3.34e-86 | 255 |
| MS.gene52420.t1 | MTR_7g058640 | 57.949 | 195 | 80 | 1 | 1 | 193 | 1 | 195 | 8.07e-82 | 243 |
| MS.gene52420.t1 | MTR_7g058640 | 61.628 | 172 | 64 | 1 | 1 | 170 | 1 | 172 | 3.58e-76 | 228 |
| MS.gene52420.t1 | MTR_1g111890 | 47.907 | 215 | 91 | 2 | 1 | 194 | 1 | 215 | 1.52e-69 | 213 |
| MS.gene52420.t1 | MTR_1g047710 | 59.091 | 132 | 54 | 0 | 55 | 186 | 5 | 136 | 1.40e-54 | 172 |
| MS.gene52420.t1 | MTR_4g022470 | 69.091 | 110 | 34 | 0 | 60 | 169 | 8 | 117 | 7.99e-51 | 161 |
| MS.gene52420.t1 | MTR_7g058640 | 56.410 | 117 | 51 | 0 | 77 | 193 | 1 | 117 | 1.27e-43 | 144 |
| MS.gene52420.t1 | MTR_5g089370 | 36.066 | 183 | 112 | 4 | 7 | 186 | 4 | 184 | 1.16e-33 | 120 |
| MS.gene52420.t1 | MTR_4g052550 | 32.796 | 186 | 120 | 4 | 5 | 187 | 2 | 185 | 9.78e-33 | 118 |
| MS.gene52420.t1 | MTR_4g115390 | 27.442 | 215 | 147 | 4 | 7 | 214 | 4 | 216 | 1.81e-24 | 97.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52420.t1 | AT4G15780 | 87.709 | 179 | 19 | 2 | 1 | 176 | 1 | 179 | 1.79e-115 | 328 |
| MS.gene52420.t1 | AT2G33120 | 65.641 | 195 | 65 | 1 | 1 | 193 | 1 | 195 | 5.36e-94 | 275 |
| MS.gene52420.t1 | AT2G32670 | 65.641 | 195 | 65 | 1 | 1 | 193 | 66 | 260 | 7.38e-94 | 276 |
| MS.gene52420.t1 | AT1G04760 | 65.306 | 196 | 66 | 1 | 1 | 194 | 1 | 196 | 1.03e-93 | 274 |
| MS.gene52420.t1 | AT1G04760 | 65.306 | 196 | 66 | 1 | 1 | 194 | 1 | 196 | 1.03e-93 | 274 |
| MS.gene52420.t1 | AT1G04750 | 65.128 | 195 | 66 | 1 | 1 | 193 | 1 | 195 | 1.74e-93 | 273 |
| MS.gene52420.t1 | AT2G33120 | 63.054 | 203 | 65 | 1 | 1 | 193 | 1 | 203 | 1.25e-92 | 271 |
| MS.gene52420.t1 | AT3G54300 | 49.767 | 215 | 87 | 3 | 1 | 194 | 1 | 215 | 3.44e-71 | 218 |
| MS.gene52420.t1 | AT3G54300 | 49.767 | 215 | 87 | 3 | 1 | 194 | 1 | 215 | 3.44e-71 | 218 |
| MS.gene52420.t1 | AT3G54300 | 49.767 | 215 | 87 | 3 | 1 | 194 | 1 | 215 | 3.44e-71 | 218 |
| MS.gene52420.t1 | AT2G33110 | 57.377 | 183 | 72 | 2 | 1 | 181 | 1 | 179 | 1.14e-68 | 210 |
| MS.gene52420.t1 | AT2G33110 | 63.462 | 156 | 55 | 1 | 1 | 154 | 1 | 156 | 3.23e-68 | 208 |
| MS.gene52420.t1 | AT1G04750 | 61.538 | 117 | 45 | 0 | 77 | 193 | 1 | 117 | 3.95e-48 | 155 |
| MS.gene52420.t1 | AT1G04750 | 61.538 | 117 | 45 | 0 | 77 | 193 | 1 | 117 | 3.95e-48 | 155 |
| MS.gene52420.t1 | AT1G04750 | 61.538 | 117 | 45 | 0 | 77 | 193 | 1 | 117 | 3.95e-48 | 155 |
| MS.gene52420.t1 | AT4G32150 | 33.514 | 185 | 118 | 4 | 5 | 186 | 2 | 184 | 7.73e-33 | 119 |
| MS.gene52420.t1 | AT5G11150 | 31.250 | 224 | 145 | 5 | 5 | 224 | 2 | 220 | 1.87e-32 | 117 |
| MS.gene52420.t1 | AT5G11150 | 31.250 | 224 | 145 | 5 | 5 | 224 | 2 | 220 | 2.95e-32 | 117 |
| MS.gene52420.t1 | AT5G22360 | 32.620 | 187 | 120 | 4 | 5 | 187 | 2 | 186 | 8.69e-32 | 116 |
| MS.gene52420.t1 | AT2G25340 | 31.892 | 185 | 121 | 4 | 5 | 186 | 2 | 184 | 2.29e-28 | 107 |
| MS.gene52420.t1 | AT2G33120 | 56.452 | 62 | 27 | 0 | 132 | 193 | 52 | 113 | 1.93e-18 | 79.0 |
Find 33 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGTCTGAACAAGGAATT+TGG | 0.190475 | 2.3:-54513022 | MS.gene52420:CDS |
| AAATTCCTTGTTCAGACTTT+TGG | 0.253010 | 2.3:+54513024 | None:intergenic |
| CTGTTCAAATTAGCAATAAT+TGG | 0.262585 | 2.3:-54511673 | MS.gene52420:CDS |
| CTGCTTGCTAACAGATTCTT+TGG | 0.273100 | 2.3:+54513126 | None:intergenic |
| TAATTGGAAGTTTACTAATC+AGG | 0.336015 | 2.3:-54511657 | MS.gene52420:intron |
| ACTGTAGGTGAACTTGTTAT+TGG | 0.347549 | 2.3:+54514809 | None:intergenic |
| TTCATGTGCTCTTTCATAAT+CGG | 0.353938 | 2.3:+54512905 | None:intergenic |
| GCCGACTTTAAGAAAAGATA+TGG | 0.410544 | 2.3:-54513073 | MS.gene52420:CDS |
| GTTATCTGGCTCTCTATTTG+TGG | 0.422650 | 2.3:-54511705 | MS.gene52420:CDS |
| AAAGTCTGAACAAGGAATTT+GGG | 0.465281 | 2.3:-54513021 | MS.gene52420:intron |
| GTGAACTTGTTATTGGAAGA+AGG | 0.469932 | 2.3:+54514816 | None:intergenic |
| GAAGATGGTGAAAATATGAT+TGG | 0.472754 | 2.3:-54511523 | MS.gene52420:CDS |
| AGTCGGCTTTGACACGTTCA+AGG | 0.477338 | 2.3:+54513089 | None:intergenic |
| ATCTGGCTCTCTATTTGTGG+TGG | 0.488664 | 2.3:-54511702 | MS.gene52420:CDS |
| AGACACTGAGCTGCAATGGC+AGG | 0.504015 | 2.3:+54514849 | None:intergenic |
| CTGAAGACACTGAGCTGCAA+TGG | 0.506758 | 2.3:+54514845 | None:intergenic |
| ATCTTCGACAAGAAAATTGA+AGG | 0.507938 | 2.3:+54514773 | None:intergenic |
| AAGTTATCGCATGGTGAAGA+TGG | 0.512626 | 2.3:-54511538 | MS.gene52420:CDS |
| ATATACAGCTTTGTAGCTCG+TGG | 0.541984 | 2.3:-54514915 | MS.gene52420:CDS |
| GCTGAGTACACCGAGTTCAC+TGG | 0.552986 | 2.3:-54514879 | MS.gene52420:CDS |
| TGAAAAGCTATTAAAAGTGA+AGG | 0.564756 | 2.3:-54512855 | MS.gene52420:CDS |
| CAAGAAAATTGAAGGTGTGA+TGG | 0.566358 | 2.3:+54514781 | None:intergenic |
| GACACGTTCAAGGAAAGCAA+TGG | 0.576248 | 2.3:+54513099 | None:intergenic |
| GCTCAAGATTTCAGAAAGCA+AGG | 0.582915 | 2.3:-54511810 | MS.gene52420:CDS |
| AGGAAAGTTACCAGTGAACT+CGG | 0.587842 | 2.3:+54514869 | None:intergenic |
| TTTAAGAAAAGATATGGTGG+TGG | 0.589931 | 2.3:-54513067 | MS.gene52420:CDS |
| TTTCAGAAAGCAAGGAACAC+AGG | 0.591739 | 2.3:-54511802 | MS.gene52420:intron |
| TCACTTCATAAGTTATCGCA+TGG | 0.616321 | 2.3:-54511547 | MS.gene52420:CDS |
| TATTGCCAAAAGTCTGAACA+AGG | 0.635316 | 2.3:-54513029 | MS.gene52420:CDS |
| CTTTGTAGCTCGTGGAACGA+TGG | 0.636038 | 2.3:-54514907 | MS.gene52420:CDS |
| CATGTTAGAAAATATAGACA+AGG | 0.648118 | 2.3:-54512807 | MS.gene52420:intron |
| GGTGTGATGGTCACAACTGT+AGG | 0.651595 | 2.3:+54514794 | None:intergenic |
| GACTTTAAGAAAAGATATGG+TGG | 0.664798 | 2.3:-54513070 | MS.gene52420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTTATATTAATTTT+GGG | - | chr2.3:54512239-54512258 | MS.gene52420:intron | 0.0% |
| !!! | TTATTTTTTTATATTAATTT+TGG | - | chr2.3:54512238-54512257 | MS.gene52420:intron | 0.0% |
| !! | AAAAATAATTCTTAGAATTT+CGG | + | chr2.3:54512226-54512245 | None:intergenic | 10.0% |
| !! | GTATAAAAAGTTTAATAATA+TGG | - | chr2.3:54513476-54513495 | MS.gene52420:intron | 10.0% |
| !! | ATAAAAGCTTATTATTAGTA+AGG | - | chr2.3:54512897-54512916 | MS.gene52420:CDS | 15.0% |
| !! | CAAATATAGACAATAATTAA+TGG | + | chr2.3:54512654-54512673 | None:intergenic | 15.0% |
| !! | CATTAATTATTGTCTATATT+TGG | - | chr2.3:54512652-54512671 | MS.gene52420:intron | 15.0% |
| !! | CTTAAATAGAACTTAAAATA+AGG | + | chr2.3:54514379-54514398 | None:intergenic | 15.0% |
| !! | GATAAATAATAGTTTATACA+CGG | + | chr2.3:54514350-54514369 | None:intergenic | 15.0% |
| !!! | ATTTTAGAAAAAGATAAACT+TGG | - | chr2.3:54512715-54512734 | MS.gene52420:intron | 15.0% |
| !!! | TTTTAGAAAAAGATAAACTT+GGG | - | chr2.3:54512716-54512735 | MS.gene52420:intron | 15.0% |
| !! | AAAATTAAATTGGTTGTTCT+TGG | - | chr2.3:54514669-54514688 | MS.gene52420:intron | 20.0% |
| !! | ATTATTGTCTATATTTGGAT+TGG | - | chr2.3:54512657-54512676 | MS.gene52420:intron | 20.0% |
| !! | ATTCAAAAACCGTATTAAAA+TGG | + | chr2.3:54512304-54512323 | None:intergenic | 20.0% |
| !! | CCAGTAATTATTTGAAAAAA+TGG | - | chr2.3:54514039-54514058 | MS.gene52420:intron | 20.0% |
| !! | TCAGAACATGAAAATTAAAT+TGG | - | chr2.3:54514659-54514678 | MS.gene52420:intron | 20.0% |
| !! | TGTAATTAAAGAACATTGAA+AGG | - | chr2.3:54512603-54512622 | MS.gene52420:intron | 20.0% |
| !! | TTTATTGAGTTCTCTAATTA+AGG | - | chr2.3:54511933-54511952 | MS.gene52420:CDS | 20.0% |
| !!! | AAAAAGATTCTGTAATTTTC+AGG | - | chr2.3:54514587-54514606 | MS.gene52420:intron | 20.0% |
| !!! | AAAATGGATTGTAAATTAGT+AGG | + | chr2.3:54513722-54513741 | None:intergenic | 20.0% |
| !!! | AAATGGATTGTAAATTAGTA+GGG | + | chr2.3:54513721-54513740 | None:intergenic | 20.0% |
| !!! | AAGTATTTGTTTTTGGTTTT+TGG | - | chr2.3:54512390-54512409 | MS.gene52420:intron | 20.0% |
| !!! | ATAAGCTTTTATATGTTTGT+AGG | + | chr2.3:54512889-54512908 | None:intergenic | 20.0% |
| !!! | ATTAAGGTAAATGATTTTTG+TGG | - | chr2.3:54511967-54511986 | MS.gene52420:intron | 20.0% |
| !!! | ATTTTAAGTTCTATTTAAGC+TGG | - | chr2.3:54514380-54514399 | MS.gene52420:intron | 20.0% |
| !!! | ATTTTAATACGGTTTTTGAA+TGG | - | chr2.3:54512303-54512322 | MS.gene52420:intron | 20.0% |
| !!! | CCATTTTTTCAAATAATTAC+TGG | + | chr2.3:54514042-54514061 | None:intergenic | 20.0% |
| !!! | CTTTAATCATTTATGTTTTC+AGG | - | chr2.3:54514448-54514467 | MS.gene52420:intron | 20.0% |
| !!! | TTTATATTAATTTTGGGGAA+GGG | - | chr2.3:54512245-54512264 | MS.gene52420:intron | 20.0% |
| !!! | TTTTATATTAATTTTGGGGA+AGG | - | chr2.3:54512244-54512263 | MS.gene52420:intron | 20.0% |
| !!! | TTTTGGTGAATTTTATTGTA+TGG | - | chr2.3:54512407-54512426 | MS.gene52420:intron | 20.0% |
| ! | AAATGTTAAGAACAATGTGA+AGG | - | chr2.3:54513908-54513927 | MS.gene52420:intron | 25.0% |
| ! | AGAACTTAAAATAAGGCAAT+GGG | + | chr2.3:54514372-54514391 | None:intergenic | 25.0% |
| ! | ATTGTTCAAAGTTCAAACAA+GGG | - | chr2.3:54512446-54512465 | MS.gene52420:intron | 25.0% |
| ! | CATGTTAGAAAATATAGACA+AGG | - | chr2.3:54513612-54513631 | MS.gene52420:intron | 25.0% |
| ! | CTGTTCAAATTAGCAATAAT+TGG | - | chr2.3:54514746-54514765 | MS.gene52420:intron | 25.0% |
| ! | TAATCACAACTCAAAAACTA+CGG | + | chr2.3:54512497-54512516 | None:intergenic | 25.0% |
| ! | TAATTGGAAGTTTACTAATC+AGG | - | chr2.3:54514762-54514781 | MS.gene52420:intron | 25.0% |
| ! | TAGAACTTAAAATAAGGCAA+TGG | + | chr2.3:54514373-54514392 | None:intergenic | 25.0% |
| ! | TGAAAAGCTATTAAAAGTGA+AGG | - | chr2.3:54513564-54513583 | MS.gene52420:intron | 25.0% |
| ! | TGTCATTAGATGATTAAATC+CGG | - | chr2.3:54512007-54512026 | MS.gene52420:intron | 25.0% |
| !! | AAAGAACATTGAAAGGATTT+TGG | - | chr2.3:54512610-54512629 | MS.gene52420:intron | 25.0% |
| !! | AATCTGAATTGTGTGTTTTT+AGG | - | chr2.3:54511768-54511787 | MS.gene52420:intron | 25.0% |
| !! | ACATGAAATCATATTTTACC+AGG | - | chr2.3:54514841-54514860 | MS.gene52420:CDS | 25.0% |
| !! | ACCATATCTTTTCTTAAAGT+CGG | + | chr2.3:54513350-54513369 | None:intergenic | 25.0% |
| !! | TGTGGAATGTTGTTATATTT+TGG | - | chr2.3:54511862-54511881 | MS.gene52420:intron | 25.0% |
| !!! | ATCTTTTTCTAAAATCACAG+TGG | + | chr2.3:54512710-54512729 | None:intergenic | 25.0% |
| !!! | CACTAATGACCATTTTAATA+CGG | - | chr2.3:54512292-54512311 | MS.gene52420:intron | 25.0% |
| !!! | GCTTAAAGTTTTGATCTTTT+TGG | - | chr2.3:54511811-54511830 | MS.gene52420:CDS | 25.0% |
| !!! | TAAAGTTTGTTGACATCTTA+AGG | - | chr2.3:54513437-54513456 | MS.gene52420:intron | 25.0% |
| !!! | TAAGGTTTGTTAGTCAATTA+AGG | - | chr2.3:54511951-54511970 | MS.gene52420:CDS | 25.0% |
| !!! | TAGTTTTTGAGTTGTGATTA+GGG | - | chr2.3:54512497-54512516 | MS.gene52420:intron | 25.0% |
| !!! | TTTTAGAGAAAACGTGAAAA+TGG | + | chr2.3:54513738-54513757 | None:intergenic | 25.0% |
| !!! | TTTTGGTGATTGAAGTAAAT+AGG | - | chr2.3:54511879-54511898 | MS.gene52420:intron | 25.0% |
| AAAAACAAATACTTCTAGCC+TGG | + | chr2.3:54512384-54512403 | None:intergenic | 30.0% | |
| AAAAGTCTGAACAAGGAATT+TGG | - | chr2.3:54513397-54513416 | MS.gene52420:intron | 30.0% | |
| AAAGTCTGAACAAGGAATTT+GGG | - | chr2.3:54513398-54513417 | MS.gene52420:intron | 30.0% | |
| AGTTATATTTAGTGAGAGCA+TGG | + | chr2.3:54513118-54513137 | None:intergenic | 30.0% | |
| ATAATTCTTAGAATTTCGGC+TGG | + | chr2.3:54512222-54512241 | None:intergenic | 30.0% | |
| ATCTTCGACAAGAAAATTGA+AGG | + | chr2.3:54511649-54511668 | None:intergenic | 30.0% | |
| CATTGTTCAAAGTTCAAACA+AGG | - | chr2.3:54512445-54512464 | MS.gene52420:intron | 30.0% | |
| CCTAACTCAACTTATAAAAC+CGG | + | chr2.3:54512198-54512217 | None:intergenic | 30.0% | |
| GAAGATGGTGAAAATATGAT+TGG | - | chr2.3:54514896-54514915 | MS.gene52420:CDS | 30.0% | |
| TAATTCTTAGAATTTCGGCT+GGG | + | chr2.3:54512221-54512240 | None:intergenic | 30.0% | |
| TATGAAGTGATATTATGACC+TGG | + | chr2.3:54514862-54514881 | None:intergenic | 30.0% | |
| TTCATGTGCTCTTTCATAAT+CGG | + | chr2.3:54513517-54513536 | None:intergenic | 30.0% | |
| TTCTACCACAGTTATCATTA+TGG | - | chr2.3:54513689-54513708 | MS.gene52420:intron | 30.0% | |
| TTTAAGAAAAGATATGGTGG+TGG | - | chr2.3:54513352-54513371 | MS.gene52420:intron | 30.0% | |
| ! | AAATTCCTTGTTCAGACTTT+TGG | + | chr2.3:54513398-54513417 | None:intergenic | 30.0% |
| ! | AGTTACTCAAAGTTTCAAGT+GGG | + | chr2.3:54514269-54514288 | None:intergenic | 30.0% |
| ! | GACTTTAAGAAAAGATATGG+TGG | - | chr2.3:54513349-54513368 | MS.gene52420:intron | 30.0% |
| ! | TGTTTATTTCCGAAACCTTT+TGG | + | chr2.3:54512866-54512885 | None:intergenic | 30.0% |
| ! | TTCAATTTTCTTGTCGAAGA+TGG | - | chr2.3:54511648-54511667 | MS.gene52420:intron | 30.0% |
| !! | ACGTTTTCTCTAAAAATGTG+GGG | - | chr2.3:54513743-54513762 | MS.gene52420:intron | 30.0% |
| !! | CACGTTTTCTCTAAAAATGT+GGG | - | chr2.3:54513742-54513761 | MS.gene52420:intron | 30.0% |
| !! | TCACGTTTTCTCTAAAAATG+TGG | - | chr2.3:54513741-54513760 | MS.gene52420:intron | 30.0% |
| !! | TCCATTTTTCCAAAAGGTTT+CGG | - | chr2.3:54512854-54512873 | MS.gene52420:CDS | 30.0% |
| !!! | AATTGTGTGTTTTTAGGTGA+TGG | - | chr2.3:54511774-54511793 | MS.gene52420:intron | 30.0% |
| !!! | AGACAAGGTACTGTTTTTTT+AGG | - | chr2.3:54513627-54513646 | MS.gene52420:intron | 30.0% |
| !!! | AGGCTAGAAGTATTTGTTTT+TGG | - | chr2.3:54512383-54512402 | MS.gene52420:intron | 30.0% |
| !!! | GGTTTTTGAGTTGATTTTAG+TGG | - | chr2.3:54511832-54511851 | MS.gene52420:intron | 30.0% |
| !!! | GTAGTTTTTGAGTTGTGATT+AGG | - | chr2.3:54512496-54512515 | MS.gene52420:intron | 30.0% |
| !!! | TCTTGGAATTCTGTTGTTTT+TGG | - | chr2.3:54514686-54514705 | MS.gene52420:intron | 30.0% |
| !!! | TGTTTTTGGTTCTAGTTATC+TGG | - | chr2.3:54514700-54514719 | MS.gene52420:intron | 30.0% |
| !!! | TTTGAGTTGATTTTAGTGGT+GGG | - | chr2.3:54511836-54511855 | MS.gene52420:intron | 30.0% |
| !!! | TTTTGAGTTGATTTTAGTGG+TGG | - | chr2.3:54511835-54511854 | MS.gene52420:intron | 30.0% |
| AAAACAGTGTTGTCTAACCT+TGG | + | chr2.3:54514545-54514564 | None:intergenic | 35.0% | |
| AACAATGTGAAGGACATGAT+TGG | - | chr2.3:54513918-54513937 | MS.gene52420:intron | 35.0% | |
| AACATTGCAATATGTAGCAC+TGG | + | chr2.3:54514155-54514174 | None:intergenic | 35.0% | |
| AAGTTGACTATGTGCATGTT+TGG | + | chr2.3:54512794-54512813 | None:intergenic | 35.0% | |
| ACATACACAAAGACAATGCA+AGG | + | chr2.3:54514311-54514330 | None:intergenic | 35.0% | |
| AGACAATGCAAGGAATTCAT+AGG | + | chr2.3:54514301-54514320 | None:intergenic | 35.0% | |
| AGGATCCATAATGATAACTG+TGG | + | chr2.3:54513697-54513716 | None:intergenic | 35.0% | |
| CAGTTACTCAAAGTTTCAAG+TGG | + | chr2.3:54514270-54514289 | None:intergenic | 35.0% | |
| GATTTGAACTCAATACCTTG+AGG | - | chr2.3:54512325-54512344 | MS.gene52420:intron | 35.0% | |
| GCTTCGTAGGTCATAAATAA+CGG | + | chr2.3:54513994-54514013 | None:intergenic | 35.0% | |
| TATTGCCAAAAGTCTGAACA+AGG | - | chr2.3:54513390-54513409 | MS.gene52420:intron | 35.0% | |
| TCACTTCATAAGTTATCGCA+TGG | - | chr2.3:54514872-54514891 | MS.gene52420:CDS | 35.0% | |
| TGTTATTAGCTGCCTAATTG+CGG | - | chr2.3:54512037-54512056 | MS.gene52420:intron | 35.0% | |
| TTTCTTGTCGAAGATGGTTA+TGG | - | chr2.3:54511654-54511673 | MS.gene52420:intron | 35.0% | |
| ! | ATATTTAGTGAGAGCATGGA+AGG | + | chr2.3:54513114-54513133 | None:intergenic | 35.0% |
| ! | CAAGAAAATTGAAGGTGTGA+TGG | + | chr2.3:54511641-54511660 | None:intergenic | 35.0% |
| ! | GCCGACTTTAAGAAAAGATA+TGG | - | chr2.3:54513346-54513365 | MS.gene52420:intron | 35.0% |
| ! | TGTTTTCTTCGTTGTTTGCT+TGG | - | chr2.3:54513179-54513198 | MS.gene52420:intron | 35.0% |
| !! | ACTGTAGGTGAACTTGTTAT+TGG | + | chr2.3:54511613-54511632 | None:intergenic | 35.0% |
| !! | ACTTATAAAACCGGCTTGTA+AGG | + | chr2.3:54512189-54512208 | None:intergenic | 35.0% |
| !! | CCGGTTTTATAAGTTGAGTT+AGG | - | chr2.3:54512195-54512214 | MS.gene52420:intron | 35.0% |
| !! | GTGAACTTGTTATTGGAAGA+AGG | + | chr2.3:54511606-54511625 | None:intergenic | 35.0% |
| !! | TACAGCTCCATTTTTCCAAA+AGG | - | chr2.3:54512848-54512867 | MS.gene52420:CDS | 35.0% |
| !! | TCCGAAACCTTTTGGAAAAA+TGG | + | chr2.3:54512858-54512877 | None:intergenic | 35.0% |
| !! | TGTTTTCAGGCTATTGATAG+AGG | - | chr2.3:54514461-54514480 | MS.gene52420:intron | 35.0% |
| AAGGGTTAATCTTGTGTCTG+TGG | - | chr2.3:54512464-54512483 | MS.gene52420:intron | 40.0% | |
| AAGTTATCGCATGGTGAAGA+TGG | - | chr2.3:54514881-54514900 | MS.gene52420:CDS | 40.0% | |
| ACTACACAGACCATATCTCT+AGG | + | chr2.3:54512141-54512160 | None:intergenic | 40.0% | |
| AGGAAAGTTACCAGTGAACT+CGG | + | chr2.3:54511553-54511572 | None:intergenic | 40.0% | |
| CAGCTAATAACACTTGTAGC+CGG | + | chr2.3:54512029-54512048 | None:intergenic | 40.0% | |
| CTGTGGTAGAAAATGATGTC+AGG | + | chr2.3:54513680-54513699 | None:intergenic | 40.0% | |
| GAGCTGTAGAAGTAGAAAGT+TGG | + | chr2.3:54512836-54512855 | None:intergenic | 40.0% | |
| GCTCAAGATTTCAGAAAGCA+AGG | - | chr2.3:54514609-54514628 | MS.gene52420:intron | 40.0% | |
| GGATTGTAAATTAGTAGGGC+AGG | + | chr2.3:54513717-54513736 | None:intergenic | 40.0% | |
| GGATTTGATTCTGATAGGAC+TGG | - | chr2.3:54513774-54513793 | MS.gene52420:intron | 40.0% | |
| TCTCACATTGCCTAGAGATA+TGG | - | chr2.3:54512128-54512147 | MS.gene52420:intron | 40.0% | |
| TGAACTCAATACCTTGAGGT+AGG | - | chr2.3:54512329-54512348 | MS.gene52420:intron | 40.0% | |
| TGACTTTGTAACCTACCTCA+AGG | + | chr2.3:54512343-54512362 | None:intergenic | 40.0% | |
| TGATTAGGGTGCAATAGAGA+TGG | - | chr2.3:54512511-54512530 | MS.gene52420:intron | 40.0% | |
| TGCCCTGATACTCTCTATAA+AGG | + | chr2.3:54513045-54513064 | None:intergenic | 40.0% | |
| TGGGAGCTTCAACAAAATCA+CGG | - | chr2.3:54512735-54512754 | MS.gene52420:intron | 40.0% | |
| TTCATTGTGTTGAGTGCGAA+GGG | - | chr2.3:54512094-54512113 | MS.gene52420:intron | 40.0% | |
| TTGTGTTTGTGTGTGTTGCA+TGG | - | chr2.3:54511703-54511722 | MS.gene52420:CDS | 40.0% | |
| TTTATACACGGTCTTCGCTT+TGG | + | chr2.3:54514338-54514357 | None:intergenic | 40.0% | |
| TTTCAGAAAGCAAGGAACAC+AGG | - | chr2.3:54514617-54514636 | MS.gene52420:intron | 40.0% | |
| ! | ACAGCAGTGATTAGCTGATT+AGG | + | chr2.3:54514226-54514245 | None:intergenic | 40.0% |
| ! | ACTCAACACAATGAAGGTGT+TGG | + | chr2.3:54512089-54512108 | None:intergenic | 40.0% |
| ! | ACTCTCTATAAAGGCGTATC+TGG | + | chr2.3:54513036-54513055 | None:intergenic | 40.0% |
| ! | ATATACAGCTTTGTAGCTCG+TGG | - | chr2.3:54511504-54511523 | MS.gene52420:CDS | 40.0% |
| ! | CTGCTTGCTAACAGATTCTT+TGG | + | chr2.3:54513296-54513315 | None:intergenic | 40.0% |
| ! | GGAGTGGATTTGATTCTGAT+AGG | - | chr2.3:54513769-54513788 | MS.gene52420:intron | 40.0% |
| ! | TTCTCTAAAAATGTGGGGAG+TGG | - | chr2.3:54513748-54513767 | MS.gene52420:intron | 40.0% |
| !! | AAAACCGGCTTGTAAGGTAA+GGG | + | chr2.3:54512183-54512202 | None:intergenic | 40.0% |
| !! | ACGCCTTTATAGAGAGTATC+AGG | - | chr2.3:54513039-54513058 | MS.gene52420:CDS | 40.0% |
| !! | ATGATAGTGTGAGCTTTTCC+TGG | + | chr2.3:54513850-54513869 | None:intergenic | 40.0% |
| !! | ATTTGGATTGGCAGTGAGTT+TGG | - | chr2.3:54512669-54512688 | MS.gene52420:intron | 40.0% |
| !! | CAGTGAGTTTGGTGTAATCA+CGG | - | chr2.3:54512680-54512699 | MS.gene52420:intron | 40.0% |
| !! | CGCCTTTATAGAGAGTATCA+GGG | - | chr2.3:54513040-54513059 | MS.gene52420:CDS | 40.0% |
| !! | GTTATCTGGCTCTCTATTTG+TGG | - | chr2.3:54514714-54514733 | MS.gene52420:intron | 40.0% |
| !! | TAAAACCGGCTTGTAAGGTA+AGG | + | chr2.3:54512184-54512203 | None:intergenic | 40.0% |
| !!! | GATTTTAGTGGTGGGTTTTG+TGG | - | chr2.3:54511844-54511863 | MS.gene52420:intron | 40.0% |
| CTTCATTGTGTTGAGTGCGA+AGG | - | chr2.3:54512093-54512112 | MS.gene52420:intron | 45.0% | |
| CTTCGCACTCAACACAATGA+AGG | + | chr2.3:54512095-54512114 | None:intergenic | 45.0% | |
| GACACGTTCAAGGAAAGCAA+TGG | + | chr2.3:54513323-54513342 | None:intergenic | 45.0% | |
| GATGGATGGTCATTGATCAG+TGG | - | chr2.3:54512529-54512548 | MS.gene52420:intron | 45.0% | |
| GGCACTTCAAATTGAAGGCA+TGG | + | chr2.3:54514134-54514153 | None:intergenic | 45.0% | |
| GTATCTGGTGAGAATGTGAG+AGG | + | chr2.3:54513021-54513040 | None:intergenic | 45.0% | |
| TAAAAATGTGGGGAGTGGAG+TGG | - | chr2.3:54513753-54513772 | MS.gene52420:intron | 45.0% | |
| TAGGGTGCAATAGAGATGGA+TGG | - | chr2.3:54512515-54512534 | MS.gene52420:intron | 45.0% | |
| TCATTGTGTTGAGTGCGAAG+GGG | - | chr2.3:54512095-54512114 | MS.gene52420:intron | 45.0% | |
| TCCTGGACACTACTCGAAAA+TGG | + | chr2.3:54513833-54513852 | None:intergenic | 45.0% | |
| TCTGATACCACATCTTCCGA+CGG | + | chr2.3:54514644-54514663 | None:intergenic | 45.0% | |
| ! | CTTCAAATTGAAGGCATGGC+TGG | + | chr2.3:54514130-54514149 | None:intergenic | 45.0% |
| ! | GACTGTCACTTCATATGACC+AGG | - | chr2.3:54512363-54512382 | MS.gene52420:intron | 45.0% |
| ! | GCACTGGCACTTCAAATTGA+AGG | + | chr2.3:54514139-54514158 | None:intergenic | 45.0% |
| !! | ATCTGGCTCTCTATTTGTGG+TGG | - | chr2.3:54514717-54514736 | MS.gene52420:intron | 45.0% |
| !! | CAACACAATGAAGGTGTTGG+AGG | + | chr2.3:54512086-54512105 | None:intergenic | 45.0% |
| !! | GAAGCACTGACACAGACATT+GGG | - | chr2.3:54514009-54514028 | MS.gene52420:intron | 45.0% |
| !! | GTCGGTGTCAAAAACCAACA+CGG | + | chr2.3:54514095-54514114 | None:intergenic | 45.0% |
| !!! | ACCATTTTCGAGTAGTGTCC+AGG | - | chr2.3:54513829-54513848 | MS.gene52420:intron | 45.0% |
| !! | TATAAAAAGTTTAATAATAT+GGG | - | chr2.3:54513477-54513496 | MS.gene52420:intron | 5.0% |
| !!! | ATTTTTTTATATTAATTTTG+GGG | - | chr2.3:54512240-54512259 | MS.gene52420:intron | 5.0% |
| CAAAACTGCCAGTGTGAGGA+AGG | + | chr2.3:54513970-54513989 | None:intergenic | 50.0% | |
| CATTGTGTTGAGTGCGAAGG+GGG | - | chr2.3:54512096-54512115 | MS.gene52420:intron | 50.0% | |
| CTGAAGACACTGAGCTGCAA+TGG | + | chr2.3:54511577-54511596 | None:intergenic | 50.0% | |
| CTTTGTAGCTCGTGGAACGA+TGG | - | chr2.3:54511512-54511531 | MS.gene52420:CDS | 50.0% | |
| GCTACCCTTACCTTACAAGC+CGG | - | chr2.3:54512176-54512195 | MS.gene52420:intron | 50.0% | |
| GGATGGTCATTGATCAGTGG+AGG | - | chr2.3:54512532-54512551 | MS.gene52420:intron | 50.0% | |
| GGTGTGATGGTCACAACTGT+AGG | + | chr2.3:54511628-54511647 | None:intergenic | 50.0% | |
| TGTCTGTGTCAGTGCTTCGT+AGG | + | chr2.3:54514007-54514026 | None:intergenic | 50.0% | |
| ! | AGTCGGCTTTGACACGTTCA+AGG | + | chr2.3:54513333-54513352 | None:intergenic | 50.0% |
| ! | GCGCACAAGTAAGTTGACCA+AGG | - | chr2.3:54514525-54514544 | MS.gene52420:intron | 50.0% |
| !! | CGAAGCACTGACACAGACAT+TGG | - | chr2.3:54514008-54514027 | MS.gene52420:intron | 50.0% |
| AGACACTGAGCTGCAATGGC+AGG | + | chr2.3:54511573-54511592 | None:intergenic | 55.0% | |
| AGCAAGGAACACAGGTCCGT+CGG | - | chr2.3:54514625-54514644 | MS.gene52420:intron | 55.0% | |
| AGCTGCCTAATTGCGGCGTT+TGG | - | chr2.3:54512044-54512063 | MS.gene52420:intron | 55.0% | |
| CACACATGTCAGTGCCGTGT+TGG | - | chr2.3:54514078-54514097 | MS.gene52420:intron | 55.0% | |
| CGGACAAAACTGCCAGTGTG+AGG | + | chr2.3:54513974-54513993 | None:intergenic | 55.0% | |
| GCAACCCAAACGCCGCAATT+AGG | + | chr2.3:54512052-54512071 | None:intergenic | 55.0% | |
| GCTGAGTACACCGAGTTCAC+TGG | - | chr2.3:54511540-54511559 | MS.gene52420:CDS | 55.0% | |
| GCTGCCTAATTGCGGCGTTT+GGG | - | chr2.3:54512045-54512064 | MS.gene52420:intron | 55.0% | |
| GGCTGGTGTCTGACATGTGT+CGG | + | chr2.3:54514113-54514132 | None:intergenic | 55.0% | |
| TCCTTGCACCTTCCTCACAC+TGG | - | chr2.3:54513959-54513978 | MS.gene52420:intron | 55.0% | |
| ! | GGTGTTGGAGGCTGCAATGA+AGG | + | chr2.3:54512074-54512093 | None:intergenic | 55.0% |
| !! | ACGGCACTGACATGTGTGGT+TGG | + | chr2.3:54514076-54514095 | None:intergenic | 55.0% |
| !! | CAACACGGCACTGACATGTG+TGG | + | chr2.3:54514080-54514099 | None:intergenic | 55.0% |
| !! | CGGCACTGACATGTGTGGTT+GGG | + | chr2.3:54514075-54514094 | None:intergenic | 55.0% |
| CACAGGTCCGTCGGAAGATG+TGG | - | chr2.3:54514634-54514653 | MS.gene52420:intron | 60.0% | |
| ! | GCCAGTGTGAGGAAGGTGCA+AGG | + | chr2.3:54513963-54513982 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 54511486 | 54514955 | 54511486 | ID=MS.gene52420 |
| chr2.3 | mRNA | 54511486 | 54514955 | 54511486 | ID=MS.gene52420.t1;Parent=MS.gene52420 |
| chr2.3 | exon | 54514772 | 54514955 | 54514772 | ID=MS.gene52420.t1.exon1;Parent=MS.gene52420.t1 |
| chr2.3 | CDS | 54514772 | 54514955 | 54514772 | ID=cds.MS.gene52420.t1;Parent=MS.gene52420.t1 |
| chr2.3 | exon | 54513022 | 54513163 | 54513022 | ID=MS.gene52420.t1.exon2;Parent=MS.gene52420.t1 |
| chr2.3 | CDS | 54513022 | 54513163 | 54513022 | ID=cds.MS.gene52420.t1;Parent=MS.gene52420.t1 |
| chr2.3 | exon | 54512808 | 54512928 | 54512808 | ID=MS.gene52420.t1.exon3;Parent=MS.gene52420.t1 |
| chr2.3 | CDS | 54512808 | 54512928 | 54512808 | ID=cds.MS.gene52420.t1;Parent=MS.gene52420.t1 |
| chr2.3 | exon | 54511909 | 54511971 | 54511909 | ID=MS.gene52420.t1.exon4;Parent=MS.gene52420.t1 |
| chr2.3 | CDS | 54511909 | 54511971 | 54511909 | ID=cds.MS.gene52420.t1;Parent=MS.gene52420.t1 |
| chr2.3 | exon | 54511803 | 54511832 | 54511803 | ID=MS.gene52420.t1.exon5;Parent=MS.gene52420.t1 |
| chr2.3 | CDS | 54511803 | 54511832 | 54511803 | ID=cds.MS.gene52420.t1;Parent=MS.gene52420.t1 |
| chr2.3 | exon | 54511658 | 54511726 | 54511658 | ID=MS.gene52420.t1.exon6;Parent=MS.gene52420.t1 |
| chr2.3 | CDS | 54511658 | 54511726 | 54511658 | ID=cds.MS.gene52420.t1;Parent=MS.gene52420.t1 |
| chr2.3 | exon | 54511486 | 54511578 | 54511486 | ID=MS.gene52420.t1.exon7;Parent=MS.gene52420.t1 |
| chr2.3 | CDS | 54511486 | 54511578 | 54511486 | ID=cds.MS.gene52420.t1;Parent=MS.gene52420.t1 |
| Gene Sequence |
| Protein sequence |
