Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56789.t1 | RHN62947.1 | 89.4 | 320 | 6 | 2 | 1 | 292 | 12 | 331 | 1.70E-150 | 542 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56789.t1 | A0A396IJ55 | 89.4 | 320 | 6 | 2 | 1 | 292 | 12 | 331 | 1.3e-150 | 542.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052308 | MS.gene56789 | 0.810539 | 1.10E-50 | -1.69E-46 |
| MS.gene052367 | MS.gene56789 | 0.809213 | 2.11E-50 | -1.69E-46 |
| MS.gene054552 | MS.gene56789 | 0.800106 | 1.68E-48 | -1.69E-46 |
| MS.gene054593 | MS.gene56789 | 0.810437 | 1.15E-50 | -1.69E-46 |
| MS.gene054885 | MS.gene56789 | 0.81633 | 5.85E-52 | -1.69E-46 |
| MS.gene055308 | MS.gene56789 | 0.813885 | 2.04E-51 | -1.69E-46 |
| MS.gene055578 | MS.gene56789 | 0.808375 | 3.19E-50 | -1.69E-46 |
| MS.gene056041 | MS.gene56789 | 0.841001 | 6.19E-58 | -1.69E-46 |
| MS.gene05640 | MS.gene56789 | 0.807414 | 5.11E-50 | -1.69E-46 |
| MS.gene056526 | MS.gene56789 | 0.806816 | 6.84E-50 | -1.69E-46 |
| MS.gene057458 | MS.gene56789 | 0.805018 | 1.63E-49 | -1.69E-46 |
| MS.gene058128 | MS.gene56789 | 0.809588 | 1.76E-50 | -1.69E-46 |
| MS.gene059553 | MS.gene56789 | 0.800303 | 1.54E-48 | -1.69E-46 |
| MS.gene060473 | MS.gene56789 | 0.824786 | 6.68E-54 | -1.69E-46 |
| MS.gene060565 | MS.gene56789 | 0.802545 | 5.33E-49 | -1.69E-46 |
| MS.gene06093 | MS.gene56789 | 0.838479 | 2.81E-57 | -1.69E-46 |
| MS.gene061260 | MS.gene56789 | 0.809728 | 1.64E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56789.t1 | MTR_0154s0010 | 98.529 | 136 | 2 | 0 | 157 | 292 | 1 | 136 | 5.66e-97 | 281 |
| MS.gene56789.t1 | MTR_4g094800 | 85.906 | 149 | 17 | 2 | 1 | 148 | 12 | 157 | 9.36e-86 | 254 |
| MS.gene56789.t1 | MTR_6g081930 | 44.785 | 326 | 113 | 9 | 1 | 291 | 1 | 294 | 1.69e-75 | 233 |
| MS.gene56789.t1 | MTR_8g106580 | 46.855 | 318 | 120 | 6 | 1 | 291 | 1 | 296 | 8.97e-73 | 226 |
| MS.gene56789.t1 | MTR_2g101870 | 39.185 | 319 | 151 | 12 | 3 | 291 | 4 | 309 | 3.86e-57 | 186 |
| MS.gene56789.t1 | MTR_4g075730 | 40.061 | 327 | 146 | 11 | 1 | 291 | 6 | 318 | 2.29e-51 | 171 |
| MS.gene56789.t1 | MTR_3g037650 | 40.449 | 267 | 116 | 8 | 59 | 288 | 9 | 269 | 1.04e-46 | 158 |
| MS.gene56789.t1 | MTR_6g087880 | 37.538 | 325 | 152 | 10 | 1 | 292 | 1 | 307 | 2.32e-45 | 155 |
| MS.gene56789.t1 | MTR_8g086610 | 40.845 | 142 | 80 | 2 | 152 | 291 | 140 | 279 | 4.55e-29 | 112 |
| MS.gene56789.t1 | MTR_4g075730 | 40.000 | 230 | 90 | 10 | 1 | 196 | 6 | 221 | 1.01e-21 | 91.7 |
| MS.gene56789.t1 | MTR_3g033530 | 27.869 | 122 | 84 | 3 | 153 | 273 | 211 | 329 | 5.30e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56789.t1 | AT1G45688 | 47.826 | 345 | 117 | 9 | 1 | 289 | 1 | 338 | 7.15e-81 | 248 |
| MS.gene56789.t1 | AT5G42860 | 45.104 | 337 | 116 | 8 | 1 | 289 | 1 | 316 | 6.26e-76 | 234 |
| MS.gene56789.t1 | AT1G45688 | 43.825 | 251 | 83 | 8 | 1 | 206 | 1 | 238 | 2.40e-55 | 179 |
| MS.gene56789.t1 | AT4G35170 | 33.550 | 307 | 155 | 8 | 15 | 289 | 8 | 297 | 1.92e-39 | 140 |
| MS.gene56789.t1 | AT2G41990 | 36.278 | 317 | 151 | 8 | 1 | 288 | 1 | 295 | 1.96e-39 | 140 |
| MS.gene56789.t1 | AT3G24600 | 30.312 | 320 | 168 | 8 | 1 | 287 | 2 | 299 | 7.36e-26 | 104 |
| MS.gene56789.t1 | AT3G24605 | 27.152 | 302 | 168 | 8 | 1 | 273 | 3 | 281 | 1.60e-23 | 97.8 |
Find 76 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAAGTGGGCTTGAGTTAA+AGG | 0.197154 | 8.2:-25555477 | None:intergenic |
| GATTATGGATCCGAAGAAAA+TGG | 0.228318 | 8.2:+25556826 | MS.gene56789:CDS |
| ACCATTGACATTGAATATTA+TGG | 0.231681 | 8.2:+25556733 | MS.gene56789:CDS |
| GCCAATTACCTTTCCTGTTA+TGG | 0.240601 | 8.2:-25555610 | None:intergenic |
| AGGTCAAAAGCTTATGTATT+AGG | 0.241379 | 8.2:+25556758 | MS.gene56789:CDS |
| CCAATTACCTTTCCTGTTAT+GGG | 0.301565 | 8.2:-25555609 | None:intergenic |
| AATTGAGTGTGCATTGATTA+TGG | 0.311781 | 8.2:+25556811 | MS.gene56789:CDS |
| GGAAGTCATATTCCACTATA+TGG | 0.335033 | 8.2:+25556662 | MS.gene56789:CDS |
| CCCATAACAGGAAAGGTAAT+TGG | 0.338006 | 8.2:+25555609 | MS.gene56789:CDS |
| GGTCAAAAGCTTATGTATTA+GGG | 0.353077 | 8.2:+25556759 | MS.gene56789:CDS |
| GCAGTCAAGCTTCCCATAAC+AGG | 0.360744 | 8.2:+25555597 | MS.gene56789:CDS |
| CTTACGTGAGGCAGAGTATC+TGG | 0.380691 | 8.2:-25555573 | None:intergenic |
| TGGTAATAATTGAGATCTAA+TGG | 0.385611 | 8.2:-25556477 | None:intergenic |
| TACCAACTTACACTAGCAAC+TGG | 0.405417 | 8.2:+25556495 | MS.gene56789:CDS |
| TCTCATTCCAACTCGTCGTT+GGG | 0.408279 | 8.2:+25555524 | MS.gene56789:CDS |
| GTCAATGGTACCGGTTCAAC+CGG | 0.412848 | 8.2:-25556719 | None:intergenic |
| CAATGGTTCACCGGTTGAAC+CGG | 0.415899 | 8.2:+25556709 | MS.gene56789:CDS |
| AAGAAGCCCTTCTTCTTCAA+TGG | 0.421198 | 8.2:-25555657 | None:intergenic |
| CACTTGTTGGTAAGTCGAAT+AGG | 0.431111 | 8.2:-25556854 | None:intergenic |
| AGCTTATGTATTAGGGGCAT+TGG | 0.433647 | 8.2:+25556766 | MS.gene56789:CDS |
| GGAAAGGTAATTGGCGTCCT+TGG | 0.434224 | 8.2:+25555618 | MS.gene56789:CDS |
| TTTCTTGATTGATAAAACTT+AGG | 0.441416 | 8.2:-25556608 | None:intergenic |
| TTCTCATTCCAACTCGTCGT+TGG | 0.441548 | 8.2:+25555523 | MS.gene56789:CDS |
| GCAGGAAAATAGCATCTCCT+AGG | 0.445069 | 8.2:-25555710 | None:intergenic |
| TAACTCATACGTACACTTGT+TGG | 0.455029 | 8.2:-25556867 | None:intergenic |
| GCTTACCTCGGAGTCTGTCT+TGG | 0.474995 | 8.2:-25555345 | None:intergenic |
| TTTAATGCCATTGAAGAAGA+AGG | 0.476425 | 8.2:+25555650 | MS.gene56789:CDS |
| AGCCCACTTCAAAGCCCGTT+GGG | 0.480036 | 8.2:+25555488 | MS.gene56789:CDS |
| AAGAAACAAACAAGAAAAGC+AGG | 0.481474 | 8.2:-25555728 | None:intergenic |
| ATTATGGATCCGAAGAAAAT+GGG | 0.484777 | 8.2:+25556827 | MS.gene56789:CDS |
| CGTTGGAAGAGTCGCGTGAT+GGG | 0.507373 | 8.2:-25555433 | None:intergenic |
| AATGAGGAGGAGATCCCAAC+GGG | 0.512593 | 8.2:-25555502 | None:intergenic |
| TTCCAGTTGCTAGTGTAAGT+TGG | 0.513143 | 8.2:-25556497 | None:intergenic |
| ACCATAATATTCAATGTCAA+TGG | 0.513438 | 8.2:-25556734 | None:intergenic |
| GAGGAAGATTCACGTGAATG+TGG | 0.516881 | 8.2:-25555548 | None:intergenic |
| AGGTAATTGGCGTCCTTGGA+AGG | 0.521480 | 8.2:+25555622 | MS.gene56789:CDS |
| TCGTTGGAAGAGTCGCGTGA+TGG | 0.526058 | 8.2:-25555434 | None:intergenic |
| TTAATGCCATTGAAGAAGAA+GGG | 0.527012 | 8.2:+25555651 | MS.gene56789:CDS |
| TCTATTAAAGTGATGGTGAA+AGG | 0.536712 | 8.2:+25556641 | MS.gene56789:CDS |
| GCAAGATTGAACACTATCAA+TGG | 0.537446 | 8.2:+25556692 | MS.gene56789:CDS |
| ATATTCAATGTCAATGGTAC+CGG | 0.541625 | 8.2:-25556728 | None:intergenic |
| TTGTCGGTGAGGAATGTGTT+AGG | 0.545059 | 8.2:-25555370 | None:intergenic |
| TCAAAGATCTATTAAAGTGA+TGG | 0.545202 | 8.2:+25556634 | MS.gene56789:CDS |
| GAACACTATCAATGGTTCAC+CGG | 0.546796 | 8.2:+25556700 | MS.gene56789:CDS |
| ATGCAGATCGTGGATTCCCT+AGG | 0.552676 | 8.2:+25555693 | MS.gene56789:CDS |
| GTCAGGAGTTGCCACTAGCA+TGG | 0.553632 | 8.2:+25556380 | MS.gene56789:intron |
| ATCCCAACGGGCTTTGAAGT+GGG | 0.555397 | 8.2:-25555490 | None:intergenic |
| GATCCCAACGGGCTTTGAAG+TGG | 0.558461 | 8.2:-25555491 | None:intergenic |
| AGCCCATCACGTGATCTTGT+CGG | 0.561235 | 8.2:-25555386 | None:intergenic |
| GTCATATTCCACTATATGGA+GGG | 0.565203 | 8.2:+25556666 | MS.gene56789:CDS |
| AAGCCCACTTCAAAGCCCGT+TGG | 0.565440 | 8.2:+25555487 | MS.gene56789:CDS |
| GACGAGTTGGAATGAGAATG+AGG | 0.572775 | 8.2:-25555518 | None:intergenic |
| CAGGAAAATAGCATCTCCTA+GGG | 0.584033 | 8.2:-25555709 | None:intergenic |
| TGAGGCAGAGTATCTGGTGG+AGG | 0.589653 | 8.2:-25555567 | None:intergenic |
| ATGTGTTAGGCTGCTTACCT+CGG | 0.590945 | 8.2:-25555357 | None:intergenic |
| CACCGACAAGATCACGTGAT+GGG | 0.601025 | 8.2:+25555384 | MS.gene56789:CDS |
| TCATATTCCACTATATGGAG+GGG | 0.602380 | 8.2:+25556667 | MS.gene56789:CDS |
| CAAGCTTCCCATAACAGGAA+AGG | 0.602700 | 8.2:+25555602 | MS.gene56789:CDS |
| CATATTCCACTATATGGAGG+GGG | 0.611721 | 8.2:+25556668 | MS.gene56789:CDS |
| GCATTAAACTGATCCTTCCA+AGG | 0.614580 | 8.2:-25555635 | None:intergenic |
| AGTCATATTCCACTATATGG+AGG | 0.618199 | 8.2:+25556665 | MS.gene56789:CDS |
| ATTCATGGACACCATGCTAG+TGG | 0.619012 | 8.2:-25556391 | None:intergenic |
| ATGTGGGCCCAACGACGAGT+TGG | 0.620193 | 8.2:-25555531 | None:intergenic |
| TGACATTGAATATTATGGTG+AGG | 0.620220 | 8.2:+25556738 | MS.gene56789:CDS |
| CTAATGGAGATGATGCAACA+TGG | 0.632609 | 8.2:-25556461 | None:intergenic |
| AGGAAGATTCACGTGAATGT+GGG | 0.636052 | 8.2:-25555547 | None:intergenic |
| GTCAAAAGCTTATGTATTAG+GGG | 0.642134 | 8.2:+25556760 | MS.gene56789:CDS |
| GATGATGATGATGCAGATCG+TGG | 0.642710 | 8.2:+25555683 | MS.gene56789:CDS |
| ATCACGTGATCTTGTCGGTG+AGG | 0.644471 | 8.2:-25555381 | None:intergenic |
| AGCTTGACTGCTCTTACGTG+AGG | 0.648575 | 8.2:-25555585 | None:intergenic |
| TCACCGACAAGATCACGTGA+TGG | 0.649203 | 8.2:+25555383 | MS.gene56789:CDS |
| GAATGAGGAGGAGATCCCAA+CGG | 0.666085 | 8.2:-25555503 | None:intergenic |
| ACGTGAGGCAGAGTATCTGG+TGG | 0.711321 | 8.2:-25555570 | None:intergenic |
| TCACGCGACTCTTCCAACGA+CGG | 0.716008 | 8.2:+25555437 | MS.gene56789:CDS |
| GTTAGCCAAGACAGACTCCG+AGG | 0.733209 | 8.2:+25555340 | MS.gene56789:CDS |
| GAGTTGGAATGAGAATGAGG+AGG | 0.746577 | 8.2:-25555515 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATCATGTATTATATTATA+TGG | + | chr8.2:25556565-25556584 | MS.gene56789:intron | 10.0% |
| !! | ATTGAAAAATCAACATTATA+TGG | - | chr8.2:25556248-25556267 | None:intergenic | 15.0% |
| !! | ATCATTTCTAATTTCAATGT+AGG | + | chr8.2:25555834-25555853 | MS.gene56789:intron | 20.0% |
| !! | TACATTGAAATTAGAAATGA+TGG | - | chr8.2:25555835-25555854 | None:intergenic | 20.0% |
| !! | TTTCTTGATTGATAAAACTT+AGG | - | chr8.2:25556611-25556630 | None:intergenic | 20.0% |
| !!! | CTTTTATTTGAATGCATATT+TGG | - | chr8.2:25556087-25556106 | None:intergenic | 20.0% |
| !!! | TTTTAATTATAGTCACAATG+TGG | - | chr8.2:25556164-25556183 | None:intergenic | 20.0% |
| ! | ACCATAATATTCAATGTCAA+TGG | - | chr8.2:25556737-25556756 | None:intergenic | 25.0% |
| ! | ACCATTGACATTGAATATTA+TGG | + | chr8.2:25556733-25556752 | MS.gene56789:CDS | 25.0% |
| ! | AGATAAATCTGTATTTGAAG+TGG | + | chr8.2:25556183-25556202 | MS.gene56789:intron | 25.0% |
| ! | TCAAAGATCTATTAAAGTGA+TGG | + | chr8.2:25556634-25556653 | MS.gene56789:CDS | 25.0% |
| ! | TGATAGATTTATCATTCAAG+CGG | + | chr8.2:25556347-25556366 | MS.gene56789:intron | 25.0% |
| ! | TGGTAATAATTGAGATCTAA+TGG | - | chr8.2:25556480-25556499 | None:intergenic | 25.0% |
| !! | GATAAATCTGTATTTGAAGT+GGG | + | chr8.2:25556184-25556203 | MS.gene56789:intron | 25.0% |
| !! | TCAATTTTCTTGTTGAACTT+TGG | - | chr8.2:25556797-25556816 | None:intergenic | 25.0% |
| !!! | TTGTTTTGTGTATGTATGTT+TGG | + | chr8.2:25556310-25556329 | MS.gene56789:intron | 25.0% |
| AAGAAACAAACAAGAAAAGC+AGG | - | chr8.2:25555731-25555750 | None:intergenic | 30.0% | |
| AAGTTGTCACAATTGTTCTT+TGG | + | chr8.2:25556104-25556123 | MS.gene56789:intron | 30.0% | |
| AGGTCAAAAGCTTATGTATT+AGG | + | chr8.2:25556758-25556777 | MS.gene56789:CDS | 30.0% | |
| ATATTCAATGTCAATGGTAC+CGG | - | chr8.2:25556731-25556750 | None:intergenic | 30.0% | |
| ATTATGGATCCGAAGAAAAT+GGG | + | chr8.2:25556827-25556846 | MS.gene56789:CDS | 30.0% | |
| CAACATTATATGGAAAACCA+CGG | - | chr8.2:25556238-25556257 | None:intergenic | 30.0% | |
| GAGAAATACCTTGAGAAAAA+TGG | - | chr8.2:25555813-25555832 | None:intergenic | 30.0% | |
| GATAGATTTATCATTCAAGC+GGG | + | chr8.2:25556348-25556367 | MS.gene56789:intron | 30.0% | |
| GGTCAAAAGCTTATGTATTA+GGG | + | chr8.2:25556759-25556778 | MS.gene56789:CDS | 30.0% | |
| GTCAAAAGCTTATGTATTAG+GGG | + | chr8.2:25556760-25556779 | MS.gene56789:CDS | 30.0% | |
| TGACATTGAATATTATGGTG+AGG | + | chr8.2:25556738-25556757 | MS.gene56789:CDS | 30.0% | |
| TTAATGCCATTGAAGAAGAA+GGG | + | chr8.2:25555651-25555670 | MS.gene56789:CDS | 30.0% | |
| TTTAATGCCATTGAAGAAGA+AGG | + | chr8.2:25555650-25555669 | MS.gene56789:CDS | 30.0% | |
| TTTAGATTCACAGAATGACA+TGG | + | chr8.2:25555869-25555888 | MS.gene56789:intron | 30.0% | |
| ! | TCTATTAAAGTGATGGTGAA+AGG | + | chr8.2:25556641-25556660 | MS.gene56789:CDS | 30.0% |
| ! | TGTTTTCTCTCTCATTCTTT+GGG | + | chr8.2:25555763-25555782 | MS.gene56789:CDS | 30.0% |
| !! | AATTGAGTGTGCATTGATTA+TGG | + | chr8.2:25556811-25556830 | MS.gene56789:CDS | 30.0% |
| !!! | AAACACTGCAACATTTTTTG+GGG | + | chr8.2:25556437-25556456 | MS.gene56789:CDS | 30.0% |
| !!! | AGAAACACTGCAACATTTTT+TGG | + | chr8.2:25556435-25556454 | MS.gene56789:CDS | 30.0% |
| !!! | GAAACACTGCAACATTTTTT+GGG | + | chr8.2:25556436-25556455 | MS.gene56789:CDS | 30.0% |
| !!! | TCTAAATGTCATTTTCACAG+TGG | - | chr8.2:25556418-25556437 | None:intergenic | 30.0% |
| AATACCTTGAGAAAAATGGC+AGG | - | chr8.2:25555809-25555828 | None:intergenic | 35.0% | |
| AGTCATATTCCACTATATGG+AGG | + | chr8.2:25556665-25556684 | MS.gene56789:CDS | 35.0% | |
| CCAATTACCTTTCCTGTTAT+GGG | - | chr8.2:25555612-25555631 | None:intergenic | 35.0% | |
| GATTATGGATCCGAAGAAAA+TGG | + | chr8.2:25556826-25556845 | MS.gene56789:CDS | 35.0% | |
| GCAAGATTGAACACTATCAA+TGG | + | chr8.2:25556692-25556711 | MS.gene56789:CDS | 35.0% | |
| GGAAAACCACGGTATTAAAT+GGG | - | chr8.2:25556227-25556246 | None:intergenic | 35.0% | |
| GGAAGTCATATTCCACTATA+TGG | + | chr8.2:25556662-25556681 | MS.gene56789:CDS | 35.0% | |
| GTATTTCCCATTTAATACCG+TGG | + | chr8.2:25556218-25556237 | MS.gene56789:intron | 35.0% | |
| GTCATATTCCACTATATGGA+GGG | + | chr8.2:25556666-25556685 | MS.gene56789:CDS | 35.0% | |
| TAACTCATACGTACACTTGT+TGG | - | chr8.2:25556870-25556889 | None:intergenic | 35.0% | |
| TCATATTCCACTATATGGAG+GGG | + | chr8.2:25556667-25556686 | MS.gene56789:CDS | 35.0% | |
| TGGAAAACCACGGTATTAAA+TGG | - | chr8.2:25556228-25556247 | None:intergenic | 35.0% | |
| ! | AGAAAAATGGCAGGTTTTTG+AGG | - | chr8.2:25555800-25555819 | None:intergenic | 35.0% |
| ! | ATAGGCTTACCCATTTTCTT+CGG | - | chr8.2:25556839-25556858 | None:intergenic | 35.0% |
| ! | CATTTTCACAGTGGAATTCA+TGG | - | chr8.2:25556409-25556428 | None:intergenic | 35.0% |
| ! | CTGTTTTCTCTCTCATTCTT+TGG | + | chr8.2:25555762-25555781 | MS.gene56789:CDS | 35.0% |
| ! | GAAAAATGGCAGGTTTTTGA+GGG | - | chr8.2:25555799-25555818 | None:intergenic | 35.0% |
| !! | GTAATCAGAAGTGTCGATAT+CGG | - | chr8.2:25555980-25555999 | None:intergenic | 35.0% |
| !!! | AAAACCTGCCATTTTTCTCA+AGG | + | chr8.2:25555802-25555821 | MS.gene56789:intron | 35.0% |
| AAGAAGCCCTTCTTCTTCAA+TGG | - | chr8.2:25555660-25555679 | None:intergenic | 40.0% | |
| AGGAAGATTCACGTGAATGT+GGG | - | chr8.2:25555550-25555569 | None:intergenic | 40.0% | |
| ATTTATCATTCAAGCGGGTG+CGG | + | chr8.2:25556353-25556372 | MS.gene56789:intron | 40.0% | |
| CAGGAAAATAGCATCTCCTA+GGG | - | chr8.2:25555712-25555731 | None:intergenic | 40.0% | |
| CATATTCCACTATATGGAGG+GGG | + | chr8.2:25556668-25556687 | MS.gene56789:CDS | 40.0% | |
| CCCATAACAGGAAAGGTAAT+TGG | + | chr8.2:25555609-25555628 | MS.gene56789:CDS | 40.0% | |
| CTAATGGAGATGATGCAACA+TGG | - | chr8.2:25556464-25556483 | None:intergenic | 40.0% | |
| GAACACTATCAATGGTTCAC+CGG | + | chr8.2:25556700-25556719 | MS.gene56789:CDS | 40.0% | |
| GCATTAAACTGATCCTTCCA+AGG | - | chr8.2:25555638-25555657 | None:intergenic | 40.0% | |
| GCCAATTACCTTTCCTGTTA+TGG | - | chr8.2:25555613-25555632 | None:intergenic | 40.0% | |
| TACCAACTTACACTAGCAAC+TGG | + | chr8.2:25556495-25556514 | MS.gene56789:CDS | 40.0% | |
| TCGATATCGGACATAGACAT+CGG | - | chr8.2:25555967-25555986 | None:intergenic | 40.0% | |
| TTCCAGTTGCTAGTGTAAGT+TGG | - | chr8.2:25556500-25556519 | None:intergenic | 40.0% | |
| ! | AGCTTATGTATTAGGGGCAT+TGG | + | chr8.2:25556766-25556785 | MS.gene56789:CDS | 40.0% |
| ! | CACTTGTTGGTAAGTCGAAT+AGG | - | chr8.2:25556857-25556876 | None:intergenic | 40.0% |
| ! | TTGAAGTGGGCTTGAGTTAA+AGG | - | chr8.2:25555480-25555499 | None:intergenic | 40.0% |
| !! | CAGTAATGAAGCACTGACAT+CGG | - | chr8.2:25556059-25556078 | None:intergenic | 40.0% |
| ATGTGTTAGGCTGCTTACCT+CGG | - | chr8.2:25555360-25555379 | None:intergenic | 45.0% | |
| ATTCATGGACACCATGCTAG+TGG | - | chr8.2:25556394-25556413 | None:intergenic | 45.0% | |
| CAAGCTTCCCATAACAGGAA+AGG | + | chr8.2:25555602-25555621 | MS.gene56789:CDS | 45.0% | |
| CATCGGGACAAAGAGATTGA+CGG | - | chr8.2:25555950-25555969 | None:intergenic | 45.0% | |
| CGATATCGGACATAGACATC+GGG | - | chr8.2:25555966-25555985 | None:intergenic | 45.0% | |
| GAGGAAGATTCACGTGAATG+TGG | - | chr8.2:25555551-25555570 | None:intergenic | 45.0% | |
| GAGTTGGAATGAGAATGAGG+AGG | - | chr8.2:25555518-25555537 | None:intergenic | 45.0% | |
| GCAGGAAAATAGCATCTCCT+AGG | - | chr8.2:25555713-25555732 | None:intergenic | 45.0% | |
| TCTCATTCCAACTCGTCGTT+GGG | + | chr8.2:25555524-25555543 | MS.gene56789:CDS | 45.0% | |
| TTCTCATTCCAACTCGTCGT+TGG | + | chr8.2:25555523-25555542 | MS.gene56789:CDS | 45.0% | |
| TTGTCGGTGAGGAATGTGTT+AGG | - | chr8.2:25555373-25555392 | None:intergenic | 45.0% | |
| ! | GACGAGTTGGAATGAGAATG+AGG | - | chr8.2:25555521-25555540 | None:intergenic | 45.0% |
| ! | GATGATGATGATGCAGATCG+TGG | + | chr8.2:25555683-25555702 | MS.gene56789:CDS | 45.0% |
| !!! | TGTTGTTTTCTCACCGTCGT+TGG | - | chr8.2:25555453-25555472 | None:intergenic | 45.0% |
| AATGAGGAGGAGATCCCAAC+GGG | - | chr8.2:25555505-25555524 | None:intergenic | 50.0% | |
| AGCCCATCACGTGATCTTGT+CGG | - | chr8.2:25555389-25555408 | None:intergenic | 50.0% | |
| AGCTTGACTGCTCTTACGTG+AGG | - | chr8.2:25555588-25555607 | None:intergenic | 50.0% | |
| AGGTAATTGGCGTCCTTGGA+AGG | + | chr8.2:25555622-25555641 | MS.gene56789:CDS | 50.0% | |
| ATCACGTGATCTTGTCGGTG+AGG | - | chr8.2:25555384-25555403 | None:intergenic | 50.0% | |
| ATGCAGATCGTGGATTCCCT+AGG | + | chr8.2:25555693-25555712 | MS.gene56789:CDS | 50.0% | |
| CACCGACAAGATCACGTGAT+GGG | + | chr8.2:25555384-25555403 | MS.gene56789:CDS | 50.0% | |
| GAATGAGGAGGAGATCCCAA+CGG | - | chr8.2:25555506-25555525 | None:intergenic | 50.0% | |
| GCAGTCAAGCTTCCCATAAC+AGG | + | chr8.2:25555597-25555616 | MS.gene56789:CDS | 50.0% | |
| GGAAAGGTAATTGGCGTCCT+TGG | + | chr8.2:25555618-25555637 | MS.gene56789:CDS | 50.0% | |
| TCACCGACAAGATCACGTGA+TGG | + | chr8.2:25555383-25555402 | MS.gene56789:CDS | 50.0% | |
| ! | CAATGGTTCACCGGTTGAAC+CGG | + | chr8.2:25556709-25556728 | MS.gene56789:CDS | 50.0% |
| ! | CTTACGTGAGGCAGAGTATC+TGG | - | chr8.2:25555576-25555595 | None:intergenic | 50.0% |
| !! | ATCCCAACGGGCTTTGAAGT+GGG | - | chr8.2:25555493-25555512 | None:intergenic | 50.0% |
| !! | GTCAATGGTACCGGTTCAAC+CGG | - | chr8.2:25556722-25556741 | None:intergenic | 50.0% |
| AAGCCCACTTCAAAGCCCGT+TGG | + | chr8.2:25555487-25555506 | MS.gene56789:CDS | 55.0% | |
| AGCCCACTTCAAAGCCCGTT+GGG | + | chr8.2:25555488-25555507 | MS.gene56789:CDS | 55.0% | |
| CGTTGGAAGAGTCGCGTGAT+GGG | - | chr8.2:25555436-25555455 | None:intergenic | 55.0% | |
| CTTGCTCCCCCTCCATATAG+TGG | - | chr8.2:25556677-25556696 | None:intergenic | 55.0% | |
| GCTTACCTCGGAGTCTGTCT+TGG | - | chr8.2:25555348-25555367 | None:intergenic | 55.0% | |
| GTCAGGAGTTGCCACTAGCA+TGG | + | chr8.2:25556380-25556399 | MS.gene56789:intron | 55.0% | |
| GTTAGCCAAGACAGACTCCG+AGG | + | chr8.2:25555340-25555359 | MS.gene56789:CDS | 55.0% | |
| TCACGCGACTCTTCCAACGA+CGG | + | chr8.2:25555437-25555456 | MS.gene56789:CDS | 55.0% | |
| TCGTTGGAAGAGTCGCGTGA+TGG | - | chr8.2:25555437-25555456 | None:intergenic | 55.0% | |
| ! | ACGTGAGGCAGAGTATCTGG+TGG | - | chr8.2:25555573-25555592 | None:intergenic | 55.0% |
| ! | TGAGGCAGAGTATCTGGTGG+AGG | - | chr8.2:25555570-25555589 | None:intergenic | 55.0% |
| !! | GATCCCAACGGGCTTTGAAG+TGG | - | chr8.2:25555494-25555513 | None:intergenic | 55.0% |
| ATGTGGGCCCAACGACGAGT+TGG | - | chr8.2:25555534-25555553 | None:intergenic | 60.0% | |
| CAAGCGGGTGCGGATTTGTC+AGG | + | chr8.2:25556363-25556382 | MS.gene56789:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 25555338 | 25556892 | 25555338 | ID=MS.gene56789 |
| chr8.2 | mRNA | 25555338 | 25556892 | 25555338 | ID=MS.gene56789.t1;Parent=MS.gene56789 |
| chr8.2 | exon | 25555338 | 25555791 | 25555338 | ID=MS.gene56789.t1.exon1;Parent=MS.gene56789.t1 |
| chr8.2 | CDS | 25555338 | 25555791 | 25555338 | ID=cds.MS.gene56789.t1;Parent=MS.gene56789.t1 |
| chr8.2 | exon | 25556385 | 25556521 | 25556385 | ID=MS.gene56789.t1.exon2;Parent=MS.gene56789.t1 |
| chr8.2 | CDS | 25556385 | 25556521 | 25556385 | ID=cds.MS.gene56789.t1;Parent=MS.gene56789.t1 |
| chr8.2 | exon | 25556605 | 25556892 | 25556605 | ID=MS.gene56789.t1.exon3;Parent=MS.gene56789.t1 |
| chr8.2 | CDS | 25556605 | 25556892 | 25556605 | ID=cds.MS.gene56789.t1;Parent=MS.gene56789.t1 |
| Gene Sequence |
| Protein sequence |
