Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56547.t1 | XP_013456736.1 | 94.9 | 767 | 37 | 1 | 1 | 765 | 20 | 786 | 0.00E+00 | 1270 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56547.t1 | Q9SA60 | 64.2 | 743 | 257 | 4 | 29 | 764 | 52 | 792 | 2.4e-232 | 806.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56547.t1 | A0A072UM39 | 94.9 | 767 | 37 | 1 | 1 | 765 | 20 | 786 | 0.0e+00 | 1270.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049271 | MS.gene56547 | 0.804349 | 2.25E-49 | -1.69E-46 |
| MS.gene049404 | MS.gene56547 | 0.803374 | 3.59E-49 | -1.69E-46 |
| MS.gene049666 | MS.gene56547 | 0.8016 | 8.34E-49 | -1.69E-46 |
| MS.gene049824 | MS.gene56547 | 0.802316 | 5.94E-49 | -1.69E-46 |
| MS.gene049850 | MS.gene56547 | 0.820934 | 5.28E-53 | -1.69E-46 |
| MS.gene049873 | MS.gene56547 | 0.805953 | 1.04E-49 | -1.69E-46 |
| MS.gene050355 | MS.gene56547 | 0.806413 | 8.33E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene56547 | 0.838139 | 3.43E-57 | -1.69E-46 |
| MS.gene051279 | MS.gene56547 | 0.816538 | 5.25E-52 | -1.69E-46 |
| MS.gene051719 | MS.gene56547 | 0.817251 | 3.63E-52 | -1.69E-46 |
| MS.gene051720 | MS.gene56547 | 0.81841 | 1.99E-52 | -1.69E-46 |
| MS.gene051744 | MS.gene56547 | 0.834419 | 3.03E-56 | -1.69E-46 |
| MS.gene051957 | MS.gene56547 | 0.800544 | 1.37E-48 | -1.69E-46 |
| MS.gene052582 | MS.gene56547 | 0.833955 | 3.96E-56 | -1.69E-46 |
| MS.gene052584 | MS.gene56547 | 0.842518 | 2.46E-58 | -1.69E-46 |
| MS.gene053226 | MS.gene56547 | 0.851435 | 8.89E-61 | -1.69E-46 |
| MS.gene053599 | MS.gene56547 | 0.805017 | 1.64E-49 | -1.69E-46 |
| MS.gene053998 | MS.gene56547 | 0.809634 | 1.72E-50 | -1.69E-46 |
| MS.gene05415 | MS.gene56547 | 0.800529 | 1.38E-48 | -1.69E-46 |
| MS.gene054651 | MS.gene56547 | 0.827339 | 1.65E-54 | -1.69E-46 |
| MS.gene055466 | MS.gene56547 | 0.807022 | 6.19E-50 | -1.69E-46 |
| MS.gene055778 | MS.gene56547 | 0.814887 | 1.23E-51 | -1.69E-46 |
| MS.gene05604 | MS.gene56547 | 0.811843 | 5.71E-51 | -1.69E-46 |
| MS.gene056050 | MS.gene56547 | 0.808009 | 3.82E-50 | -1.69E-46 |
| MS.gene056366 | MS.gene56547 | 0.803428 | 3.50E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene56547 | 0.803305 | 3.71E-49 | -1.69E-46 |
| MS.gene057314 | MS.gene56547 | 0.833736 | 4.49E-56 | -1.69E-46 |
| MS.gene057414 | MS.gene56547 | 0.803683 | 3.10E-49 | -1.69E-46 |
| MS.gene057444 | MS.gene56547 | 0.81493 | 1.20E-51 | -1.69E-46 |
| MS.gene057915 | MS.gene56547 | 0.815512 | 8.90E-52 | -1.69E-46 |
| MS.gene058625 | MS.gene56547 | 0.823992 | 1.03E-53 | -1.69E-46 |
| MS.gene059015 | MS.gene56547 | 0.801455 | 8.93E-49 | -1.69E-46 |
| MS.gene059084 | MS.gene56547 | 0.805781 | 1.13E-49 | -1.69E-46 |
| MS.gene059625 | MS.gene56547 | 0.824227 | 9.05E-54 | -1.69E-46 |
| MS.gene060521 | MS.gene56547 | 0.81562 | 8.42E-52 | -1.69E-46 |
| MS.gene060587 | MS.gene56547 | 0.807392 | 5.17E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56547.t1 | MTR_4g081540 | 95.958 | 767 | 29 | 1 | 1 | 765 | 20 | 786 | 0.0 | 1523 |
| MS.gene56547.t1 | MTR_4g099200 | 28.448 | 696 | 412 | 16 | 76 | 764 | 69 | 685 | 7.97e-76 | 259 |
| MS.gene56547.t1 | MTR_5g044930 | 34.731 | 334 | 208 | 6 | 435 | 764 | 335 | 662 | 3.96e-62 | 221 |
| MS.gene56547.t1 | MTR_5g045620 | 34.731 | 334 | 208 | 6 | 435 | 764 | 331 | 658 | 8.20e-62 | 220 |
| MS.gene56547.t1 | MTR_1g066900 | 25.179 | 699 | 443 | 17 | 85 | 764 | 64 | 701 | 1.14e-49 | 186 |
| MS.gene56547.t1 | MTR_1g048080 | 22.857 | 455 | 273 | 17 | 227 | 657 | 404 | 804 | 8.02e-16 | 82.4 |
| MS.gene56547.t1 | MTR_1g112240 | 24.026 | 308 | 213 | 10 | 430 | 731 | 170 | 462 | 1.87e-13 | 74.3 |
| MS.gene56547.t1 | MTR_4g068360 | 28.713 | 202 | 137 | 5 | 476 | 675 | 399 | 595 | 1.14e-12 | 72.0 |
| MS.gene56547.t1 | MTR_1g068960 | 24.092 | 303 | 211 | 7 | 430 | 727 | 270 | 558 | 6.43e-12 | 69.7 |
| MS.gene56547.t1 | MTR_5g045490 | 26.667 | 240 | 164 | 5 | 491 | 727 | 411 | 641 | 1.04e-11 | 68.9 |
| MS.gene56547.t1 | MTR_6g079310 | 23.355 | 304 | 220 | 7 | 428 | 729 | 185 | 477 | 1.30e-11 | 68.2 |
| MS.gene56547.t1 | MTR_8g103480 | 22.430 | 321 | 225 | 8 | 429 | 740 | 75 | 380 | 1.56e-11 | 68.2 |
| MS.gene56547.t1 | MTR_6g079240 | 23.355 | 304 | 220 | 7 | 428 | 729 | 73 | 365 | 2.72e-11 | 67.0 |
| MS.gene56547.t1 | MTR_6g079920 | 22.186 | 311 | 223 | 7 | 428 | 733 | 256 | 552 | 6.74e-11 | 66.2 |
| MS.gene56547.t1 | MTR_6g079830 | 21.569 | 306 | 231 | 6 | 428 | 733 | 256 | 552 | 9.39e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56547.t1 | AT1G03100 | 65.007 | 743 | 251 | 4 | 29 | 764 | 52 | 792 | 0.0 | 982 |
| MS.gene56547.t1 | AT4G17616 | 26.361 | 698 | 427 | 13 | 72 | 765 | 60 | 674 | 9.32e-69 | 239 |
| MS.gene56547.t1 | AT1G69290 | 33.929 | 336 | 210 | 7 | 435 | 764 | 327 | 656 | 2.57e-58 | 210 |
| MS.gene56547.t1 | AT1G69290 | 26.871 | 294 | 177 | 10 | 60 | 334 | 44 | 318 | 7.17e-12 | 69.3 |
| MS.gene56547.t1 | AT1G68980 | 29.040 | 427 | 261 | 11 | 360 | 761 | 205 | 614 | 4.36e-51 | 189 |
| MS.gene56547.t1 | AT3G09650 | 27.528 | 356 | 238 | 6 | 427 | 764 | 409 | 762 | 5.46e-37 | 149 |
| MS.gene56547.t1 | AT1G12620 | 27.778 | 306 | 202 | 9 | 428 | 728 | 208 | 499 | 1.71e-18 | 90.5 |
| MS.gene56547.t1 | AT1G12775 | 26.733 | 303 | 209 | 7 | 428 | 728 | 224 | 515 | 7.69e-16 | 82.0 |
| MS.gene56547.t1 | AT1G12300 | 25.828 | 302 | 211 | 6 | 429 | 728 | 225 | 515 | 3.31e-15 | 80.1 |
| MS.gene56547.t1 | AT5G04810 | 22.176 | 478 | 312 | 16 | 232 | 693 | 412 | 845 | 5.93e-15 | 79.7 |
| MS.gene56547.t1 | AT4G11690 | 28.022 | 182 | 123 | 4 | 485 | 663 | 292 | 468 | 5.48e-14 | 75.9 |
| MS.gene56547.t1 | AT4G11690 | 28.022 | 182 | 123 | 4 | 485 | 663 | 319 | 495 | 5.48e-14 | 75.9 |
| MS.gene56547.t1 | AT2G41720 | 20.083 | 483 | 339 | 13 | 224 | 700 | 76 | 517 | 2.49e-13 | 74.3 |
| MS.gene56547.t1 | AT2G41720 | 20.083 | 483 | 339 | 13 | 224 | 700 | 208 | 649 | 3.63e-13 | 73.9 |
| MS.gene56547.t1 | AT2G41720 | 20.083 | 483 | 339 | 13 | 224 | 700 | 208 | 649 | 4.17e-13 | 73.6 |
| MS.gene56547.t1 | AT1G63330 | 21.763 | 556 | 306 | 17 | 159 | 675 | 63 | 528 | 3.22e-12 | 70.5 |
| MS.gene56547.t1 | AT1G63330 | 21.763 | 556 | 306 | 17 | 159 | 675 | 63 | 528 | 3.22e-12 | 70.5 |
| MS.gene56547.t1 | AT1G63330 | 21.763 | 556 | 306 | 17 | 159 | 675 | 63 | 528 | 3.22e-12 | 70.5 |
| MS.gene56547.t1 | AT1G62590 | 21.763 | 556 | 306 | 17 | 159 | 675 | 138 | 603 | 3.87e-12 | 70.1 |
| MS.gene56547.t1 | AT1G62590 | 21.763 | 556 | 306 | 17 | 159 | 675 | 138 | 603 | 3.87e-12 | 70.1 |
| MS.gene56547.t1 | AT3G22470 | 24.746 | 295 | 203 | 8 | 428 | 717 | 206 | 486 | 1.81e-11 | 68.2 |
| MS.gene56547.t1 | AT5G41170 | 25.965 | 285 | 193 | 8 | 475 | 753 | 183 | 455 | 3.02e-11 | 67.0 |
| MS.gene56547.t1 | AT5G41170 | 25.965 | 285 | 193 | 8 | 475 | 753 | 183 | 455 | 3.06e-11 | 67.0 |
| MS.gene56547.t1 | AT5G41170 | 26.316 | 285 | 192 | 8 | 475 | 753 | 83 | 355 | 3.23e-11 | 66.6 |
| MS.gene56547.t1 | AT3G53700 | 22.924 | 301 | 219 | 7 | 430 | 728 | 293 | 582 | 8.30e-11 | 66.2 |
Find 165 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTACATGCCATTTGAAATT+TGG | 0.073659 | 4.4:-30807302 | MS.gene56547:CDS |
| CGGCATTTCTACTGGGATTT+AGG | 0.142806 | 4.4:-30808123 | MS.gene56547:CDS |
| CACTGCTTGGTCTGCAGTTT+TGG | 0.156597 | 4.4:-30807699 | MS.gene56547:CDS |
| ATGATTGCTAATTGCAATTA+TGG | 0.166879 | 4.4:-30808226 | MS.gene56547:CDS |
| CTCTTGCATCTGCCAAATTC+TGG | 0.200430 | 4.4:-30807214 | MS.gene56547:CDS |
| AAGTTCCTGATCAAACTTTA+TGG | 0.205294 | 4.4:+30806185 | None:intergenic |
| GTGCTCCCTGTGTGTCTTCC+TGG | 0.209568 | 4.4:+30806574 | None:intergenic |
| ATCAATCATCTTTCTTAAAA+TGG | 0.216604 | 4.4:+30807742 | None:intergenic |
| CCCTGCCAACGCAATATTAA+AGG | 0.232891 | 4.4:+30807535 | None:intergenic |
| GATTTGATTACAACCGTTAA+TGG | 0.242795 | 4.4:-30806972 | MS.gene56547:CDS |
| TTACATGCCATTTGAAATTT+GGG | 0.247497 | 4.4:-30807301 | MS.gene56547:CDS |
| AGTTGTATCGATCCAGAATT+TGG | 0.248413 | 4.4:+30807202 | None:intergenic |
| TGTGATTCTGTCTGAAATTT+CGG | 0.259129 | 4.4:+30806006 | None:intergenic |
| ACTTCCAAGAATAATCTAAT+TGG | 0.259831 | 4.4:+30807987 | None:intergenic |
| TTCTGCATCCAACATGGTTT+TGG | 0.270531 | 4.4:-30807270 | MS.gene56547:CDS |
| TTTAAGCAACAGTGAAGATT+TGG | 0.272431 | 4.4:-30807135 | MS.gene56547:CDS |
| TTTAAGAAAGATGATTGATA+TGG | 0.281446 | 4.4:-30807738 | MS.gene56547:CDS |
| GCTGAGTTGATTCTTGAAAT+AGG | 0.282639 | 4.4:-30807638 | MS.gene56547:CDS |
| AAGCCTATTGTGTAGCAAAT+AGG | 0.296952 | 4.4:-30806692 | MS.gene56547:CDS |
| GAGGATCTACTCTGTTGTTT+TGG | 0.297294 | 4.4:+30807606 | None:intergenic |
| CATCGTTGCCACAACTTCAT+TGG | 0.300998 | 4.4:+30806113 | None:intergenic |
| TGCACAAACTTTCCATTCTA+TGG | 0.301452 | 4.4:-30806292 | MS.gene56547:CDS |
| GCAACCAATTAGATTATTCT+TGG | 0.317408 | 4.4:-30807991 | MS.gene56547:CDS |
| AGAATATCGTTGACTAACTT+TGG | 0.324793 | 4.4:+30806515 | None:intergenic |
| GAATGGAAAGTTTGTGCATT+AGG | 0.328520 | 4.4:+30806297 | None:intergenic |
| CAGTCTATTGTGAAGTTTGT+TGG | 0.334837 | 4.4:-30808172 | MS.gene56547:CDS |
| TCACTGGGTATGCTGCCATT+GGG | 0.344721 | 4.4:-30806269 | MS.gene56547:CDS |
| GCCTTTAATATTGCGTTGGC+AGG | 0.347893 | 4.4:-30807536 | MS.gene56547:CDS |
| GCGGAGTCAAAAGCTGTTCT+TGG | 0.360951 | 4.4:-30807026 | MS.gene56547:CDS |
| GTCACTGGGTATGCTGCCAT+TGG | 0.367999 | 4.4:-30806270 | MS.gene56547:CDS |
| AAGTTCAACGGCATTTCTAC+TGG | 0.374688 | 4.4:-30808131 | MS.gene56547:CDS |
| ATATTAAAGGCATTGGTGTT+TGG | 0.380104 | 4.4:+30807548 | None:intergenic |
| GCTGAATTGTCATTGGAAAA+TGG | 0.380210 | 4.4:+30806837 | None:intergenic |
| CTTCCTGGAGCACCTTGGAT+TGG | 0.383572 | 4.4:+30806589 | None:intergenic |
| AGCCTATTGTGTAGCAAATA+GGG | 0.389473 | 4.4:-30806691 | MS.gene56547:CDS |
| AGGACTATATATCTCAAGTA+TGG | 0.395849 | 4.4:-30808083 | MS.gene56547:CDS |
| GAATATCGTTGACTAACTTT+GGG | 0.399072 | 4.4:+30806516 | None:intergenic |
| AACTGTATATCAGTTAGGTT+TGG | 0.405226 | 4.4:+30807347 | None:intergenic |
| CAGAATCACAATTAAACAAA+AGG | 0.410643 | 4.4:-30805993 | MS.gene56547:CDS |
| AAAGTTAGTCAACGATATTC+TGG | 0.412804 | 4.4:-30806513 | MS.gene56547:CDS |
| CTTTGGCCGGGTCTTGAGCC+TGG | 0.415962 | 4.4:+30808044 | None:intergenic |
| GAAAGTTAGACTACCAGTTC+TGG | 0.417222 | 4.4:-30807771 | MS.gene56547:CDS |
| CTAAAGAAGATGAGAAGCTT+AGG | 0.419886 | 4.4:-30806327 | MS.gene56547:CDS |
| GCACGTGTATACGAGAGAAA+TGG | 0.424522 | 4.4:-30807416 | MS.gene56547:CDS |
| GTTGTGGCAACGATGGAAAA+AGG | 0.431562 | 4.4:-30806105 | MS.gene56547:CDS |
| TGGTTGCAGTATACCATTAA+CGG | 0.437581 | 4.4:+30806959 | None:intergenic |
| CACTGGGTATGCTGCCATTG+GGG | 0.438082 | 4.4:-30806268 | MS.gene56547:CDS |
| AGACATCATTTCTTATTAGC+TGG | 0.438952 | 4.4:+30807096 | None:intergenic |
| GCTAATTGCAATTATGGTAC+AGG | 0.440979 | 4.4:-30808220 | MS.gene56547:CDS |
| TTGAGATATATAGTCCTTGA+AGG | 0.442538 | 4.4:+30808089 | None:intergenic |
| CTTGATATGATGCCTCGAAT+TGG | 0.443137 | 4.4:-30807473 | MS.gene56547:CDS |
| TTGTATTTCTATAGTAACTT+TGG | 0.443506 | 4.4:+30808027 | None:intergenic |
| AGGAACAGATTCTTCCTTCA+AGG | 0.443878 | 4.4:-30808103 | MS.gene56547:CDS |
| AGCCCTATTTGCTACACAAT+AGG | 0.444642 | 4.4:+30806689 | None:intergenic |
| TTTGTAGCCATTGCATATCA+AGG | 0.445756 | 4.4:+30807885 | None:intergenic |
| ACTTTCCATTCTATGGTCAC+TGG | 0.446895 | 4.4:-30806285 | MS.gene56547:CDS |
| AACCAAGGCTGAATTGTCAT+TGG | 0.450385 | 4.4:+30806830 | None:intergenic |
| CGTCTAGCTGGAGTTAGAAC+TGG | 0.455954 | 4.4:-30806741 | MS.gene56547:CDS |
| ATTTCTATAGTAACTTTGGC+CGG | 0.457460 | 4.4:+30808031 | None:intergenic |
| GTCTCGTATTTGAGAAATCT+AGG | 0.462699 | 4.4:-30807511 | MS.gene56547:CDS |
| GTCCTCCATAAAGTTTGATC+AGG | 0.465447 | 4.4:-30806190 | MS.gene56547:CDS |
| ATTTGCTAAATTGCAGATGC+AGG | 0.466137 | 4.4:-30806997 | MS.gene56547:CDS |
| CAAGATCCCCAAATTTCAAA+TGG | 0.466841 | 4.4:+30807294 | None:intergenic |
| TTCCAATGACAATTCAGCCT+TGG | 0.466844 | 4.4:-30806832 | MS.gene56547:CDS |
| GTCGGAACTGTATATCAGTT+AGG | 0.469698 | 4.4:+30807342 | None:intergenic |
| CTTGATGAGATGCGTCTAGC+TGG | 0.472437 | 4.4:-30806753 | MS.gene56547:CDS |
| TTTACATATATTGTTTCAGT+TGG | 0.473433 | 4.4:+30806939 | None:intergenic |
| TTAAAGAGATGAAGGAAGCT+AGG | 0.473501 | 4.4:-30806542 | MS.gene56547:CDS |
| CTGAGAGATGCTAGGAAGGC+TGG | 0.475642 | 4.4:-30806648 | MS.gene56547:CDS |
| GATCCAATCCAAGGTGCTCC+AGG | 0.477295 | 4.4:-30806592 | MS.gene56547:CDS |
| ACTGGGTATGCTGCCATTGG+GGG | 0.478931 | 4.4:-30806267 | MS.gene56547:CDS |
| CTTGGCAGTGTTTCTTCTCA+AGG | 0.479864 | 4.4:-30806877 | MS.gene56547:CDS |
| AGGTGGATCGGCATGATTTG+AGG | 0.481005 | 4.4:-30805949 | None:intergenic |
| ATGCATATCACTTGGATGGT+TGG | 0.481318 | 4.4:-30806793 | MS.gene56547:CDS |
| AAAATGGTCGATGCCAGAAC+TGG | 0.483631 | 4.4:+30807758 | None:intergenic |
| CTTAAATTATCCACAGAAGC+TGG | 0.484706 | 4.4:+30807152 | None:intergenic |
| AAATGATGTCTTATCTTATG+AGG | 0.484843 | 4.4:-30807084 | MS.gene56547:CDS |
| AAGAAACACTGCCAAGTCCT+TGG | 0.489763 | 4.4:+30806884 | None:intergenic |
| CACGTGTATACGAGAGAAAT+GGG | 0.490263 | 4.4:-30807415 | MS.gene56547:CDS |
| TTGTATACATTTGTGAGGGG+TGG | 0.490566 | 4.4:-30806150 | MS.gene56547:CDS |
| CAACGCAATATTAAAGGCAT+TGG | 0.494820 | 4.4:+30807541 | None:intergenic |
| CTTTCCATTCTATGGTCACT+GGG | 0.495599 | 4.4:-30806284 | MS.gene56547:CDS |
| CGTGATTATAACTAGTTATG+TGG | 0.496101 | 4.4:-30807912 | MS.gene56547:CDS |
| GGCGGGTAAGACCAAGGACT+TGG | 0.497066 | 4.4:-30806895 | MS.gene56547:CDS |
| CATAAGAGTTTGAGTCAAGC+TGG | 0.499981 | 4.4:+30806622 | None:intergenic |
| CATACCCAGTGACCATAGAA+TGG | 0.502973 | 4.4:+30806280 | None:intergenic |
| AAATGCCGTTGAACTTGACT+TGG | 0.506853 | 4.4:+30808138 | None:intergenic |
| TTATCCACAGAAGCTGGTCT+AGG | 0.507976 | 4.4:+30807158 | None:intergenic |
| GCTTGACTCAAACTCTTATG+AGG | 0.509657 | 4.4:-30806619 | MS.gene56547:CDS |
| AAAAGACTTGTTAGAGAAGG+AGG | 0.510907 | 4.4:-30807822 | MS.gene56547:CDS |
| CTGTCTTGTATACATTTGTG+AGG | 0.510919 | 4.4:-30806155 | MS.gene56547:CDS |
| AAAGCTGGTGCAGGAAATCA+AGG | 0.512822 | 4.4:-30806442 | MS.gene56547:CDS |
| AATCAAGGACGGACAGAAAG+TGG | 0.512970 | 4.4:-30806427 | MS.gene56547:CDS |
| ATTCATGCATATCACTTGGA+TGG | 0.518115 | 4.4:-30806797 | MS.gene56547:CDS |
| TGTGTCTTCCTGGAGCACCT+TGG | 0.520609 | 4.4:+30806584 | None:intergenic |
| AGAATCACAATTAAACAAAA+GGG | 0.523544 | 4.4:-30805992 | MS.gene56547:CDS |
| AAGCAACAGTGAAGATTTGG+AGG | 0.527448 | 4.4:-30807132 | MS.gene56547:CDS |
| CTTTCGCAAGGCCGTAGCTA+AGG | 0.528228 | 4.4:+30807789 | None:intergenic |
| TTTCTATAGTAACTTTGGCC+GGG | 0.529725 | 4.4:+30808032 | None:intergenic |
| ACTTATGACAAAGCTGGTGC+AGG | 0.530639 | 4.4:-30806451 | MS.gene56547:CDS |
| CCGGGTCTTGAGCCTGGACA+AGG | 0.530943 | 4.4:+30808050 | None:intergenic |
| TGTCTTGTATACATTTGTGA+GGG | 0.532711 | 4.4:-30806154 | MS.gene56547:CDS |
| GGCTGAAAGAATCCTTGTCC+AGG | 0.533987 | 4.4:-30808062 | MS.gene56547:CDS |
| AAACTTCTTAAAACTTGAAG+CGG | 0.537836 | 4.4:-30807045 | MS.gene56547:CDS |
| CATCAAGGAGATCATGTGCT+TGG | 0.538087 | 4.4:+30806769 | None:intergenic |
| TAGAAAAGACTTGTTAGAGA+AGG | 0.538435 | 4.4:-30807825 | MS.gene56547:CDS |
| TCTGGAGGTAACAGAGCTGT+GGG | 0.538692 | 4.4:-30806238 | MS.gene56547:CDS |
| TTTGGTTTCATCGCAATCAA+AGG | 0.541935 | 4.4:+30807566 | None:intergenic |
| ATTAATTCATGCATATCACT+TGG | 0.547621 | 4.4:-30806801 | MS.gene56547:CDS |
| CCTTGTCCAGGCTCAAGACC+CGG | 0.550948 | 4.4:-30808050 | MS.gene56547:CDS |
| TCAGCTTTGACACCAATTCG+AGG | 0.553430 | 4.4:+30807461 | None:intergenic |
| AGTTCAACGGCATTTCTACT+GGG | 0.553498 | 4.4:-30808130 | MS.gene56547:CDS |
| GTTCTTATCTACCTTAGCTA+CGG | 0.554355 | 4.4:-30807800 | MS.gene56547:CDS |
| CACATGTCACAAACAGCAGA+TGG | 0.554653 | 4.4:-30807674 | MS.gene56547:CDS |
| ACTGCAGACCAAGCAGTGAC+AGG | 0.556611 | 4.4:+30807704 | None:intergenic |
| AAGCATTTCCAAAACCATGT+TGG | 0.559998 | 4.4:+30807262 | None:intergenic |
| CCTTTAATATTGCGTTGGCA+GGG | 0.560715 | 4.4:-30807535 | MS.gene56547:CDS |
| CAGCTAGACGCATCTCATCA+AGG | 0.561549 | 4.4:+30806754 | None:intergenic |
| GCAAACAATTATAGAACTGT+CGG | 0.564048 | 4.4:+30807324 | None:intergenic |
| ACTTCTGAGAGATGCTAGGA+AGG | 0.564204 | 4.4:-30806652 | MS.gene56547:CDS |
| GGAAATGCTTCGAAAAGCAA+AGG | 0.565590 | 4.4:-30807249 | MS.gene56547:CDS |
| TTTATCCAAGTCAAGTTCAA+CGG | 0.567262 | 4.4:-30808143 | MS.gene56547:CDS |
| TTCTCCTAGACCAGCTTCTG+TGG | 0.572379 | 4.4:-30807162 | MS.gene56547:CDS |
| AAGAGCTTATGAAGCTGCAA+AGG | 0.574086 | 4.4:-30807385 | MS.gene56547:CDS |
| CAACAAACTTCACAATAGAC+TGG | 0.577161 | 4.4:+30808173 | None:intergenic |
| CTGGGTATGCTGCCATTGGG+GGG | 0.579929 | 4.4:-30806266 | MS.gene56547:CDS |
| CAATGCCTTTAATATTGCGT+TGG | 0.581332 | 4.4:-30807540 | MS.gene56547:CDS |
| ATCTGGAGGTAACAGAGCTG+TGG | 0.583924 | 4.4:-30806239 | MS.gene56547:CDS |
| CATCACTTCTGAGAGATGCT+AGG | 0.584379 | 4.4:-30806656 | MS.gene56547:CDS |
| TGGATTGTGGAGTTCATGAC+TGG | 0.586454 | 4.4:-30806407 | MS.gene56547:CDS |
| CATCCGTGCCAATGAAGTTG+TGG | 0.590357 | 4.4:-30806121 | MS.gene56547:CDS |
| GAACTTGACTTGGATAAACA+AGG | 0.595055 | 4.4:+30808148 | None:intergenic |
| AGCTGCACTTATGACAAAGC+TGG | 0.597999 | 4.4:-30806457 | MS.gene56547:CDS |
| TCTTGATTCTGCATCCAACA+TGG | 0.598750 | 4.4:-30807276 | MS.gene56547:CDS |
| GACGGACAGAAAGTGGATTG+TGG | 0.598990 | 4.4:-30806420 | MS.gene56547:CDS |
| TACATGCCATTTGAAATTTG+GGG | 0.599721 | 4.4:-30807300 | MS.gene56547:CDS |
| TTGCCACAACTTCATTGGCA+CGG | 0.600337 | 4.4:+30806118 | None:intergenic |
| CGTATTTGAGAAATCTAGGA+AGG | 0.600459 | 4.4:-30807507 | MS.gene56547:CDS |
| GTACAACGTGCTGGTGAAGA+TGG | 0.602079 | 4.4:-30807848 | MS.gene56547:CDS |
| GTCTTGTATACATTTGTGAG+GGG | 0.602463 | 4.4:-30806153 | MS.gene56547:CDS |
| GAAATACAAAATGCTATCAG+TGG | 0.603268 | 4.4:-30808013 | MS.gene56547:CDS |
| GAGCAGCATAAGCACATGGA+GGG | 0.605728 | 4.4:-30807959 | MS.gene56547:CDS |
| CAAAACACTTTACAAAGGCA+AGG | 0.611151 | 4.4:-30806031 | MS.gene56547:CDS |
| CAAGAATCAACTCAGCAGCA+AGG | 0.612432 | 4.4:+30807645 | None:intergenic |
| TGAGGCAATGATCCAATCCA+AGG | 0.615504 | 4.4:-30806601 | MS.gene56547:CDS |
| TGCAAACTTACTGATAACAA+TGG | 0.616441 | 4.4:-30807438 | MS.gene56547:CDS |
| TTTAGAGGCGGGTAAGACCA+AGG | 0.619590 | 4.4:-30806901 | MS.gene56547:CDS |
| AGCAACAGTGAAGATTTGGA+GGG | 0.624674 | 4.4:-30807131 | MS.gene56547:CDS |
| TATGAATTGGTACAACGTGC+TGG | 0.627187 | 4.4:-30807857 | MS.gene56547:CDS |
| CTGGTAGTCTAACTTTCGCA+AGG | 0.629938 | 4.4:+30807777 | None:intergenic |
| TTCCTGATCAAACTTTATGG+AGG | 0.630008 | 4.4:+30806188 | None:intergenic |
| TGAATTAATAACATGAACCA+AGG | 0.630305 | 4.4:+30806815 | None:intergenic |
| CAATGAAGTTGTGGCAACGA+TGG | 0.638976 | 4.4:-30806112 | MS.gene56547:CDS |
| TATCACAAAACACTTTACAA+AGG | 0.639956 | 4.4:-30806036 | MS.gene56547:CDS |
| GGTGCTCCAGGAAGACACAC+AGG | 0.645392 | 4.4:-30806580 | MS.gene56547:CDS |
| AACTTGACTTGGATAAACAA+GGG | 0.645984 | 4.4:+30808149 | None:intergenic |
| TCAACGATATTCTGGCACGC+TGG | 0.648642 | 4.4:-30806505 | MS.gene56547:CDS |
| TGGAAAGCCTTGATATGCAA+TGG | 0.659467 | 4.4:-30807892 | MS.gene56547:CDS |
| CTGGTGCAGGAAATCAAGGA+CGG | 0.672730 | 4.4:-30806438 | MS.gene56547:CDS |
| ATTTGAGCAGCATAAGCACA+TGG | 0.674617 | 4.4:-30807963 | MS.gene56547:CDS |
| GCAGACCAAGCAGTGACAGG+AGG | 0.683106 | 4.4:+30807707 | None:intergenic |
| ATTTGAGAAATCTAGGAAGG+CGG | 0.686707 | 4.4:-30807504 | MS.gene56547:CDS |
| GTGCTCCAGGAAGACACACA+GGG | 0.692536 | 4.4:-30806579 | MS.gene56547:CDS |
| TGAGCAGCATAAGCACATGG+AGG | 0.708738 | 4.4:-30807960 | MS.gene56547:CDS |
| CTGGAGGTAACAGAGCTGTG+GGG | 0.758688 | 4.4:-30806237 | MS.gene56547:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAATCACAATTAAACAAAA+GGG | - | chr4.4:30808185-30808204 | MS.gene56547:CDS | 20.0% |
| !! | ATCAATCATCTTTCTTAAAA+TGG | + | chr4.4:30806438-30806457 | None:intergenic | 20.0% |
| !! | TTTAAGAAAGATGATTGATA+TGG | - | chr4.4:30806439-30806458 | MS.gene56547:CDS | 20.0% |
| !! | TTTACATATATTGTTTCAGT+TGG | + | chr4.4:30807241-30807260 | None:intergenic | 20.0% |
| !!! | ATTAGTTAAAGCTTTTTTAG+AGG | - | chr4.4:30807261-30807280 | MS.gene56547:CDS | 20.0% |
| !!! | TTGTATTTCTATAGTAACTT+TGG | + | chr4.4:30806153-30806172 | None:intergenic | 20.0% |
| ! | AAACTTCTTAAAACTTGAAG+CGG | - | chr4.4:30807132-30807151 | MS.gene56547:CDS | 25.0% |
| ! | AAATGATGTCTTATCTTATG+AGG | - | chr4.4:30807093-30807112 | MS.gene56547:CDS | 25.0% |
| ! | ACTTCCAAGAATAATCTAAT+TGG | + | chr4.4:30806193-30806212 | None:intergenic | 25.0% |
| ! | ATGATTGCTAATTGCAATTA+TGG | - | chr4.4:30805951-30805970 | MS.gene56547:CDS | 25.0% |
| ! | ATTAATTCATGCATATCACT+TGG | - | chr4.4:30807376-30807395 | MS.gene56547:CDS | 25.0% |
| ! | CAGAATCACAATTAAACAAA+AGG | - | chr4.4:30808184-30808203 | MS.gene56547:CDS | 25.0% |
| ! | TATCACAAAACACTTTACAA+AGG | - | chr4.4:30808141-30808160 | MS.gene56547:CDS | 25.0% |
| ! | TGAATTAATAACATGAACCA+AGG | + | chr4.4:30807365-30807384 | None:intergenic | 25.0% |
| !! | TTACATGCCATTTGAAATTT+GGG | - | chr4.4:30806876-30806895 | MS.gene56547:CDS | 25.0% |
| !!! | TCAACTTTTTAAAGAGATGA+AGG | - | chr4.4:30807627-30807646 | MS.gene56547:CDS | 25.0% |
| !!! | TTTTAAGAAGTTTCGATCTT+TGG | + | chr4.4:30807125-30807144 | None:intergenic | 25.0% |
| AAAGTTAGTCAACGATATTC+TGG | - | chr4.4:30807664-30807683 | MS.gene56547:CDS | 30.0% | |
| AACTGTATATCAGTTAGGTT+TGG | + | chr4.4:30806833-30806852 | None:intergenic | 30.0% | |
| AAGTTCCTGATCAAACTTTA+TGG | + | chr4.4:30807995-30808014 | None:intergenic | 30.0% | |
| AGACATCATTTCTTATTAGC+TGG | + | chr4.4:30807084-30807103 | None:intergenic | 30.0% | |
| AGGACTATATATCTCAAGTA+TGG | - | chr4.4:30806094-30806113 | MS.gene56547:CDS | 30.0% | |
| ATTTCTATAGTAACTTTGGC+CGG | + | chr4.4:30806149-30806168 | None:intergenic | 30.0% | |
| CGTGATTATAACTAGTTATG+TGG | - | chr4.4:30806265-30806284 | MS.gene56547:CDS | 30.0% | |
| GAAATACAAAATGCTATCAG+TGG | - | chr4.4:30806164-30806183 | MS.gene56547:CDS | 30.0% | |
| GATTTGATTACAACCGTTAA+TGG | - | chr4.4:30807205-30807224 | MS.gene56547:CDS | 30.0% | |
| GCAAACAATTATAGAACTGT+CGG | + | chr4.4:30806856-30806875 | None:intergenic | 30.0% | |
| GCAACCAATTAGATTATTCT+TGG | - | chr4.4:30806186-30806205 | MS.gene56547:CDS | 30.0% | |
| GCTACAAAAAGCTTATGAAT+TGG | - | chr4.4:30806307-30806326 | MS.gene56547:CDS | 30.0% | |
| GTCTCTTCTTACTAAAAAAG+TGG | + | chr4.4:30807807-30807826 | None:intergenic | 30.0% | |
| TGCAAACTTACTGATAACAA+TGG | - | chr4.4:30806739-30806758 | MS.gene56547:CDS | 30.0% | |
| TGTCTTGTATACATTTGTGA+GGG | - | chr4.4:30808023-30808042 | MS.gene56547:CDS | 30.0% | |
| TTGAGATATATAGTCCTTGA+AGG | + | chr4.4:30806091-30806110 | None:intergenic | 30.0% | |
| TTTAAGCAACAGTGAAGATT+TGG | - | chr4.4:30807042-30807061 | MS.gene56547:CDS | 30.0% | |
| TTTATCCAAGTCAAGTTCAA+CGG | - | chr4.4:30806034-30806053 | MS.gene56547:CDS | 30.0% | |
| ! | AGAATATCGTTGACTAACTT+TGG | + | chr4.4:30807665-30807684 | None:intergenic | 30.0% |
| ! | CTTACATGCCATTTGAAATT+TGG | - | chr4.4:30806875-30806894 | MS.gene56547:CDS | 30.0% |
| ! | GAATATCGTTGACTAACTTT+GGG | + | chr4.4:30807664-30807683 | None:intergenic | 30.0% |
| ! | GACTTCTTTTATTGGAAACT+TGG | + | chr4.4:30805983-30806002 | None:intergenic | 30.0% |
| ! | TACATGCCATTTGAAATTTG+GGG | - | chr4.4:30806877-30806896 | MS.gene56547:CDS | 30.0% |
| ! | TGTGATTCTGTCTGAAATTT+CGG | + | chr4.4:30808174-30808193 | None:intergenic | 30.0% |
| !! | AACTTGACTTGGATAAACAA+GGG | + | chr4.4:30806031-30806050 | None:intergenic | 30.0% |
| !! | ATATTAAAGGCATTGGTGTT+TGG | + | chr4.4:30806632-30806651 | None:intergenic | 30.0% |
| !! | TAGAAAAGACTTGTTAGAGA+AGG | - | chr4.4:30806352-30806371 | MS.gene56547:CDS | 30.0% |
| !!! | AGTTAAAGCTTTTTTAGAGG+CGG | - | chr4.4:30807264-30807283 | MS.gene56547:CDS | 30.0% |
| AAGCATTTCCAAAACCATGT+TGG | + | chr4.4:30806918-30806937 | None:intergenic | 35.0% | |
| AAGCCTATTGTGTAGCAAAT+AGG | - | chr4.4:30807485-30807504 | MS.gene56547:CDS | 35.0% | |
| AGCCTATTGTGTAGCAAATA+GGG | - | chr4.4:30807486-30807505 | MS.gene56547:CDS | 35.0% | |
| ATTCATGCATATCACTTGGA+TGG | - | chr4.4:30807380-30807399 | MS.gene56547:CDS | 35.0% | |
| ATTTGAGAAATCTAGGAAGG+CGG | - | chr4.4:30806673-30806692 | MS.gene56547:CDS | 35.0% | |
| CAAAACACTTTACAAAGGCA+AGG | - | chr4.4:30808146-30808165 | MS.gene56547:CDS | 35.0% | |
| CAACAAACTTCACAATAGAC+TGG | + | chr4.4:30806007-30806026 | None:intergenic | 35.0% | |
| CAAGATCCCCAAATTTCAAA+TGG | + | chr4.4:30806886-30806905 | None:intergenic | 35.0% | |
| CAATGCCTTTAATATTGCGT+TGG | - | chr4.4:30806637-30806656 | MS.gene56547:CDS | 35.0% | |
| CAGTCTATTGTGAAGTTTGT+TGG | - | chr4.4:30806005-30806024 | MS.gene56547:CDS | 35.0% | |
| CGTATTTGAGAAATCTAGGA+AGG | - | chr4.4:30806670-30806689 | MS.gene56547:CDS | 35.0% | |
| CTAAAGAAGATGAGAAGCTT+AGG | - | chr4.4:30807850-30807869 | MS.gene56547:CDS | 35.0% | |
| CTGTCTTGTATACATTTGTG+AGG | - | chr4.4:30808022-30808041 | MS.gene56547:CDS | 35.0% | |
| CTTAAATTATCCACAGAAGC+TGG | + | chr4.4:30807028-30807047 | None:intergenic | 35.0% | |
| GAATGGAAAGTTTGTGCATT+AGG | + | chr4.4:30807883-30807902 | None:intergenic | 35.0% | |
| GATCCTCGTAAAAAGATCAA+TGG | - | chr4.4:30806587-30806606 | MS.gene56547:CDS | 35.0% | |
| GCTAATTGCAATTATGGTAC+AGG | - | chr4.4:30805957-30805976 | MS.gene56547:CDS | 35.0% | |
| GCTGAATTGTCATTGGAAAA+TGG | + | chr4.4:30807343-30807362 | None:intergenic | 35.0% | |
| GTCTCGTATTTGAGAAATCT+AGG | - | chr4.4:30806666-30806685 | MS.gene56547:CDS | 35.0% | |
| GTCTTGTATACATTTGTGAG+GGG | - | chr4.4:30808024-30808043 | MS.gene56547:CDS | 35.0% | |
| GTTCTTATCTACCTTAGCTA+CGG | - | chr4.4:30806377-30806396 | MS.gene56547:CDS | 35.0% | |
| TGCACAAACTTTCCATTCTA+TGG | - | chr4.4:30807885-30807904 | MS.gene56547:CDS | 35.0% | |
| TGGTTGCAGTATACCATTAA+CGG | + | chr4.4:30807221-30807240 | None:intergenic | 35.0% | |
| TTAAAGAGATGAAGGAAGCT+AGG | - | chr4.4:30807635-30807654 | MS.gene56547:CDS | 35.0% | |
| TTCCTGATCAAACTTTATGG+AGG | + | chr4.4:30807992-30808011 | None:intergenic | 35.0% | |
| TTTCTATAGTAACTTTGGCC+GGG | + | chr4.4:30806148-30806167 | None:intergenic | 35.0% | |
| TTTGTAGCCATTGCATATCA+AGG | + | chr4.4:30806295-30806314 | None:intergenic | 35.0% | |
| ! | ACGTTGAAGAGAGATTTTCT+TGG | + | chr4.4:30806248-30806267 | None:intergenic | 35.0% |
| ! | AGACTGGAGACTTCTTTTAT+TGG | + | chr4.4:30805991-30806010 | None:intergenic | 35.0% |
| ! | AGTTGTATCGATCCAGAATT+TGG | + | chr4.4:30806978-30806997 | None:intergenic | 35.0% |
| ! | ATTTGCTAAATTGCAGATGC+AGG | - | chr4.4:30807180-30807199 | MS.gene56547:CDS | 35.0% |
| ! | CAACGCAATATTAAAGGCAT+TGG | + | chr4.4:30806639-30806658 | None:intergenic | 35.0% |
| ! | TTTGGTTTCATCGCAATCAA+AGG | + | chr4.4:30806614-30806633 | None:intergenic | 35.0% |
| !! | AAAAGACTTGTTAGAGAAGG+AGG | - | chr4.4:30806355-30806374 | MS.gene56547:CDS | 35.0% |
| !! | CTGACTTTTAAAAGGTGGAT+CGG | - | chr4.4:30808216-30808235 | MS.gene56547:CDS | 35.0% |
| !! | GAACTTGACTTGGATAAACA+AGG | + | chr4.4:30806032-30806051 | None:intergenic | 35.0% |
| !! | GATCCACCTTTTAAAAGTCA+GGG | + | chr4.4:30808217-30808236 | None:intergenic | 35.0% |
| !! | GCTGAGTTGATTCTTGAAAT+AGG | - | chr4.4:30806539-30806558 | MS.gene56547:CDS | 35.0% |
| !!! | GTTAAAGCTTTTTTAGAGGC+GGG | - | chr4.4:30807265-30807284 | MS.gene56547:CDS | 35.0% |
| AAATGCCGTTGAACTTGACT+TGG | + | chr4.4:30806042-30806061 | None:intergenic | 40.0% | |
| AACCAAGGCTGAATTGTCAT+TGG | + | chr4.4:30807350-30807369 | None:intergenic | 40.0% | |
| AAGAGCTTATGAAGCTGCAA+AGG | - | chr4.4:30806792-30806811 | MS.gene56547:CDS | 40.0% | |
| AAGCAACAGTGAAGATTTGG+AGG | - | chr4.4:30807045-30807064 | MS.gene56547:CDS | 40.0% | |
| AAGTTCAACGGCATTTCTAC+TGG | - | chr4.4:30806046-30806065 | MS.gene56547:CDS | 40.0% | |
| ACTTTCCATTCTATGGTCAC+TGG | - | chr4.4:30807892-30807911 | MS.gene56547:CDS | 40.0% | |
| AGCAACAGTGAAGATTTGGA+GGG | - | chr4.4:30807046-30807065 | MS.gene56547:CDS | 40.0% | |
| AGGAACAGATTCTTCCTTCA+AGG | - | chr4.4:30806074-30806093 | MS.gene56547:CDS | 40.0% | |
| AGTTCAACGGCATTTCTACT+GGG | - | chr4.4:30806047-30806066 | MS.gene56547:CDS | 40.0% | |
| ATGCATATCACTTGGATGGT+TGG | - | chr4.4:30807384-30807403 | MS.gene56547:CDS | 40.0% | |
| ATTTGAGCAGCATAAGCACA+TGG | - | chr4.4:30806214-30806233 | MS.gene56547:CDS | 40.0% | |
| CACGTGTATACGAGAGAAAT+GGG | - | chr4.4:30806762-30806781 | MS.gene56547:CDS | 40.0% | |
| CATAAGAGTTTGAGTCAAGC+TGG | + | chr4.4:30807558-30807577 | None:intergenic | 40.0% | |
| CTTGATATGATGCCTCGAAT+TGG | - | chr4.4:30806704-30806723 | MS.gene56547:CDS | 40.0% | |
| CTTTCCATTCTATGGTCACT+GGG | - | chr4.4:30807893-30807912 | MS.gene56547:CDS | 40.0% | |
| GAAAGTTAGACTACCAGTTC+TGG | - | chr4.4:30806406-30806425 | MS.gene56547:CDS | 40.0% | |
| GCTTGACTCAAACTCTTATG+AGG | - | chr4.4:30807558-30807577 | MS.gene56547:CDS | 40.0% | |
| GGAAATGCTTCGAAAAGCAA+AGG | - | chr4.4:30806928-30806947 | MS.gene56547:CDS | 40.0% | |
| GTCCTCCATAAAGTTTGATC+AGG | - | chr4.4:30807987-30808006 | MS.gene56547:CDS | 40.0% | |
| GTCGGAACTGTATATCAGTT+AGG | + | chr4.4:30806838-30806857 | None:intergenic | 40.0% | |
| TATGAATTGGTACAACGTGC+TGG | - | chr4.4:30806320-30806339 | MS.gene56547:CDS | 40.0% | |
| TCTTGATTCTGCATCCAACA+TGG | - | chr4.4:30806901-30806920 | MS.gene56547:CDS | 40.0% | |
| TGGAAAGCCTTGATATGCAA+TGG | - | chr4.4:30806285-30806304 | MS.gene56547:CDS | 40.0% | |
| TTCCAATGACAATTCAGCCT+TGG | - | chr4.4:30807345-30807364 | MS.gene56547:CDS | 40.0% | |
| TTGTATACATTTGTGAGGGG+TGG | - | chr4.4:30808027-30808046 | MS.gene56547:CDS | 40.0% | |
| ! | AAGCAGCCCTGACTTTTAAA+AGG | - | chr4.4:30808208-30808227 | MS.gene56547:CDS | 40.0% |
| ! | AGCCCTATTTGCTACACAAT+AGG | + | chr4.4:30807491-30807510 | None:intergenic | 40.0% |
| ! | CCTTTAATATTGCGTTGGCA+GGG | - | chr4.4:30806642-30806661 | MS.gene56547:CDS | 40.0% |
| ! | GGTCCATTGATCTTTTTACG+AGG | + | chr4.4:30806593-30806612 | None:intergenic | 40.0% |
| ! | TTCTGCATCCAACATGGTTT+TGG | - | chr4.4:30806907-30806926 | MS.gene56547:CDS | 40.0% |
| !! | CGATCCACCTTTTAAAAGTC+AGG | + | chr4.4:30808218-30808237 | None:intergenic | 40.0% |
| !! | GAGGATCTACTCTGTTGTTT+TGG | + | chr4.4:30806574-30806593 | None:intergenic | 40.0% |
| AAAATGGTCGATGCCAGAAC+TGG | + | chr4.4:30806422-30806441 | None:intergenic | 45.0% | |
| AAAGCTGGTGCAGGAAATCA+AGG | - | chr4.4:30807735-30807754 | MS.gene56547:CDS | 45.0% | |
| AAGAAACACTGCCAAGTCCT+TGG | + | chr4.4:30807296-30807315 | None:intergenic | 45.0% | |
| AATCAAGGACGGACAGAAAG+TGG | - | chr4.4:30807750-30807769 | MS.gene56547:CDS | 45.0% | |
| ACTTATGACAAAGCTGGTGC+AGG | - | chr4.4:30807726-30807745 | MS.gene56547:CDS | 45.0% | |
| AGCTGCACTTATGACAAAGC+TGG | - | chr4.4:30807720-30807739 | MS.gene56547:CDS | 45.0% | |
| CAAGAATCAACTCAGCAGCA+AGG | + | chr4.4:30806535-30806554 | None:intergenic | 45.0% | |
| CAATGAAGTTGTGGCAACGA+TGG | - | chr4.4:30808065-30808084 | MS.gene56547:CDS | 45.0% | |
| CACATGTCACAAACAGCAGA+TGG | - | chr4.4:30806503-30806522 | MS.gene56547:CDS | 45.0% | |
| CATACCCAGTGACCATAGAA+TGG | + | chr4.4:30807900-30807919 | None:intergenic | 45.0% | |
| CATCAAGGAGATCATGTGCT+TGG | + | chr4.4:30807411-30807430 | None:intergenic | 45.0% | |
| CATCGTTGCCACAACTTCAT+TGG | + | chr4.4:30808067-30808086 | None:intergenic | 45.0% | |
| CCCTGCCAACGCAATATTAA+AGG | + | chr4.4:30806645-30806664 | None:intergenic | 45.0% | |
| CGGCATTTCTACTGGGATTT+AGG | - | chr4.4:30806054-30806073 | MS.gene56547:CDS | 45.0% | |
| CTCTTGCATCTGCCAAATTC+TGG | - | chr4.4:30806963-30806982 | MS.gene56547:CDS | 45.0% | |
| CTGGTAGTCTAACTTTCGCA+AGG | + | chr4.4:30806403-30806422 | None:intergenic | 45.0% | |
| CTTGGCAGTGTTTCTTCTCA+AGG | - | chr4.4:30807300-30807319 | MS.gene56547:CDS | 45.0% | |
| GCACGTGTATACGAGAGAAA+TGG | - | chr4.4:30806761-30806780 | MS.gene56547:CDS | 45.0% | |
| GTTGTGGCAACGATGGAAAA+AGG | - | chr4.4:30808072-30808091 | MS.gene56547:CDS | 45.0% | |
| TGAGGCAATGATCCAATCCA+AGG | - | chr4.4:30807576-30807595 | MS.gene56547:CDS | 45.0% | |
| TGGATTGTGGAGTTCATGAC+TGG | - | chr4.4:30807770-30807789 | MS.gene56547:CDS | 45.0% | |
| TTGCCACAACTTCATTGGCA+CGG | + | chr4.4:30808062-30808081 | None:intergenic | 45.0% | |
| ! | ACTTCTGAGAGATGCTAGGA+AGG | - | chr4.4:30807525-30807544 | MS.gene56547:CDS | 45.0% |
| ! | ATTTTCCTCCTGTCACTGCT+TGG | - | chr4.4:30806465-30806484 | MS.gene56547:CDS | 45.0% |
| ! | CATCACTTCTGAGAGATGCT+AGG | - | chr4.4:30807521-30807540 | MS.gene56547:CDS | 45.0% |
| ! | GCCTTTAATATTGCGTTGGC+AGG | - | chr4.4:30806641-30806660 | MS.gene56547:CDS | 45.0% |
| ! | TCAGCTTTGACACCAATTCG+AGG | + | chr4.4:30806719-30806738 | None:intergenic | 45.0% |
| ! | TTATCCACAGAAGCTGGTCT+AGG | + | chr4.4:30807022-30807041 | None:intergenic | 45.0% |
| !! | CAGCCCTGACTTTTAAAAGG+TGG | - | chr4.4:30808211-30808230 | MS.gene56547:CDS | 45.0% |
| ATCTGGAGGTAACAGAGCTG+TGG | - | chr4.4:30807938-30807957 | MS.gene56547:CDS | 50.0% | |
| CAGCTAGACGCATCTCATCA+AGG | + | chr4.4:30807426-30807445 | None:intergenic | 50.0% | |
| CATCCGTGCCAATGAAGTTG+TGG | - | chr4.4:30808056-30808075 | MS.gene56547:CDS | 50.0% | |
| CATTGGGGGGAAATATCTGG+AGG | - | chr4.4:30807924-30807943 | MS.gene56547:CDS | 50.0% | |
| CGTCTAGCTGGAGTTAGAAC+TGG | - | chr4.4:30807436-30807455 | MS.gene56547:CDS | 50.0% | |
| CTCCAGATATTTCCCCCCAA+TGG | + | chr4.4:30807926-30807945 | None:intergenic | 50.0% | |
| CTGGTGCAGGAAATCAAGGA+CGG | - | chr4.4:30807739-30807758 | MS.gene56547:CDS | 50.0% | |
| CTTGATGAGATGCGTCTAGC+TGG | - | chr4.4:30807424-30807443 | MS.gene56547:CDS | 50.0% | |
| GAGCAGCATAAGCACATGGA+GGG | - | chr4.4:30806218-30806237 | MS.gene56547:CDS | 50.0% | |
| GCGGAGTCAAAAGCTGTTCT+TGG | - | chr4.4:30807151-30807170 | MS.gene56547:CDS | 50.0% | |
| GGCTGAAAGAATCCTTGTCC+AGG | - | chr4.4:30806115-30806134 | MS.gene56547:CDS | 50.0% | |
| TCAACGATATTCTGGCACGC+TGG | - | chr4.4:30807672-30807691 | MS.gene56547:CDS | 50.0% | |
| TCACTGGGTATGCTGCCATT+GGG | - | chr4.4:30807908-30807927 | MS.gene56547:CDS | 50.0% | |
| TCTGGAGGTAACAGAGCTGT+GGG | - | chr4.4:30807939-30807958 | MS.gene56547:CDS | 50.0% | |
| TGAGCAGCATAAGCACATGG+AGG | - | chr4.4:30806217-30806236 | MS.gene56547:CDS | 50.0% | |
| TGCCATTGGGGGGAAATATC+TGG | - | chr4.4:30807921-30807940 | MS.gene56547:CDS | 50.0% | |
| TTCTCCTAGACCAGCTTCTG+TGG | - | chr4.4:30807015-30807034 | MS.gene56547:CDS | 50.0% | |
| TTTAGAGGCGGGTAAGACCA+AGG | - | chr4.4:30807276-30807295 | MS.gene56547:CDS | 50.0% | |
| ! | CACTGCTTGGTCTGCAGTTT+TGG | - | chr4.4:30806478-30806497 | MS.gene56547:CDS | 50.0% |
| ! | GTACAACGTGCTGGTGAAGA+TGG | - | chr4.4:30806329-30806348 | MS.gene56547:CDS | 50.0% |
| !! | GACGGACAGAAAGTGGATTG+TGG | - | chr4.4:30807757-30807776 | MS.gene56547:CDS | 50.0% |
| ACTGCAGACCAAGCAGTGAC+AGG | + | chr4.4:30806476-30806495 | None:intergenic | 55.0% | |
| ACTGGGTATGCTGCCATTGG+GGG | - | chr4.4:30807910-30807929 | MS.gene56547:CDS | 55.0% | |
| CACTGGGTATGCTGCCATTG+GGG | - | chr4.4:30807909-30807928 | MS.gene56547:CDS | 55.0% | |
| CTGAGAGATGCTAGGAAGGC+TGG | - | chr4.4:30807529-30807548 | MS.gene56547:CDS | 55.0% | |
| CTGGAGGTAACAGAGCTGTG+GGG | - | chr4.4:30807940-30807959 | MS.gene56547:CDS | 55.0% | |
| CTTTCGCAAGGCCGTAGCTA+AGG | + | chr4.4:30806391-30806410 | None:intergenic | 55.0% | |
| GTCACTGGGTATGCTGCCAT+TGG | - | chr4.4:30807907-30807926 | MS.gene56547:CDS | 55.0% | |
| GTGCTCCAGGAAGACACACA+GGG | - | chr4.4:30807598-30807617 | MS.gene56547:CDS | 55.0% | |
| ! | CTTCCTGGAGCACCTTGGAT+TGG | + | chr4.4:30807591-30807610 | None:intergenic | 55.0% |
| ! | GATCCAATCCAAGGTGCTCC+AGG | - | chr4.4:30807585-30807604 | MS.gene56547:CDS | 55.0% |
| ! | TGTGTCTTCCTGGAGCACCT+TGG | + | chr4.4:30807596-30807615 | None:intergenic | 55.0% |
| CCTTGTCCAGGCTCAAGACC+CGG | - | chr4.4:30806127-30806146 | MS.gene56547:CDS | 60.0% | |
| CTGGGTATGCTGCCATTGGG+GGG | - | chr4.4:30807911-30807930 | MS.gene56547:CDS | 60.0% | |
| GCAGACCAAGCAGTGACAGG+AGG | + | chr4.4:30806473-30806492 | None:intergenic | 60.0% | |
| GGCGGGTAAGACCAAGGACT+TGG | - | chr4.4:30807282-30807301 | MS.gene56547:CDS | 60.0% | |
| GGTGCTCCAGGAAGACACAC+AGG | - | chr4.4:30807597-30807616 | MS.gene56547:CDS | 60.0% | |
| GTGCTCCCTGTGTGTCTTCC+TGG | + | chr4.4:30807606-30807625 | None:intergenic | 60.0% | |
| CCGGGTCTTGAGCCTGGACA+AGG | + | chr4.4:30806130-30806149 | None:intergenic | 65.0% | |
| CTTTGGCCGGGTCTTGAGCC+TGG | + | chr4.4:30806136-30806155 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 30805951 | 30808248 | 30805951 | ID=MS.gene56547 |
| chr4.4 | mRNA | 30805951 | 30808248 | 30805951 | ID=MS.gene56547.t1;Parent=MS.gene56547 |
| chr4.4 | exon | 30805951 | 30808248 | 30805951 | ID=MS.gene56547.t1.exon1;Parent=MS.gene56547.t1 |
| chr4.4 | CDS | 30805951 | 30808248 | 30805951 | ID=cds.MS.gene56547.t1;Parent=MS.gene56547.t1 |
| Gene Sequence |
| Protein sequence |
