AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene55750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55750.t1 MTR_8g098980 99.688 321 1 0 1 321 1 321 0.0 662
MS.gene55750.t1 MTR_1g079950 79.114 316 64 2 1 315 1 315 0.0 541
MS.gene55750.t1 MTR_1g079950 79.114 316 64 2 1 315 30 344 0.0 541
MS.gene55750.t1 MTR_1g079950 79.114 316 64 2 1 315 1 315 0.0 540
MS.gene55750.t1 MTR_1g079950 79.114 316 64 2 1 315 1 315 0.0 540
MS.gene55750.t1 MTR_7g116380 78.165 316 67 2 1 315 1 315 0.0 533
MS.gene55750.t1 MTR_7g116380 78.165 316 67 2 1 315 1 315 0.0 533
MS.gene55750.t1 MTR_5g081230 78.431 306 66 0 1 306 17 322 0.0 523
MS.gene55750.t1 MTR_1g074880 74.603 315 78 2 1 314 1 314 0.0 511
MS.gene55750.t1 MTR_1g074880 74.603 315 78 2 1 314 1 314 0.0 510
MS.gene55750.t1 MTR_1g043240 75.161 310 75 2 1 309 1 309 2.79e-180 501
MS.gene55750.t1 MTR_7g112870 72.500 320 79 3 1 318 5 317 1.14e-176 491
MS.gene55750.t1 MTR_8g005010 77.163 289 65 1 6 294 4 291 6.35e-174 484
MS.gene55750.t1 MTR_1g079950 82.422 256 44 1 61 315 34 289 1.11e-165 464
MS.gene55750.t1 MTR_1g074880 78.516 256 54 1 60 314 4 259 9.42e-158 442
MS.gene55750.t1 MTR_1g074880 78.516 256 54 1 60 314 4 259 1.03e-157 441
MS.gene55750.t1 MTR_8g085610 46.128 297 150 3 6 301 9 296 2.93e-96 287
MS.gene55750.t1 MTR_7g107310 47.826 276 142 2 27 301 27 301 1.97e-95 285
MS.gene55750.t1 MTR_8g085610 47.970 271 139 2 32 301 3 272 3.09e-94 281
MS.gene55750.t1 MTR_5g037200 48.679 265 134 2 27 290 20 283 1.56e-93 280
MS.gene55750.t1 MTR_8g062430 48.302 265 135 2 27 290 20 283 1.82e-93 280
MS.gene55750.t1 MTR_5g093990 44.948 287 154 2 27 312 17 300 5.77e-93 279
MS.gene55750.t1 MTR_1g039380 41.158 311 168 6 6 314 3 300 5.89e-90 271
MS.gene55750.t1 MTR_1g039380 41.935 279 155 4 38 314 3 276 2.18e-86 261
MS.gene55750.t1 MTR_2g087530 50.000 272 122 5 23 280 660 931 9.60e-82 267
MS.gene55750.t1 MTR_1g089370 46.875 288 135 7 9 279 528 814 1.08e-80 262
MS.gene55750.t1 MTR_2g087530 45.603 307 151 6 3 293 525 831 1.82e-80 261
MS.gene55750.t1 MTR_4g050540 45.603 307 151 6 3 293 643 949 4.27e-80 262
MS.gene55750.t1 MTR_3g452710 42.160 287 155 5 3 283 168 449 3.35e-70 226
MS.gene55750.t1 MTR_3g452710 42.160 287 155 5 3 283 235 516 1.52e-69 226
MS.gene55750.t1 MTR_2g100130 38.871 319 178 8 3 310 86 398 4.49e-68 218
MS.gene55750.t1 MTR_2g100130 40.972 288 158 6 3 283 156 438 6.27e-67 217
MS.gene55750.t1 MTR_2g100130 41.404 285 155 6 3 280 195 474 6.42e-67 218
MS.gene55750.t1 MTR_2g100130 41.404 285 155 6 3 280 185 464 9.37e-67 218
MS.gene55750.t1 MTR_2g100130 41.404 285 155 6 3 280 195 474 1.33e-66 218
MS.gene55750.t1 MTR_2g100130 40.972 288 157 7 3 283 156 437 2.53e-65 213
MS.gene55750.t1 MTR_2g100130 41.404 285 154 7 3 280 195 473 2.60e-65 214
MS.gene55750.t1 MTR_2g100130 41.818 275 148 6 3 270 195 464 4.02e-65 213
MS.gene55750.t1 MTR_2g100160 38.438 320 180 9 2 310 104 417 6.17e-61 200
MS.gene55750.t1 MTR_5g037200 50.898 167 81 1 27 192 20 186 1.12e-59 191
MS.gene55750.t1 MTR_8g072600 31.111 315 152 10 34 283 100 414 8.18e-36 134
MS.gene55750.t1 MTR_8g072600 30.677 251 130 7 34 240 100 350 9.76e-29 113
MS.gene55750.t1 MTR_2g099710 28.931 318 171 14 32 305 211 517 1.28e-21 95.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55750.t1 AT1G64040 85.266 319 47 0 1 319 1 319 0.0 589
MS.gene55750.t1 AT4G11240 83.438 320 53 0 1 320 1 320 0.0 585
MS.gene55750.t1 AT2G29400 81.457 302 53 2 1 300 15 315 0.0 526
MS.gene55750.t1 AT2G39840 79.070 301 63 0 1 301 14 314 0.0 516
MS.gene55750.t1 AT5G59160 78.146 302 65 1 1 301 9 310 0.0 509
MS.gene55750.t1 AT5G59160 78.146 302 65 1 1 301 9 310 0.0 509
MS.gene55750.t1 AT5G59160 78.146 302 65 1 1 301 9 310 0.0 509
MS.gene55750.t1 AT3G46820 77.152 302 68 1 1 301 9 310 0.0 503
MS.gene55750.t1 AT5G43380 70.717 321 93 1 1 321 1 320 9.94e-176 489
MS.gene55750.t1 AT5G43380 71.519 316 89 1 1 316 1 315 3.90e-175 488
MS.gene55750.t1 AT5G43380 70.717 321 93 1 1 321 1 320 5.29e-175 488
MS.gene55750.t1 AT5G27840 75.338 296 70 1 1 296 9 301 6.25e-174 484
MS.gene55750.t1 AT5G27840 73.786 309 73 2 1 304 9 314 7.09e-174 485
MS.gene55750.t1 AT5G27840 75.338 296 70 1 1 296 9 301 1.37e-173 484
MS.gene55750.t1 AT5G27840 75.338 296 70 1 1 296 9 301 1.37e-173 484
MS.gene55750.t1 AT3G05580 76.014 296 68 1 1 296 9 301 3.53e-173 483
MS.gene55750.t1 AT3G05580 75.304 247 58 1 1 247 9 252 8.00e-141 398
MS.gene55750.t1 AT2G42500 47.138 297 147 3 6 301 14 301 5.12e-98 292
MS.gene55750.t1 AT3G58500 46.465 297 149 3 6 301 14 301 1.00e-96 288
MS.gene55750.t1 AT5G55260 46.739 276 146 1 27 301 17 292 7.29e-95 283
MS.gene55750.t1 AT1G10430 46.503 286 143 3 6 290 7 283 1.70e-94 283
MS.gene55750.t1 AT1G10430 46.503 286 143 3 6 290 7 283 1.70e-94 283
MS.gene55750.t1 AT1G59830 46.853 286 142 3 6 290 7 283 4.39e-94 281
MS.gene55750.t1 AT1G69960 47.547 265 137 2 27 290 21 284 4.13e-93 279
MS.gene55750.t1 AT4G26720 43.310 284 160 1 19 301 9 292 2.02e-92 277
MS.gene55750.t1 AT1G50370 40.453 309 172 5 8 314 2 300 3.47e-90 271
MS.gene55750.t1 AT3G19980 40.453 309 172 5 8 314 2 300 5.48e-90 271
MS.gene55750.t1 AT5G55260 40.694 317 146 2 27 301 17 333 1.67e-86 264
MS.gene55750.t1 AT1G59830 48.400 250 119 3 6 254 7 247 1.88e-83 253
MS.gene55750.t1 AT2G27210 50.000 272 122 5 23 280 666 937 1.76e-82 269
MS.gene55750.t1 AT2G27210 50.000 272 122 5 23 280 671 942 1.86e-82 269
MS.gene55750.t1 AT1G08420 49.632 272 123 5 23 280 677 948 1.35e-81 266
MS.gene55750.t1 AT1G08420 49.632 272 123 5 23 280 682 953 1.42e-81 266
MS.gene55750.t1 AT4G03080 45.364 302 147 7 9 293 530 830 1.15e-80 262
MS.gene55750.t1 AT2G42500 49.327 223 111 2 80 301 33 254 1.55e-76 235
MS.gene55750.t1 AT1G03445 42.857 301 149 8 3 282 446 744 8.40e-73 239
MS.gene55750.t1 AT1G03445 42.857 301 149 8 3 282 446 744 8.94e-73 239
MS.gene55750.t1 AT2G42810 40.702 285 157 5 2 280 170 448 8.75e-67 217
MS.gene55750.t1 AT2G42810 40.702 285 157 5 2 280 170 448 8.75e-67 217
MS.gene55750.t1 AT2G42810 40.702 285 157 5 2 280 170 448 8.75e-67 217
MS.gene55750.t1 AT2G42810 40.702 285 157 5 2 280 224 502 2.40e-66 217
MS.gene55750.t1 AT2G42810 40.702 285 157 5 2 280 223 501 2.53e-66 217
MS.gene55750.t1 AT2G42500 45.238 168 80 3 6 169 14 173 1.80e-44 150
MS.gene55750.t1 AT2G42500 44.571 175 83 4 6 176 14 178 2.55e-44 150
MS.gene55750.t1 AT2G42500 46.250 160 74 3 6 161 14 165 1.05e-43 148
MS.gene55750.t1 AT5G63870 30.303 264 134 7 56 269 79 342 5.08e-31 121
MS.gene55750.t1 AT5G63870 30.303 264 134 7 56 269 79 342 5.08e-31 121
MS.gene55750.t1 AT5G63870 30.000 220 119 5 56 240 79 298 2.25e-25 103
MS.gene55750.t1 AT1G48120 28.477 302 144 8 34 269 630 925 5.70e-25 106
MS.gene55750.t1 AT5G10900 29.885 261 143 10 56 278 225 483 1.12e-20 93.2
MS.gene55750.t1 AT5G10900 29.885 261 143 10 56 278 225 483 1.36e-20 92.8
MS.gene55750.t1 AT5G10900 29.885 261 143 10 56 278 225 483 1.43e-20 92.8

Find 71 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCTCCATCAATCGTATTTA+TGG 0.118761 4.3:+5244708 MS.gene55750:CDS
GAAGCAAATTACTTATTTCT+TGG 0.231778 4.3:+5244576 MS.gene55750:CDS
TCAAACTCACCACAGTAATT+TGG 0.239332 4.3:-5245739 None:intergenic
ACCTTATGAGGTGGAGTTCC+AGG 0.245870 4.3:-5245871 None:intergenic
CGAGGTGTTTCATTTACATT+TGG 0.254753 4.3:+5244987 MS.gene55750:CDS
TATCGGAAGACTTCAGTATC+TGG 0.265509 4.3:-5245810 None:intergenic
TCCAACTTTGCCCTTCTTAT+CGG 0.312310 4.3:-5245827 None:intergenic
CCATGATCTGGCACATCAAT+AGG 0.319380 4.3:-5244900 None:intergenic
AGAAATAAGTAATTTGCTTC+AGG 0.320791 4.3:-5244573 None:intergenic
GAGGTGTTTCATTTACATTT+GGG 0.340319 4.3:+5244988 MS.gene55750:CDS
TGATTGCTTTAATTGTTTAC+CGG 0.357293 4.3:+5244785 MS.gene55750:CDS
GCTTCAAGTTCAAGAAGATT+AGG 0.359782 4.3:-5243326 None:intergenic
AAGAAGGGCAAAGTTGGATT+TGG 0.364950 4.3:+5245832 MS.gene55750:CDS
CGTATTCGAACAGCCTTAAA+AGG 0.372745 4.3:-5244539 None:intergenic
AGGAGAACTTCTTTCTTCTC+AGG 0.373373 4.3:+5244670 MS.gene55750:CDS
CATCCCTCGAGATCTTTATC+AGG 0.394159 4.3:-5244951 None:intergenic
GCCTTCTCTGCGACCTTCTG+TGG 0.394394 4.3:+5244922 MS.gene55750:CDS
GCCTTAAAAGGTCTGAAAAC+TGG 0.396799 4.3:-5244527 None:intergenic
GATTGATGGAGGCGCATTCA+TGG 0.439246 4.3:-5244698 None:intergenic
GAAACCATAAATACGATTGA+TGG 0.442568 4.3:-5244712 None:intergenic
TACAGTCACCAGCTTACGTT+TGG 0.445882 4.3:-5245707 None:intergenic
ACCTGGAACTCCACCTCATA+AGG 0.452558 4.3:+5245870 MS.gene55750:CDS
GAAGCTCCTATCAAAATTTG+TGG 0.455039 4.3:+5243344 MS.gene55750:CDS
CCTATTGATGTGCCAGATCA+TGG 0.458791 4.3:+5244900 MS.gene55750:CDS
GGAGGTATAATGTTCGTCTC+TGG 0.469205 4.3:+5244751 MS.gene55750:CDS
CCCACAGAAGGTCGCAGAGA+AGG 0.474160 4.3:-5244923 None:intergenic
ACTGAAGTCTTCCGATAAGA+AGG 0.476810 4.3:+5245816 MS.gene55750:CDS
AGAAGATCCTTTGCATGCAT+GGG 0.477596 4.3:+5244826 MS.gene55750:CDS
TCGCAGAGAAGGCCATGATC+TGG 0.483085 4.3:-5244912 None:intergenic
CATGATCTGGCACATCAATA+GGG 0.484326 4.3:-5244899 None:intergenic
TCCGATAAGAAGGGCAAAGT+TGG 0.484368 4.3:+5245826 MS.gene55750:CDS
GGAGAACTTCTTTCTTCTCA+GGG 0.491751 4.3:+5244671 MS.gene55750:CDS
AATAAGTAATTTGCTTCAGG+TGG 0.494184 4.3:-5244570 None:intergenic
GCGTCCCAGGTTGTAGAAGA+TGG 0.498692 4.3:+5245670 MS.gene55750:intron
GAGAAGATCCTTTGCATGCA+TGG 0.499556 4.3:+5244825 MS.gene55750:CDS
TGATAAAGATCTCGAGGGAT+GGG 0.500185 4.3:+5244953 MS.gene55750:CDS
TCAGCTTTGTACTTCTGCTA+AGG 0.513143 4.3:+5243286 MS.gene55750:CDS
TCTCTTGGAGATGGATGATA+CGG 0.513600 4.3:+5243178 None:intergenic
CCTTCTCTGCGACCTTCTGT+GGG 0.527902 4.3:+5244923 MS.gene55750:CDS
CTGATAAAGATCTCGAGGGA+TGG 0.534435 4.3:+5244952 MS.gene55750:CDS
TTTAAGGCTGTTCGAATACG+GGG 0.546220 4.3:+5244542 MS.gene55750:CDS
ATTTACATTTGGGGCTGACA+AGG 0.548915 4.3:+5244998 MS.gene55750:CDS
AAAGGTCTGAAAACTGGCCA+TGG 0.549539 4.3:-5244521 None:intergenic
TCTGATATGTAGAGCTCACC+AGG 0.551295 4.3:+5245052 MS.gene55750:CDS
AGGTGTTTCATTTACATTTG+GGG 0.560742 4.3:+5244989 MS.gene55750:CDS
TTGTTTGCAGGAGATGTCCA+TGG 0.568088 4.3:+5244504 MS.gene55750:intron
TCATCTACTAGAGCAGCAAC+CGG 0.568940 4.3:-5244804 None:intergenic
TGCATATAAAATCAAATACA+AGG 0.570871 4.3:+5244650 MS.gene55750:CDS
GATAAAGATCTCGAGGGATG+GGG 0.570941 4.3:+5244954 MS.gene55750:CDS
TGTGGTGAGTTTGATAATGC+CGG 0.578788 4.3:+5245748 MS.gene55750:CDS
CTTGGAGATTATGTTGATCG+TGG 0.584311 4.3:+5244594 MS.gene55750:CDS
ATCCACACTCATCATAGCAC+CGG 0.591401 4.3:-5245767 None:intergenic
GGCAATAACTCATCAAGACC+TGG 0.595098 4.3:+5245853 MS.gene55750:CDS
TATCAGGATCAGCCCACAGA+AGG 0.599205 4.3:-5244935 None:intergenic
CTGAAGTCTTCCGATAAGAA+GGG 0.604771 4.3:+5245817 MS.gene55750:CDS
TGATCCTGATAAAGATCTCG+AGG 0.605585 4.3:+5244947 MS.gene55750:CDS
ATAAGTAATTTGCTTCAGGT+GGG 0.616465 4.3:-5244569 None:intergenic
GAAGATCCTTTGCATGCATG+GGG 0.624730 4.3:+5244827 MS.gene55750:CDS
AAGCTTGTATCAGCGAAGAA+CGG 0.636419 4.3:+5243221 MS.gene55750:CDS
GTTTCTACGATGAGTGCAAG+AGG 0.643121 4.3:+5244730 MS.gene55750:CDS
AAGCTGACGAATATCAGCCT+CGG 0.647938 4.3:-5243270 None:intergenic
ACCATAAATACGATTGATGG+AGG 0.650130 4.3:-5244709 None:intergenic
GAGAACTTCTTTCTTCTCAG+GGG 0.674269 4.3:+5244672 MS.gene55750:CDS
TGCCGGTGCTATGATGAGTG+TGG 0.686901 4.3:+5245765 MS.gene55750:CDS
TTAAGGCTGTTCGAATACGG+GGG 0.692495 4.3:+5244543 MS.gene55750:CDS
TCTACGATGAGTGCAAGAGG+AGG 0.698302 4.3:+5244733 MS.gene55750:CDS
GGATGGGGAGAAAATGATCG+AGG 0.699695 4.3:+5244969 MS.gene55750:CDS
TTCTCTGCACCAAATTACTG+TGG 0.705308 4.3:+5245730 MS.gene55750:CDS
GATCCTGATAAAGATCTCGA+GGG 0.709098 4.3:+5244948 MS.gene55750:CDS
AAGATCCTTTGCATGCATGG+GGG 0.732102 4.3:+5244828 MS.gene55750:CDS
GAAGCAAGTTCATCTTACCG+AGG 0.743441 4.3:+5243253 MS.gene55750:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATTTTAATTTTTAATT+GGG + chr4.3:5243508-5243527 MS.gene55750:intron 0.0%
!!! TTTTAATTTTAATTTTTAAT+TGG + chr4.3:5243507-5243526 MS.gene55750:intron 0.0%
!! TTAAAAAGAAAAAAAAAAAG+AGG - chr4.3:5245511-5245530 None:intergenic 10.0%
!!! AACTCATAAATTTTAATTTT+AGG + chr4.3:5244114-5244133 MS.gene55750:intron 10.0%
!!! ACTCATAAATTTTAATTTTA+GGG + chr4.3:5244115-5244134 MS.gene55750:intron 10.0%
!!! TTTTTTTTTCTTTTTAATTG+CGG + chr4.3:5245514-5245533 MS.gene55750:intron 10.0%
!! ACAAGTTTAAAAACTATTAA+TGG + chr4.3:5246544-5246563 MS.gene55750:intron 15.0%
!! TAGAATTTATGTAATTGAAT+TGG + chr4.3:5243462-5243481 MS.gene55750:intron 15.0%
!! TATATAAATCTACACAAAAT+CGG - chr4.3:5246319-5246338 None:intergenic 15.0%
!! TATTTATAATGATAATTGAG+CGG + chr4.3:5245243-5245262 MS.gene55750:intron 15.0%
!!! ATGTTTCCTTTTAATATTTT+GGG + chr4.3:5245643-5245662 MS.gene55750:intron 15.0%
!!! CATTCATATTTTTAACAAAA+TGG - chr4.3:5244330-5244349 None:intergenic 15.0%
!! AAACTTATTGTATATACAGA+CGG - chr4.3:5245162-5245181 None:intergenic 20.0%
!! ATAAATCTATACACAAAATC+AGG - chr4.3:5246103-5246122 None:intergenic 20.0%
!! CTATTTATAAATTATAGCCA+AGG - chr4.3:5245137-5245156 None:intergenic 20.0%
!! TGCATATAAAATCAAATACA+AGG + chr4.3:5244650-5244669 MS.gene55750:CDS 20.0%
!!! CATTATATTTTTACCTTATG+AGG - chr4.3:5245886-5245905 None:intergenic 20.0%
!!! GATGTTTCCTTTTAATATTT+TGG + chr4.3:5245642-5245661 MS.gene55750:intron 20.0%
!!! TCATACACTTTTTTAATGAA+TGG + chr4.3:5243626-5243645 MS.gene55750:intron 20.0%
!!! TGTATTTGATTTTATATGCA+AGG - chr4.3:5244650-5244669 None:intergenic 20.0%
!!! TGTTTCCTTTTAATATTTTG+GGG + chr4.3:5245644-5245663 MS.gene55750:intron 20.0%
!!! TTTTAATTTTTAATTGGGGT+CGG + chr4.3:5243513-5243532 MS.gene55750:intron 20.0%
!!! TTTTTAAACTTGTCTTAACT+TGG - chr4.3:5246537-5246556 None:intergenic 20.0%
! AAAAAAAAAAAAGCTTCCTG+TGG + chr4.3:5246720-5246739 MS.gene55750:intron 25.0%
! AAAAAAAAAAAGCTTCCTGT+GGG + chr4.3:5246721-5246740 MS.gene55750:intron 25.0%
! AAAAAGAGGTAGTTAAACAA+AGG - chr4.3:5245497-5245516 None:intergenic 25.0%
! ACATAAATCTACACAAAATC+AGG - chr4.3:5246425-5246444 None:intergenic 25.0%
! GATTCTATGTATATGTGTAT+GGG + chr4.3:5245942-5245961 MS.gene55750:intron 25.0%
! TAACAAAATGGAAAAGCTTT+AGG - chr4.3:5244318-5244337 None:intergenic 25.0%
! TATGAAACTTCTGAATTCTT+TGG - chr4.3:5246226-5246245 None:intergenic 25.0%
! TGATTCTATGTATATGTGTA+TGG + chr4.3:5245941-5245960 MS.gene55750:intron 25.0%
! TGATTGCTTTAATTGTTTAC+CGG + chr4.3:5244785-5244804 MS.gene55750:CDS 25.0%
! TTAAAAACTTGGATCAGATA+CGG + chr4.3:5244865-5244884 MS.gene55750:CDS 25.0%
! TTATAAATTATAGCCAAGGA+TGG - chr4.3:5245133-5245152 None:intergenic 25.0%
! TTATGTAATTGAATTGGTAG+TGG + chr4.3:5243468-5243487 MS.gene55750:intron 25.0%
! TTGTGATATTTAATGAGTTC+TGG + chr4.3:5246897-5246916 MS.gene55750:intron 25.0%
!! GAAGCAAATTACTTATTTCT+TGG + chr4.3:5244576-5244595 MS.gene55750:CDS 25.0%
!! TTGGGTTTATCTCAAATTTT+TGG + chr4.3:5244012-5244031 MS.gene55750:intron 25.0%
!!! AAGATACCACAAATTTTGAT+AGG - chr4.3:5243353-5243372 None:intergenic 25.0%
!!! AAGCTTTTTTTTTTTTGGGT+GGG - chr4.3:5246716-5246735 None:intergenic 25.0%
!!! ACAGGAAGCTTTTTTTTTTT+TGG - chr4.3:5246721-5246740 None:intergenic 25.0%
!!! AGAAATAAGTAATTTGCTTC+AGG - chr4.3:5244576-5244595 None:intergenic 25.0%
!!! CAGGAAGCTTTTTTTTTTTT+GGG - chr4.3:5246720-5246739 None:intergenic 25.0%
!!! GTTTCCTTTTAATATTTTGG+GGG + chr4.3:5245645-5245664 MS.gene55750:intron 25.0%
!!! TATATTTTTACCTTATGAGG+TGG - chr4.3:5245883-5245902 None:intergenic 25.0%
!!! TTGAGTTGAATTTGTTTTTG+TGG + chr4.3:5243690-5243709 MS.gene55750:intron 25.0%
!!! TTGGACACTTTAATTTTGAT+GGG - chr4.3:5246574-5246593 None:intergenic 25.0%
!!! TTGTTTTTGTGGTTTTTGAT+AGG + chr4.3:5243701-5243720 MS.gene55750:intron 25.0%
!!! TTTAATTTTTAATTGGGGTC+GGG + chr4.3:5243514-5243533 MS.gene55750:intron 25.0%
!!! TTTGGACACTTTAATTTTGA+TGG - chr4.3:5246575-5246594 None:intergenic 25.0%
AAAATGGTGAATTGTGTCTA+TGG - chr4.3:5246625-5246644 None:intergenic 30.0%
AAACATCAGATCAGATTTAC+TGG - chr4.3:5245629-5245648 None:intergenic 30.0%
ACTTCAACACCTCATAAATA+TGG + chr4.3:5245441-5245460 MS.gene55750:intron 30.0%
AGAAGTTTCATAACTTCTAC+TGG + chr4.3:5246370-5246389 MS.gene55750:intron 30.0%
AGAATGATCCCATATTTATG+AGG - chr4.3:5245453-5245472 None:intergenic 30.0%
AGGTGTTTCATTTACATTTG+GGG + chr4.3:5244989-5245008 MS.gene55750:CDS 30.0%
ATACACAACATAATGAGACA+AGG - chr4.3:5244414-5244433 None:intergenic 30.0%
ATTCTATGTATATGTGCATG+GGG + chr4.3:5246153-5246172 MS.gene55750:intron 30.0%
CATGTTATCAACTTATCATC+AGG + chr4.3:5244284-5244303 MS.gene55750:intron 30.0%
CTTCAACACCTCATAAATAT+GGG + chr4.3:5245442-5245461 MS.gene55750:intron 30.0%
GAAACCATAAATACGATTGA+TGG - chr4.3:5244715-5244734 None:intergenic 30.0%
GATTCTATGTATATGTGCAT+GGG + chr4.3:5246152-5246171 MS.gene55750:intron 30.0%
TGATTCTATGTATATGTGCA+TGG + chr4.3:5246151-5246170 MS.gene55750:intron 30.0%
TTATATATTTGTCTGTGTGC+TGG + chr4.3:5245555-5245574 MS.gene55750:intron 30.0%
TTATTTGTGTTTCCACATTG+CGG + chr4.3:5243795-5243814 MS.gene55750:intron 30.0%
TTCTCCTGAACTTAAAAACT+TGG + chr4.3:5244854-5244873 MS.gene55750:CDS 30.0%
! AAGTTTCATGTCACTTAAGT+TGG + chr4.3:5246055-5246074 MS.gene55750:intron 30.0%
! GAGGTGTTTCATTTACATTT+GGG + chr4.3:5244988-5245007 MS.gene55750:CDS 30.0%
! GGTTTAAACAATTTGTTTGC+AGG + chr4.3:5244492-5244511 MS.gene55750:intron 30.0%
! GTTTTCTTCAGACAATTAAG+TGG + chr4.3:5243732-5243751 MS.gene55750:intron 30.0%
! TGGTTTTTGATAGGATTGTT+TGG + chr4.3:5243710-5243729 MS.gene55750:intron 30.0%
!! AATAAGTAATTTGCTTCAGG+TGG - chr4.3:5244573-5244592 None:intergenic 30.0%
!! ATAAGTAATTTGCTTCAGGT+GGG - chr4.3:5244572-5244591 None:intergenic 30.0%
!! ATTGCTTTAGAGAAACATCT+TGG + chr4.3:5246492-5246511 MS.gene55750:intron 30.0%
!! TTGCTTTAGAGAAACATCTT+GGG + chr4.3:5246493-5246512 MS.gene55750:intron 30.0%
!!! AGCTTTTTTTTTTTTGGGTG+GGG - chr4.3:5246715-5246734 None:intergenic 30.0%
!!! CACTTTTTTAATGAATGGCT+AGG + chr4.3:5243631-5243650 MS.gene55750:intron 30.0%
!!! GAAGCTTTTTTTTTTTTGGG+TGG - chr4.3:5246717-5246736 None:intergenic 30.0%
!!! TGATCCAAGTTTTTAAGTTC+AGG - chr4.3:5244861-5244880 None:intergenic 30.0%
!!! TTTTAATTTTAGGGATGCAG+TGG + chr4.3:5244124-5244143 MS.gene55750:intron 30.0%
AAAAAGAGATTCAACGTTCG+CGG + chr4.3:5246592-5246611 MS.gene55750:intron 35.0%
AAAAGCAAAATAGGACCTGA+AGG - chr4.3:5244444-5244463 None:intergenic 35.0%
ACAGTGGTCAAAAGCAAAAT+AGG - chr4.3:5244453-5244472 None:intergenic 35.0%
ACCATAAATACGATTGATGG+AGG - chr4.3:5244712-5244731 None:intergenic 35.0%
ACTAAACTGATTGACAACCA+AGG - chr4.3:5243895-5243914 None:intergenic 35.0%
AGTAAAGGATATGACAAAGC+TGG + chr4.3:5245299-5245318 MS.gene55750:intron 35.0%
AGTGTTAAGCACAAAGGAAA+GGG - chr4.3:5245420-5245439 None:intergenic 35.0%
ATATCCATCTTCTACAACCT+GGG - chr4.3:5245677-5245696 None:intergenic 35.0%
ATTGAAATCAACCAAGCTAC+AGG - chr4.3:5245086-5245105 None:intergenic 35.0%
CTAAACTGATTGACAACCAA+GGG - chr4.3:5243894-5243913 None:intergenic 35.0%
GAAGCTCCTATCAAAATTTG+TGG + chr4.3:5243344-5243363 MS.gene55750:CDS 35.0%
GAAGTTAGTGTTAAGCACAA+AGG - chr4.3:5245426-5245445 None:intergenic 35.0%
GAGAAAGACTACATGAGTAA+AGG + chr4.3:5245284-5245303 MS.gene55750:intron 35.0%
GTAAAGGATATGACAAAGCT+GGG + chr4.3:5245300-5245319 MS.gene55750:intron 35.0%
GTCATCTGTAAGTGTTAAAC+TGG + chr4.3:5244471-5244490 MS.gene55750:intron 35.0%
TAAACTGATTGACAACCAAG+GGG - chr4.3:5243893-5243912 None:intergenic 35.0%
TAGTGTTAAGCACAAAGGAA+AGG - chr4.3:5245421-5245440 None:intergenic 35.0%
TCAAACTCACCACAGTAATT+TGG - chr4.3:5245742-5245761 None:intergenic 35.0%
TTAACACTTACAGATGACAG+TGG - chr4.3:5244469-5244488 None:intergenic 35.0%
TTCTATGTATATGTGCATGG+GGG + chr4.3:5246154-5246173 MS.gene55750:intron 35.0%
TTCTTTCTTCTGTGAATTCC+CGG + chr4.3:5243934-5243953 MS.gene55750:intron 35.0%
TTGAAATCAACCAAGCTACA+GGG - chr4.3:5245085-5245104 None:intergenic 35.0%
TTGTGTATGTATCTTCCTTC+AGG + chr4.3:5244426-5244445 MS.gene55750:intron 35.0%
! ACCATTTTCTTGTGGTTTCT+AGG + chr4.3:5246637-5246656 MS.gene55750:intron 35.0%
! ACGGGTCGACTAAAATTTTT+AGG + chr4.3:5246769-5246788 MS.gene55750:intron 35.0%
! AGGGGTATATAAGTGAGAAA+TGG + chr4.3:5246657-5246676 MS.gene55750:intron 35.0%
! CACAATTCACCATTTTCTTG+TGG + chr4.3:5246629-5246648 MS.gene55750:intron 35.0%
! CCATTTTCTTGTGGTTTCTA+GGG + chr4.3:5246638-5246657 MS.gene55750:intron 35.0%
! CGAGGTGTTTCATTTACATT+TGG + chr4.3:5244987-5245006 MS.gene55750:CDS 35.0%
! GCTTCAAGTTCAAGAAGATT+AGG - chr4.3:5243329-5243348 None:intergenic 35.0%
! TCTTAACTTGGTAAGAGCAT+AGG - chr4.3:5246525-5246544 None:intergenic 35.0%
! TTTAATTAAAGCGGCACTGA+GGG + chr4.3:5243552-5243571 MS.gene55750:intron 35.0%
! TTTTGCACATACTGTGGTTT+TGG + chr4.3:5244221-5244240 MS.gene55750:intron 35.0%
!! AGTAAGAGTGTGTTTGGTTT+TGG - chr4.3:5244258-5244277 None:intergenic 35.0%
!! CATTTTCTTGTGGTTTCTAG+GGG + chr4.3:5246639-5246658 MS.gene55750:intron 35.0%
!! CTCTAAAGTAAGAGTGTGTT+TGG - chr4.3:5244264-5244283 None:intergenic 35.0%
!! TGCATGTTTGATTTGACGTT+TGG + chr4.3:5244154-5244173 MS.gene55750:intron 35.0%
!! TTTTAATTAAAGCGGCACTG+AGG + chr4.3:5243551-5243570 MS.gene55750:intron 35.0%
!!! CTTTTAAGGCTGTTCGAATA+CGG + chr4.3:5244540-5244559 MS.gene55750:CDS 35.0%
!!! TTTAGCTTTTGCACATACTG+TGG + chr4.3:5244215-5244234 MS.gene55750:intron 35.0%
!!! TTTTAAGGCTGTTCGAATAC+GGG + chr4.3:5244541-5244560 MS.gene55750:CDS 35.0%
!!! TTTTTTTTTTTGGGTGGGGA+GGG - chr4.3:5246711-5246730 None:intergenic 35.0%
!!! TTTTTTTTTTTTGGGTGGGG+AGG - chr4.3:5246712-5246731 None:intergenic 35.0%
AAAAGAGATTCAACGTTCGC+GGG + chr4.3:5246593-5246612 MS.gene55750:intron 40.0%
AAAAGCCCACTTATCTAACG+TGG + chr4.3:5244090-5244109 MS.gene55750:intron 40.0%
AAACCCAAAAACACACCACA+AGG - chr4.3:5244000-5244019 None:intergenic 40.0%
AAAGTCCCAGATCATGGTTT+GGG + chr4.3:5244177-5244196 MS.gene55750:intron 40.0%
AAGAAGGGCAAAGTTGGATT+TGG + chr4.3:5245832-5245851 MS.gene55750:CDS 40.0%
AAGCTTGTATCAGCGAAGAA+CGG + chr4.3:5243221-5243240 MS.gene55750:CDS 40.0%
ACCCTGGAATAACAGGTATA+TGG - chr4.3:5246923-5246942 None:intergenic 40.0%
ACTGAAGTCTTCCGATAAGA+AGG + chr4.3:5245816-5245835 MS.gene55750:CDS 40.0%
AGAAATGGCTATGCTCTTTG+GGG + chr4.3:5246672-5246691 MS.gene55750:intron 40.0%
AGAAGATCCTTTGCATGCAT+GGG + chr4.3:5244826-5244845 MS.gene55750:CDS 40.0%
AGACAAGGCAATCAAACTAG+GGG - chr4.3:5244399-5244418 None:intergenic 40.0%
AGGAGAACTTCTTTCTTCTC+AGG + chr4.3:5244670-5244689 MS.gene55750:CDS 40.0%
AGTATCTCTTCCTGTTGAGA+TGG + chr4.3:5243863-5243882 MS.gene55750:intron 40.0%
AGTTGCCACGTTAGATAAGT+GGG - chr4.3:5244098-5244117 None:intergenic 40.0%
ATATACCTGTTATTCCAGGG+TGG + chr4.3:5246922-5246941 MS.gene55750:intron 40.0%
ATCTCAACAGGAAGAGATAC+TGG - chr4.3:5243864-5243883 None:intergenic 40.0%
ATGCACAACACGACTGAATA+TGG + chr4.3:5245379-5245398 MS.gene55750:intron 40.0%
ATTATAGCCAAGGATGGCAT+TGG - chr4.3:5245127-5245146 None:intergenic 40.0%
CAGTATGTTCCTGACATAAG+GGG - chr4.3:5243977-5243996 None:intergenic 40.0%
CATATCCATCTTCTACAACC+TGG - chr4.3:5245678-5245697 None:intergenic 40.0%
CATGATCTGGCACATCAATA+GGG - chr4.3:5244902-5244921 None:intergenic 40.0%
CCCTAGAAACCACAAGAAAA+TGG - chr4.3:5246641-5246660 None:intergenic 40.0%
CGTATTCGAACAGCCTTAAA+AGG - chr4.3:5244542-5244561 None:intergenic 40.0%
CTGAAGTCTTCCGATAAGAA+GGG + chr4.3:5245817-5245836 MS.gene55750:CDS 40.0%
CTTGGAGATTATGTTGATCG+TGG + chr4.3:5244594-5244613 MS.gene55750:CDS 40.0%
GAGAAATGGCTATGCTCTTT+GGG + chr4.3:5246671-5246690 MS.gene55750:intron 40.0%
GAGAACTTCTTTCTTCTCAG+GGG + chr4.3:5244672-5244691 MS.gene55750:CDS 40.0%
GAGACAAGGCAATCAAACTA+GGG - chr4.3:5244400-5244419 None:intergenic 40.0%
GATCCTGATAAAGATCTCGA+GGG + chr4.3:5244948-5244967 MS.gene55750:CDS 40.0%
GCAGCCCCCAAAATATTAAA+AGG - chr4.3:5245652-5245671 None:intergenic 40.0%
GCAGTATGTTCCTGACATAA+GGG - chr4.3:5243978-5243997 None:intergenic 40.0%
GCCATATACCTGTTATTCCA+GGG + chr4.3:5246919-5246938 MS.gene55750:intron 40.0%
GCCTCCATCAATCGTATTTA+TGG + chr4.3:5244708-5244727 MS.gene55750:CDS 40.0%
GCCTTAAAAGGTCTGAAAAC+TGG - chr4.3:5244530-5244549 None:intergenic 40.0%
GGAGAACTTCTTTCTTCTCA+GGG + chr4.3:5244671-5244690 MS.gene55750:CDS 40.0%
GTATCTCTTCCTGTTGAGAT+GGG + chr4.3:5243864-5243883 MS.gene55750:intron 40.0%
GTGTTAAGCACAAAGGAAAG+GGG - chr4.3:5245419-5245438 None:intergenic 40.0%
TAGTCGACCCGTATACATAA+GGG - chr4.3:5246761-5246780 None:intergenic 40.0%
TATACCTGTTATTCCAGGGT+GGG + chr4.3:5246923-5246942 MS.gene55750:intron 40.0%
TATCGGAAGACTTCAGTATC+TGG - chr4.3:5245813-5245832 None:intergenic 40.0%
TCCAACTTTGCCCTTCTTAT+CGG - chr4.3:5245830-5245849 None:intergenic 40.0%
TGAGAAATGGCTATGCTCTT+TGG + chr4.3:5246670-5246689 MS.gene55750:intron 40.0%
TGAGACAAGGCAATCAAACT+AGG - chr4.3:5244401-5244420 None:intergenic 40.0%
TGATAAAGATCTCGAGGGAT+GGG + chr4.3:5244953-5244972 MS.gene55750:CDS 40.0%
TGATCCTGATAAAGATCTCG+AGG + chr4.3:5244947-5244966 MS.gene55750:CDS 40.0%
TGCTTCTTTCGACACTTCTT+TGG + chr4.3:5243663-5243682 MS.gene55750:intron 40.0%
TTAGTCGACCCGTATACATA+AGG - chr4.3:5246762-5246781 None:intergenic 40.0%
TTCCGTAAACCAGATACTCA+AGG - chr4.3:5244365-5244384 None:intergenic 40.0%
TTCTCTGCACCAAATTACTG+TGG + chr4.3:5245730-5245749 MS.gene55750:CDS 40.0%
! ATTGGGATTTTGCTTCGCTT+AGG + chr4.3:5245581-5245600 MS.gene55750:intron 40.0%
! ATTTACATTTGGGGCTGACA+AGG + chr4.3:5244998-5245017 MS.gene55750:CDS 40.0%
! CACCTTGAGTATCTGGTTTA+CGG + chr4.3:5244360-5244379 MS.gene55750:intron 40.0%
! CACGACTGAATATGGTTTTC+TGG + chr4.3:5245387-5245406 MS.gene55750:intron 40.0%
! GACTGAATATGGTTTTCTGG+CGG + chr4.3:5245390-5245409 MS.gene55750:intron 40.0%
! GCCAGTTTTCAGACCTTTTA+AGG + chr4.3:5244526-5244545 MS.gene55750:CDS 40.0%
! GCGAACGTTGAATCTCTTTT+TGG - chr4.3:5246593-5246612 None:intergenic 40.0%
! TCAGCTTTGTACTTCTGCTA+AGG + chr4.3:5243286-5243305 MS.gene55750:CDS 40.0%
! TTGGGATTTTGCTTCGCTTA+GGG + chr4.3:5245582-5245601 MS.gene55750:intron 40.0%
! TTTAAGGCTGTTCGAATACG+GGG + chr4.3:5244542-5244561 MS.gene55750:CDS 40.0%
! TTTTGCCCAAACCATGATCT+GGG - chr4.3:5244185-5244204 None:intergenic 40.0%
!! TCAGTTTAGTTTGAAACCCC+TGG + chr4.3:5243905-5243924 MS.gene55750:intron 40.0%
!! TGTGGTGAGTTTGATAATGC+CGG + chr4.3:5245748-5245767 MS.gene55750:CDS 40.0%
!!! GTGTGTTTGGTTTTGGCATT+CGG - chr4.3:5244251-5244270 None:intergenic 40.0%
!!! GTTTTTTGCCAAACGTAAGC+TGG + chr4.3:5245699-5245718 MS.gene55750:CDS 40.0%
!!! TTTTTTTTTTGGGTGGGGAG+GGG - chr4.3:5246710-5246729 None:intergenic 40.0%
AAAGGTCTGAAAACTGGCCA+TGG - chr4.3:5244524-5244543 None:intergenic 45.0%
AAGATCCTTTGCATGCATGG+GGG + chr4.3:5244828-5244847 MS.gene55750:CDS 45.0%
AAGCTACAGGGTTCATTACC+TGG - chr4.3:5245073-5245092 None:intergenic 45.0%
AAGCTGACGAATATCAGCCT+CGG - chr4.3:5243273-5243292 None:intergenic 45.0%
AATTGAGCGGTGAGACTTGA+AGG + chr4.3:5245256-5245275 MS.gene55750:intron 45.0%
ACAAGGCAATCAAACTAGGG+GGG - chr4.3:5244397-5244416 None:intergenic 45.0%
AGAAGAAAGAAGCTCGACCA+GGG - chr4.3:5243925-5243944 None:intergenic 45.0%
AGGTAATGAACCCTGTAGCT+TGG + chr4.3:5245072-5245091 MS.gene55750:intron 45.0%
ATCCACACTCATCATAGCAC+CGG - chr4.3:5245770-5245789 None:intergenic 45.0%
CATCCCTCGAGATCTTTATC+AGG - chr4.3:5244954-5244973 None:intergenic 45.0%
CCATGATCTGGCACATCAAT+AGG - chr4.3:5244903-5244922 None:intergenic 45.0%
CCTATTGATGTGCCAGATCA+TGG + chr4.3:5244900-5244919 MS.gene55750:CDS 45.0%
CTGAGGCTGTATGAGATAGA+AGG + chr4.3:5243836-5243855 MS.gene55750:intron 45.0%
CTGATAAAGATCTCGAGGGA+TGG + chr4.3:5244952-5244971 MS.gene55750:CDS 45.0%
CTTCTGTGAATTCCCGGTTT+AGG + chr4.3:5243940-5243959 MS.gene55750:intron 45.0%
GAAAGTCCCAGATCATGGTT+TGG + chr4.3:5244176-5244195 MS.gene55750:intron 45.0%
GAAGATCCTTTGCATGCATG+GGG + chr4.3:5244827-5244846 MS.gene55750:CDS 45.0%
GAAGCAAGTTCATCTTACCG+AGG + chr4.3:5243253-5243272 MS.gene55750:CDS 45.0%
GACAAGGCAATCAAACTAGG+GGG - chr4.3:5244398-5244417 None:intergenic 45.0%
GAGAAGATCCTTTGCATGCA+TGG + chr4.3:5244825-5244844 MS.gene55750:CDS 45.0%
GAGTTGCCACGTTAGATAAG+TGG - chr4.3:5244099-5244118 None:intergenic 45.0%
GATAAAGATCTCGAGGGATG+GGG + chr4.3:5244954-5244973 MS.gene55750:CDS 45.0%
GGCAATAACTCATCAAGACC+TGG + chr4.3:5245853-5245872 MS.gene55750:CDS 45.0%
GGCAGTATGTTCCTGACATA+AGG - chr4.3:5243979-5243998 None:intergenic 45.0%
GGCCATATACCTGTTATTCC+AGG + chr4.3:5246918-5246937 MS.gene55750:intron 45.0%
GTTTCTACGATGAGTGCAAG+AGG + chr4.3:5244730-5244749 MS.gene55750:CDS 45.0%
GTTTGGAAAGTCCCAGATCA+TGG + chr4.3:5244171-5244190 MS.gene55750:intron 45.0%
TACAGTCACCAGCTTACGTT+TGG - chr4.3:5245710-5245729 None:intergenic 45.0%
TCATCTACTAGAGCAGCAAC+CGG - chr4.3:5244807-5244826 None:intergenic 45.0%
TCCGATAAGAAGGGCAAAGT+TGG + chr4.3:5245826-5245845 MS.gene55750:CDS 45.0%
TCTGATATGTAGAGCTCACC+AGG + chr4.3:5245052-5245071 MS.gene55750:CDS 45.0%
TGATTGACCAATGCCATCCT+TGG + chr4.3:5245117-5245136 MS.gene55750:intron 45.0%
TGTGTTTCCACATTGCGGAT+GGG + chr4.3:5243800-5243819 MS.gene55750:intron 45.0%
TTAAGGCTGTTCGAATACGG+GGG + chr4.3:5244543-5244562 MS.gene55750:CDS 45.0%
TTGGCCTGTTGACATTTGTG+CGG + chr4.3:5244031-5244050 MS.gene55750:intron 45.0%
TTGTGTTTCCACATTGCGGA+TGG + chr4.3:5243799-5243818 MS.gene55750:intron 45.0%
TTGTTTGCAGGAGATGTCCA+TGG + chr4.3:5244504-5244523 MS.gene55750:intron 45.0%
! ACCAGATACTCAAGGTGTCA+AGG - chr4.3:5244357-5244376 None:intergenic 45.0%
! ACTGCCTTGTGGTGTGTTTT+TGG + chr4.3:5243993-5244012 MS.gene55750:intron 45.0%
! CCAGATACTCAAGGTGTCAA+GGG - chr4.3:5244356-5244375 None:intergenic 45.0%
! CTGCCTTGTGGTGTGTTTTT+GGG + chr4.3:5243994-5244013 MS.gene55750:intron 45.0%
! CTTTTGCCCAAACCATGATC+TGG - chr4.3:5244186-5244205 None:intergenic 45.0%
! GGAGGTATAATGTTCGTCTC+TGG + chr4.3:5244751-5244770 MS.gene55750:CDS 45.0%
! TAAGCACATGCTTTGAGCAG+AGG + chr4.3:5245220-5245239 MS.gene55750:intron 45.0%
! TGGGATTTTGCTTCGCTTAG+GGG + chr4.3:5245583-5245602 MS.gene55750:intron 45.0%
! TGTCTGTGTGCTGGTGTATT+GGG + chr4.3:5245564-5245583 MS.gene55750:intron 45.0%
! TTGTCTGTGTGCTGGTGTAT+TGG + chr4.3:5245563-5245582 MS.gene55750:intron 45.0%
!!! TTTTTTTTTGGGTGGGGAGG+GGG - chr4.3:5246709-5246728 None:intergenic 45.0%
!!! TTAATTTTAATTTTTAATTG+GGG + chr4.3:5243509-5243528 MS.gene55750:intron 5.0%
!!! TTTTTTTTTTTTAATTAAAG+CGG + chr4.3:5243543-5243562 MS.gene55750:intron 5.0%
AAAGTCCCCCATGCATGCAA+AGG - chr4.3:5244836-5244855 None:intergenic 50.0%
AAGGGGTTTCCCATCTCAAC+AGG - chr4.3:5243876-5243895 None:intergenic 50.0%
ACCTGGAACTCCACCTCATA+AGG + chr4.3:5245870-5245889 MS.gene55750:CDS 50.0%
ACCTTATGAGGTGGAGTTCC+AGG - chr4.3:5245874-5245893 None:intergenic 50.0%
AGTGCCGCACAAATGTCAAC+AGG - chr4.3:5244038-5244057 None:intergenic 50.0%
CAGAAGAAAGAAGCTCGACC+AGG - chr4.3:5243926-5243945 None:intergenic 50.0%
CCCTTGACACCTTGAGTATC+TGG + chr4.3:5244353-5244372 MS.gene55750:intron 50.0%
CTGTGAATTCCCGGTTTAGG+TGG + chr4.3:5243943-5243962 MS.gene55750:intron 50.0%
GAAGAAAGAAGCTCGACCAG+GGG - chr4.3:5243924-5243943 None:intergenic 50.0%
GGATGGGGAGAAAATGATCG+AGG + chr4.3:5244969-5244988 MS.gene55750:CDS 50.0%
GTCAGGAACATACTGCCTTG+TGG + chr4.3:5243982-5244001 MS.gene55750:intron 50.0%
GTGTTTCCACATTGCGGATG+GGG + chr4.3:5243801-5243820 MS.gene55750:intron 50.0%
GTTGACATTTGTGCGGCACT+CGG + chr4.3:5244038-5244057 MS.gene55750:intron 50.0%
TATCAGGATCAGCCCACAGA+AGG - chr4.3:5244938-5244957 None:intergenic 50.0%
TCCCGGTTTAGGTGGTATCT+GGG + chr4.3:5243951-5243970 MS.gene55750:intron 50.0%
TCTACGATGAGTGCAAGAGG+AGG + chr4.3:5244733-5244752 MS.gene55750:CDS 50.0%
TCTTCCCACCCTGGAATAAC+AGG - chr4.3:5246930-5246949 None:intergenic 50.0%
TGGGGGGTTATAATGCACTG+AGG + chr4.3:5243819-5243838 MS.gene55750:intron 50.0%
TGTGCGGCACTCGGTTTAAA+TGG + chr4.3:5244047-5244066 MS.gene55750:intron 50.0%
TGTTGAGATGGGAAACCCCT+TGG + chr4.3:5243875-5243894 MS.gene55750:intron 50.0%
TGTTTCCACATTGCGGATGG+GGG + chr4.3:5243802-5243821 MS.gene55750:intron 50.0%
TTCCCGGTTTAGGTGGTATC+TGG + chr4.3:5243950-5243969 MS.gene55750:intron 50.0%
! GATTGATGGAGGCGCATTCA+TGG - chr4.3:5244701-5244720 None:intergenic 50.0%
ACCCCGGCCCTTATGTATAC+GGG + chr4.3:5246751-5246770 MS.gene55750:intron 55.0%
ACCCGTATACATAAGGGCCG+GGG - chr4.3:5246755-5246774 None:intergenic 55.0%
ATAACCCCCCATCCGCAATG+TGG - chr4.3:5243810-5243829 None:intergenic 55.0%
CCTTCTCTGCGACCTTCTGT+GGG + chr4.3:5244923-5244942 MS.gene55750:CDS 55.0%
CGACCCGTATACATAAGGGC+CGG - chr4.3:5246757-5246776 None:intergenic 55.0%
GACCCCGGCCCTTATGTATA+CGG + chr4.3:5246750-5246769 MS.gene55750:intron 55.0%
GACCCGTATACATAAGGGCC+GGG - chr4.3:5246756-5246775 None:intergenic 55.0%
GCCCAGATACCACCTAAACC+GGG - chr4.3:5243955-5243974 None:intergenic 55.0%
GCGTCCCAGGTTGTAGAAGA+TGG + chr4.3:5245670-5245689 MS.gene55750:intron 55.0%
GGCCCAGATACCACCTAAAC+CGG - chr4.3:5243956-5243975 None:intergenic 55.0%
GTATCTGGGCCCCTTATGTC+AGG + chr4.3:5243965-5243984 MS.gene55750:intron 55.0%
GTTTCCACATTGCGGATGGG+GGG + chr4.3:5243803-5243822 MS.gene55750:intron 55.0%
TCGCAGAGAAGGCCATGATC+TGG - chr4.3:5244915-5244934 None:intergenic 55.0%
!! TGCCGGTGCTATGATGAGTG+TGG + chr4.3:5245765-5245784 MS.gene55750:CDS 55.0%
CCCACAGAAGGTCGCAGAGA+AGG - chr4.3:5244926-5244945 None:intergenic 60.0%
GCCTTCTCTGCGACCTTCTG+TGG + chr4.3:5244922-5244941 MS.gene55750:CDS 60.0%
TCCTGTGGGAGAAGTGACCC+CGG + chr4.3:5246735-5246754 MS.gene55750:intron 60.0%
!! TATTTTGGGGGCTGCGTCCC+AGG + chr4.3:5245657-5245676 MS.gene55750:intron 60.0%
GCCGGGGTCACTTCTCCCAC+AGG - chr4.3:5246739-5246758 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 5243188 5246954 5243188 ID=MS.gene55750
chr4.3 mRNA 5243188 5246954 5243188 ID=MS.gene55750.t1;Parent=MS.gene55750
chr4.3 exon 5243188 5243365 5243188 ID=MS.gene55750.t1.exon1;Parent=MS.gene55750.t1
chr4.3 CDS 5243188 5243365 5243188 ID=cds.MS.gene55750.t1;Parent=MS.gene55750.t1
chr4.3 exon 5244514 5245073 5244514 ID=MS.gene55750.t1.exon2;Parent=MS.gene55750.t1
chr4.3 CDS 5244514 5245073 5244514 ID=cds.MS.gene55750.t1;Parent=MS.gene55750.t1
chr4.3 exon 5245679 5245891 5245679 ID=MS.gene55750.t1.exon3;Parent=MS.gene55750.t1
chr4.3 CDS 5245679 5245891 5245679 ID=cds.MS.gene55750.t1;Parent=MS.gene55750.t1
chr4.3 exon 5246940 5246954 5246940 ID=MS.gene55750.t1.exon4;Parent=MS.gene55750.t1
chr4.3 CDS 5246940 5246954 5246940 ID=cds.MS.gene55750.t1;Parent=MS.gene55750.t1
Gene Sequence

>MS.gene55750

ATGGATGATACGGTGCTTGATGATATCATAAAGAAGCTTGTATCAGCGAAGAACGGAAGAACAACGAAGCAAGTTCATCTTACCGAGGCTGATATTCGTCAGCTTTGTACTTCTGCTAAGGAGATCTTTCTCAGTCAACCTAATCTTCTTGAACTTGAAGCTCCTATCAAAATTTGTGGTATCTTTCTTTTTTCTTTTCAATTAGCAATTATTATAATCTTGTTTCTTTGTGCTGATTATTATAATTCATTTTTACTCGTAATCTTCATTTTGTTAGAATTTATGTAATTGAATTGGTAGTGGCACGCAGTTCTGTTAATTTTAATTTTAATTTTTAATTGGGGTCGGGTGATTTTTTTTTTTTTTTAATTAAAGCGGCACTGAGGGTAGTTGAACTCGTGAGCTCTTACTTCTGAACGCATAATTTCTGTTAATAGATCATACACTTTTTTAATGAATGGCTAGGTTTTTGTTATGCTTCTTTCGACACTTCTTTGGTAGCTTGAGTTGAATTTGTTTTTGTGGTTTTTGATAGGATTGTTTGGTTTTCTTCAGACAATTAAGTGGTTTTCTGCACGACATCATTTCAAATAAGTTTCTTGTTTAATTATTTGTGTTTCCACATTGCGGATGGGGGGTTATAATGCACTGAGGCTGTATGAGATAGAAGGAGCCAGTATCTCTTCCTGTTGAGATGGGAAACCCCTTGGTTGTCAATCAGTTTAGTTTGAAACCCCTGGTCGAGCTTCTTTCTTCTGTGAATTCCCGGTTTAGGTGGTATCTGGGCCCCTTATGTCAGGAACATACTGCCTTGTGGTGTGTTTTTGGGTTTATCTCAAATTTTTGGCCTGTTGACATTTGTGCGGCACTCGGTTTAAATGGTCGATACTTGTAAACATTTTAAAAGCCCACTTATCTAACGTGGCAACTCATAAATTTTAATTTTAGGGATGCAGTGGTATTTAGTGCATGTTTGATTTGACGTTTGGAAAGTCCCAGATCATGGTTTGGGCAAAAGCTTGTCTCTTTTAGCTTTTGCACATACTGTGGTTTTGGAGTTCCGAATGCCAAAACCAAACACACTCTTACTTTAGAGCATGTTATCAACTTATCATCAGGTTTTCTTACCTAAAGCTTTTCCATTTTGTTAAAAATATGAATGTTACCCTTGACACCTTGAGTATCTGGTTTACGGAATTAAATATTCCCCCCTAGTTTGATTGCCTTGTCTCATTATGTTGTGTATGTATCTTCCTTCAGGTCCTATTTTGCTTTTGACCACTGTCATCTGTAAGTGTTAAACTGGTTTAAACAATTTGTTTGCAGGAGATGTCCATGGCCAGTTTTCAGACCTTTTAAGGCTGTTCGAATACGGGGGATACCCACCTGAAGCAAATTACTTATTTCTTGGAGATTATGTTGATCGTGGTAAGCAGAGCATAGAGACAATATGCTTGCTCCTTGCATATAAAATCAAATACAAGGAGAACTTCTTTCTTCTCAGGGGCAACCATGAATGCGCCTCCATCAATCGTATTTATGGTTTCTACGATGAGTGCAAGAGGAGGTATAATGTTCGTCTCTGGAAGACGTTTACTGATTGCTTTAATTGTTTACCGGTTGCTGCTCTAGTAGATGAGAAGATCCTTTGCATGCATGGGGGACTTTCTCCTGAACTTAAAAACTTGGATCAGATACGGAATATTGCTCGCCCTATTGATGTGCCAGATCATGGCCTTCTCTGCGACCTTCTGTGGGCTGATCCTGATAAAGATCTCGAGGGATGGGGAGAAAATGATCGAGGTGTTTCATTTACATTTGGGGCTGACAAGGTTGTTGAGTTTCTTGAGCATCATGATCTTGATCTGATATGTAGAGCTCACCAGGTAATGAACCCTGTAGCTTGGTTGATTTCAATGATTTTATTCTTGATTGACCAATGCCATCCTTGGCTATAATTTATAAATAGTACCGTCTGTATATACAATAAGTTTGAAATTTACTGATTATTGCTCAAATTGTTTTAAAAAAATAAGCACATGCTTTGAGCAGAGGTATTTATAATGATAATTGAGCGGTGAGACTTGAAGGAATAAGAGAAAGACTACATGAGTAAAGGATATGACAAAGCTGGGTTTTAAGACAGACAAATTAGTTACTATTGTAAAGTCTTGTTAATTTATGATTTTTAATGCACAACACGACTGAATATGGTTTTCTGGCGGCTTCCCCTTTCCTTTGTGCTTAACACTAACTTCAACACCTCATAAATATGGGATCATTCTTATTTATGTTCAATTGACGATCCTTTGTTTAACTACCTCTTTTTTTTTTTCTTTTTAATTGCGGATGTCTTTGTATACTGTATTATATATTTGTCTGTGTGCTGGTGTATTGGGATTTTGCTTCGCTTAGGGGTCTTAATTCTTTTTAATAAACCAGTAAATCTGATCTGATGTTTCCTTTTAATATTTTGGGGGCTGCGTCCCAGGTTGTAGAAGATGGATATGAGTTTTTTGCCAAACGTAAGCTGGTGACTGTATTCTCTGCACCAAATTACTGTGGTGAGTTTGATAATGCCGGTGCTATGATGAGTGTGGATGACTCATTGACATGCTCTTTCCAGATACTGAAGTCTTCCGATAAGAAGGGCAAAGTTGGATTTGGCAATAACTCATCAAGACCTGGAACTCCACCTCATAAGGTAAAAATATAATGATTGTTATGCATGTACTTGTTCGTTAAAACACACGTGATTCTATGTATATGTGTATGGGTGTCTATGTATTGCATGTTTAAATGCATGTCATAAACTTGAATTATAATTAAAGAAGTCAGAAGTTTCATAACTTCAACTAGCAAATATGAAGTTTCATGTCACTTAAGTTGGTTATTGAACATATGATGATATGCCTGATTTTGTGTATAGATTTATATATCATTTTAAGCACTAAGACATTATTTGATTCTATGTATATGTGCATGGGGGTCTATGTATTGCATGTTTAAATGCATAATATAAACTTGAGTTATAACCAAAGAATTCAGAAGTTTCATAACTTCAACTAGTATTAGCAAATATGAAGTTTCATGTCACTTAAGTTGGTTATTGAACACATGATGATATGCCGATTTTGTGTAGATTTATATATCATATTAAGCATCAAGACATCAAAGAAGTCAGAAGTTTCATAACTTCTACTGGTATTGTCGTATTGAACATATAATGATATACCTGATTTTGTGTAGATTTATGTATCATTTTAAGTACTAAGACATGATACAGATAATTCGTTCGAAGTGCATTGCTTTAGAGAAACATCTTGGGTGAAATCCTATGCTCTTACCAAGTTAAGACAAGTTTAAAAACTATTAATGGTTTTCCCATCAAAATTAAAGTGTCCAAAAAGAGATTCAACGTTCGCGGGCATTAGCCATAGACACAATTCACCATTTTCTTGTGGTTTCTAGGGGTATATAAGTGAGAAATGGCTATGCTCTTTGGGGCAATTCTATCTCCCCCTCCCCACCCAAAAAAAAAAAAGCTTCCTGTGGGAGAAGTGACCCCGGCCCTTATGTATACGGGTCGACTAAAATTTTTAGGACTTCATTTATTTACTTTGTAAAATTACTTTAACTGTTTGTTTATAAAAGCATGAGAAAATTGACTTGCTACTTTCTTTTGATTGAATCACATGCTGCATATCTTTTGTGATATTTAATGAGTTCTGGCCATATACCTGTTATTCCAGGGTGGGAAGAATTAA
Protein sequence

>MS.gene55750.t1

MDDTVLDDIIKKLVSAKNGRTTKQVHLTEADIRQLCTSAKEIFLSQPNLLELEAPIKICGDVHGQFSDLLRLFEYGGYPPEANYLFLGDYVDRGKQSIETICLLLAYKIKYKENFFLLRGNHECASINRIYGFYDECKRRYNVRLWKTFTDCFNCLPVAALVDEKILCMHGGLSPELKNLDQIRNIARPIDVPDHGLLCDLLWADPDKDLEGWGENDRGVSFTFGADKVVEFLEHHDLDLICRAHQVVEDGYEFFAKRKLVTVFSAPNYCGEFDNAGAMMSVDDSLTCSFQILKSSDKKGKVGFGNNSSRPGTPPHKGGKN