Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52797.t1 | XP_003603845.1 | 87.2 | 423 | 54 | 0 | 1 | 423 | 1 | 423 | 1.00E-215 | 759.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52797.t1 | P50134 | 58.1 | 413 | 172 | 1 | 11 | 423 | 19 | 430 | 3.4e-135 | 483.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52797.t1 | G7J5X8 | 87.2 | 423 | 54 | 0 | 1 | 423 | 1 | 423 | 7.3e-216 | 759.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04932 | MS.gene52797 | 0.811821 | 5.78E-51 | -1.69E-46 |
| MS.gene049549 | MS.gene52797 | 0.824861 | 6.42E-54 | -1.69E-46 |
| MS.gene050720 | MS.gene52797 | 0.810356 | 1.20E-50 | -1.69E-46 |
| MS.gene051439 | MS.gene52797 | 0.804492 | 2.10E-49 | -1.69E-46 |
| MS.gene052211 | MS.gene52797 | 0.801956 | 7.05E-49 | -1.69E-46 |
| MS.gene05240 | MS.gene52797 | 0.801774 | 7.68E-49 | -1.69E-46 |
| MS.gene052606 | MS.gene52797 | 0.806999 | 6.26E-50 | -1.69E-46 |
| MS.gene052705 | MS.gene52797 | 0.826103 | 3.26E-54 | -1.69E-46 |
| MS.gene053406 | MS.gene52797 | 0.810022 | 1.42E-50 | -1.69E-46 |
| MS.gene054277 | MS.gene52797 | 0.817348 | 3.46E-52 | -1.69E-46 |
| MS.gene054742 | MS.gene52797 | 0.850553 | 1.58E-60 | -1.69E-46 |
| MS.gene055240 | MS.gene52797 | 0.824728 | 6.90E-54 | -1.69E-46 |
| MS.gene056330 | MS.gene52797 | 0.803967 | 2.71E-49 | -1.69E-46 |
| MS.gene056590 | MS.gene52797 | 0.810071 | 1.38E-50 | -1.69E-46 |
| MS.gene056591 | MS.gene52797 | 0.809316 | 2.01E-50 | -1.69E-46 |
| MS.gene056680 | MS.gene52797 | 0.831827 | 1.34E-55 | -1.69E-46 |
| MS.gene056714 | MS.gene52797 | 0.813865 | 2.06E-51 | -1.69E-46 |
| MS.gene056748 | MS.gene52797 | 0.822021 | 2.96E-53 | -1.69E-46 |
| MS.gene056920 | MS.gene52797 | 0.845925 | 3.00E-59 | -1.69E-46 |
| MS.gene056922 | MS.gene52797 | 0.814834 | 1.26E-51 | -1.69E-46 |
| MS.gene057261 | MS.gene52797 | 0.807789 | 4.26E-50 | -1.69E-46 |
| MS.gene057544 | MS.gene52797 | 0.810481 | 1.13E-50 | -1.69E-46 |
| MS.gene058603 | MS.gene52797 | 0.817182 | 3.77E-52 | -1.69E-46 |
| MS.gene059328 | MS.gene52797 | 0.817557 | 3.10E-52 | -1.69E-46 |
| MS.gene059891 | MS.gene52797 | 0.809801 | 1.58E-50 | -1.69E-46 |
| MS.gene059892 | MS.gene52797 | 0.819155 | 1.35E-52 | -1.69E-46 |
| MS.gene059955 | MS.gene52797 | 0.825538 | 4.44E-54 | -1.69E-46 |
| MS.gene060087 | MS.gene52797 | 0.868562 | 5.95E-66 | -1.69E-46 |
| MS.gene061094 | MS.gene52797 | 0.801913 | 7.19E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52797.t1 | MTR_3g114870 | 87.234 | 423 | 54 | 0 | 1 | 423 | 1 | 423 | 0.0 | 769 |
| MS.gene52797.t1 | MTR_3g114890 | 81.527 | 406 | 49 | 3 | 22 | 427 | 54 | 433 | 0.0 | 650 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 97 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGCAGCTTCATCAAATT+TGG | 0.134844 | 3.1:+90939120 | None:intergenic |
| TGGGCTTCAGGTTGGCAATT+TGG | 0.174820 | 3.1:+90939872 | None:intergenic |
| TTGGCTTGTGTTTCCAAATA+TGG | 0.194285 | 3.1:-90938741 | MS.gene52797:CDS |
| CATTTAGCGTCCTTGATTTA+AGG | 0.195088 | 3.1:-90939735 | MS.gene52797:CDS |
| AACTTCTTTAGCTGATAATA+TGG | 0.239934 | 3.1:+90939216 | None:intergenic |
| GTTGTATATGCACCCATATT+TGG | 0.244783 | 3.1:+90938728 | None:intergenic |
| CGGAGGAGGAGCTCACATTT+TGG | 0.255015 | 3.1:+90939412 | None:intergenic |
| GGGCTTCAGGTTGGCAATTT+GGG | 0.261179 | 3.1:+90939873 | None:intergenic |
| GACAAGGATCTTGTTGTTAT+TGG | 0.275664 | 3.1:-90939061 | MS.gene52797:CDS |
| AAAATGAAAATTCTTGATAT+TGG | 0.275753 | 3.1:-90939163 | MS.gene52797:CDS |
| GGAGCAAAACCCATTGAAAT+TGG | 0.277439 | 3.1:+90938694 | None:intergenic |
| TTACACTTAACAGCGTAAAA+AGG | 0.288780 | 3.1:+90939661 | None:intergenic |
| ATTGGTGGTGGATTCACTTC+TGG | 0.295664 | 3.1:-90939145 | MS.gene52797:CDS |
| CTTAAATCAAGGACGCTAAA+TGG | 0.304128 | 3.1:+90939736 | None:intergenic |
| GGTGCATATACAACTTCTTC+TGG | 0.309142 | 3.1:-90938719 | MS.gene52797:CDS |
| GCGGCTGGCGCAGTCGAAAT+TGG | 0.315367 | 3.1:+90939597 | None:intergenic |
| TGGATCAATGATGGAATTTA+CGG | 0.338014 | 3.1:-90938950 | MS.gene52797:CDS |
| GCATCTTTGAGTGTCAAATA+TGG | 0.350668 | 3.1:-90939358 | MS.gene52797:CDS |
| ATTTAGCGTCCTTGATTTAA+GGG | 0.350890 | 3.1:-90939734 | MS.gene52797:CDS |
| CAATCGTTCACCTCAAGTTC+AGG | 0.366769 | 3.1:+90938761 | None:intergenic |
| AATCCAAACATTTCACTTGT+AGG | 0.370462 | 3.1:-90939640 | MS.gene52797:CDS |
| TAACCACCTTTGACTCTGTT+GGG | 0.375313 | 3.1:-90939462 | MS.gene52797:CDS |
| TCTTCTGGAACCAATTTCAA+TGG | 0.383904 | 3.1:-90938704 | MS.gene52797:CDS |
| TCTTTGTATGTAACATTCTC+AGG | 0.402388 | 3.1:+90938860 | None:intergenic |
| ACATGCACCCCACTTAGGTT+TGG | 0.403271 | 3.1:-90938890 | MS.gene52797:CDS |
| GGATAAAACAGATTCAATTT+CGG | 0.407398 | 3.1:+90939573 | None:intergenic |
| ATCAGCAGCTTTGAGAAGCT+TGG | 0.407701 | 3.1:+90939315 | None:intergenic |
| AATTTGGGATAGGGATTCTT+CGG | 0.416647 | 3.1:+90939888 | None:intergenic |
| CTTGTTGTTATTGGTGAACC+TGG | 0.425304 | 3.1:-90939052 | MS.gene52797:CDS |
| AGATTCAATTTCGGTGCGGC+TGG | 0.435147 | 3.1:+90939582 | None:intergenic |
| GTGGCGGGACTTAAAGTAAC+TGG | 0.439278 | 3.1:-90939292 | MS.gene52797:CDS |
| CTTCTGGAACCAATTTCAAT+GGG | 0.439459 | 3.1:-90938703 | MS.gene52797:CDS |
| ATAATTTATTCTTGCCCGAC+AGG | 0.443813 | 3.1:+90938638 | None:intergenic |
| TCAGGTTGGCAATTTGGGAT+AGG | 0.448215 | 3.1:+90939878 | None:intergenic |
| CAGGTTGGCAATTTGGGATA+GGG | 0.452166 | 3.1:+90939879 | None:intergenic |
| GTGCCTACAAGTGAAATGTT+TGG | 0.453016 | 3.1:+90939637 | None:intergenic |
| TGGCTTGTGTTTCCAAATAT+GGG | 0.454466 | 3.1:-90938740 | MS.gene52797:CDS |
| TAATTGATCTTATGAACAAA+TGG | 0.458554 | 3.1:-90939708 | MS.gene52797:CDS |
| TCAGCAGCTTTGAGAAGCTT+GGG | 0.462319 | 3.1:+90939316 | None:intergenic |
| TTAACCACCTTTGACTCTGT+TGG | 0.464020 | 3.1:-90939463 | MS.gene52797:CDS |
| CTCTTTGAGAACCGTATCAA+TGG | 0.466778 | 3.1:+90938793 | None:intergenic |
| AAAATTCTTGATATTGGTGG+TGG | 0.474122 | 3.1:-90939157 | MS.gene52797:CDS |
| TACCTTCCTCCGTCTTAATA+CGG | 0.482251 | 3.1:+90939392 | None:intergenic |
| CGGCTCCTCCACTGCCTATG+TGG | 0.490949 | 3.1:+90939260 | None:intergenic |
| CTCAAAGCTGCTGATGTGGC+GGG | 0.492245 | 3.1:-90939307 | MS.gene52797:CDS |
| TTTGAAACAGCTACACGGCT+TGG | 0.493170 | 3.1:-90939193 | MS.gene52797:CDS |
| CACCTTTGACTCTGTTGGGG+AGG | 0.495065 | 3.1:-90939458 | MS.gene52797:CDS |
| AGAGAGTATTGGATCAATGA+TGG | 0.520184 | 3.1:-90938959 | MS.gene52797:CDS |
| ATGAAAATTCTTGATATTGG+TGG | 0.524512 | 3.1:-90939160 | MS.gene52797:CDS |
| ATTAAGACGGAGGAAGGTAG+TGG | 0.527699 | 3.1:-90939388 | MS.gene52797:CDS |
| TTTGGTGCTTCAGGAGTGAA+AGG | 0.530590 | 3.1:-90939847 | MS.gene52797:CDS |
| AACTTGTGATGCCATTGATA+CGG | 0.532310 | 3.1:-90938804 | MS.gene52797:CDS |
| TTCTGTCGGGTGAAACGCCA+AGG | 0.534531 | 3.1:+90939551 | None:intergenic |
| TTGCATGTTCAAGTCCTGTC+GGG | 0.538581 | 3.1:-90938652 | MS.gene52797:CDS |
| TCACCTCAAGTTCAGGTAGC+AGG | 0.539377 | 3.1:+90938768 | None:intergenic |
| GCTTCTCAAAGCTGCTGATG+TGG | 0.545870 | 3.1:-90939311 | MS.gene52797:CDS |
| TTCTCACATGCACCCCACTT+AGG | 0.546355 | 3.1:-90938895 | MS.gene52797:CDS |
| TAACTCTGATTTACACGGGT+TGG | 0.547050 | 3.1:+90939519 | None:intergenic |
| CTCCGTATTAAGACGGAGGA+AGG | 0.550571 | 3.1:-90939394 | MS.gene52797:CDS |
| CTTGCATGTTCAAGTCCTGT+CGG | 0.550768 | 3.1:-90938653 | MS.gene52797:CDS |
| GTAGGCACATTAGCTTCACT+TGG | 0.550820 | 3.1:-90939622 | MS.gene52797:CDS |
| CAATTACAACCCTTAAATCA+AGG | 0.551290 | 3.1:+90939725 | None:intergenic |
| TCTCAAAGCTGCTGATGTGG+CGG | 0.552805 | 3.1:-90939308 | MS.gene52797:CDS |
| ATGTGTAACTCTGATTTACA+CGG | 0.553353 | 3.1:+90939514 | None:intergenic |
| ATTAAATATGCTGCAAGTGT+CGG | 0.554694 | 3.1:-90939493 | MS.gene52797:CDS |
| AACCACCTTTGACTCTGTTG+GGG | 0.557898 | 3.1:-90939461 | MS.gene52797:CDS |
| GTTTCCGAAAAGTAACGGCC+AGG | 0.558733 | 3.1:+90939034 | None:intergenic |
| TCCTAAAACTTACCCATCAA+CGG | 0.560643 | 3.1:-90938837 | MS.gene52797:CDS |
| AACCTCCCCAACAGAGTCAA+AGG | 0.562889 | 3.1:+90939456 | None:intergenic |
| AGTTACAACTTTGTCATCAG+AGG | 0.563388 | 3.1:-90939818 | MS.gene52797:CDS |
| CTGAACTTGAGGTGAACGAT+TGG | 0.567508 | 3.1:-90938760 | MS.gene52797:CDS |
| AGGTTGAAAAGATAAAGAAA+TGG | 0.568856 | 3.1:-90939438 | MS.gene52797:CDS |
| TTGGCATAGATGATTCTGTC+GGG | 0.569299 | 3.1:+90939538 | None:intergenic |
| GATTCTTCGGCTACTAGTGT+AGG | 0.578341 | 3.1:+90939901 | None:intergenic |
| CCTCCGTCTTAATACGGAGG+AGG | 0.581352 | 3.1:+90939398 | None:intergenic |
| GGGATGAGCTGAGAGAGTAT+TGG | 0.583313 | 3.1:-90938970 | MS.gene52797:CDS |
| TGTGTAACTCTGATTTACAC+GGG | 0.588484 | 3.1:+90939515 | None:intergenic |
| AATTATTGGAAAACGTGTGA+GGG | 0.589559 | 3.1:-90938990 | MS.gene52797:CDS |
| GTACCTGCTACCTGAACTTG+AGG | 0.601377 | 3.1:-90938771 | MS.gene52797:CDS |
| AAATTATTGGAAAACGTGTG+AGG | 0.602326 | 3.1:-90938991 | MS.gene52797:CDS |
| CGACAGGACTTGAACATGCA+AGG | 0.611121 | 3.1:+90938654 | None:intergenic |
| AACTCATTTCGGAAATGACA+AGG | 0.614579 | 3.1:-90939077 | MS.gene52797:CDS |
| GTATCGTTCCACATAGGCAG+TGG | 0.616728 | 3.1:-90939268 | MS.gene52797:CDS |
| ATGTCGTTTCCGAAAAGTAA+CGG | 0.625854 | 3.1:+90939029 | None:intergenic |
| GTATCAATGGCATCACAAGT+TGG | 0.627608 | 3.1:+90938806 | None:intergenic |
| TCGTTCCACATAGGCAGTGG+AGG | 0.632211 | 3.1:-90939265 | MS.gene52797:CDS |
| GCTCCTCCTCCGTATTAAGA+CGG | 0.645011 | 3.1:-90939401 | MS.gene52797:CDS |
| GTTGGCATAGATGATTCTGT+CGG | 0.646092 | 3.1:+90939537 | None:intergenic |
| AAGGTAAATGTCCTTAGCTG+TGG | 0.650676 | 3.1:+90938673 | None:intergenic |
| GCCGATGCAAAAGCTTACCA+CGG | 0.668156 | 3.1:-90939241 | MS.gene52797:CDS |
| TCTGTCGGGTGAAACGCCAA+GGG | 0.670155 | 3.1:+90939552 | None:intergenic |
| ACTGGCGTATCGTTCCACAT+AGG | 0.686836 | 3.1:-90939274 | MS.gene52797:CDS |
| CCTCCTCCGTATTAAGACGG+AGG | 0.688874 | 3.1:-90939398 | MS.gene52797:CDS |
| AAACAGATTCAATTTCGGTG+CGG | 0.697986 | 3.1:+90939578 | None:intergenic |
| CTTCCTCCGTCTTAATACGG+AGG | 0.698108 | 3.1:+90939395 | None:intergenic |
| CTCCCCAACAGAGTCAAAGG+TGG | 0.708675 | 3.1:+90939459 | None:intergenic |
| TAGCTGATAATATGGCTCCG+TGG | 0.725730 | 3.1:+90939224 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATGAAAATTCTTGATAT+TGG | - | chr3.1:90939384-90939403 | MS.gene52797:CDS | 15.0% |
| !!! | ATATCAAGAATTTTCATTTT+TGG | + | chr3.1:90939384-90939403 | None:intergenic | 15.0% |
| !! | ACATTAGCAACAAAAATTAT+TGG | - | chr3.1:90939543-90939562 | MS.gene52797:CDS | 20.0% |
| !! | TAATTGATCTTATGAACAAA+TGG | - | chr3.1:90938839-90938858 | MS.gene52797:CDS | 20.0% |
| ! | AACTTCTTTAGCTGATAATA+TGG | + | chr3.1:90939334-90939353 | None:intergenic | 25.0% |
| ! | AGGTTGAAAAGATAAAGAAA+TGG | - | chr3.1:90939109-90939128 | MS.gene52797:CDS | 25.0% |
| ! | ATGAAAATTCTTGATATTGG+TGG | - | chr3.1:90939387-90939406 | MS.gene52797:CDS | 25.0% |
| ! | GATGCAATAAAAACTCATTT+CGG | - | chr3.1:90939459-90939478 | MS.gene52797:CDS | 25.0% |
| ! | GGATAAAACAGATTCAATTT+CGG | + | chr3.1:90938977-90938996 | None:intergenic | 25.0% |
| !!! | AGCTGGTTTGTTTTTAATAA+CGG | + | chr3.1:90938779-90938798 | None:intergenic | 25.0% |
| AAAATTCTTGATATTGGTGG+TGG | - | chr3.1:90939390-90939409 | MS.gene52797:CDS | 30.0% | |
| AAATTATTGGAAAACGTGTG+AGG | - | chr3.1:90939556-90939575 | MS.gene52797:CDS | 30.0% | |
| AATCCAAACATTTCACTTGT+AGG | - | chr3.1:90938907-90938926 | MS.gene52797:CDS | 30.0% | |
| AATTATTGGAAAACGTGTGA+GGG | - | chr3.1:90939557-90939576 | MS.gene52797:CDS | 30.0% | |
| ATGTGTAACTCTGATTTACA+CGG | + | chr3.1:90939036-90939055 | None:intergenic | 30.0% | |
| ATTAAATATGCTGCAAGTGT+CGG | - | chr3.1:90939054-90939073 | MS.gene52797:CDS | 30.0% | |
| ATTTAGCGTCCTTGATTTAA+GGG | - | chr3.1:90938813-90938832 | MS.gene52797:CDS | 30.0% | |
| CAATTACAACCCTTAAATCA+AGG | + | chr3.1:90938825-90938844 | None:intergenic | 30.0% | |
| TCTTTGTATGTAACATTCTC+AGG | + | chr3.1:90939690-90939709 | None:intergenic | 30.0% | |
| TTACACTTAACAGCGTAAAA+AGG | + | chr3.1:90938889-90938908 | None:intergenic | 30.0% | |
| ! | ATTGAATCTGTTTTATCCCT+TGG | - | chr3.1:90938979-90938998 | MS.gene52797:CDS | 30.0% |
| ! | CTTAACAGTTGGAAGTTTTA+TGG | + | chr3.1:90938866-90938885 | None:intergenic | 30.0% |
| ! | TGGATCAATGATGGAATTTA+CGG | - | chr3.1:90939597-90939616 | MS.gene52797:CDS | 30.0% |
| !!! | AAGTTTTTGAAACAGCTACA+CGG | - | chr3.1:90939349-90939368 | MS.gene52797:CDS | 30.0% |
| AAACAGATTCAATTTCGGTG+CGG | + | chr3.1:90938972-90938991 | None:intergenic | 35.0% | |
| AACTCATTTCGGAAATGACA+AGG | - | chr3.1:90939470-90939489 | MS.gene52797:CDS | 35.0% | |
| AACTTGTGATGCCATTGATA+CGG | - | chr3.1:90939743-90939762 | MS.gene52797:CDS | 35.0% | |
| AGTTACAACTTTGTCATCAG+AGG | - | chr3.1:90938729-90938748 | MS.gene52797:CDS | 35.0% | |
| CAATGCAGCTTCATCAAATT+TGG | + | chr3.1:90939430-90939449 | None:intergenic | 35.0% | |
| CATTTAGCGTCCTTGATTTA+AGG | - | chr3.1:90938812-90938831 | MS.gene52797:CDS | 35.0% | |
| CTTAAATCAAGGACGCTAAA+TGG | + | chr3.1:90938814-90938833 | None:intergenic | 35.0% | |
| GCATCTTTGAGTGTCAAATA+TGG | - | chr3.1:90939189-90939208 | MS.gene52797:CDS | 35.0% | |
| GTTGTATATGCACCCATATT+TGG | + | chr3.1:90939822-90939841 | None:intergenic | 35.0% | |
| TCCTAAAACTTACCCATCAA+CGG | - | chr3.1:90939710-90939729 | MS.gene52797:CDS | 35.0% | |
| TGTGTAACTCTGATTTACAC+GGG | + | chr3.1:90939035-90939054 | None:intergenic | 35.0% | |
| ! | AATTTGGGATAGGGATTCTT+CGG | + | chr3.1:90938662-90938681 | None:intergenic | 35.0% |
| ! | ATGTCGTTTCCGAAAAGTAA+CGG | + | chr3.1:90939521-90939540 | None:intergenic | 35.0% |
| ! | TGGCTTGTGTTTCCAAATAT+GGG | - | chr3.1:90939807-90939826 | MS.gene52797:CDS | 35.0% |
| ! | TTTTGAACCAAACCTAAGTG+GGG | + | chr3.1:90939667-90939686 | None:intergenic | 35.0% |
| !! | AGAGAGTATTGGATCAATGA+TGG | - | chr3.1:90939588-90939607 | MS.gene52797:CDS | 35.0% |
| !! | CTTCTGGAACCAATTTCAAT+GGG | - | chr3.1:90939844-90939863 | MS.gene52797:CDS | 35.0% |
| !! | GACAAGGATCTTGTTGTTAT+TGG | - | chr3.1:90939486-90939505 | MS.gene52797:CDS | 35.0% |
| !! | GTTTTGAACCAAACCTAAGT+GGG | + | chr3.1:90939668-90939687 | None:intergenic | 35.0% |
| !! | TCTTCTGGAACCAATTTCAA+TGG | - | chr3.1:90939843-90939862 | MS.gene52797:CDS | 35.0% |
| !! | TTGGCTTGTGTTTCCAAATA+TGG | - | chr3.1:90939806-90939825 | MS.gene52797:CDS | 35.0% |
| AAGGTAAATGTCCTTAGCTG+TGG | + | chr3.1:90939877-90939896 | None:intergenic | 40.0% | |
| GCGTAAAAAGGCTTAACAGT+TGG | + | chr3.1:90938877-90938896 | None:intergenic | 40.0% | |
| GGAGCAAAACCCATTGAAAT+TGG | + | chr3.1:90939856-90939875 | None:intergenic | 40.0% | |
| GGTGCATATACAACTTCTTC+TGG | - | chr3.1:90939828-90939847 | MS.gene52797:CDS | 40.0% | |
| GTATCAATGGCATCACAAGT+TGG | + | chr3.1:90939744-90939763 | None:intergenic | 40.0% | |
| GTGCCTACAAGTGAAATGTT+TGG | + | chr3.1:90938913-90938932 | None:intergenic | 40.0% | |
| GTTGGCATAGATGATTCTGT+CGG | + | chr3.1:90939013-90939032 | None:intergenic | 40.0% | |
| TAACCACCTTTGACTCTGTT+GGG | - | chr3.1:90939085-90939104 | MS.gene52797:CDS | 40.0% | |
| TAACTCTGATTTACACGGGT+TGG | + | chr3.1:90939031-90939050 | None:intergenic | 40.0% | |
| TACCTTCCTCCGTCTTAATA+CGG | + | chr3.1:90939158-90939177 | None:intergenic | 40.0% | |
| TTAACCACCTTTGACTCTGT+TGG | - | chr3.1:90939084-90939103 | MS.gene52797:CDS | 40.0% | |
| TTGGCATAGATGATTCTGTC+GGG | + | chr3.1:90939012-90939031 | None:intergenic | 40.0% | |
| TTGGTCCAAAAACCGTTGAT+GGG | + | chr3.1:90939725-90939744 | None:intergenic | 40.0% | |
| ! | ACTCCTGAAGCACCAAAAAT+GGG | + | chr3.1:90938697-90938716 | None:intergenic | 40.0% |
| ! | ACTTACCCATCAACGGTTTT+TGG | - | chr3.1:90939717-90939736 | MS.gene52797:CDS | 40.0% |
| ! | CTCTTTGAGAACCGTATCAA+TGG | + | chr3.1:90939757-90939776 | None:intergenic | 40.0% |
| !! | AATGGTGAGTCATTTTCAGC+TGG | + | chr3.1:90938796-90938815 | None:intergenic | 40.0% |
| !! | ACCGTTGATGGGTAAGTTTT+AGG | + | chr3.1:90939714-90939733 | None:intergenic | 40.0% |
| !! | CTTGTTGTTATTGGTGAACC+TGG | - | chr3.1:90939495-90939514 | MS.gene52797:CDS | 40.0% |
| !!! | GGTTTTGAACCAAACCTAAG+TGG | + | chr3.1:90939669-90939688 | None:intergenic | 40.0% |
| AACCACCTTTGACTCTGTTG+GGG | - | chr3.1:90939086-90939105 | MS.gene52797:CDS | 45.0% | |
| ATTAAGACGGAGGAAGGTAG+TGG | - | chr3.1:90939159-90939178 | MS.gene52797:CDS | 45.0% | |
| CAATCGTTCACCTCAAGTTC+AGG | + | chr3.1:90939789-90939808 | None:intergenic | 45.0% | |
| CTGAACTTGAGGTGAACGAT+TGG | - | chr3.1:90939787-90939806 | MS.gene52797:CDS | 45.0% | |
| CTTGCATGTTCAAGTCCTGT+CGG | - | chr3.1:90939894-90939913 | MS.gene52797:CDS | 45.0% | |
| GATTCTTCGGCTACTAGTGT+AGG | + | chr3.1:90938649-90938668 | None:intergenic | 45.0% | |
| GTTGGTCCAAAAACCGTTGA+TGG | + | chr3.1:90939726-90939745 | None:intergenic | 45.0% | |
| TAGCTGATAATATGGCTCCG+TGG | + | chr3.1:90939326-90939345 | None:intergenic | 45.0% | |
| TTGCATGTTCAAGTCCTGTC+GGG | - | chr3.1:90939895-90939914 | MS.gene52797:CDS | 45.0% | |
| ! | AAGCACCAAAAATGGGCTTC+AGG | + | chr3.1:90938690-90938709 | None:intergenic | 45.0% |
| ! | ACCAAAAATGGGCTTCAGGT+TGG | + | chr3.1:90938686-90938705 | None:intergenic | 45.0% |
| ! | CACTCCTGAAGCACCAAAAA+TGG | + | chr3.1:90938698-90938717 | None:intergenic | 45.0% |
| ! | CAGGTTGGCAATTTGGGATA+GGG | + | chr3.1:90938671-90938690 | None:intergenic | 45.0% |
| ! | GTAGGCACATTAGCTTCACT+TGG | - | chr3.1:90938925-90938944 | MS.gene52797:CDS | 45.0% |
| ! | TCCGTGGTAAGCTTTTGCAT+CGG | + | chr3.1:90939310-90939329 | None:intergenic | 45.0% |
| ! | TTTGAAACAGCTACACGGCT+TGG | - | chr3.1:90939354-90939373 | MS.gene52797:CDS | 45.0% |
| !! | ATCAGCAGCTTTGAGAAGCT+TGG | + | chr3.1:90939235-90939254 | None:intergenic | 45.0% |
| !! | ATTGGTGGTGGATTCACTTC+TGG | - | chr3.1:90939402-90939421 | MS.gene52797:CDS | 45.0% |
| !! | TCAGCAGCTTTGAGAAGCTT+GGG | + | chr3.1:90939234-90939253 | None:intergenic | 45.0% |
| !! | TCAGGTTGGCAATTTGGGAT+AGG | + | chr3.1:90938672-90938691 | None:intergenic | 45.0% |
| !! | TTTGGTGCTTCAGGAGTGAA+AGG | - | chr3.1:90938700-90938719 | MS.gene52797:CDS | 45.0% |
| !!! | AAGCCCATTTTTGGTGCTTC+AGG | - | chr3.1:90938691-90938710 | MS.gene52797:CDS | 45.0% |
| !!! | TGAACCTGGCCGTTACTTTT+CGG | - | chr3.1:90939509-90939528 | MS.gene52797:CDS | 45.0% |
| AACCTCCCCAACAGAGTCAA+AGG | + | chr3.1:90939094-90939113 | None:intergenic | 50.0% | |
| ACATGCACCCCACTTAGGTT+TGG | - | chr3.1:90939657-90939676 | MS.gene52797:CDS | 50.0% | |
| ACTGGCGTATCGTTCCACAT+AGG | - | chr3.1:90939273-90939292 | MS.gene52797:CDS | 50.0% | |
| CGACAGGACTTGAACATGCA+AGG | + | chr3.1:90939896-90939915 | None:intergenic | 50.0% | |
| CTCCGTATTAAGACGGAGGA+AGG | - | chr3.1:90939153-90939172 | MS.gene52797:CDS | 50.0% | |
| CTTCCTCCGTCTTAATACGG+AGG | + | chr3.1:90939155-90939174 | None:intergenic | 50.0% | |
| GCCGATGCAAAAGCTTACCA+CGG | - | chr3.1:90939306-90939325 | MS.gene52797:CDS | 50.0% | |
| GCTCCTCCTCCGTATTAAGA+CGG | - | chr3.1:90939146-90939165 | MS.gene52797:CDS | 50.0% | |
| GCTTCTCAAAGCTGCTGATG+TGG | - | chr3.1:90939236-90939255 | MS.gene52797:CDS | 50.0% | |
| GTACCTGCTACCTGAACTTG+AGG | - | chr3.1:90939776-90939795 | MS.gene52797:CDS | 50.0% | |
| GTATCGTTCCACATAGGCAG+TGG | - | chr3.1:90939279-90939298 | MS.gene52797:CDS | 50.0% | |
| GTTTCCGAAAAGTAACGGCC+AGG | + | chr3.1:90939516-90939535 | None:intergenic | 50.0% | |
| TCACCTCAAGTTCAGGTAGC+AGG | + | chr3.1:90939782-90939801 | None:intergenic | 50.0% | |
| TCTCAAAGCTGCTGATGTGG+CGG | - | chr3.1:90939239-90939258 | MS.gene52797:CDS | 50.0% | |
| TTCTCACATGCACCCCACTT+AGG | - | chr3.1:90939652-90939671 | MS.gene52797:CDS | 50.0% | |
| ! | AGATTCAATTTCGGTGCGGC+TGG | + | chr3.1:90938968-90938987 | None:intergenic | 50.0% |
| ! | GCCAACCTGAAGCCCATTTT+TGG | - | chr3.1:90938682-90938701 | MS.gene52797:CDS | 50.0% |
| ! | GGGATGAGCTGAGAGAGTAT+TGG | - | chr3.1:90939577-90939596 | MS.gene52797:CDS | 50.0% |
| ! | GTGGCGGGACTTAAAGTAAC+TGG | - | chr3.1:90939255-90939274 | MS.gene52797:CDS | 50.0% |
| ! | TGGGTTTTGCTCCACAGCTA+AGG | - | chr3.1:90939863-90939882 | MS.gene52797:CDS | 50.0% |
| !! | GGGCTTCAGGTTGGCAATTT+GGG | + | chr3.1:90938677-90938696 | None:intergenic | 50.0% |
| !! | TGGGCTTCAGGTTGGCAATT+TGG | + | chr3.1:90938678-90938697 | None:intergenic | 50.0% |
| CACCTTTGACTCTGTTGGGG+AGG | - | chr3.1:90939089-90939108 | MS.gene52797:CDS | 55.0% | |
| CCTCCGTCTTAATACGGAGG+AGG | + | chr3.1:90939152-90939171 | None:intergenic | 55.0% | |
| CCTCCTCCGTATTAAGACGG+AGG | - | chr3.1:90939149-90939168 | MS.gene52797:CDS | 55.0% | |
| CTCAAAGCTGCTGATGTGGC+GGG | - | chr3.1:90939240-90939259 | MS.gene52797:CDS | 55.0% | |
| CTCCCCAACAGAGTCAAAGG+TGG | + | chr3.1:90939091-90939110 | None:intergenic | 55.0% | |
| TCGTTCCACATAGGCAGTGG+AGG | - | chr3.1:90939282-90939301 | MS.gene52797:CDS | 55.0% | |
| TCTGTCGGGTGAAACGCCAA+GGG | + | chr3.1:90938998-90939017 | None:intergenic | 55.0% | |
| TTCTGTCGGGTGAAACGCCA+AGG | + | chr3.1:90938999-90939018 | None:intergenic | 55.0% | |
| ! | CGGAGGAGGAGCTCACATTT+TGG | + | chr3.1:90939138-90939157 | None:intergenic | 55.0% |
| CGGCTCCTCCACTGCCTATG+TGG | + | chr3.1:90939290-90939309 | None:intergenic | 65.0% | |
| GCGGCTGGCGCAGTCGAAAT+TGG | + | chr3.1:90938953-90938972 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 90938643 | 90939926 | 90938643 | ID=MS.gene52797 |
| chr3.1 | mRNA | 90938643 | 90939926 | 90938643 | ID=MS.gene52797.t1;Parent=MS.gene52797 |
| chr3.1 | exon | 90938643 | 90939926 | 90938643 | ID=MS.gene52797.t1.exon1;Parent=MS.gene52797.t1 |
| chr3.1 | CDS | 90938643 | 90939926 | 90938643 | ID=cds.MS.gene52797.t1;Parent=MS.gene52797.t1 |
| Gene Sequence |
| Protein sequence |
