Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53499.t1 | XP_013446699.1 | 98.8 | 582 | 7 | 0 | 1 | 582 | 1 | 582 | 0.00E+00 | 1106.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53499.t1 | Q84MA5 | 66.9 | 553 | 182 | 1 | 6 | 557 | 16 | 568 | 2.0e-210 | 733.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53499.t1 | A0A072TU60 | 98.8 | 582 | 7 | 0 | 1 | 582 | 1 | 582 | 0.0e+00 | 1106.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene49831 | MS.gene53499 | PPI |
| MS.gene53499 | MS.gene32277 | PPI |
| MS.gene41790 | MS.gene53499 | PPI |
| MS.gene53499 | MS.gene08148 | PPI |
| MS.gene007811 | MS.gene53499 | PPI |
| MS.gene53499 | MS.gene042480 | PPI |
| MS.gene41792 | MS.gene53499 | PPI |
| MS.gene38965 | MS.gene53499 | PPI |
| MS.gene38964 | MS.gene53499 | PPI |
| MS.gene53499 | MS.gene007812 | PPI |
| MS.gene58674 | MS.gene53499 | PPI |
| MS.gene53499 | MS.gene08144 | PPI |
| MS.gene53499 | MS.gene073450 | PPI |
| MS.gene53499 | MS.gene41795 | PPI |
| MS.gene032361 | MS.gene53499 | PPI |
| MS.gene53499 | MS.gene041367 | PPI |
| MS.gene53499 | MS.gene00402 | PPI |
| MS.gene042491 | MS.gene53499 | PPI |
| MS.gene53499 | MS.gene47297 | PPI |
| MS.gene53499 | MS.gene08137 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53499.t1 | MTR_8g089360 | 98.797 | 582 | 7 | 0 | 1 | 582 | 1 | 582 | 0.0 | 1174 |
| MS.gene53499.t1 | MTR_8g089360 | 98.797 | 582 | 7 | 0 | 1 | 582 | 18 | 599 | 0.0 | 1172 |
| MS.gene53499.t1 | MTR_8g089320 | 74.042 | 574 | 145 | 3 | 9 | 578 | 21 | 594 | 0.0 | 855 |
| MS.gene53499.t1 | MTR_1g030660 | 61.034 | 580 | 220 | 3 | 1 | 579 | 10 | 584 | 0.0 | 716 |
| MS.gene53499.t1 | MTR_2g035430 | 56.743 | 571 | 245 | 2 | 8 | 577 | 20 | 589 | 0.0 | 673 |
| MS.gene53499.t1 | MTR_8g089340 | 72.931 | 447 | 116 | 2 | 137 | 578 | 1 | 447 | 0.0 | 619 |
| MS.gene53499.t1 | MTR_8g461380 | 50.268 | 559 | 274 | 3 | 8 | 563 | 27 | 584 | 0.0 | 550 |
| MS.gene53499.t1 | MTR_1g111740 | 42.660 | 579 | 307 | 6 | 16 | 579 | 6 | 574 | 3.93e-153 | 452 |
| MS.gene53499.t1 | MTR_4g099270 | 39.817 | 545 | 313 | 6 | 48 | 581 | 10 | 550 | 3.98e-123 | 374 |
| MS.gene53499.t1 | MTR_4g099270 | 44.828 | 377 | 204 | 2 | 20 | 392 | 3 | 379 | 1.84e-103 | 318 |
| MS.gene53499.t1 | MTR_4g099270 | 37.330 | 442 | 262 | 6 | 151 | 581 | 1 | 438 | 2.37e-89 | 283 |
| MS.gene53499.t1 | MTR_4g099270 | 43.607 | 305 | 168 | 2 | 20 | 320 | 3 | 307 | 2.22e-78 | 250 |
| MS.gene53499.t1 | MTR_7g086510 | 35.025 | 394 | 249 | 2 | 48 | 434 | 26 | 419 | 1.76e-70 | 239 |
| MS.gene53499.t1 | MTR_6g027630 | 34.434 | 424 | 260 | 5 | 23 | 434 | 7 | 424 | 1.96e-69 | 235 |
| MS.gene53499.t1 | MTR_6g027630 | 34.204 | 421 | 265 | 4 | 23 | 434 | 7 | 424 | 5.14e-69 | 235 |
| MS.gene53499.t1 | MTR_7g007850 | 32.083 | 533 | 342 | 12 | 42 | 559 | 29 | 556 | 4.06e-68 | 231 |
| MS.gene53499.t1 | MTR_6g027680 | 34.236 | 406 | 254 | 4 | 38 | 434 | 26 | 427 | 1.18e-67 | 230 |
| MS.gene53499.t1 | MTR_7g086610 | 33.582 | 402 | 257 | 3 | 40 | 434 | 15 | 413 | 5.86e-67 | 229 |
| MS.gene53499.t1 | MTR_6g027660 | 33.985 | 409 | 251 | 6 | 38 | 434 | 24 | 425 | 2.80e-66 | 228 |
| MS.gene53499.t1 | MTR_7g007850 | 29.196 | 572 | 337 | 10 | 42 | 559 | 29 | 586 | 5.87e-66 | 226 |
| MS.gene53499.t1 | MTR_7g007850 | 35.411 | 401 | 250 | 5 | 42 | 434 | 29 | 428 | 2.66e-65 | 221 |
| MS.gene53499.t1 | MTR_7g007850 | 35.411 | 401 | 250 | 5 | 42 | 434 | 29 | 428 | 6.02e-65 | 222 |
| MS.gene53499.t1 | MTR_6g027650 | 33.763 | 388 | 248 | 3 | 56 | 434 | 30 | 417 | 6.78e-65 | 224 |
| MS.gene53499.t1 | MTR_6g034535 | 46.320 | 231 | 112 | 4 | 349 | 578 | 89 | 308 | 1.10e-63 | 212 |
| MS.gene53499.t1 | MTR_6g034535 | 44.792 | 96 | 28 | 1 | 86 | 181 | 19 | 89 | 3.45e-16 | 80.1 |
| MS.gene53499.t1 | MTR_8g089342 | 75.214 | 117 | 29 | 0 | 10 | 126 | 23 | 139 | 7.61e-58 | 190 |
| MS.gene53499.t1 | MTR_6g027630 | 33.138 | 341 | 215 | 3 | 104 | 434 | 2 | 339 | 2.82e-51 | 185 |
| MS.gene53499.t1 | MTR_6g027670 | 31.646 | 158 | 108 | 0 | 277 | 434 | 1 | 158 | 1.53e-22 | 99.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53499.t1 | AT4G21120 | 65.278 | 576 | 199 | 1 | 6 | 580 | 16 | 591 | 0.0 | 774 |
| MS.gene53499.t1 | AT2G34960 | 58.047 | 553 | 229 | 2 | 8 | 558 | 12 | 563 | 0.0 | 661 |
| MS.gene53499.t1 | AT4G21120 | 62.585 | 441 | 164 | 1 | 141 | 580 | 1 | 441 | 0.0 | 568 |
| MS.gene53499.t1 | AT1G17120 | 50.998 | 551 | 268 | 2 | 9 | 558 | 30 | 579 | 0.0 | 557 |
| MS.gene53499.t1 | AT5G04770 | 40.799 | 576 | 310 | 6 | 18 | 570 | 15 | 582 | 6.95e-146 | 434 |
| MS.gene53499.t1 | AT3G10600 | 41.536 | 573 | 301 | 6 | 15 | 561 | 11 | 575 | 1.12e-141 | 423 |
| MS.gene53499.t1 | AT5G04770 | 44.010 | 384 | 205 | 2 | 18 | 391 | 15 | 398 | 1.23e-107 | 329 |
| MS.gene53499.t1 | AT3G10600 | 39.588 | 437 | 230 | 6 | 151 | 561 | 1 | 429 | 4.62e-99 | 308 |
| MS.gene53499.t1 | AT5G04770 | 38.600 | 443 | 241 | 6 | 151 | 570 | 1 | 435 | 2.37e-97 | 304 |
| MS.gene53499.t1 | AT3G03720 | 32.587 | 402 | 264 | 2 | 40 | 434 | 4 | 405 | 1.97e-69 | 235 |
| MS.gene53499.t1 | AT5G36940 | 32.924 | 407 | 262 | 4 | 38 | 434 | 5 | 410 | 2.81e-68 | 233 |
| MS.gene53499.t1 | AT1G58030 | 31.002 | 429 | 279 | 4 | 13 | 434 | 3 | 421 | 1.81e-65 | 225 |
| MS.gene53499.t1 | AT1G05940 | 30.037 | 546 | 328 | 10 | 52 | 561 | 40 | 567 | 3.67e-63 | 218 |
| MS.gene53499.t1 | AT1G05940 | 29.724 | 508 | 309 | 8 | 52 | 529 | 40 | 529 | 1.03e-59 | 207 |
| MS.gene53499.t1 | AT1G05940 | 31.221 | 426 | 280 | 5 | 52 | 465 | 40 | 464 | 3.16e-59 | 206 |
| MS.gene53499.t1 | AT1G05940 | 28.821 | 458 | 274 | 8 | 139 | 561 | 9 | 449 | 4.03e-43 | 160 |
Find 114 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAAAAGTTTAGGTGATTA+TGG | 0.183327 | 4.2:-12219260 | MS.gene53499:CDS |
| GCTATAAATATATTCCTTCT+TGG | 0.203938 | 4.2:-12216480 | MS.gene53499:CDS |
| TGAATGGTTGGGATCTTATT+TGG | 0.215470 | 4.2:-12219121 | MS.gene53499:CDS |
| AAACTAAATGCAACCGAAAA+TGG | 0.229991 | 4.2:+12217056 | None:intergenic |
| ATTCTATCTTTCAACCTAAA+TGG | 0.233964 | 4.2:+12219218 | None:intergenic |
| CACAATATGAACCCTGATTA+TGG | 0.260743 | 4.2:-12217476 | MS.gene53499:CDS |
| TCAAAGTCTTCTTCATTTGA+TGG | 0.269199 | 4.2:+12219141 | None:intergenic |
| TGCATACTTAAGAGTAGAAT+TGG | 0.276540 | 4.2:-12217636 | MS.gene53499:CDS |
| GTTGCAGAGGGTGGCAAAAT+AGG | 0.283118 | 4.2:+12217529 | None:intergenic |
| TTGATAAAGATTCATATATA+AGG | 0.285317 | 4.2:-12216452 | MS.gene53499:CDS |
| ATACTCCTTGAATATGTTAT+AGG | 0.292518 | 4.2:-12217581 | MS.gene53499:CDS |
| TATGCTTCATTTGCTCCTTT+TGG | 0.292689 | 4.2:-12217290 | MS.gene53499:CDS |
| CATTTATGAAAACACCATTT+AGG | 0.293778 | 4.2:-12219232 | MS.gene53499:CDS |
| GTTGAAGAGAGAAGAGATTC+TGG | 0.301802 | 4.2:+12217391 | None:intergenic |
| GTGCGTCGTTATTATTCAAC+TGG | 0.304117 | 4.2:-12216735 | MS.gene53499:CDS |
| AAGCAAAGAAACCTAAAGTT+TGG | 0.310693 | 4.2:-12216542 | MS.gene53499:CDS |
| GAAGATTCATTCAAAAGTTT+AGG | 0.314300 | 4.2:-12219269 | MS.gene53499:CDS |
| AAAGATTCATATATAAGGTT+TGG | 0.336683 | 4.2:-12216447 | MS.gene53499:CDS |
| ATCGGCGCCGTCGTCGGTTC+CGG | 0.340214 | 4.2:-12219092 | MS.gene53499:CDS |
| ATGAGGGCTATAACAGCAAT+AGG | 0.342880 | 4.2:+12217443 | None:intergenic |
| GACATTCCTATTGGTCTTGT+AGG | 0.349217 | 4.2:-12217167 | MS.gene53499:CDS |
| TTTCGGGGTTGGCGTTGATT+AGG | 0.363441 | 4.2:+12217315 | None:intergenic |
| ATTGCCTTCATCATCATTGT+TGG | 0.370746 | 4.2:-12217338 | MS.gene53499:CDS |
| GATCTTATTTGGTTCGGAAT+CGG | 0.376968 | 4.2:-12219110 | MS.gene53499:CDS |
| AGCAAAGAAACCTAAAGTTT+GGG | 0.379219 | 4.2:-12216541 | MS.gene53499:CDS |
| AAGATTCATATATAAGGTTT+GGG | 0.381982 | 4.2:-12216446 | MS.gene53499:CDS |
| GGGTCAAGATGACCATAATC+AGG | 0.382582 | 4.2:+12217464 | None:intergenic |
| ATAAGGTTTGGGATGTGGTC+AGG | 0.401357 | 4.2:-12216435 | MS.gene53499:CDS |
| TGTTGCATTGGGAGCATTGA+AGG | 0.418790 | 4.2:-12217006 | MS.gene53499:CDS |
| GCTCTTGTTCATGAGAAAAC+CGG | 0.418847 | 4.2:-12216894 | MS.gene53499:CDS |
| CAAGGGTGGCGATGGCTATG+AGG | 0.419014 | 4.2:+12217426 | None:intergenic |
| GGTTGGGATCTTATTTGGTT+CGG | 0.419604 | 4.2:-12219116 | MS.gene53499:CDS |
| TAAGTGTTGAAATCGACAAT+AGG | 0.420519 | 4.2:+12216790 | None:intergenic |
| GGCTAAATACATTGTTGCAT+TGG | 0.420648 | 4.2:-12217018 | MS.gene53499:CDS |
| GGTTGAAAGCAGACATACTA+TGG | 0.423044 | 4.2:-12216352 | MS.gene53499:CDS |
| CTTTGATGCAGTGTCAACTA+TGG | 0.425840 | 4.2:-12217216 | MS.gene53499:CDS |
| GCTAAATACATTGTTGCATT+GGG | 0.433060 | 4.2:-12217017 | MS.gene53499:CDS |
| TGAAGAAGACTTTGAATGGT+TGG | 0.433470 | 4.2:-12219133 | MS.gene53499:CDS |
| ATTGATCCTACAAGACCAAT+AGG | 0.439236 | 4.2:+12217161 | None:intergenic |
| CATATATAAGGTTTGGGATG+TGG | 0.442523 | 4.2:-12216440 | MS.gene53499:CDS |
| CAAATGAAGAAGACTTTGAA+TGG | 0.443211 | 4.2:-12219137 | MS.gene53499:CDS |
| TATTGGTCTTGTAGGATCAA+TGG | 0.444727 | 4.2:-12217159 | MS.gene53499:CDS |
| GAAGAAGACTTTGAATGGTT+GGG | 0.451214 | 4.2:-12219132 | MS.gene53499:CDS |
| AGTAGAATTGGGAGACTTTG+TGG | 0.458556 | 4.2:-12217624 | MS.gene53499:CDS |
| CTGCTCCTATAACATATTCA+AGG | 0.458801 | 4.2:+12217576 | None:intergenic |
| GTACTCACATGATGCCTCCT+TGG | 0.466399 | 4.2:-12216920 | MS.gene53499:CDS |
| TTTGTGGCCTTCATAGCTGC+TGG | 0.472452 | 4.2:-12217608 | MS.gene53499:CDS |
| CTCTTGTTCATGAGAAAACC+GGG | 0.472524 | 4.2:-12216893 | MS.gene53499:CDS |
| AAATGGTGCATTGACATCAA+TGG | 0.475079 | 4.2:+12217073 | None:intergenic |
| CCTGGCAGAGACATTCCTAT+TGG | 0.477268 | 4.2:-12217176 | MS.gene53499:CDS |
| GCATACTTAAGAGTAGAATT+GGG | 0.485267 | 4.2:-12217635 | MS.gene53499:CDS |
| TATGTTTCCAGCAGCTATGA+AGG | 0.486802 | 4.2:+12217601 | None:intergenic |
| TTCGGAATCGGCGCCGTCGT+CGG | 0.489934 | 4.2:-12219098 | MS.gene53499:CDS |
| TGAGTGATGGTTGGATTGGA+TGG | 0.492403 | 4.2:-12216623 | MS.gene53499:CDS |
| CCAATAGGAATGTCTCTGCC+AGG | 0.497538 | 4.2:+12217176 | None:intergenic |
| CAGCAGCCGTAGCTCGATCA+TGG | 0.497728 | 4.2:-12217556 | MS.gene53499:CDS |
| ACTTTAGGTTTCTTTGCTTG+TGG | 0.499703 | 4.2:+12216546 | None:intergenic |
| CTTGAAGCTCGTGAGGAGGC+TGG | 0.502388 | 4.2:-12219050 | MS.gene53499:CDS |
| TAAGGTTTGGGATGTGGTCA+GGG | 0.502438 | 4.2:-12216434 | MS.gene53499:CDS |
| ACTATTATACGAAAATCGTT+AGG | 0.506095 | 4.2:+12217500 | None:intergenic |
| CATAATCAGGGTTCATATTG+TGG | 0.510899 | 4.2:+12217477 | None:intergenic |
| GAAGGTAACCAAGGAACTAA+AGG | 0.517947 | 4.2:+12216513 | None:intergenic |
| AAAAGATTACATGGAGATTG+TGG | 0.522533 | 4.2:-12219183 | MS.gene53499:CDS |
| AAAACACCTCTGGTACCAAA+AGG | 0.527195 | 4.2:+12217275 | None:intergenic |
| TGTAGCATTCAAAGGTGTCC+CGG | 0.529346 | 4.2:+12216875 | None:intergenic |
| TACACGATCAAAAGATTACA+TGG | 0.530851 | 4.2:-12219192 | MS.gene53499:CDS |
| ATAGAGCAATGAGTGATGGT+TGG | 0.531056 | 4.2:-12216632 | MS.gene53499:CDS |
| TTCTGGTGCTTAAGACTGCA+AGG | 0.531934 | 4.2:+12217408 | None:intergenic |
| AACAAGAAGGCAAATACCTC+CGG | 0.540070 | 4.2:+12216569 | None:intergenic |
| AGAGATTAACAATGTTGAAG+AGG | 0.543356 | 4.2:-12216313 | MS.gene53499:CDS |
| TTTGAATGCTACAATTGCAA+TGG | 0.543834 | 4.2:-12216865 | MS.gene53499:CDS |
| GCAATGAGTGATGGTTGGAT+TGG | 0.544767 | 4.2:-12216627 | MS.gene53499:CDS |
| GAAAATGCCGGAACCGACGA+CGG | 0.546498 | 4.2:+12219085 | None:intergenic |
| GCTGTGGAAATTCCTGTCGC+AGG | 0.549047 | 4.2:-12218954 | MS.gene53499:intron |
| TAAGACTGCAAGGGTGGCGA+TGG | 0.550212 | 4.2:+12217418 | None:intergenic |
| TGCGTCGTTATTATTCAACT+GGG | 0.550353 | 4.2:-12216734 | MS.gene53499:CDS |
| TTGATTATTGGATCTTCATG+TGG | 0.550908 | 4.2:-12216666 | MS.gene53499:CDS |
| GACAACATTAACCAACAAAA+CGG | 0.553927 | 4.2:+12216974 | None:intergenic |
| ATTGCAATTGTAGCATTCAA+AGG | 0.554677 | 4.2:+12216867 | None:intergenic |
| CAGTGTAATAAACCTGCGAC+AGG | 0.557065 | 4.2:+12218942 | None:intergenic |
| GCATACGACAAAACAACGGC+AGG | 0.559328 | 4.2:+12219026 | None:intergenic |
| CACGGGTCTTGAAGCTCGTG+AGG | 0.559748 | 4.2:-12219057 | MS.gene53499:CDS |
| GTTTATAGAGCAATGAGTGA+TGG | 0.561915 | 4.2:-12216636 | MS.gene53499:CDS |
| TGCTTCTTATGATGCATCAA+AGG | 0.567964 | 4.2:-12216376 | MS.gene53499:CDS |
| TGCAGTGTCAACTATGGCCG+AGG | 0.568528 | 4.2:-12217210 | MS.gene53499:CDS |
| GTTGCATTGGGAGCATTGAA+GGG | 0.572087 | 4.2:-12217005 | MS.gene53499:CDS |
| AAGGGTGGCGATGGCTATGA+GGG | 0.572955 | 4.2:+12217427 | None:intergenic |
| CTTTATCAATAGATCCAAGA+AGG | 0.573540 | 4.2:+12216466 | None:intergenic |
| TAGGCCAACAATGATGATGA+AGG | 0.578906 | 4.2:+12217334 | None:intergenic |
| TGAGGGCTATAACAGCAATA+GGG | 0.590082 | 4.2:+12217444 | None:intergenic |
| TCTTTGCTTGTGGAACAAGA+AGG | 0.591771 | 4.2:+12216556 | None:intergenic |
| AATGGTTACAATAACTTCCG+TGG | 0.596952 | 4.2:-12216847 | MS.gene53499:CDS |
| GCAGAGGGTGGCAAAATAGG+AGG | 0.598124 | 4.2:+12217532 | None:intergenic |
| GCAAAGAAACCTAAAGTTTG+GGG | 0.603737 | 4.2:-12216540 | MS.gene53499:CDS |
| GGAGGTCCATGATCGAGCTA+CGG | 0.611878 | 4.2:+12217550 | None:intergenic |
| GGTCAAGATGACCATAATCA+GGG | 0.614215 | 4.2:+12217465 | None:intergenic |
| GGGTCTTGAAGCTCGTGAGG+AGG | 0.615839 | 4.2:-12219054 | MS.gene53499:CDS |
| ACCCGTGAGAACGAAAATGC+CGG | 0.617637 | 4.2:+12219073 | None:intergenic |
| CTGTTACACTGAGTTCGCTG+TGG | 0.620747 | 4.2:-12218970 | MS.gene53499:CDS |
| CAATAGGAATGTCTCTGCCA+GGG | 0.621672 | 4.2:+12217177 | None:intergenic |
| TTCTTATGATGCATCAAAGG+AGG | 0.629051 | 4.2:-12216373 | MS.gene53499:CDS |
| AGCAAAGAAAAGAACAGCTG+AGG | 0.637960 | 4.2:+12217247 | None:intergenic |
| GAGTGATGGTTGGATTGGAT+GGG | 0.641500 | 4.2:-12216622 | MS.gene53499:CDS |
| GGTGCTTAAGACTGCAAGGG+TGG | 0.641563 | 4.2:+12217412 | None:intergenic |
| TCTGGTGCTTAAGACTGCAA+GGG | 0.651168 | 4.2:+12217409 | None:intergenic |
| CAAAGAAACCTAAAGTTTGG+GGG | 0.656196 | 4.2:-12216539 | MS.gene53499:CDS |
| GACAGCATACGACAAAACAA+CGG | 0.658241 | 4.2:+12219022 | None:intergenic |
| CCGGTTCCTAAAAGCCACAA+TGG | 0.660149 | 4.2:+12216588 | None:intergenic |
| AAAGAAACCTAAAGTTTGGG+GGG | 0.664460 | 4.2:-12216538 | MS.gene53499:CDS |
| AATGTGAGTTAAATAACGTG+AGG | 0.693226 | 4.2:+12216947 | None:intergenic |
| GCGTCGTTATTATTCAACTG+GGG | 0.713208 | 4.2:-12216733 | MS.gene53499:CDS |
| TCATGAACAAGAGCAAACCA+AGG | 0.716329 | 4.2:+12216903 | None:intergenic |
| TGAACAAGAGCAAACCAAGG+AGG | 0.732183 | 4.2:+12216906 | None:intergenic |
| GAGATGGGTACAGAAAACAG+TGG | 0.787629 | 4.2:-12219314 | MS.gene53499:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAATTTCCTAAATAA+AGG | + | chr4.2:12216758-12216777 | None:intergenic | 10.0% |
| !!! | ATTTTGTGATTTATTTTTTA+AGG | - | chr4.2:12216773-12216792 | MS.gene53499:CDS | 10.0% |
| !!! | TTAATTTTTTTATAGTGTTA+TGG | - | chr4.2:12217748-12217767 | MS.gene53499:intron | 10.0% |
| !! | TACAAAATGTATAGAAAAAT+AGG | + | chr4.2:12217677-12217696 | None:intergenic | 15.0% |
| !! | TTGATAAAGATTCATATATA+AGG | - | chr4.2:12219158-12219177 | MS.gene53499:CDS | 15.0% |
| !!! | TATTTTTTATTGATATAGTC+AGG | + | chr4.2:12217330-12217349 | None:intergenic | 15.0% |
| !!! | TGAATATTATACCTTTATTT+AGG | - | chr4.2:12216744-12216763 | MS.gene53499:CDS | 15.0% |
| !!! | TGAGTAATTAATCATTTTTT+TGG | + | chr4.2:12217182-12217201 | None:intergenic | 15.0% |
| !! | AAAGATTCATATATAAGGTT+TGG | - | chr4.2:12219163-12219182 | MS.gene53499:CDS | 20.0% |
| !! | AAGATTCATATATAAGGTTT+GGG | - | chr4.2:12219164-12219183 | MS.gene53499:CDS | 20.0% |
| !! | ATCAACTATTATGTAGAAAA+TGG | + | chr4.2:12217872-12217891 | None:intergenic | 20.0% |
| !! | ATTAATTACTCATGAATTGA+AGG | - | chr4.2:12217190-12217209 | MS.gene53499:CDS | 20.0% |
| !! | TCAACTATTATGTAGAAAAT+GGG | + | chr4.2:12217871-12217890 | None:intergenic | 20.0% |
| !! | TGTATTTCTTAAAGTTAGAA+GGG | - | chr4.2:12217693-12217712 | MS.gene53499:intron | 20.0% |
| !! | TTGTATTTCTTAAAGTTAGA+AGG | - | chr4.2:12217692-12217711 | MS.gene53499:intron | 20.0% |
| !! | TTTAATTGATGTTATTCGTA+CGG | + | chr4.2:12217432-12217451 | None:intergenic | 20.0% |
| !! | TTTATAGCAATAGAAAAAGA+AGG | + | chr4.2:12219118-12219137 | None:intergenic | 20.0% |
| !! | TTTCTACATAATAGTTGATT+TGG | - | chr4.2:12217873-12217892 | MS.gene53499:intron | 20.0% |
| !!! | ATTAATCATTTTTTTGGTAG+TGG | + | chr4.2:12217176-12217195 | None:intergenic | 20.0% |
| !!! | ATTTAACTTTTAAGGTAAGA+GGG | + | chr4.2:12217821-12217840 | None:intergenic | 20.0% |
| !!! | TGTTTTAGAGTATGTTTTTA+AGG | + | chr4.2:12217496-12217515 | None:intergenic | 20.0% |
| !!! | TTAAAAGTATGTTTGAATAG+AGG | - | chr4.2:12216881-12216900 | MS.gene53499:CDS | 20.0% |
| !!! | TTGATTTACTATTTTCTCAT+TGG | - | chr4.2:12219205-12219224 | MS.gene53499:CDS | 20.0% |
| !!! | TTTTTATAGTGTTATGGTTA+TGG | - | chr4.2:12217754-12217773 | MS.gene53499:intron | 20.0% |
| ! | AAGTATAAACATGACTTTGT+TGG | + | chr4.2:12217354-12217373 | None:intergenic | 25.0% |
| ! | ACTATTATACGAAAATCGTT+AGG | + | chr4.2:12218113-12218132 | None:intergenic | 25.0% |
| ! | ATACTCCTTGAATATGTTAT+AGG | - | chr4.2:12218029-12218048 | MS.gene53499:intron | 25.0% |
| ! | ATTCTATCTTTCAACCTAAA+TGG | + | chr4.2:12216395-12216414 | None:intergenic | 25.0% |
| ! | CATTTATGAAAACACCATTT+AGG | - | chr4.2:12216378-12216397 | MS.gene53499:CDS | 25.0% |
| ! | GAAGATTCATTCAAAAGTTT+AGG | - | chr4.2:12216341-12216360 | MS.gene53499:CDS | 25.0% |
| ! | GCTATAAATATATTCCTTCT+TGG | - | chr4.2:12219130-12219149 | MS.gene53499:CDS | 25.0% |
| ! | TGCATAAAATATGCAAAGTT+CGG | - | chr4.2:12217136-12217155 | MS.gene53499:CDS | 25.0% |
| ! | TTCAAAAGTTTAGGTGATTA+TGG | - | chr4.2:12216350-12216369 | MS.gene53499:CDS | 25.0% |
| !! | AAACTTTTGAATGAATCTTC+TGG | + | chr4.2:12216341-12216360 | None:intergenic | 25.0% |
| !! | AACTTTTGAATGAATCTTCT+GGG | + | chr4.2:12216340-12216359 | None:intergenic | 25.0% |
| !! | TTTGAATAGAGGATTTTGAA+GGG | - | chr4.2:12216892-12216911 | MS.gene53499:CDS | 25.0% |
| !! | TTTTGTAAACACAACAATCA+TGG | - | chr4.2:12217245-12217264 | MS.gene53499:CDS | 25.0% |
| !! | TTTTTATTGATATAGTCAGG+CGG | + | chr4.2:12217327-12217346 | None:intergenic | 25.0% |
| !!! | GATTTAACTTTTAAGGTAAG+AGG | + | chr4.2:12217822-12217841 | None:intergenic | 25.0% |
| !!! | TATGTTTTTAAGGTGAGTTT+TGG | + | chr4.2:12217486-12217505 | None:intergenic | 25.0% |
| !!! | TGCATTGGATTTAACTTTTA+AGG | + | chr4.2:12217829-12217848 | None:intergenic | 25.0% |
| AAAAGATTACATGGAGATTG+TGG | - | chr4.2:12216427-12216446 | MS.gene53499:CDS | 30.0% | |
| AAACTAAATGCAACCGAAAA+TGG | + | chr4.2:12218557-12218576 | None:intergenic | 30.0% | |
| AAGCAAAGAAACCTAAAGTT+TGG | - | chr4.2:12219068-12219087 | MS.gene53499:CDS | 30.0% | |
| AATGTGAGTTAAATAACGTG+AGG | + | chr4.2:12218666-12218685 | None:intergenic | 30.0% | |
| AGAGATTAACAATGTTGAAG+AGG | - | chr4.2:12219297-12219316 | MS.gene53499:CDS | 30.0% | |
| AGCAAAGAAACCTAAAGTTT+GGG | - | chr4.2:12219069-12219088 | MS.gene53499:CDS | 30.0% | |
| ATACAGTATATAGGTAGCAA+AGG | - | chr4.2:12217716-12217735 | MS.gene53499:intron | 30.0% | |
| ATAGAAAAAGAAGGTAACCA+AGG | + | chr4.2:12219109-12219128 | None:intergenic | 30.0% | |
| ATGATATGCAATCACAAGTA+AGG | + | chr4.2:12217636-12217655 | None:intergenic | 30.0% | |
| ATTGCAATTGTAGCATTCAA+AGG | + | chr4.2:12218746-12218765 | None:intergenic | 30.0% | |
| CAAATGAAGAAGACTTTGAA+TGG | - | chr4.2:12216473-12216492 | MS.gene53499:CDS | 30.0% | |
| CATAAAATATGCAAAGTTCG+GGG | - | chr4.2:12217138-12217157 | MS.gene53499:CDS | 30.0% | |
| CGGTATATCTGGATATATTT+AGG | + | chr4.2:12217412-12217431 | None:intergenic | 30.0% | |
| CTTTATCAATAGATCCAAGA+AGG | + | chr4.2:12219147-12219166 | None:intergenic | 30.0% | |
| GACAACATTAACCAACAAAA+CGG | + | chr4.2:12218639-12218658 | None:intergenic | 30.0% | |
| GATGCATATAGTTCATTGTA+AGG | + | chr4.2:12217390-12217409 | None:intergenic | 30.0% | |
| GCATAAAATATGCAAAGTTC+GGG | - | chr4.2:12217137-12217156 | MS.gene53499:CDS | 30.0% | |
| GCATACTTAAGAGTAGAATT+GGG | - | chr4.2:12217975-12217994 | MS.gene53499:intron | 30.0% | |
| GCTAAATACATTGTTGCATT+GGG | - | chr4.2:12218593-12218612 | MS.gene53499:intron | 30.0% | |
| GTCATGTTTATACTTAAAGC+TGG | - | chr4.2:12217359-12217378 | MS.gene53499:CDS | 30.0% | |
| GTGTTTACAAAAAGACTTAG+CGG | + | chr4.2:12217237-12217256 | None:intergenic | 30.0% | |
| TACACGATCAAAAGATTACA+TGG | - | chr4.2:12216418-12216437 | MS.gene53499:CDS | 30.0% | |
| TCAAAGTCTTCTTCATTTGA+TGG | + | chr4.2:12216472-12216491 | None:intergenic | 30.0% | |
| TCTTGTGATTAAGTATGCAT+TGG | + | chr4.2:12217844-12217863 | None:intergenic | 30.0% | |
| TGAGACTAATTGAGTTATGT+GGG | - | chr4.2:12217922-12217941 | MS.gene53499:intron | 30.0% | |
| TGCATACTTAAGAGTAGAAT+TGG | - | chr4.2:12217974-12217993 | MS.gene53499:intron | 30.0% | |
| TTAGAAGGGATACAGTATAT+AGG | - | chr4.2:12217707-12217726 | MS.gene53499:intron | 30.0% | |
| TTGAGACTAATTGAGTTATG+TGG | - | chr4.2:12217921-12217940 | MS.gene53499:intron | 30.0% | |
| TTGATTATTGGATCTTCATG+TGG | - | chr4.2:12218944-12218963 | MS.gene53499:intron | 30.0% | |
| TTTGAATGCTACAATTGCAA+TGG | - | chr4.2:12218745-12218764 | MS.gene53499:intron | 30.0% | |
| ! | AGCAAATGAAGCATAGTTTT+CGG | + | chr4.2:12218315-12218334 | None:intergenic | 30.0% |
| ! | ATTTTCGTTCTTGTAGCAAT+TGG | - | chr4.2:12218845-12218864 | MS.gene53499:intron | 30.0% |
| ! | GTTCTTTTCTTTGCTTACAT+AGG | - | chr4.2:12218371-12218390 | MS.gene53499:intron | 30.0% |
| ! | GTTTGAATAGAGGATTTTGA+AGG | - | chr4.2:12216891-12216910 | MS.gene53499:CDS | 30.0% |
| ! | TTTTCGTTCTTGTAGCAATT+GGG | - | chr4.2:12218846-12218865 | MS.gene53499:intron | 30.0% |
| !! | GTTATTGTTTGTTATCAGGT+GGG | - | chr4.2:12217946-12217965 | MS.gene53499:intron | 30.0% |
| !! | GTTTTGTTGGTTAATGTTGT+CGG | - | chr4.2:12218638-12218657 | MS.gene53499:intron | 30.0% |
| !! | TAAGTGTTGAAATCGACAAT+AGG | + | chr4.2:12218823-12218842 | None:intergenic | 30.0% |
| !! | TGTTATTGTTTGTTATCAGG+TGG | - | chr4.2:12217945-12217964 | MS.gene53499:intron | 30.0% |
| !!! | GTATGCGTTGTTTTGATTAT+TGG | - | chr4.2:12218932-12218951 | MS.gene53499:intron | 30.0% |
| !!! | TGCATTTAGTTTTGTTGGAT+GGG | - | chr4.2:12218565-12218584 | MS.gene53499:intron | 30.0% |
| !!! | TTGCATTTAGTTTTGTTGGA+TGG | - | chr4.2:12218564-12218583 | MS.gene53499:intron | 30.0% |
| !!! | TTTTTAAGGTGAGTTTTGGA+GGG | + | chr4.2:12217482-12217501 | None:intergenic | 30.0% |
| AAAGAAACCTAAAGTTTGGG+GGG | - | chr4.2:12219072-12219091 | MS.gene53499:CDS | 35.0% | |
| AATGGTTACAATAACTTCCG+TGG | - | chr4.2:12218763-12218782 | MS.gene53499:intron | 35.0% | |
| ACTCATGAATTGAAGGTAAG+CGG | - | chr4.2:12217197-12217216 | MS.gene53499:CDS | 35.0% | |
| ATCAGTGAAAAATGCAACCA+CGG | + | chr4.2:12218783-12218802 | None:intergenic | 35.0% | |
| ATTGATCCTACAAGACCAAT+AGG | + | chr4.2:12218452-12218471 | None:intergenic | 35.0% | |
| ATTGCCTTCATCATCATTGT+TGG | - | chr4.2:12218272-12218291 | MS.gene53499:intron | 35.0% | |
| CAAAGAAACCTAAAGTTTGG+GGG | - | chr4.2:12219071-12219090 | MS.gene53499:CDS | 35.0% | |
| CACAATATGAACCCTGATTA+TGG | - | chr4.2:12218134-12218153 | MS.gene53499:intron | 35.0% | |
| CATAATCAGGGTTCATATTG+TGG | + | chr4.2:12218136-12218155 | None:intergenic | 35.0% | |
| CTGCTCCTATAACATATTCA+AGG | + | chr4.2:12218037-12218056 | None:intergenic | 35.0% | |
| GAAGAAGACTTTGAATGGTT+GGG | - | chr4.2:12216478-12216497 | MS.gene53499:CDS | 35.0% | |
| GCAAAGAAACCTAAAGTTTG+GGG | - | chr4.2:12219070-12219089 | MS.gene53499:CDS | 35.0% | |
| GGCTAAATACATTGTTGCAT+TGG | - | chr4.2:12218592-12218611 | MS.gene53499:intron | 35.0% | |
| GTTTATAGAGCAATGAGTGA+TGG | - | chr4.2:12218974-12218993 | MS.gene53499:CDS | 35.0% | |
| TGAAGAAGACTTTGAATGGT+TGG | - | chr4.2:12216477-12216496 | MS.gene53499:CDS | 35.0% | |
| TGAATGGTTGGGATCTTATT+TGG | - | chr4.2:12216489-12216508 | MS.gene53499:CDS | 35.0% | |
| TGCGTCGTTATTATTCAACT+GGG | - | chr4.2:12218876-12218895 | MS.gene53499:intron | 35.0% | |
| TGCTTCTTATGATGCATCAA+AGG | - | chr4.2:12219234-12219253 | MS.gene53499:CDS | 35.0% | |
| TGTTATTCGTACGGTATATC+TGG | + | chr4.2:12217423-12217442 | None:intergenic | 35.0% | |
| TTCTTATGATGCATCAAAGG+AGG | - | chr4.2:12219237-12219256 | MS.gene53499:CDS | 35.0% | |
| ! | AAATGGTGCATTGACATCAA+TGG | + | chr4.2:12218540-12218559 | None:intergenic | 35.0% |
| ! | ACTTTAGGTTTCTTTGCTTG+TGG | + | chr4.2:12219067-12219086 | None:intergenic | 35.0% |
| ! | CAAATGAAGCATAGTTTTCG+GGG | + | chr4.2:12218313-12218332 | None:intergenic | 35.0% |
| ! | CATATATAAGGTTTGGGATG+TGG | - | chr4.2:12219170-12219189 | MS.gene53499:CDS | 35.0% |
| ! | GCAAATGAAGCATAGTTTTC+GGG | + | chr4.2:12218314-12218333 | None:intergenic | 35.0% |
| ! | GTTAGGATTTTTGTTGCAGA+GGG | + | chr4.2:12218096-12218115 | None:intergenic | 35.0% |
| ! | TATGCTTCATTTGCTCCTTT+TGG | - | chr4.2:12218320-12218339 | MS.gene53499:intron | 35.0% |
| ! | TGATGTCAATGCACCATTTT+CGG | - | chr4.2:12218541-12218560 | MS.gene53499:intron | 35.0% |
| !! | GATCTTATTTGGTTCGGAAT+CGG | - | chr4.2:12216500-12216519 | MS.gene53499:CDS | 35.0% |
| !! | GGGTGTTATTGTTTGTTATC+AGG | - | chr4.2:12217942-12217961 | MS.gene53499:intron | 35.0% |
| !! | TATTGGTCTTGTAGGATCAA+TGG | - | chr4.2:12218451-12218470 | MS.gene53499:intron | 35.0% |
| !!! | ATCATTTTTTTGGTAGTGGC+CGG | + | chr4.2:12217172-12217191 | None:intergenic | 35.0% |
| !!! | GCATTTAGTTTTGTTGGATG+GGG | - | chr4.2:12218566-12218585 | MS.gene53499:intron | 35.0% |
| !!! | GTTTTTAAGGTGAGTTTTGG+AGG | + | chr4.2:12217483-12217502 | None:intergenic | 35.0% |
| !!! | TCGGTTGCATTTAGTTTTGT+TGG | - | chr4.2:12218560-12218579 | MS.gene53499:intron | 35.0% |
| !!! | TGGTTTTGTAGTTCTGCATA+AGG | + | chr4.2:12218520-12218539 | None:intergenic | 35.0% |
| AAAACACCTCTGGTACCAAA+AGG | + | chr4.2:12218338-12218357 | None:intergenic | 40.0% | |
| AACAAGAAGGCAAATACCTC+CGG | + | chr4.2:12219044-12219063 | None:intergenic | 40.0% | |
| AGCAAAGAAAAGAACAGCTG+AGG | + | chr4.2:12218366-12218385 | None:intergenic | 40.0% | |
| AGTAGAATTGGGAGACTTTG+TGG | - | chr4.2:12217986-12218005 | MS.gene53499:intron | 40.0% | |
| ATAGAGCAATGAGTGATGGT+TGG | - | chr4.2:12218978-12218997 | MS.gene53499:CDS | 40.0% | |
| ATGAGGGCTATAACAGCAAT+AGG | + | chr4.2:12218170-12218189 | None:intergenic | 40.0% | |
| CTCATGAATTGAAGGTAAGC+GGG | - | chr4.2:12217198-12217217 | MS.gene53499:CDS | 40.0% | |
| CTCTTGTTCATGAGAAAACC+GGG | - | chr4.2:12218717-12218736 | MS.gene53499:intron | 40.0% | |
| CTTTGATGCAGTGTCAACTA+TGG | - | chr4.2:12218394-12218413 | MS.gene53499:intron | 40.0% | |
| GAAGGTAACCAAGGAACTAA+AGG | + | chr4.2:12219100-12219119 | None:intergenic | 40.0% | |
| GACAGCATACGACAAAACAA+CGG | + | chr4.2:12216591-12216610 | None:intergenic | 40.0% | |
| GCGTCGTTATTATTCAACTG+GGG | - | chr4.2:12218877-12218896 | MS.gene53499:intron | 40.0% | |
| GCTCTTGTTCATGAGAAAAC+CGG | - | chr4.2:12218716-12218735 | MS.gene53499:intron | 40.0% | |
| GGTCAAGATGACCATAATCA+GGG | + | chr4.2:12218148-12218167 | None:intergenic | 40.0% | |
| GGTTGAAAGCAGACATACTA+TGG | - | chr4.2:12219258-12219277 | MS.gene53499:CDS | 40.0% | |
| GTGCGTCGTTATTATTCAAC+TGG | - | chr4.2:12218875-12218894 | MS.gene53499:intron | 40.0% | |
| GTTGAAGAGAGAAGAGATTC+TGG | + | chr4.2:12218222-12218241 | None:intergenic | 40.0% | |
| TATGTTTCCAGCAGCTATGA+AGG | + | chr4.2:12218012-12218031 | None:intergenic | 40.0% | |
| TCATGAACAAGAGCAAACCA+AGG | + | chr4.2:12218710-12218729 | None:intergenic | 40.0% | |
| TCATGAATTGAAGGTAAGCG+GGG | - | chr4.2:12217199-12217218 | MS.gene53499:CDS | 40.0% | |
| TCTTTGCTTGTGGAACAAGA+AGG | + | chr4.2:12219057-12219076 | None:intergenic | 40.0% | |
| TGAGGGCTATAACAGCAATA+GGG | + | chr4.2:12218169-12218188 | None:intergenic | 40.0% | |
| ! | CGTTAGGATTTTTGTTGCAG+AGG | + | chr4.2:12218097-12218116 | None:intergenic | 40.0% |
| ! | GGTTGGGATCTTATTTGGTT+CGG | - | chr4.2:12216494-12216513 | MS.gene53499:CDS | 40.0% |
| ! | TAGGCCAACAATGATGATGA+AGG | + | chr4.2:12218279-12218298 | None:intergenic | 40.0% |
| !! | GAATAGAGGATTTTGAAGGG+TGG | - | chr4.2:12216895-12216914 | MS.gene53499:CDS | 40.0% |
| !! | GACATTCCTATTGGTCTTGT+AGG | - | chr4.2:12218443-12218462 | MS.gene53499:intron | 40.0% |
| !! | TGAGGCTTTAAAAACACCTC+TGG | + | chr4.2:12218348-12218367 | None:intergenic | 40.0% |
| !!! | TAGTTTTGTTGGATGGGGAT+GGG | - | chr4.2:12218571-12218590 | MS.gene53499:intron | 40.0% |
| !!! | TCATTTTTTTGGTAGTGGCC+GGG | + | chr4.2:12217171-12217190 | None:intergenic | 40.0% |
| !!! | TTAGTTTTGTTGGATGGGGA+TGG | - | chr4.2:12218570-12218589 | MS.gene53499:intron | 40.0% |
| AAAACCAAGACCGCCAGAAA+GGG | + | chr4.2:12217303-12217322 | None:intergenic | 45.0% | |
| CAATAGGAATGTCTCTGCCA+GGG | + | chr4.2:12218436-12218455 | None:intergenic | 45.0% | |
| CAGTGTAATAAACCTGCGAC+AGG | + | chr4.2:12216671-12216690 | None:intergenic | 45.0% | |
| GCAATGAGTGATGGTTGGAT+TGG | - | chr4.2:12218983-12219002 | MS.gene53499:CDS | 45.0% | |
| GGGTCAAGATGACCATAATC+AGG | + | chr4.2:12218149-12218168 | None:intergenic | 45.0% | |
| TCTGGTGCTTAAGACTGCAA+GGG | + | chr4.2:12218204-12218223 | None:intergenic | 45.0% | |
| TGAACAAGAGCAAACCAAGG+AGG | + | chr4.2:12218707-12218726 | None:intergenic | 45.0% | |
| TGAGCTTAGCTCAGTTGGTT+GGG | - | chr4.2:12217109-12217128 | MS.gene53499:CDS | 45.0% | |
| TTCTGGTGCTTAAGACTGCA+AGG | + | chr4.2:12218205-12218224 | None:intergenic | 45.0% | |
| ! | AGGATTTTTGTTGCAGAGGG+TGG | + | chr4.2:12218093-12218112 | None:intergenic | 45.0% |
| ! | ATAAGGTTTGGGATGTGGTC+AGG | - | chr4.2:12219175-12219194 | MS.gene53499:CDS | 45.0% |
| ! | GAGTGATGGTTGGATTGGAT+GGG | - | chr4.2:12218988-12219007 | MS.gene53499:CDS | 45.0% |
| ! | GTTTTGTCGTATGCTGTCTC+TGG | - | chr4.2:12216593-12216612 | MS.gene53499:CDS | 45.0% |
| ! | TAAGGTTTGGGATGTGGTCA+GGG | - | chr4.2:12219176-12219195 | MS.gene53499:CDS | 45.0% |
| ! | TCAGCACCATTGTGGCTTTT+AGG | - | chr4.2:12219016-12219035 | MS.gene53499:CDS | 45.0% |
| ! | TGAGTGATGGTTGGATTGGA+TGG | - | chr4.2:12218987-12219006 | MS.gene53499:CDS | 45.0% |
| ! | TTCCGGCATTTTCGTTCTCA+CGG | - | chr4.2:12216535-12216554 | MS.gene53499:CDS | 45.0% |
| ! | TTTGCTCCTTTTGGTACCAG+AGG | - | chr4.2:12218329-12218348 | MS.gene53499:intron | 45.0% |
| !! | AAAGGTACCCCCCAAACTTT+AGG | + | chr4.2:12219082-12219101 | None:intergenic | 45.0% |
| !! | CCATTGTGGCTTTTAGGAAC+CGG | - | chr4.2:12219022-12219041 | MS.gene53499:CDS | 45.0% |
| !! | GTTGCATTGGGAGCATTGAA+GGG | - | chr4.2:12218605-12218624 | MS.gene53499:intron | 45.0% |
| !! | TGAAGCATAGTTTTCGGGGT+TGG | + | chr4.2:12218309-12218328 | None:intergenic | 45.0% |
| !! | TGTAGCATTCAAAGGTGTCC+CGG | + | chr4.2:12218738-12218757 | None:intergenic | 45.0% |
| !! | TGTTGCATTGGGAGCATTGA+AGG | - | chr4.2:12218604-12218623 | MS.gene53499:intron | 45.0% |
| !!! | CATTTTTTTGGTAGTGGCCG+GGG | + | chr4.2:12217170-12217189 | None:intergenic | 45.0% |
| !!! | GCCAGGGTTTTTAGTTTCCT+CGG | + | chr4.2:12218420-12218439 | None:intergenic | 45.0% |
| !!! | TATAAAATAATTTACATTTT+TGG | - | chr4.2:12217590-12217609 | MS.gene53499:CDS | 5.0% |
| AAACCAAGACCGCCAGAAAG+GGG | + | chr4.2:12217302-12217321 | None:intergenic | 50.0% | |
| AAAGTTCGGGGTTCAAACCC+CGG | - | chr4.2:12217150-12217169 | MS.gene53499:CDS | 50.0% | |
| ACCCGTGAGAACGAAAATGC+CGG | + | chr4.2:12216540-12216559 | None:intergenic | 50.0% | |
| CAAAACCAAGACCGCCAGAA+AGG | + | chr4.2:12217304-12217323 | None:intergenic | 50.0% | |
| CCAATAGGAATGTCTCTGCC+AGG | + | chr4.2:12218437-12218456 | None:intergenic | 50.0% | |
| CCGGTTCCTAAAAGCCACAA+TGG | + | chr4.2:12219025-12219044 | None:intergenic | 50.0% | |
| CCTGGCAGAGACATTCCTAT+TGG | - | chr4.2:12218434-12218453 | MS.gene53499:intron | 50.0% | |
| CTGTTACACTGAGTTCGCTG+TGG | - | chr4.2:12216640-12216659 | MS.gene53499:CDS | 50.0% | |
| GCATACGACAAAACAACGGC+AGG | + | chr4.2:12216587-12216606 | None:intergenic | 50.0% | |
| GCCGAGGAAACTAAAAACCC+TGG | - | chr4.2:12218416-12218435 | MS.gene53499:intron | 50.0% | |
| GTACTCACATGATGCCTCCT+TGG | - | chr4.2:12218690-12218709 | MS.gene53499:intron | 50.0% | |
| GTGAGCTTAGCTCAGTTGGT+TGG | - | chr4.2:12217108-12217127 | MS.gene53499:CDS | 50.0% | |
| GTTGCAGAGGGTGGCAAAAT+AGG | + | chr4.2:12218084-12218103 | None:intergenic | 50.0% | |
| TTTGTGGCCTTCATAGCTGC+TGG | - | chr4.2:12218002-12218021 | MS.gene53499:intron | 50.0% | |
| ! | GGGAATGACGACCGTTTTGT+TGG | - | chr4.2:12218625-12218644 | MS.gene53499:intron | 50.0% |
| ! | GGGCATTTTCAGCACCATTG+TGG | - | chr4.2:12219008-12219027 | MS.gene53499:CDS | 50.0% |
| ! | TCCGGCATTTTCGTTCTCAC+GGG | - | chr4.2:12216536-12216555 | MS.gene53499:CDS | 50.0% |
| !! | TTGTGGCTTTTAGGAACCGG+AGG | - | chr4.2:12219025-12219044 | MS.gene53499:CDS | 50.0% |
| !! | TTTCGGGGTTGGCGTTGATT+AGG | + | chr4.2:12218298-12218317 | None:intergenic | 50.0% |
| AAGGGTGGCGATGGCTATGA+GGG | + | chr4.2:12218186-12218205 | None:intergenic | 55.0% | |
| CCAACTGAGCTAAGCTCACG+AGG | + | chr4.2:12217107-12217126 | None:intergenic | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | - | chr4.2:12217104-12217123 | MS.gene53499:CDS | 55.0% | |
| GAAAATGCCGGAACCGACGA+CGG | + | chr4.2:12216528-12216547 | None:intergenic | 55.0% | |
| GCAGAGGGTGGCAAAATAGG+AGG | + | chr4.2:12218081-12218100 | None:intergenic | 55.0% | |
| GCTGTGGAAATTCCTGTCGC+AGG | - | chr4.2:12216656-12216675 | MS.gene53499:CDS | 55.0% | |
| GGAGGTCCATGATCGAGCTA+CGG | + | chr4.2:12218063-12218082 | None:intergenic | 55.0% | |
| GGTGCTTAAGACTGCAAGGG+TGG | + | chr4.2:12218201-12218220 | None:intergenic | 55.0% | |
| TAAGACTGCAAGGGTGGCGA+TGG | + | chr4.2:12218195-12218214 | None:intergenic | 55.0% | |
| TGCAGTGTCAACTATGGCCG+AGG | - | chr4.2:12218400-12218419 | MS.gene53499:intron | 55.0% | |
| !! | GGGGGGTACCTTTAGTTCCT+TGG | - | chr4.2:12219089-12219108 | MS.gene53499:CDS | 55.0% |
| CAAGGGTGGCGATGGCTATG+AGG | + | chr4.2:12218187-12218206 | None:intergenic | 60.0% | |
| CACCTGTCTCCCCTTTCTGG+CGG | - | chr4.2:12217290-12217309 | MS.gene53499:CDS | 60.0% | |
| CACGGGTCTTGAAGCTCGTG+AGG | - | chr4.2:12216553-12216572 | MS.gene53499:CDS | 60.0% | |
| CAGCAGCCGTAGCTCGATCA+TGG | - | chr4.2:12218054-12218073 | MS.gene53499:intron | 60.0% | |
| CTTGAAGCTCGTGAGGAGGC+TGG | - | chr4.2:12216560-12216579 | MS.gene53499:CDS | 60.0% | |
| GCCAGAAAGGGGAGACAGGT+GGG | + | chr4.2:12217291-12217310 | None:intergenic | 60.0% | |
| GGGTCTTGAAGCTCGTGAGG+AGG | - | chr4.2:12216556-12216575 | MS.gene53499:CDS | 60.0% | |
| TCCCACCTGTCTCCCCTTTC+TGG | - | chr4.2:12217287-12217306 | MS.gene53499:CDS | 60.0% | |
| ! | TCTCCCCTTTCTGGCGGTCT+TGG | - | chr4.2:12217296-12217315 | MS.gene53499:CDS | 60.0% |
| CGCCAGAAAGGGGAGACAGG+TGG | + | chr4.2:12217292-12217311 | None:intergenic | 65.0% | |
| GACCGCCAGAAAGGGGAGAC+AGG | + | chr4.2:12217295-12217314 | None:intergenic | 65.0% | |
| TTCGGAATCGGCGCCGTCGT+CGG | - | chr4.2:12216512-12216531 | MS.gene53499:CDS | 65.0% | |
| !! | ATCGGCGCCGTCGTCGGTTC+CGG | - | chr4.2:12216518-12216537 | MS.gene53499:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 12216299 | 12219333 | 12216299 | ID=MS.gene53499 |
| chr4.2 | mRNA | 12216299 | 12219333 | 12216299 | ID=MS.gene53499.t1;Parent=MS.gene53499 |
| chr4.2 | exon | 12218955 | 12219333 | 12218955 | ID=MS.gene53499.t1.exon1;Parent=MS.gene53499.t1 |
| chr4.2 | CDS | 12218955 | 12219333 | 12218955 | ID=cds.MS.gene53499.t1;Parent=MS.gene53499.t1 |
| chr4.2 | exon | 12216299 | 12217668 | 12216299 | ID=MS.gene53499.t1.exon2;Parent=MS.gene53499.t1 |
| chr4.2 | CDS | 12216299 | 12217668 | 12216299 | ID=cds.MS.gene53499.t1;Parent=MS.gene53499.t1 |
| Gene Sequence |
| Protein sequence |
