Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53975.t1 | XP_003615684.2 | 98 | 594 | 12 | 0 | 1 | 594 | 1 | 594 | 0.00E+00 | 1146.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53975.t1 | Q944C1 | 61.6 | 597 | 220 | 4 | 1 | 594 | 7 | 597 | 4.6e-215 | 748.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53975.t1 | G7KE98 | 98.0 | 594 | 12 | 0 | 1 | 594 | 1 | 594 | 0.0e+00 | 1146.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050338 | MS.gene53975 | 0.820703 | 5.96E-53 | -1.69E-46 |
| MS.gene050577 | MS.gene53975 | -0.819385 | 1.19E-52 | -1.69E-46 |
| MS.gene050818 | MS.gene53975 | 0.818016 | 2.44E-52 | -1.69E-46 |
| MS.gene050894 | MS.gene53975 | 0.824286 | 8.76E-54 | -1.69E-46 |
| MS.gene05470 | MS.gene53975 | -0.848482 | 5.96E-60 | -1.69E-46 |
| MS.gene055251 | MS.gene53975 | 0.866858 | 2.10E-65 | -1.69E-46 |
| MS.gene055729 | MS.gene53975 | 0.823645 | 1.24E-53 | -1.69E-46 |
| MS.gene055730 | MS.gene53975 | 0.816946 | 4.26E-52 | -1.69E-46 |
| MS.gene055731 | MS.gene53975 | 0.815921 | 7.21E-52 | -1.69E-46 |
| MS.gene055748 | MS.gene53975 | -0.830442 | 2.93E-55 | -1.69E-46 |
| MS.gene055751 | MS.gene53975 | -0.829272 | 5.65E-55 | -1.69E-46 |
| MS.gene05589 | MS.gene53975 | -0.828353 | 9.42E-55 | -1.69E-46 |
| MS.gene056266 | MS.gene53975 | -0.862823 | 3.86E-64 | -1.69E-46 |
| MS.gene058334 | MS.gene53975 | 0.821997 | 3.00E-53 | -1.69E-46 |
| MS.gene058550 | MS.gene53975 | 0.818216 | 2.20E-52 | -1.69E-46 |
| MS.gene060076 | MS.gene53975 | 0.810939 | 8.98E-51 | -1.69E-46 |
| MS.gene060077 | MS.gene53975 | 0.810096 | 1.37E-50 | -1.69E-46 |
| MS.gene060982 | MS.gene53975 | -0.800417 | 1.46E-48 | -1.69E-46 |
| MS.gene061044 | MS.gene53975 | 0.840178 | 1.02E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53975.t1 | MTR_5g071010 | 97.980 | 594 | 12 | 0 | 1 | 594 | 1 | 594 | 0.0 | 1224 |
| MS.gene53975.t1 | MTR_5g082620 | 61.345 | 595 | 215 | 7 | 3 | 593 | 5 | 588 | 0.0 | 763 |
| MS.gene53975.t1 | MTR_3g070720 | 61.448 | 594 | 218 | 4 | 3 | 594 | 9 | 593 | 0.0 | 751 |
| MS.gene53975.t1 | MTR_5g082590 | 58.913 | 589 | 215 | 6 | 14 | 593 | 11 | 581 | 0.0 | 718 |
| MS.gene53975.t1 | MTR_3g069280 | 59.593 | 589 | 216 | 6 | 10 | 594 | 2 | 572 | 0.0 | 702 |
| MS.gene53975.t1 | MTR_5g082580 | 53.871 | 607 | 252 | 8 | 4 | 593 | 11 | 606 | 0.0 | 642 |
| MS.gene53975.t1 | MTR_3g070710 | 54.435 | 575 | 242 | 10 | 24 | 593 | 27 | 586 | 0.0 | 608 |
| MS.gene53975.t1 | MTR_3g070560 | 52.787 | 574 | 255 | 7 | 22 | 591 | 24 | 585 | 0.0 | 599 |
| MS.gene53975.t1 | MTR_3g070720 | 59.438 | 498 | 191 | 4 | 3 | 498 | 9 | 497 | 0.0 | 595 |
| MS.gene53975.t1 | MTR_5g071040 | 51.777 | 591 | 246 | 9 | 4 | 593 | 20 | 572 | 0.0 | 581 |
| MS.gene53975.t1 | MTR_3g070720 | 58.723 | 470 | 183 | 4 | 3 | 470 | 9 | 469 | 0.0 | 547 |
| MS.gene53975.t1 | MTR_3g070560 | 53.919 | 421 | 182 | 4 | 173 | 591 | 2 | 412 | 4.31e-160 | 464 |
| MS.gene53975.t1 | MTR_3g070720 | 58.273 | 417 | 163 | 4 | 3 | 417 | 9 | 416 | 2.23e-158 | 460 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53975.t1 | AT5G58700 | 62.647 | 597 | 214 | 4 | 1 | 594 | 7 | 597 | 0.0 | 781 |
| MS.gene53975.t1 | AT5G58700 | 62.647 | 597 | 214 | 4 | 1 | 594 | 7 | 597 | 0.0 | 781 |
| MS.gene53975.t1 | AT2G40116 | 58.333 | 612 | 217 | 6 | 3 | 593 | 18 | 612 | 0.0 | 731 |
| MS.gene53975.t1 | AT3G08510 | 60.672 | 595 | 213 | 9 | 3 | 594 | 5 | 581 | 0.0 | 724 |
| MS.gene53975.t1 | AT3G08510 | 60.672 | 595 | 213 | 9 | 3 | 594 | 5 | 581 | 0.0 | 724 |
| MS.gene53975.t1 | AT5G58690 | 57.833 | 600 | 221 | 6 | 1 | 594 | 5 | 578 | 0.0 | 706 |
| MS.gene53975.t1 | AT5G58690 | 57.833 | 600 | 221 | 6 | 1 | 594 | 5 | 578 | 0.0 | 706 |
| MS.gene53975.t1 | AT3G55940 | 58.124 | 597 | 228 | 7 | 3 | 594 | 5 | 584 | 0.0 | 694 |
| MS.gene53975.t1 | AT5G58690 | 58.763 | 582 | 208 | 6 | 19 | 594 | 4 | 559 | 0.0 | 694 |
| MS.gene53975.t1 | AT5G58700 | 65.918 | 490 | 160 | 3 | 108 | 594 | 4 | 489 | 0.0 | 671 |
| MS.gene53975.t1 | AT3G08510 | 57.647 | 595 | 202 | 10 | 3 | 594 | 5 | 552 | 0.0 | 663 |
| MS.gene53975.t1 | AT3G08510 | 57.647 | 595 | 202 | 10 | 3 | 594 | 5 | 552 | 0.0 | 663 |
| MS.gene53975.t1 | AT5G58670 | 49.408 | 591 | 259 | 6 | 3 | 591 | 4 | 556 | 0.0 | 580 |
| MS.gene53975.t1 | AT4G38530 | 48.649 | 592 | 261 | 10 | 3 | 591 | 4 | 555 | 0.0 | 555 |
| MS.gene53975.t1 | AT3G47290 | 41.368 | 585 | 281 | 11 | 12 | 593 | 5 | 530 | 1.05e-144 | 429 |
| MS.gene53975.t1 | AT3G47290 | 41.125 | 569 | 275 | 9 | 12 | 578 | 5 | 515 | 2.75e-140 | 419 |
| MS.gene53975.t1 | AT3G47220 | 41.345 | 595 | 274 | 15 | 8 | 593 | 2 | 530 | 1.68e-135 | 405 |
Find 135 sgRNAs with CRISPR-Local
Find 309 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATTGAATACCTCATTATT+TGG | 0.164810 | 5.4:-55621828 | None:intergenic |
| TCTATTCAATGCCTTTATAA+TGG | 0.238678 | 5.4:-55619404 | None:intergenic |
| AGAATTCTCCCTCACACTTT+TGG | 0.243883 | 5.4:-55620769 | None:intergenic |
| GAGGTTTCTCGTGGAGGTTC+AGG | 0.256553 | 5.4:+55618039 | MS.gene53975:CDS |
| GCAAGTTCAGGGATAGTTAA+AGG | 0.272027 | 5.4:-55622877 | None:intergenic |
| CAAATGTTTGAAATCCATTA+AGG | 0.273167 | 5.4:+55620264 | MS.gene53975:CDS |
| GACCAGTATATATGAAATAA+TGG | 0.273183 | 5.4:-55619330 | None:intergenic |
| AGCGAACGCATGTTCCTTAA+TGG | 0.273224 | 5.4:-55620278 | None:intergenic |
| TTCACTTCCAACTTATCTTT+AGG | 0.274248 | 5.4:-55621849 | None:intergenic |
| TGTTCTAATTCAGGTTTATC+AGG | 0.288361 | 5.4:+55619288 | MS.gene53975:intron |
| TTGGAATTTAAGTACTCTTT+TGG | 0.290635 | 5.4:-55620750 | None:intergenic |
| ATCCTATACTTCAATTCTTC+AGG | 0.297077 | 5.4:-55620708 | None:intergenic |
| CAAAGACAATAGAGGATAAC+TGG | 0.310479 | 5.4:+55622824 | MS.gene53975:CDS |
| CTATTCAATGCCTTTATAAT+GGG | 0.313444 | 5.4:-55619403 | None:intergenic |
| TCCCATTATTTCATATATAC+TGG | 0.316971 | 5.4:+55619328 | MS.gene53975:CDS |
| AGAAACCTCCGGAGCTGTTC+CGG | 0.327507 | 5.4:-55618025 | None:intergenic |
| CCTACATTCATAAGAAAATC+TGG | 0.327571 | 5.4:-55621804 | None:intergenic |
| TAGATGATTACTCAATCATT+TGG | 0.334602 | 5.4:+55620636 | MS.gene53975:intron |
| GAGCTTGTTCACTTAAACTA+AGG | 0.337156 | 5.4:-55621280 | None:intergenic |
| CGCTCGGAACTGATCTTATC+AGG | 0.343276 | 5.4:+55621321 | MS.gene53975:CDS |
| TTCTTCATTGTTACATCAGC+TGG | 0.355429 | 5.4:-55622799 | None:intergenic |
| ACATCATCTTTGGTGGAATT+AGG | 0.357586 | 5.4:-55619457 | None:intergenic |
| CTGTGGCACCTCAGGAAGTC+AGG | 0.358565 | 5.4:+55617960 | MS.gene53975:CDS |
| CAACCCTCCTATCAGATCTA+AGG | 0.362734 | 5.4:+55618204 | MS.gene53975:CDS |
| TAGTGATATTCCCATTATAA+AGG | 0.364078 | 5.4:+55619393 | MS.gene53975:CDS |
| AGGGATATGGCAGAAATCTT+TGG | 0.368466 | 5.4:+55621730 | MS.gene53975:CDS |
| GTGTGGCAGGTTGGCATAGC+TGG | 0.382656 | 5.4:+55622772 | MS.gene53975:intron |
| TAAAACAAGAACATCATCTT+TGG | 0.382673 | 5.4:-55619467 | None:intergenic |
| CGGGGAGGCTGTGGCACCTC+AGG | 0.401634 | 5.4:+55617952 | MS.gene53975:CDS |
| GCATTCAATATGCAGGGATA+TGG | 0.403576 | 5.4:+55621717 | MS.gene53975:CDS |
| TGTGGGAGATGGATGGAGTA+TGG | 0.405885 | 5.4:+55621976 | MS.gene53975:CDS |
| GAGTTGATTTCCAGTGAGAT+AGG | 0.412212 | 5.4:-55619359 | None:intergenic |
| AAACATTTGATCAAATCAAC+AGG | 0.419291 | 5.4:-55620250 | None:intergenic |
| GAGTTGTTGAGCTTGATATT+TGG | 0.430577 | 5.4:+55619434 | MS.gene53975:CDS |
| GGATTCTGATGAAGACGAAT+GGG | 0.432024 | 5.4:+55620818 | MS.gene53975:CDS |
| GTTTAAGTCCGGGGAGGCTG+TGG | 0.435498 | 5.4:+55617943 | MS.gene53975:CDS |
| ACTACAAGCCACTGGTTGGC+TGG | 0.443070 | 5.4:+55621673 | MS.gene53975:CDS |
| ACCAGTATATATGAAATAAT+GGG | 0.446982 | 5.4:-55619329 | None:intergenic |
| AAGAGTTATTATGACTGGAT+AGG | 0.447144 | 5.4:-55620308 | None:intergenic |
| ATTCAATCCTAAAGATAAGT+TGG | 0.447209 | 5.4:+55621842 | MS.gene53975:CDS |
| CTGGATGCATGGTGCTCAAA+TGG | 0.447345 | 5.4:+55621692 | MS.gene53975:CDS |
| GCTTCCTTCAAACTACCCTT+AGG | 0.448231 | 5.4:-55621227 | None:intergenic |
| TTCCACTTTACGATCGAAAA+GGG | 0.453469 | 5.4:+55623004 | MS.gene53975:CDS |
| CAAGTTCAGGGATAGTTAAA+GGG | 0.458544 | 5.4:-55622876 | None:intergenic |
| AGGTTTCTCGTGGAGGTTCA+GGG | 0.463842 | 5.4:+55618040 | MS.gene53975:CDS |
| CCTTCAAGCAAAAGCAGCTC+AGG | 0.464925 | 5.4:+55620351 | MS.gene53975:CDS |
| ACTCTGAGCAAAGCAAGTTC+AGG | 0.467611 | 5.4:-55622889 | None:intergenic |
| AGGATAACTGGATACCTACT+TGG | 0.472804 | 5.4:+55622836 | MS.gene53975:CDS |
| TCTCGTGGAGGTTCAGGGTG+AGG | 0.473228 | 5.4:+55618045 | MS.gene53975:CDS |
| AATGGTTGCATTCAATATGC+AGG | 0.473650 | 5.4:+55621710 | MS.gene53975:CDS |
| CTGAGGTGCCACAGCCTCCC+CGG | 0.475267 | 5.4:-55617951 | None:intergenic |
| CTTGAAGGTCTGAGGTAAGA+TGG | 0.476823 | 5.4:-55620336 | None:intergenic |
| CACCTGAAGAATTGAAGTAT+AGG | 0.482529 | 5.4:+55620706 | MS.gene53975:CDS |
| GGGAGAAGTACAACTCAGTT+AGG | 0.485603 | 5.4:+55623025 | MS.gene53975:CDS |
| GGAAGTGAAGAAGACTCTTA+AGG | 0.485765 | 5.4:+55621863 | MS.gene53975:CDS |
| GTTCCACTTTACGATCGAAA+AGG | 0.487602 | 5.4:+55623003 | MS.gene53975:CDS |
| CGTCTAATCGCTATTCATGC+TGG | 0.488281 | 5.4:+55621200 | MS.gene53975:CDS |
| TCCGACGGAGGTTTAAGTCC+GGG | 0.488875 | 5.4:+55617933 | MS.gene53975:CDS |
| AGAGTTATTATGACTGGATA+GGG | 0.489103 | 5.4:-55620307 | None:intergenic |
| TTCCGACGGAGGTTTAAGTC+CGG | 0.492663 | 5.4:+55617932 | MS.gene53975:CDS |
| AAGTGAACAAGCTCTTGAAA+AGG | 0.493412 | 5.4:+55621289 | MS.gene53975:CDS |
| CCACTGGTTGGCTGGATGCA+TGG | 0.495539 | 5.4:+55621681 | MS.gene53975:CDS |
| ACATGACTCCGGAACAGCTC+CGG | 0.496830 | 5.4:+55618017 | MS.gene53975:CDS |
| AAAACCTAAGGGTAGTTTGA+AGG | 0.497454 | 5.4:+55621223 | MS.gene53975:CDS |
| TCTTCAAGAGTTATTATGAC+TGG | 0.499791 | 5.4:-55620313 | None:intergenic |
| ATTATAAAGGCATTGAATAG+AGG | 0.500119 | 5.4:+55619406 | MS.gene53975:CDS |
| TGAATAGGTTAAAATATATG+TGG | 0.505166 | 5.4:+55621958 | MS.gene53975:intron |
| GGTTGAATTCAGTAGAGAAA+AGG | 0.506796 | 5.4:-55618186 | None:intergenic |
| TACTTCAATTCTTCAGGTGA+AGG | 0.507404 | 5.4:-55620702 | None:intergenic |
| CTCTGAGCAAAGCAAGTTCA+GGG | 0.507709 | 5.4:-55622888 | None:intergenic |
| TATTCATGCTGGAAAACCTA+AGG | 0.508266 | 5.4:+55621211 | MS.gene53975:CDS |
| ATGGAATGTTTAGATCCAAT+GGG | 0.511525 | 5.4:+55621760 | MS.gene53975:CDS |
| CATGGAATGTTTAGATCCAA+TGG | 0.512922 | 5.4:+55621759 | MS.gene53975:CDS |
| GAAGAAAACAAAGACAATAG+AGG | 0.517311 | 5.4:+55622816 | MS.gene53975:CDS |
| AACAAGAACATCATCTTTGG+TGG | 0.520787 | 5.4:-55619464 | None:intergenic |
| GGTCATAACTCCTATCTCAC+TGG | 0.522887 | 5.4:+55619349 | MS.gene53975:CDS |
| GGAGCTGTTCCGGAGTCATG+TGG | 0.523230 | 5.4:-55618015 | None:intergenic |
| GAAAAGGCTGCTGAGTCGCT+CGG | 0.537888 | 5.4:+55621305 | MS.gene53975:CDS |
| CCGATCACTGAACTAAAACA+AGG | 0.539878 | 5.4:+55622970 | MS.gene53975:CDS |
| GTTAAAATATATGTGGGAGA+TGG | 0.540418 | 5.4:+55621965 | MS.gene53975:CDS |
| TACATTACCTTAGATCTGAT+AGG | 0.550664 | 5.4:-55618211 | None:intergenic |
| GAACCTCCACGAGAAACCTC+CGG | 0.550689 | 5.4:-55618036 | None:intergenic |
| GTGAACTCTTCTTCCCAAGT+AGG | 0.552488 | 5.4:-55622850 | None:intergenic |
| ATTACCTTAGATCTGATAGG+AGG | 0.553390 | 5.4:-55618208 | None:intergenic |
| AAATATATGTGGGAGATGGA+TGG | 0.558373 | 5.4:+55621969 | MS.gene53975:CDS |
| AGGATTCTGATGAAGACGAA+TGG | 0.559684 | 5.4:+55620817 | MS.gene53975:CDS |
| GTTGCTGAAATCAAAATCAA+AGG | 0.564989 | 5.4:+55620797 | MS.gene53975:CDS |
| TTAACAAGTATGCTGAAGGT+GGG | 0.568315 | 5.4:+55617990 | MS.gene53975:CDS |
| GAGGTGACACGTGTACCCTT+CGG | 0.569106 | 5.4:-55621645 | None:intergenic |
| TGGAGGAAGTGTTGCAGAAG+CGG | 0.572705 | 5.4:+55618107 | MS.gene53975:CDS |
| CTTAAATTCCAAAAGTGTGA+GGG | 0.577857 | 5.4:+55620761 | MS.gene53975:CDS |
| CCGACGGAGGTTTAAGTCCG+GGG | 0.578306 | 5.4:+55617934 | MS.gene53975:CDS |
| ATCTTTAACAAGTATGCTGA+AGG | 0.579003 | 5.4:+55617986 | MS.gene53975:CDS |
| TTACCTTAGATCTGATAGGA+GGG | 0.579124 | 5.4:-55618207 | None:intergenic |
| TGAACTTGCTTTGCTCAGAG+TGG | 0.580019 | 5.4:+55622891 | MS.gene53975:CDS |
| TTTAACAAGTATGCTGAAGG+TGG | 0.580535 | 5.4:+55617989 | MS.gene53975:CDS |
| GAGCTGTTCCGGAGTCATGT+GGG | 0.582097 | 5.4:-55618014 | None:intergenic |
| TGATGAAGACGAATGGGGAA+AGG | 0.584159 | 5.4:+55620824 | MS.gene53975:CDS |
| GAATGTAGGTCCAAATAATG+AGG | 0.588015 | 5.4:+55621818 | MS.gene53975:CDS |
| CTCGTCGAACTACAAGCCAC+TGG | 0.588860 | 5.4:+55621665 | MS.gene53975:CDS |
| TCCACTTTACGATCGAAAAG+GGG | 0.589163 | 5.4:+55623005 | MS.gene53975:CDS |
| GAGGTTGATGATGAGAAGGA+TGG | 0.591801 | 5.4:+55618064 | MS.gene53975:CDS |
| GCTCCGGAGGTTTCTCGTGG+AGG | 0.595024 | 5.4:+55618033 | MS.gene53975:CDS |
| TGATACACAGAAGGTGGTGG+AGG | 0.598642 | 5.4:+55618090 | MS.gene53975:CDS |
| TCTGCGTGTGTTTCCGACGG+AGG | 0.598877 | 5.4:+55617921 | MS.gene53975:CDS |
| GGGTGAGGTTGATGATGAGA+AGG | 0.600028 | 5.4:+55618060 | MS.gene53975:CDS |
| CGATCACTGAACTAAAACAA+GGG | 0.607895 | 5.4:+55622971 | MS.gene53975:CDS |
| CCATGCATCCAGCCAACCAG+TGG | 0.609115 | 5.4:-55621681 | None:intergenic |
| ATGGTTGCATTCAATATGCA+GGG | 0.610409 | 5.4:+55621711 | MS.gene53975:CDS |
| AGGTGGGGCCCACATGACTC+CGG | 0.612997 | 5.4:+55618006 | MS.gene53975:CDS |
| TATATGAAATAATGGGACAA+TGG | 0.614028 | 5.4:-55619322 | None:intergenic |
| GAATAGGTTAAAATATATGT+GGG | 0.614296 | 5.4:+55621959 | MS.gene53975:intron |
| CCCCGGACTTAAACCTCCGT+CGG | 0.614381 | 5.4:-55617934 | None:intergenic |
| ACAGCTCCGGAGGTTTCTCG+TGG | 0.615674 | 5.4:+55618030 | MS.gene53975:CDS |
| TGTGGCACCTCAGGAAGTCA+GGG | 0.616932 | 5.4:+55617961 | MS.gene53975:CDS |
| TAACAAGTATGCTGAAGGTG+GGG | 0.620760 | 5.4:+55617991 | MS.gene53975:CDS |
| ACTTAAATTCCAAAAGTGTG+AGG | 0.622150 | 5.4:+55620760 | MS.gene53975:CDS |
| TGACTCCGGAACAGCTCCGG+AGG | 0.623368 | 5.4:+55618020 | MS.gene53975:CDS |
| AGAAATCTTTGGTTGATGCA+TGG | 0.623956 | 5.4:+55621741 | MS.gene53975:CDS |
| GGATAACTGGATACCTACTT+GGG | 0.627164 | 5.4:+55622837 | MS.gene53975:CDS |
| ATTCATGCTGGAAAACCTAA+GGG | 0.629230 | 5.4:+55621212 | MS.gene53975:CDS |
| AAGATCTCCCTGACTTCCTG+AGG | 0.635101 | 5.4:-55617968 | None:intergenic |
| TCGAACTACAAGCCACTGGT+TGG | 0.635611 | 5.4:+55621669 | MS.gene53975:CDS |
| ACTTGATACACAGAAGGTGG+TGG | 0.636561 | 5.4:+55618087 | MS.gene53975:CDS |
| GAGTCTGCGTGTGTTTCCGA+CGG | 0.644335 | 5.4:+55617918 | MS.gene53975:CDS |
| TTTGATCAAATCAACAGGTG+TGG | 0.646132 | 5.4:-55620245 | None:intergenic |
| GATTCTGATGAAGACGAATG+GGG | 0.648745 | 5.4:+55620819 | MS.gene53975:CDS |
| TGCACAAATTGAAGATGACA+AGG | 0.650877 | 5.4:+55620866 | MS.gene53975:CDS |
| GGATGGACTTGATACACAGA+AGG | 0.656436 | 5.4:+55618081 | MS.gene53975:CDS |
| TGGACTTGATACACAGAAGG+TGG | 0.670412 | 5.4:+55618084 | MS.gene53975:CDS |
| CAGTGGCTTGTAGTTCGACG+AGG | 0.682847 | 5.4:-55621664 | None:intergenic |
| ACGGAGGTTTAAGTCCGGGG+AGG | 0.688279 | 5.4:+55617937 | MS.gene53975:CDS |
| TGGAATGTTTAGATCCAATG+GGG | 0.693138 | 5.4:+55621761 | MS.gene53975:CDS |
| GATCGTAAAGTGGAACGGCG+CGG | 0.702580 | 5.4:-55622996 | None:intergenic |
| GGAATGTTTAGATCCAATGG+GGG | 0.738406 | 5.4:+55621762 | MS.gene53975:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACAATTTGATTTTTTATAA+AGG | - | chr5.4:55619803-55619822 | None:intergenic | 10.0% |
| !! | ATAAAATTCAAGATAATTAC+AGG | - | chr5.4:55620410-55620429 | None:intergenic | 15.0% |
| !! | CAGTTTATAACTTATAAAAA+CGG | - | chr5.4:55620961-55620980 | None:intergenic | 15.0% |
| !!! | ATAAAACGTGTAAATTTTAT+AGG | + | chr5.4:55620514-55620533 | MS.gene53975:intron | 15.0% |
| !!! | TAAAACGTGTAAATTTTATA+GGG | + | chr5.4:55620515-55620534 | MS.gene53975:intron | 15.0% |
| !!! | TTGTTTAAATTTTCATCATT+TGG | - | chr5.4:55620678-55620697 | None:intergenic | 15.0% |
| !! | AATTCAAAGAAAAAGATTAC+TGG | - | chr5.4:55620142-55620161 | None:intergenic | 20.0% |
| !! | ACCAGTATATATGAAATAAT+GGG | - | chr5.4:55619332-55619351 | None:intergenic | 20.0% |
| !! | AGGTTTATTTACAAGTTATT+TGG | + | chr5.4:55622245-55622264 | MS.gene53975:intron | 20.0% |
| !! | ATTAACTTAACATCACTAAT+AGG | - | chr5.4:55619265-55619284 | None:intergenic | 20.0% |
| !! | CAAACATATGCATTAAATTA+AGG | - | chr5.4:55619177-55619196 | None:intergenic | 20.0% |
| !! | GAATAGGTTAAAATATATGT+GGG | + | chr5.4:55621959-55621978 | MS.gene53975:intron | 20.0% |
| !! | GTAGATTATTTGTATACTTA+AGG | - | chr5.4:55621525-55621544 | None:intergenic | 20.0% |
| !! | TGAATAGGTTAAAATATATG+TGG | + | chr5.4:55621958-55621977 | MS.gene53975:intron | 20.0% |
| !! | TGCTACAAAAAACTAAAAAT+TGG | + | chr5.4:55619939-55619958 | MS.gene53975:intron | 20.0% |
| !! | TTAATTTATTCTCACTGAAT+AGG | + | chr5.4:55621943-55621962 | MS.gene53975:intron | 20.0% |
| !! | TTAGAATGTAGAATAGTTTA+AGG | - | chr5.4:55621566-55621585 | None:intergenic | 20.0% |
| !! | TTGAAGCTTAAATAACTTTA+AGG | + | chr5.4:55622155-55622174 | MS.gene53975:intron | 20.0% |
| !!! | AGGAAATTATTTCTCTTTAA+TGG | + | chr5.4:55622175-55622194 | MS.gene53975:intron | 20.0% |
| !!! | AGTTTTGAAGTTAATATGAA+TGG | + | chr5.4:55619025-55619044 | MS.gene53975:intron | 20.0% |
| !!! | ATTGGTAATTTTACTAGTAT+TGG | + | chr5.4:55619118-55619137 | MS.gene53975:intron | 20.0% |
| !!! | GTAATGTTGTTTTAATTCAA+CGG | + | chr5.4:55618248-55618267 | MS.gene53975:intron | 20.0% |
| !!! | TTACTTTCTACTTTTTTACA+GGG | + | chr5.4:55621092-55621111 | MS.gene53975:intron | 20.0% |
| !!! | TTTACTTTCTACTTTTTTAC+AGG | + | chr5.4:55621091-55621110 | MS.gene53975:intron | 20.0% |
| !!! | TTTATCTTCTTCAACTTTTA+AGG | - | chr5.4:55621252-55621271 | None:intergenic | 20.0% |
| ! | AAACAAAGTGTGTTCAAATA+AGG | + | chr5.4:55618879-55618898 | MS.gene53975:intron | 25.0% |
| ! | AAACATTTGATCAAATCAAC+AGG | - | chr5.4:55620253-55620272 | None:intergenic | 25.0% |
| ! | AAAGTTATTTAAGCTTCAAG+TGG | - | chr5.4:55622154-55622173 | None:intergenic | 25.0% |
| ! | ACATTATCTTGTGAAAATAG+AGG | - | chr5.4:55620924-55620943 | None:intergenic | 25.0% |
| ! | ATTATTGAATAACTTCTCTC+AGG | - | chr5.4:55618468-55618487 | None:intergenic | 25.0% |
| ! | ATTCAATCCTAAAGATAAGT+TGG | + | chr5.4:55621842-55621861 | MS.gene53975:CDS | 25.0% |
| ! | ATTCATTCAAATGAATCACT+AGG | - | chr5.4:55622352-55622371 | None:intergenic | 25.0% |
| ! | ATTCTACATTCTAATCGTAA+TGG | + | chr5.4:55621572-55621591 | MS.gene53975:intron | 25.0% |
| ! | CTATTCAATGCCTTTATAAT+GGG | - | chr5.4:55619406-55619425 | None:intergenic | 25.0% |
| ! | GACCAGTATATATGAAATAA+TGG | - | chr5.4:55619333-55619352 | None:intergenic | 25.0% |
| ! | GCAGTTATATTGTAAATCAA+AGG | - | chr5.4:55622084-55622103 | None:intergenic | 25.0% |
| ! | GTTAATTTCTGTTCTAATTC+AGG | + | chr5.4:55619279-55619298 | MS.gene53975:intron | 25.0% |
| ! | TAAAACAAGAACATCATCTT+TGG | - | chr5.4:55619470-55619489 | None:intergenic | 25.0% |
| ! | TAAATAGAAAAAACTTACCC+TGG | - | chr5.4:55622050-55622069 | None:intergenic | 25.0% |
| ! | TAGAATAGTTTAAGGAAAAG+TGG | - | chr5.4:55621558-55621577 | None:intergenic | 25.0% |
| ! | TAGATGATTACTCAATCATT+TGG | + | chr5.4:55620636-55620655 | MS.gene53975:intron | 25.0% |
| ! | TAGTGATATTCCCATTATAA+AGG | + | chr5.4:55619393-55619412 | MS.gene53975:CDS | 25.0% |
| ! | TATATTTCAATAAACCTCGA+AGG | + | chr5.4:55622590-55622609 | MS.gene53975:intron | 25.0% |
| ! | TATATTTCTTTCTCAAGTGT+TGG | + | chr5.4:55618368-55618387 | MS.gene53975:intron | 25.0% |
| ! | TATTGTGTATCACAAAACAA+TGG | - | chr5.4:55618846-55618865 | None:intergenic | 25.0% |
| ! | TCATGCAAATTAAGTAAACT+TGG | - | chr5.4:55619208-55619227 | None:intergenic | 25.0% |
| ! | TCCCATTATTTCATATATAC+TGG | + | chr5.4:55619328-55619347 | MS.gene53975:CDS | 25.0% |
| ! | TCTATTCAATGCCTTTATAA+TGG | - | chr5.4:55619407-55619426 | None:intergenic | 25.0% |
| ! | TTGAAGTTAATATGAATGGA+AGG | + | chr5.4:55619029-55619048 | MS.gene53975:intron | 25.0% |
| !! | ACTAGGTAAACTTAAGTTTT+CGG | - | chr5.4:55622335-55622354 | None:intergenic | 25.0% |
| !! | ATATCCTCAAAAAGTTTTTC+TGG | - | chr5.4:55621623-55621642 | None:intergenic | 25.0% |
| !! | CAAATGTTTGAAATCCATTA+AGG | + | chr5.4:55620264-55620283 | MS.gene53975:CDS | 25.0% |
| !! | CTTTGAATTTACATTTTTGC+TGG | + | chr5.4:55620153-55620172 | MS.gene53975:intron | 25.0% |
| !! | TATATGAAATAATGGGACAA+TGG | - | chr5.4:55619325-55619344 | None:intergenic | 25.0% |
| !! | TATCCTCAAAAAGTTTTTCT+GGG | - | chr5.4:55621622-55621641 | None:intergenic | 25.0% |
| !! | TGGTTTCTATTTTGTATGAT+AGG | + | chr5.4:55621592-55621611 | MS.gene53975:intron | 25.0% |
| !! | TTGGAATTTAAGTACTCTTT+TGG | - | chr5.4:55620753-55620772 | None:intergenic | 25.0% |
| !! | TTTACTAGTATTGGATGAAA+AGG | + | chr5.4:55619127-55619146 | MS.gene53975:intron | 25.0% |
| !!! | AATCGTTTGTTATATCTGAA+AGG | + | chr5.4:55620553-55620572 | MS.gene53975:intron | 25.0% |
| !!! | ACTTTTGGTTATTAGATCTA+AGG | + | chr5.4:55618275-55618294 | MS.gene53975:intron | 25.0% |
| !!! | ATTATAAAGGCATTGAATAG+AGG | + | chr5.4:55619406-55619425 | MS.gene53975:CDS | 25.0% |
| !!! | CACTTTTAAGAAGTACATTA+GGG | - | chr5.4:55618733-55618752 | None:intergenic | 25.0% |
| !!! | CTTCACAATTGCTTTAAAAA+GGG | - | chr5.4:55619553-55619572 | None:intergenic | 25.0% |
| !!! | CTTTTAGAGTACATTTCTTA+AGG | + | chr5.4:55622225-55622244 | MS.gene53975:intron | 25.0% |
| !!! | GTTTACTTAATTTGCATGAA+TGG | + | chr5.4:55619209-55619228 | MS.gene53975:intron | 25.0% |
| !!! | TCTTCACAATTGCTTTAAAA+AGG | - | chr5.4:55619554-55619573 | None:intergenic | 25.0% |
| !!! | TCTTTTGCTTTTTCTTTGAT+TGG | + | chr5.4:55619100-55619119 | MS.gene53975:intron | 25.0% |
| !!! | TGAAAAGGACAAGTTTTTTT+AGG | + | chr5.4:55619142-55619161 | MS.gene53975:intron | 25.0% |
| !!! | TTGTTTTGTGATACACAATA+CGG | + | chr5.4:55618846-55618865 | MS.gene53975:intron | 25.0% |
| AAATTGTAGAGACACAAAAG+TGG | + | chr5.4:55620476-55620495 | MS.gene53975:intron | 30.0% | |
| AAGAGTTATTATGACTGGAT+AGG | - | chr5.4:55620311-55620330 | None:intergenic | 30.0% | |
| AAGTTAATATGAATGGAAGG+TGG | + | chr5.4:55619032-55619051 | MS.gene53975:intron | 30.0% | |
| AGACTCATATCAATTGAGTT+AGG | + | chr5.4:55622456-55622475 | MS.gene53975:intron | 30.0% | |
| AGAGTTATTATGACTGGATA+GGG | - | chr5.4:55620310-55620329 | None:intergenic | 30.0% | |
| AGTTAATATGAATGGAAGGT+GGG | + | chr5.4:55619033-55619052 | MS.gene53975:intron | 30.0% | |
| ATCCTATACTTCAATTCTTC+AGG | - | chr5.4:55620711-55620730 | None:intergenic | 30.0% | |
| ATCTTTAACAAGTATGCTGA+AGG | + | chr5.4:55617986-55618005 | MS.gene53975:CDS | 30.0% | |
| ATGGAACTAGTATATGGATT+TGG | + | chr5.4:55619740-55619759 | MS.gene53975:intron | 30.0% | |
| ATGGAATGTTTAGATCCAAT+GGG | + | chr5.4:55621760-55621779 | MS.gene53975:CDS | 30.0% | |
| ATTATAGTAGTGTAACGTAG+CGG | + | chr5.4:55618912-55618931 | MS.gene53975:intron | 30.0% | |
| CCTAATGTACTTCTTAAAAG+TGG | + | chr5.4:55618731-55618750 | MS.gene53975:intron | 30.0% | |
| CCTACATTCATAAGAAAATC+TGG | - | chr5.4:55621807-55621826 | None:intergenic | 30.0% | |
| GAAGAAAACAAAGACAATAG+AGG | + | chr5.4:55622816-55622835 | MS.gene53975:CDS | 30.0% | |
| GGATTGAATACCTCATTATT+TGG | - | chr5.4:55621831-55621850 | None:intergenic | 30.0% | |
| GTGATTCATTTGAATGAATC+AGG | + | chr5.4:55622353-55622372 | MS.gene53975:intron | 30.0% | |
| GTTAAAATATATGTGGGAGA+TGG | + | chr5.4:55621965-55621984 | MS.gene53975:CDS | 30.0% | |
| GTTCAATTTAGTCCATGAAT+TGG | - | chr5.4:55620003-55620022 | None:intergenic | 30.0% | |
| GTTGCTGAAATCAAAATCAA+AGG | + | chr5.4:55620797-55620816 | MS.gene53975:CDS | 30.0% | |
| TACATTACCTTAGATCTGAT+AGG | - | chr5.4:55618214-55618233 | None:intergenic | 30.0% | |
| TCTTCAAGAGTTATTATGAC+TGG | - | chr5.4:55620316-55620335 | None:intergenic | 30.0% | |
| TGAACAAAACCAAATTGTGA+CGG | + | chr5.4:55619977-55619996 | MS.gene53975:intron | 30.0% | |
| TGGTACACAAAGATATAGTT+CGG | - | chr5.4:55619835-55619854 | None:intergenic | 30.0% | |
| TTCACAAAGGAAAAACAGTT+TGG | - | chr5.4:55619855-55619874 | None:intergenic | 30.0% | |
| TTCACTTCCAACTTATCTTT+AGG | - | chr5.4:55621852-55621871 | None:intergenic | 30.0% | |
| TTCATAAGCTCTTGCAAAAA+TGG | - | chr5.4:55622532-55622551 | None:intergenic | 30.0% | |
| TTGGATTATGTTTGTCTCAA+GGG | + | chr5.4:55618412-55618431 | MS.gene53975:intron | 30.0% | |
| ! | ACTTAAATTCCAAAAGTGTG+AGG | + | chr5.4:55620760-55620779 | MS.gene53975:CDS | 30.0% |
| ! | CCAGATTTTCTTATGAATGT+AGG | + | chr5.4:55621804-55621823 | MS.gene53975:CDS | 30.0% |
| ! | CTTAAATTCCAAAAGTGTGA+GGG | + | chr5.4:55620761-55620780 | MS.gene53975:CDS | 30.0% |
| ! | GAATTTAAGTACTCTTTTGG+AGG | - | chr5.4:55620750-55620769 | None:intergenic | 30.0% |
| ! | TGTTCTAATTCAGGTTTATC+AGG | + | chr5.4:55619288-55619307 | MS.gene53975:intron | 30.0% |
| !! | AATGAACCTCTAAAACAGTT+CGG | + | chr5.4:55619682-55619701 | MS.gene53975:intron | 30.0% |
| !! | CCACTTTTAAGAAGTACATT+AGG | - | chr5.4:55618734-55618753 | None:intergenic | 30.0% |
| !! | TAATTCAACGGTTTGACTTT+TGG | + | chr5.4:55618260-55618279 | MS.gene53975:intron | 30.0% |
| !! | TATTGCGCAATAACTGATTT+TGG | + | chr5.4:55619914-55619933 | MS.gene53975:intron | 30.0% |
| !! | TTTTTGAGGATATATCCGAA+GGG | + | chr5.4:55621630-55621649 | MS.gene53975:CDS | 30.0% |
| !!! | ACTCAGGTTCACAAATTTTT+TGG | + | chr5.4:55620584-55620603 | MS.gene53975:intron | 30.0% |
| !!! | ATGTTCTTGTTTTACATGGA+AGG | + | chr5.4:55619476-55619495 | MS.gene53975:CDS | 30.0% |
| !!! | CAATTTGGTTTTGTTCAGTT+CGG | - | chr5.4:55619974-55619993 | None:intergenic | 30.0% |
| !!! | GACAAGTTTTTTTAGGCAAA+GGG | + | chr5.4:55619149-55619168 | MS.gene53975:intron | 30.0% |
| !!! | GATGATGTTCTTGTTTTACA+TGG | + | chr5.4:55619472-55619491 | MS.gene53975:CDS | 30.0% |
| !!! | TCTTTGTTTTCAAACAGAAC+TGG | + | chr5.4:55619772-55619791 | MS.gene53975:intron | 30.0% |
| !!! | TTAGATTTTTTAGCCTACTG+TGG | + | chr5.4:55620116-55620135 | MS.gene53975:intron | 30.0% |
| AAAACCTAAGGGTAGTTTGA+AGG | + | chr5.4:55621223-55621242 | MS.gene53975:CDS | 35.0% | |
| AAATATATGTGGGAGATGGA+TGG | + | chr5.4:55621969-55621988 | MS.gene53975:CDS | 35.0% | |
| AACAAAGTTCTCTTCTGCTT+TGG | + | chr5.4:55619625-55619644 | MS.gene53975:intron | 35.0% | |
| AACAAGAACATCATCTTTGG+TGG | - | chr5.4:55619467-55619486 | None:intergenic | 35.0% | |
| AACAGAACCGTTAAACTGAA+TGG | - | chr5.4:55620090-55620109 | None:intergenic | 35.0% | |
| AAGTGAACAAGCTCTTGAAA+AGG | + | chr5.4:55621289-55621308 | MS.gene53975:CDS | 35.0% | |
| AAGTTTCTGTATCCTCTTTG+AGG | + | chr5.4:55620432-55620451 | MS.gene53975:intron | 35.0% | |
| AATGGTTGCATTCAATATGC+AGG | + | chr5.4:55621710-55621729 | MS.gene53975:CDS | 35.0% | |
| ACATCATCTTTGGTGGAATT+AGG | - | chr5.4:55619460-55619479 | None:intergenic | 35.0% | |
| ACTACCATGAACTTCTACTT+GGG | - | chr5.4:55618538-55618557 | None:intergenic | 35.0% | |
| AGCTTACATGTGAATTTGTG+TGG | + | chr5.4:55622755-55622774 | MS.gene53975:intron | 35.0% | |
| AGGATTCATCATAACGAATC+GGG | + | chr5.4:55622393-55622412 | MS.gene53975:intron | 35.0% | |
| AGTAAAAAAAGACCGCGAAT+TGG | - | chr5.4:55621077-55621096 | None:intergenic | 35.0% | |
| AGTTAGACTTTGCAATCTCA+CGG | - | chr5.4:55621451-55621470 | None:intergenic | 35.0% | |
| AGTTCAAATAAGCCAATTCG+CGG | + | chr5.4:55621062-55621081 | MS.gene53975:intron | 35.0% | |
| ATACATACGTGTGTAAAGTG+AGG | + | chr5.4:55622282-55622301 | MS.gene53975:intron | 35.0% | |
| ATGCAATCGTTGAAAGAACA+TGG | - | chr5.4:55622661-55622680 | None:intergenic | 35.0% | |
| ATGGTTGCATTCAATATGCA+GGG | + | chr5.4:55621711-55621730 | MS.gene53975:CDS | 35.0% | |
| ATTACCTTAGATCTGATAGG+AGG | - | chr5.4:55618211-55618230 | None:intergenic | 35.0% | |
| ATTATGTTTGTCTCAAGGGT+TGG | + | chr5.4:55618416-55618435 | MS.gene53975:intron | 35.0% | |
| ATTCATGCTGGAAAACCTAA+GGG | + | chr5.4:55621212-55621231 | MS.gene53975:CDS | 35.0% | |
| CAAAGACAATAGAGGATAAC+TGG | + | chr5.4:55622824-55622843 | MS.gene53975:CDS | 35.0% | |
| CAAGTTCAGGGATAGTTAAA+GGG | - | chr5.4:55622879-55622898 | None:intergenic | 35.0% | |
| CACCTGAAGAATTGAAGTAT+AGG | + | chr5.4:55620706-55620725 | MS.gene53975:CDS | 35.0% | |
| CACTTCACTATAGCTACTAT+TGG | - | chr5.4:55618814-55618833 | None:intergenic | 35.0% | |
| CAGCTCAGGTAATTTCTTAT+AGG | + | chr5.4:55620365-55620384 | MS.gene53975:intron | 35.0% | |
| CAGGATTCATCATAACGAAT+CGG | + | chr5.4:55622392-55622411 | MS.gene53975:intron | 35.0% | |
| CATGGAATGTTTAGATCCAA+TGG | + | chr5.4:55621759-55621778 | MS.gene53975:CDS | 35.0% | |
| CGATCACTGAACTAAAACAA+GGG | + | chr5.4:55622971-55622990 | MS.gene53975:CDS | 35.0% | |
| CTATAGCTACTATTGGTCAA+TGG | - | chr5.4:55618807-55618826 | None:intergenic | 35.0% | |
| CTGATCAACACATTGCAAAA+TGG | + | chr5.4:55619513-55619532 | MS.gene53975:intron | 35.0% | |
| GAATGTAGGTCCAAATAATG+AGG | + | chr5.4:55621818-55621837 | MS.gene53975:CDS | 35.0% | |
| GACATTTGCAGAATGACTAT+TGG | - | chr5.4:55621405-55621424 | None:intergenic | 35.0% | |
| GAGTTGTTGAGCTTGATATT+TGG | + | chr5.4:55619434-55619453 | MS.gene53975:CDS | 35.0% | |
| GGTTGAATTCAGTAGAGAAA+AGG | - | chr5.4:55618189-55618208 | None:intergenic | 35.0% | |
| GTTGGATTATGTTTGTCTCA+AGG | + | chr5.4:55618411-55618430 | MS.gene53975:intron | 35.0% | |
| TACTACCATGAACTTCTACT+TGG | - | chr5.4:55618539-55618558 | None:intergenic | 35.0% | |
| TACTTCAATTCTTCAGGTGA+AGG | - | chr5.4:55620705-55620724 | None:intergenic | 35.0% | |
| TATTCATGCTGGAAAACCTA+AGG | + | chr5.4:55621211-55621230 | MS.gene53975:CDS | 35.0% | |
| TCCATATACTAGTTCCATTC+CGG | - | chr5.4:55619738-55619757 | None:intergenic | 35.0% | |
| TCTTCAAAACTATCTTCACC+TGG | - | chr5.4:55619072-55619091 | None:intergenic | 35.0% | |
| TGAACAATGAATGATACGTC+CGG | + | chr5.4:55619716-55619735 | MS.gene53975:intron | 35.0% | |
| TGCACAAATTGAAGATGACA+AGG | + | chr5.4:55620866-55620885 | MS.gene53975:CDS | 35.0% | |
| TGGAATGTTTAGATCCAATG+GGG | + | chr5.4:55621761-55621780 | MS.gene53975:CDS | 35.0% | |
| TTAACAAGTATGCTGAAGGT+GGG | + | chr5.4:55617990-55618009 | MS.gene53975:CDS | 35.0% | |
| TTACCTTAGATCTGATAGGA+GGG | - | chr5.4:55618210-55618229 | None:intergenic | 35.0% | |
| TTCATGTAAGTTATCCTTCG+AGG | - | chr5.4:55622607-55622626 | None:intergenic | 35.0% | |
| TTCCACTTTACGATCGAAAA+GGG | + | chr5.4:55623004-55623023 | MS.gene53975:CDS | 35.0% | |
| TTCTTCATTGTTACATCAGC+TGG | - | chr5.4:55622802-55622821 | None:intergenic | 35.0% | |
| TTTAACAAGTATGCTGAAGG+TGG | + | chr5.4:55617989-55618008 | MS.gene53975:CDS | 35.0% | |
| TTTGATCAAATCAACAGGTG+TGG | - | chr5.4:55620248-55620267 | None:intergenic | 35.0% | |
| ! | AAAAGGTGCAAGATTCACAA+AGG | - | chr5.4:55619868-55619887 | None:intergenic | 35.0% |
| ! | AGAAATCTTTGGTTGATGCA+TGG | + | chr5.4:55621741-55621760 | MS.gene53975:CDS | 35.0% |
| ! | ATGTCATTGTCCTTGCTATA+AGG | + | chr5.4:55618697-55618716 | MS.gene53975:intron | 35.0% |
| ! | GAGCTTGTTCACTTAAACTA+AGG | - | chr5.4:55621283-55621302 | None:intergenic | 35.0% |
| ! | TATGTTTCTGTCTCAAGTGT+TGG | + | chr5.4:55618393-55618412 | MS.gene53975:intron | 35.0% |
| ! | TCACCCAGAAAAACTTTTTG+AGG | + | chr5.4:55621616-55621635 | MS.gene53975:CDS | 35.0% |
| ! | TTGCAGCTTTTAACATGTTC+AGG | - | chr5.4:55620998-55621017 | None:intergenic | 35.0% |
| ! | TTTAGAACTGGACAAGTTCA+AGG | + | chr5.4:55619885-55619904 | MS.gene53975:intron | 35.0% |
| ! | TTTTCGATCGTAAAGTGGAA+CGG | - | chr5.4:55623004-55623023 | None:intergenic | 35.0% |
| !! | AGTATATGGATTTGGTGCAT+TGG | + | chr5.4:55619748-55619767 | MS.gene53975:intron | 35.0% |
| !! | CTTTTTGAGGATATATCCGA+AGG | + | chr5.4:55621629-55621648 | MS.gene53975:CDS | 35.0% |
| !! | GTTTTACCGAACTGTTTTAG+AGG | - | chr5.4:55619691-55619710 | None:intergenic | 35.0% |
| !! | TGAACTTGTCCAGTTCTAAA+AGG | - | chr5.4:55619885-55619904 | None:intergenic | 35.0% |
| !!! | AATCTTGCACCTTTTAGAAC+TGG | + | chr5.4:55619873-55619892 | MS.gene53975:intron | 35.0% |
| !!! | CCTTGTTTTAGTTCAGTGAT+CGG | - | chr5.4:55622973-55622992 | None:intergenic | 35.0% |
| !!! | GGACAAGTTTTTTTAGGCAA+AGG | + | chr5.4:55619148-55619167 | MS.gene53975:intron | 35.0% |
| AAAAGATTACTGGCCACAGT+AGG | - | chr5.4:55620132-55620151 | None:intergenic | 40.0% | |
| AAATTGTGACGGCCAATTCA+TGG | + | chr5.4:55619988-55620007 | MS.gene53975:intron | 40.0% | |
| AATGAATGATACGTCCGGAA+TGG | + | chr5.4:55619721-55619740 | MS.gene53975:intron | 40.0% | |
| ACGGAATTAAGATCCTCTTG+AGG | - | chr5.4:55621427-55621446 | None:intergenic | 40.0% | |
| AGCAAAGAACCGAACTATGA+CGG | - | chr5.4:55620059-55620078 | None:intergenic | 40.0% | |
| AGGATAACTGGATACCTACT+TGG | + | chr5.4:55622836-55622855 | MS.gene53975:CDS | 40.0% | |
| AGGATTCTGATGAAGACGAA+TGG | + | chr5.4:55620817-55620836 | MS.gene53975:CDS | 40.0% | |
| AGGGATATGGCAGAAATCTT+TGG | + | chr5.4:55621730-55621749 | MS.gene53975:CDS | 40.0% | |
| ATGAATTGGCCGTCACAATT+TGG | - | chr5.4:55619989-55620008 | None:intergenic | 40.0% | |
| ATTCTGCAAATGTCCTCAAG+AGG | + | chr5.4:55621411-55621430 | MS.gene53975:intron | 40.0% | |
| CAAAACAGTGTTCTCAATCG+CGG | - | chr5.4:55618967-55618986 | None:intergenic | 40.0% | |
| CCGATCACTGAACTAAAACA+AGG | + | chr5.4:55622970-55622989 | MS.gene53975:CDS | 40.0% | |
| CGTAATTGTCCGTCATAGTT+CGG | + | chr5.4:55620047-55620066 | MS.gene53975:intron | 40.0% | |
| CGTTTACCTAAACAAACCCT+TGG | + | chr5.4:55622719-55622738 | MS.gene53975:intron | 40.0% | |
| CTGAAAGGAGTAAATCACTC+AGG | + | chr5.4:55620568-55620587 | MS.gene53975:intron | 40.0% | |
| CTTACCCTGGCATAAAAATC+TGG | - | chr5.4:55622037-55622056 | None:intergenic | 40.0% | |
| GAGATTGCAAAGTCTAACTC+CGG | + | chr5.4:55621452-55621471 | MS.gene53975:intron | 40.0% | |
| GATTCTGATGAAGACGAATG+GGG | + | chr5.4:55620819-55620838 | MS.gene53975:CDS | 40.0% | |
| GCAAGTTCAGGGATAGTTAA+AGG | - | chr5.4:55622880-55622899 | None:intergenic | 40.0% | |
| GCACGTGTGACATTTCAAAA+AGG | + | chr5.4:55619000-55619019 | MS.gene53975:intron | 40.0% | |
| GCATTCAATATGCAGGGATA+TGG | + | chr5.4:55621717-55621736 | MS.gene53975:CDS | 40.0% | |
| GGAAGTGAAGAAGACTCTTA+AGG | + | chr5.4:55621863-55621882 | MS.gene53975:CDS | 40.0% | |
| GGAATGTTTAGATCCAATGG+GGG | + | chr5.4:55621762-55621781 | MS.gene53975:CDS | 40.0% | |
| GGATAACTGGATACCTACTT+GGG | + | chr5.4:55622837-55622856 | MS.gene53975:CDS | 40.0% | |
| GGATTCTGATGAAGACGAAT+GGG | + | chr5.4:55620818-55620837 | MS.gene53975:CDS | 40.0% | |
| GTCTCAAGGGTTGGATTAAT+TGG | + | chr5.4:55618425-55618444 | MS.gene53975:intron | 40.0% | |
| GTTAGACTTTGCAATCTCAC+GGG | - | chr5.4:55621450-55621469 | None:intergenic | 40.0% | |
| GTTCATGGTTCGATTTACGA+AGG | + | chr5.4:55619651-55619670 | MS.gene53975:intron | 40.0% | |
| GTTCCACTTTACGATCGAAA+AGG | + | chr5.4:55623003-55623022 | MS.gene53975:CDS | 40.0% | |
| TAACAAGTATGCTGAAGGTG+GGG | + | chr5.4:55617991-55618010 | MS.gene53975:CDS | 40.0% | |
| TACATGTGAATTTGTGTGGC+AGG | + | chr5.4:55622759-55622778 | MS.gene53975:intron | 40.0% | |
| TAGTTCGGTTCTTTGCTTTG+CGG | + | chr5.4:55620062-55620081 | MS.gene53975:intron | 40.0% | |
| TCCACTTTACGATCGAAAAG+GGG | + | chr5.4:55623005-55623024 | MS.gene53975:CDS | 40.0% | |
| TCCGGAATGGAACTAGTATA+TGG | + | chr5.4:55619734-55619753 | MS.gene53975:intron | 40.0% | |
| TCTTCCCAAGTAGAAGTTCA+TGG | + | chr5.4:55618531-55618550 | MS.gene53975:intron | 40.0% | |
| TGAAGAAGACTCTTAAGGTG+AGG | + | chr5.4:55621868-55621887 | MS.gene53975:intron | 40.0% | |
| ! | AGAATTCTCCCTCACACTTT+TGG | - | chr5.4:55620772-55620791 | None:intergenic | 40.0% |
| ! | GAAGTACCAAGGGTTTGTTT+AGG | - | chr5.4:55622728-55622747 | None:intergenic | 40.0% |
| ! | GAGTTGATTTCCAGTGAGAT+AGG | - | chr5.4:55619362-55619381 | None:intergenic | 40.0% |
| ! | GTATCCTCTTTGAGGACTAA+AGG | + | chr5.4:55620440-55620459 | MS.gene53975:intron | 40.0% |
| ! | TCCACCAGATTTTTATGCCA+GGG | + | chr5.4:55622030-55622049 | MS.gene53975:CDS | 40.0% |
| ! | TTGTGTTGACCTGTGAATGT+AGG | + | chr5.4:55620215-55620234 | MS.gene53975:intron | 40.0% |
| !! | GTCTGAGACAGATGATTTTG+CGG | + | chr5.4:55622933-55622952 | MS.gene53975:CDS | 40.0% |
| !! | TCTGAGACAGATGATTTTGC+GGG | + | chr5.4:55622934-55622953 | MS.gene53975:CDS | 40.0% |
| ACCCTGGCATAAAAATCTGG+TGG | - | chr5.4:55622034-55622053 | None:intergenic | 45.0% | |
| ACTCTGAGCAAAGCAAGTTC+AGG | - | chr5.4:55622892-55622911 | None:intergenic | 45.0% | |
| ACTTGATACACAGAAGGTGG+TGG | + | chr5.4:55618087-55618106 | MS.gene53975:CDS | 45.0% | |
| AGCGAACGCATGTTCCTTAA+TGG | - | chr5.4:55620281-55620300 | None:intergenic | 45.0% | |
| AGGATTCATCACTGTGAGTC+AGG | + | chr5.4:55622373-55622392 | MS.gene53975:intron | 45.0% | |
| CAACCCTCCTATCAGATCTA+AGG | + | chr5.4:55618204-55618223 | MS.gene53975:CDS | 45.0% | |
| CATGCCTTTAGTCCTCAAAG+AGG | - | chr5.4:55620447-55620466 | None:intergenic | 45.0% | |
| CATGGTAGTAGTCGTCATCA+CGG | + | chr5.4:55618549-55618568 | MS.gene53975:intron | 45.0% | |
| CGTCTAATCGCTATTCATGC+TGG | + | chr5.4:55621200-55621219 | MS.gene53975:CDS | 45.0% | |
| CTCTGAGCAAAGCAAGTTCA+GGG | - | chr5.4:55622891-55622910 | None:intergenic | 45.0% | |
| GAACTTCTACTTGGGAAGAG+TGG | - | chr5.4:55618530-55618549 | None:intergenic | 45.0% | |
| GCTTCCTTCAAACTACCCTT+AGG | - | chr5.4:55621230-55621249 | None:intergenic | 45.0% | |
| GGTCAATGTCCTACATTCAC+AGG | - | chr5.4:55620227-55620246 | None:intergenic | 45.0% | |
| GGTCATAACTCCTATCTCAC+TGG | + | chr5.4:55619349-55619368 | MS.gene53975:CDS | 45.0% | |
| GTGAACTCTTCTTCCCAAGT+AGG | - | chr5.4:55622853-55622872 | None:intergenic | 45.0% | |
| GTTGACCCAATCAACTGAGT+CGG | + | chr5.4:55618579-55618598 | MS.gene53975:intron | 45.0% | |
| TGATGAAGACGAATGGGGAA+AGG | + | chr5.4:55620824-55620843 | MS.gene53975:CDS | 45.0% | |
| TGCGGCTCCATTCAGTTTAA+CGG | + | chr5.4:55620080-55620099 | MS.gene53975:intron | 45.0% | |
| TGGACTTGATACACAGAAGG+TGG | + | chr5.4:55618084-55618103 | MS.gene53975:CDS | 45.0% | |
| TGTGAATTTGTGTGGCAGGT+TGG | + | chr5.4:55622763-55622782 | MS.gene53975:intron | 45.0% | |
| TTTAGATCCAATGGGGGATG+TGG | + | chr5.4:55621768-55621787 | MS.gene53975:CDS | 45.0% | |
| ! | CTCCACCAGATTTTTATGCC+AGG | + | chr5.4:55622029-55622048 | MS.gene53975:CDS | 45.0% |
| ! | CTTCTGCTTTGGACTGTTCA+TGG | + | chr5.4:55619636-55619655 | MS.gene53975:intron | 45.0% |
| ! | CTTGAAGGTCTGAGGTAAGA+TGG | - | chr5.4:55620339-55620358 | None:intergenic | 45.0% |
| ! | GGATGGACTTGATACACAGA+AGG | + | chr5.4:55618081-55618100 | MS.gene53975:CDS | 45.0% |
| ! | GGGAGAAGTACAACTCAGTT+AGG | + | chr5.4:55623025-55623044 | MS.gene53975:CDS | 45.0% |
| ! | TCCCCTTTTCGATCGTAAAG+TGG | - | chr5.4:55623009-55623028 | None:intergenic | 45.0% |
| ! | TGAACTTGCTTTGCTCAGAG+TGG | + | chr5.4:55622891-55622910 | MS.gene53975:CDS | 45.0% |
| ! | TGCTTTTGCTTGAAGGTCTG+AGG | - | chr5.4:55620347-55620366 | None:intergenic | 45.0% |
| !! | AGCTCATGCAAGAAGTACCA+AGG | - | chr5.4:55622739-55622758 | None:intergenic | 45.0% |
| !! | GAGGTTGATGATGAGAAGGA+TGG | + | chr5.4:55618064-55618083 | MS.gene53975:CDS | 45.0% |
| !! | GCTCATGCAAGAAGTACCAA+GGG | - | chr5.4:55622738-55622757 | None:intergenic | 45.0% |
| AAGATCTCCCTGACTTCCTG+AGG | - | chr5.4:55617971-55617990 | None:intergenic | 50.0% | |
| AGGTTTCTCGTGGAGGTTCA+GGG | + | chr5.4:55618040-55618059 | MS.gene53975:CDS | 50.0% | |
| CCCAATCAACTGAGTCGGTT+CGG | + | chr5.4:55618584-55618603 | MS.gene53975:intron | 50.0% | |
| CCTTCAAGCAAAAGCAGCTC+AGG | + | chr5.4:55620351-55620370 | MS.gene53975:CDS | 50.0% | |
| CGCTCGGAACTGATCTTATC+AGG | + | chr5.4:55621321-55621340 | MS.gene53975:CDS | 50.0% | |
| CTGGATGCATGGTGCTCAAA+TGG | + | chr5.4:55621692-55621711 | MS.gene53975:CDS | 50.0% | |
| GACTTTGCAATCTCACGGGA+CGG | - | chr5.4:55621446-55621465 | None:intergenic | 50.0% | |
| GTGGGATTGAACAATGCACC+AGG | + | chr5.4:55619051-55619070 | MS.gene53975:intron | 50.0% | |
| TACGTAACCACATCCCCCAT+TGG | - | chr5.4:55621778-55621797 | None:intergenic | 50.0% | |
| TCCTCGACGTCCTTATAGCA+AGG | - | chr5.4:55618710-55618729 | None:intergenic | 50.0% | |
| TCGAACTACAAGCCACTGGT+TGG | + | chr5.4:55621669-55621688 | MS.gene53975:CDS | 50.0% | |
| TGTGGGAGATGGATGGAGTA+TGG | + | chr5.4:55621976-55621995 | MS.gene53975:CDS | 50.0% | |
| TTCCGACGGAGGTTTAAGTC+CGG | + | chr5.4:55617932-55617951 | MS.gene53975:CDS | 50.0% | |
| ! | CCGAACCGACTCAGTTGATT+GGG | - | chr5.4:55618587-55618606 | None:intergenic | 50.0% |
| ! | GTGTTCTCAATCGCGGATTG+TGG | - | chr5.4:55618960-55618979 | None:intergenic | 50.0% |
| ! | TCCTTGCTATAAGGACGTCG+AGG | + | chr5.4:55618706-55618725 | MS.gene53975:intron | 50.0% |
| ! | TGATACACAGAAGGTGGTGG+AGG | + | chr5.4:55618090-55618109 | MS.gene53975:CDS | 50.0% |
| !! | GGGTGAGGTTGATGATGAGA+AGG | + | chr5.4:55618060-55618079 | MS.gene53975:CDS | 50.0% |
| !! | TGGAGGAAGTGTTGCAGAAG+CGG | + | chr5.4:55618107-55618126 | MS.gene53975:CDS | 50.0% |
| !!! | CCTGAGCTGCTTTTGCTTGA+AGG | - | chr5.4:55620354-55620373 | None:intergenic | 50.0% |
| ACATGACTCCGGAACAGCTC+CGG | + | chr5.4:55618017-55618036 | MS.gene53975:CDS | 55.0% | |
| AGAAACCTCCGGAGCTGTTC+CGG | - | chr5.4:55618028-55618047 | None:intergenic | 55.0% | |
| CGTAGTGTCAGCTCAGTAGC+CGG | - | chr5.4:55621474-55621493 | None:intergenic | 55.0% | |
| CTCGTCGAACTACAAGCCAC+TGG | + | chr5.4:55621665-55621684 | MS.gene53975:CDS | 55.0% | |
| GAAAAGGCTGCTGAGTCGCT+CGG | + | chr5.4:55621305-55621324 | MS.gene53975:CDS | 55.0% | |
| GAACCTCCACGAGAAACCTC+CGG | - | chr5.4:55618039-55618058 | None:intergenic | 55.0% | |
| GAGCTGTTCCGGAGTCATGT+GGG | - | chr5.4:55618017-55618036 | None:intergenic | 55.0% | |
| GAGGTGACACGTGTACCCTT+CGG | - | chr5.4:55621648-55621667 | None:intergenic | 55.0% | |
| GAGGTTTCTCGTGGAGGTTC+AGG | + | chr5.4:55618039-55618058 | MS.gene53975:CDS | 55.0% | |
| GAGTCTGCGTGTGTTTCCGA+CGG | + | chr5.4:55617918-55617937 | MS.gene53975:CDS | 55.0% | |
| GATCGTAAAGTGGAACGGCG+CGG | - | chr5.4:55622999-55623018 | None:intergenic | 55.0% | |
| TCCGACGGAGGTTTAAGTCC+GGG | + | chr5.4:55617933-55617952 | MS.gene53975:CDS | 55.0% | |
| TGTGGCACCTCAGGAAGTCA+GGG | + | chr5.4:55617961-55617980 | MS.gene53975:CDS | 55.0% | |
| ! | ACTACAAGCCACTGGTTGGC+TGG | + | chr5.4:55621673-55621692 | MS.gene53975:CDS | 55.0% |
| ! | CAGTGGCTTGTAGTTCGACG+AGG | - | chr5.4:55621667-55621686 | None:intergenic | 55.0% |
| ! | GCCGAACCGACTCAGTTGAT+TGG | - | chr5.4:55618588-55618607 | None:intergenic | 55.0% |
| ACAGCTCCGGAGGTTTCTCG+TGG | + | chr5.4:55618030-55618049 | MS.gene53975:CDS | 60.0% | |
| ACGGAGGTTTAAGTCCGGGG+AGG | + | chr5.4:55617937-55617956 | MS.gene53975:CDS | 60.0% | |
| CCATGCATCCAGCCAACCAG+TGG | - | chr5.4:55621684-55621703 | None:intergenic | 60.0% | |
| CCCCGGACTTAAACCTCCGT+CGG | - | chr5.4:55617937-55617956 | None:intergenic | 60.0% | |
| CCGACGGAGGTTTAAGTCCG+GGG | + | chr5.4:55617934-55617953 | MS.gene53975:CDS | 60.0% | |
| CTGTGGCACCTCAGGAAGTC+AGG | + | chr5.4:55617960-55617979 | MS.gene53975:CDS | 60.0% | |
| GGAGCTGTTCCGGAGTCATG+TGG | - | chr5.4:55618018-55618037 | None:intergenic | 60.0% | |
| GTTTAAGTCCGGGGAGGCTG+TGG | + | chr5.4:55617943-55617962 | MS.gene53975:CDS | 60.0% | |
| TCTCGTGGAGGTTCAGGGTG+AGG | + | chr5.4:55618045-55618064 | MS.gene53975:CDS | 60.0% | |
| TCTGCGTGTGTTTCCGACGG+AGG | + | chr5.4:55617921-55617940 | MS.gene53975:CDS | 60.0% | |
| ! | CCACTGGTTGGCTGGATGCA+TGG | + | chr5.4:55621681-55621700 | MS.gene53975:CDS | 60.0% |
| ! | GTGTGGCAGGTTGGCATAGC+TGG | + | chr5.4:55622772-55622791 | MS.gene53975:intron | 60.0% |
| AGGTGGGGCCCACATGACTC+CGG | + | chr5.4:55618006-55618025 | MS.gene53975:CDS | 65.0% | |
| GCTCCGGAGGTTTCTCGTGG+AGG | + | chr5.4:55618033-55618052 | MS.gene53975:CDS | 65.0% | |
| TGACTCCGGAACAGCTCCGG+AGG | + | chr5.4:55618020-55618039 | MS.gene53975:CDS | 65.0% | |
| ! | CTGAGGTGCCACAGCCTCCC+CGG | - | chr5.4:55617954-55617973 | None:intergenic | 70.0% |
| CGGGGAGGCTGTGGCACCTC+AGG | + | chr5.4:55617952-55617971 | MS.gene53975:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 55617905 | 55623074 | 55617905 | ID=MS.gene53975 |
| chr5.4 | mRNA | 55617905 | 55623074 | 55617905 | ID=MS.gene53975.t1;Parent=MS.gene53975 |
| chr5.4 | exon | 55617905 | 55618225 | 55617905 | ID=MS.gene53975.t1.exon1;Parent=MS.gene53975.t1 |
| chr5.4 | CDS | 55617905 | 55618225 | 55617905 | ID=cds.MS.gene53975.t1;Parent=MS.gene53975.t1 |
| chr5.4 | exon | 55619301 | 55619497 | 55619301 | ID=MS.gene53975.t1.exon2;Parent=MS.gene53975.t1 |
| chr5.4 | CDS | 55619301 | 55619497 | 55619301 | ID=cds.MS.gene53975.t1;Parent=MS.gene53975.t1 |
| chr5.4 | exon | 55620237 | 55620372 | 55620237 | ID=MS.gene53975.t1.exon3;Parent=MS.gene53975.t1 |
| chr5.4 | CDS | 55620237 | 55620372 | 55620237 | ID=cds.MS.gene53975.t1;Parent=MS.gene53975.t1 |
| chr5.4 | exon | 55620639 | 55620887 | 55620639 | ID=MS.gene53975.t1.exon4;Parent=MS.gene53975.t1 |
| chr5.4 | CDS | 55620639 | 55620887 | 55620639 | ID=cds.MS.gene53975.t1;Parent=MS.gene53975.t1 |
| chr5.4 | exon | 55621113 | 55621342 | 55621113 | ID=MS.gene53975.t1.exon5;Parent=MS.gene53975.t1 |
| chr5.4 | CDS | 55621113 | 55621342 | 55621113 | ID=cds.MS.gene53975.t1;Parent=MS.gene53975.t1 |
| chr5.4 | exon | 55621614 | 55621884 | 55621614 | ID=MS.gene53975.t1.exon6;Parent=MS.gene53975.t1 |
| chr5.4 | CDS | 55621614 | 55621884 | 55621614 | ID=cds.MS.gene53975.t1;Parent=MS.gene53975.t1 |
| chr5.4 | exon | 55621965 | 55622051 | 55621965 | ID=MS.gene53975.t1.exon7;Parent=MS.gene53975.t1 |
| chr5.4 | CDS | 55621965 | 55622051 | 55621965 | ID=cds.MS.gene53975.t1;Parent=MS.gene53975.t1 |
| chr5.4 | exon | 55622781 | 55623074 | 55622781 | ID=MS.gene53975.t1.exon8;Parent=MS.gene53975.t1 |
| chr5.4 | CDS | 55622781 | 55623074 | 55622781 | ID=cds.MS.gene53975.t1;Parent=MS.gene53975.t1 |
| Gene Sequence |
| Protein sequence |
