AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene57130

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene57130.t1 MTR_6g008170 94.886 528 23 1 1 528 31 554 0.0 898
MS.gene57130.t1 MTR_3g078340 48.694 536 246 10 2 525 8 526 3.79e-150 441
MS.gene57130.t1 MTR_4g063800 29.808 312 213 4 188 496 329 637 7.97e-32 130
MS.gene57130.t1 MTR_4g063800 24.611 386 241 11 22 387 256 611 8.55e-13 71.2
MS.gene57130.t1 MTR_4g485520 26.978 278 198 3 213 488 206 480 3.66e-27 115
MS.gene57130.t1 MTR_1g094215 29.642 307 211 3 189 493 139 442 5.26e-27 114
MS.gene57130.t1 MTR_4g485520 26.978 278 198 3 213 488 374 648 1.02e-26 114
MS.gene57130.t1 MTR_3g466220 28.716 296 202 3 200 489 515 807 2.34e-26 114
MS.gene57130.t1 MTR_1g094215 29.642 307 211 3 189 493 322 625 2.53e-26 113
MS.gene57130.t1 MTR_3g466220 28.716 296 202 3 200 489 536 828 3.31e-26 113
MS.gene57130.t1 MTR_7g097020 28.185 259 178 3 234 489 504 757 2.85e-23 104
MS.gene57130.t1 MTR_1g069845 27.431 288 201 3 205 489 316 598 4.56e-23 103
MS.gene57130.t1 MTR_7g059405 27.668 253 180 1 234 486 383 632 5.78e-23 103
MS.gene57130.t1 MTR_1g069845 27.431 288 201 3 205 489 433 715 7.81e-23 103
MS.gene57130.t1 MTR_1g069845 27.431 288 201 3 205 489 437 719 8.21e-23 102
MS.gene57130.t1 MTR_7g078330 27.799 259 182 2 234 490 389 644 1.71e-22 101
MS.gene57130.t1 MTR_5g083030 25.591 465 226 14 7 454 265 626 6.76e-21 97.1
MS.gene57130.t1 MTR_1g018180 23.466 277 207 2 214 488 63 336 2.35e-18 87.0
MS.gene57130.t1 MTR_3g103050 22.761 268 196 4 228 488 67 330 1.01e-15 79.0
MS.gene57130.t1 MTR_7g053260 25.893 224 162 3 263 484 226 447 2.76e-14 75.5
MS.gene57130.t1 MTR_2g026130 26.578 301 207 4 201 492 159 454 5.12e-14 74.7
MS.gene57130.t1 MTR_7g116600 26.168 214 154 3 273 484 237 448 2.23e-12 69.7
MS.gene57130.t1 MTR_2g018010 24.375 320 215 11 188 490 368 677 1.93e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene57130.t1 AT5G40140 49.612 516 227 9 22 528 59 550 1.47e-145 429
MS.gene57130.t1 AT5G65200 43.019 530 246 12 21 514 33 542 1.50e-123 374
MS.gene57130.t1 AT5G62560 48.485 330 157 5 209 528 233 559 6.94e-88 281
MS.gene57130.t1 AT5G62560 61.429 70 27 0 22 91 32 101 2.09e-23 104
MS.gene57130.t1 AT5G67340 25.105 478 325 9 22 487 241 697 1.07e-30 127
MS.gene57130.t1 AT5G67340 25.105 478 325 9 22 487 241 697 1.07e-30 127
MS.gene57130.t1 AT3G46510 24.490 490 259 11 22 499 257 647 2.83e-29 122
MS.gene57130.t1 AT2G23140 28.417 278 195 2 213 489 355 629 5.66e-28 118
MS.gene57130.t1 AT2G23140 28.417 278 195 2 213 489 355 629 5.66e-28 118
MS.gene57130.t1 AT2G23140 28.417 278 195 2 213 489 544 818 1.66e-27 117
MS.gene57130.t1 AT2G23140 28.417 278 195 2 213 489 544 818 1.66e-27 117
MS.gene57130.t1 AT2G23140 28.417 278 195 2 213 489 547 821 1.73e-27 117
MS.gene57130.t1 AT1G23030 26.744 258 183 2 234 488 355 609 2.18e-24 107
MS.gene57130.t1 AT1G23030 25.436 401 246 14 7 387 225 592 1.28e-13 73.9
MS.gene57130.t1 AT3G54850 29.730 259 177 3 234 490 369 624 7.57e-24 105
MS.gene57130.t1 AT3G47820 51.648 91 39 2 2 87 8 98 1.59e-23 104
MS.gene57130.t1 AT2G28830 28.986 276 187 5 213 483 286 557 1.77e-23 104
MS.gene57130.t1 AT2G28830 24.806 387 250 10 19 387 182 545 2.60e-15 79.3
MS.gene57130.t1 AT1G71020 26.259 278 198 3 215 488 198 472 2.56e-21 97.4
MS.gene57130.t1 AT1G71020 26.259 278 198 3 215 488 346 620 5.12e-21 97.1
MS.gene57130.t1 AT3G54790 26.357 258 185 3 234 489 460 714 3.42e-20 94.7
MS.gene57130.t1 AT3G54790 26.357 258 185 3 234 489 496 750 3.48e-20 94.7
MS.gene57130.t1 AT3G54790 26.357 258 185 3 234 489 496 750 3.48e-20 94.7
MS.gene57130.t1 AT5G42340 28.846 260 178 3 234 490 403 658 1.20e-19 93.2
MS.gene57130.t1 AT3G01400 23.485 264 195 3 228 488 81 340 4.49e-18 86.3
MS.gene57130.t1 AT5G58680 25.660 265 189 4 228 488 79 339 7.59e-17 82.8
MS.gene57130.t1 AT3G07360 22.410 473 266 14 22 488 75 452 1.20e-14 76.6
MS.gene57130.t1 AT4G16490 26.403 303 207 5 201 492 169 466 1.72e-13 73.2
MS.gene57130.t1 AT3G07360 24.229 227 167 3 265 488 93 317 2.81e-12 68.6
MS.gene57130.t1 AT3G07360 24.229 227 167 3 265 488 93 317 2.81e-12 68.6
MS.gene57130.t1 AT3G07360 24.229 227 167 3 265 488 93 317 2.81e-12 68.6
MS.gene57130.t1 AT3G07360 24.229 227 167 3 265 488 93 317 2.81e-12 68.6
MS.gene57130.t1 AT3G07360 24.229 227 167 3 265 488 93 317 2.81e-12 68.6
MS.gene57130.t1 AT3G07360 24.229 227 167 3 265 488 93 317 2.81e-12 68.6
MS.gene57130.t1 AT3G07360 24.229 227 167 3 265 488 93 317 2.81e-12 68.6
MS.gene57130.t1 AT3G07360 24.229 227 167 3 265 488 93 317 2.81e-12 68.6
MS.gene57130.t1 AT3G07360 24.229 227 167 3 265 488 93 317 2.81e-12 68.6
MS.gene57130.t1 AT1G60190 28.571 231 153 7 229 448 393 622 2.69e-11 66.6

Find 126 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTATTAAGGTTGTGAAATT+TGG 0.116884 6.2:+4053318 None:intergenic
TTGTTAATGTTGGGTAATTT+AGG 0.144924 6.2:-4052343 MS.gene57130:CDS
CTTGAGGTGGGTTTAGGTTT+TGG 0.149477 6.2:+4053475 None:intergenic
GAATTTCTATGCCCCATTTC+TGG 0.177070 6.2:-4053453 MS.gene57130:CDS
TTTCAGTTGTGGTTAGATTT+TGG 0.190072 6.2:+4053220 None:intergenic
GTTACTATTTCTTCTTCTTC+TGG 0.210667 6.2:+4052895 None:intergenic
GGTGGTGCCATCAGCAAGTT+GGG 0.245498 6.2:+4053341 None:intergenic
TGTTAATGTTGGGTAATTTA+GGG 0.261769 6.2:-4052342 MS.gene57130:CDS
TCATGGCGGGTTGAGGTTTA+AGG 0.264879 6.2:-4052188 MS.gene57130:CDS
GTATTAAGGTTGTGAAATTT+GGG 0.271357 6.2:+4053319 None:intergenic
GAAATTCTTGAGGTGGGTTT+AGG 0.305304 6.2:+4053469 None:intergenic
TCTTCTTCTGGTGTTGTTGA+AGG 0.309732 6.2:+4052907 None:intergenic
TGTCGTTTCTGTTTGATACT+AGG 0.312491 6.2:+4053094 None:intergenic
GGTCAATGCACTTGCTTCAT+TGG 0.314231 6.2:-4052716 MS.gene57130:CDS
CTTCTACTATAACCAATTCA+TGG 0.333290 6.2:+4052860 None:intergenic
TGAAAAGGTGAGGAGGATAT+TGG 0.347944 6.2:-4052095 MS.gene57130:CDS
TGTCTTTAGTGAGGAGTAAT+CGG 0.350050 6.2:-4052441 MS.gene57130:CDS
TGAAGAGGAGGAAGTGGATT+GGG 0.352883 6.2:-4052050 MS.gene57130:CDS
GAGTTCAACTTTGCACCAAT+AGG 0.356098 6.2:-4052789 MS.gene57130:CDS
TGCAGGTGTTGTGGAGTGTT+TGG 0.360271 6.2:-4052287 MS.gene57130:CDS
AGAGGTTGAAGAGGAGGAAG+TGG 0.367286 6.2:-4052056 MS.gene57130:CDS
GTGGGTTTATTGTGTGGGAC+CGG 0.368294 6.2:-4052265 MS.gene57130:CDS
TGGTGCCATCAGCAAGTTGG+GGG 0.378655 6.2:+4053343 None:intergenic
CTTGGTGTTAACATTGATAT+TGG 0.379077 6.2:+4053054 None:intergenic
TTCGGAATTTGGTTTGTGTT+TGG 0.387403 6.2:+4053259 None:intergenic
TTGAAGAGGAGGAAGTGGAT+TGG 0.398566 6.2:-4052051 MS.gene57130:CDS
GAGGATTTGAGGTTAAGATT+TGG 0.399690 6.2:+4053297 None:intergenic
TGGGAGGAGTTGCTTGACTC+AGG 0.400997 6.2:-4052031 MS.gene57130:CDS
ATGTTGGGTAATTTAGGGTT+TGG 0.406947 6.2:-4052337 MS.gene57130:CDS
GGGTGGTGCCATCAGCAAGT+TGG 0.410050 6.2:+4053340 None:intergenic
GTGGTGCCATCAGCAAGTTG+GGG 0.416360 6.2:+4053342 None:intergenic
GACGCGCCATGACTCGGGTT+TGG 0.418859 6.2:-4052476 MS.gene57130:CDS
TACAGGCTTGGACTGAGGTT+CGG 0.422905 6.2:+4053382 None:intergenic
TTTGTTGGGGATGGTTAAGT+CGG 0.428089 6.2:-4052386 MS.gene57130:CDS
AGACATGAGAGAACCAGAAA+TGG 0.431518 6.2:+4053440 None:intergenic
AACCCCAACACAACTCTCTC+TGG 0.431543 6.2:+4052225 None:intergenic
TCAAATCCTCCATTCTCAAA+TGG 0.433697 6.2:-4053284 MS.gene57130:CDS
TGGCCAGAGGAGACAATTAC+AGG 0.434252 6.2:+4053414 None:intergenic
AGGGTTTGGATCGGATGGTC+GGG 0.435245 6.2:-4052323 MS.gene57130:CDS
AAAACTCAGAAACCATGAAT+TGG 0.438643 6.2:-4052872 MS.gene57130:CDS
GAGGTTAAGATTTGGTATTA+AGG 0.439265 6.2:+4053305 None:intergenic
GGTTAAGCTAGGGTTTGTTT+CGG 0.441141 6.2:-4052410 MS.gene57130:CDS
TTCGTGTGCGATGTTTAGTT+TGG 0.443972 6.2:-4052584 MS.gene57130:CDS
ATTTGAGAATGGAGGATTTG+AGG 0.446332 6.2:+4053286 None:intergenic
GACATGAGAGAACCAGAAAT+GGG 0.446822 6.2:+4053441 None:intergenic
CATTGAGTCATGGCGGGTTG+AGG 0.451605 6.2:-4052195 MS.gene57130:CDS
TGGGTTTATTGTGTGGGACC+GGG 0.456648 6.2:-4052264 MS.gene57130:CDS
CGACCAGAGAGAGTTGTGTT+GGG 0.460168 6.2:-4052228 MS.gene57130:CDS
GGACGGGTCAAGTGTTAAAT+CGG 0.463411 6.2:-4051969 MS.gene57130:CDS
CGGGTTGAGGTTTAAGGCGG+TGG 0.465510 6.2:-4052182 MS.gene57130:CDS
AGTTCAACTTTGCACCAATA+GGG 0.470052 6.2:-4052788 MS.gene57130:CDS
GTCTTTAGTGAGGAGTAATC+GGG 0.470251 6.2:-4052440 MS.gene57130:CDS
CAAAGAACATAGTACCCTAT+TGG 0.475960 6.2:+4052774 None:intergenic
GTTTGGTGGGTTTATTGTGT+GGG 0.480788 6.2:-4052270 MS.gene57130:CDS
TAGGGTTTGGATCGGATGGT+CGG 0.485284 6.2:-4052324 MS.gene57130:CDS
AGGTGTTGTGGAGTGTTTGG+TGG 0.485836 6.2:-4052284 MS.gene57130:CDS
TGTGGAAATGTTGCAAAAGA+TGG 0.488035 6.2:-4052143 MS.gene57130:CDS
GGATGGTCGGGCTGCTATGT+TGG 0.488457 6.2:-4052311 MS.gene57130:CDS
GAGGTTTAAGGCGGTGGCGA+AGG 0.489134 6.2:-4052176 MS.gene57130:CDS
TTTATTGTGTGGGACCGGGT+TGG 0.490256 6.2:-4052260 MS.gene57130:CDS
TCAACAAAGTGAAGATAGTT+CGG 0.491459 6.2:-4052672 MS.gene57130:CDS
GAGGAGTAATCGGGCTAAGA+TGG 0.497030 6.2:-4052431 MS.gene57130:CDS
GGCATAGAAATTCTTGAGGT+GGG 0.497777 6.2:+4053463 None:intergenic
GGTGTTGTGGAGTGTTTGGT+GGG 0.498382 6.2:-4052283 MS.gene57130:CDS
GATCCTGTAATTGTCTCCTC+TGG 0.498650 6.2:-4053417 MS.gene57130:CDS
GATTTAAGCGCGTGAAGTAA+AGG 0.502148 6.2:+4052511 None:intergenic
GGCGAAGGAGGTTGGAGTTG+TGG 0.503945 6.2:-4052161 MS.gene57130:CDS
TGTTTGGATCCATTTGAGAA+TGG 0.506237 6.2:+4053275 None:intergenic
GGGAGGAGTTGCTTGACTCA+GGG 0.506660 6.2:-4052030 MS.gene57130:CDS
CGGGCTAAGATGGTTAAGCT+AGG 0.507277 6.2:-4052421 MS.gene57130:CDS
CAACTACTCCAAAGATGAAG+TGG 0.507317 6.2:-4053536 None:intergenic
AGAGGAGGAAGTGGATTGGG+AGG 0.512309 6.2:-4052047 MS.gene57130:CDS
GGTTAAGTCGGGTCATATGA+TGG 0.515701 6.2:-4052374 MS.gene57130:CDS
TGTTTGGTGGGTTTATTGTG+TGG 0.516239 6.2:-4052271 MS.gene57130:CDS
GAATTGGTTATAGTAGAAGA+AGG 0.516593 6.2:-4052856 MS.gene57130:CDS
TGAAAAGACGCGCCATGACT+CGG 0.520929 6.2:-4052482 MS.gene57130:CDS
TTTGTCATTTGTCTTTAGTG+AGG 0.521733 6.2:-4052450 MS.gene57130:CDS
TGTTGACTTTCTCAAGTGAA+AGG 0.524318 6.2:+4052689 None:intergenic
CGGGCTGCTATGTTGGATGC+AGG 0.531655 6.2:-4052304 MS.gene57130:CDS
TTGGACTGAGGTTCGGTCAA+AGG 0.531932 6.2:+4053389 None:intergenic
AAGGCGGTGGCGAAGGAGGT+TGG 0.532422 6.2:-4052169 MS.gene57130:CDS
GAGCGAGAAGGCTAATGAAA+AGG 0.536039 6.2:-4052110 MS.gene57130:CDS
TCGACCAGAGAGAGTTGTGT+TGG 0.536889 6.2:-4052229 MS.gene57130:CDS
TTGTTGGGGATGGTTAAGTC+GGG 0.538225 6.2:-4052385 MS.gene57130:CDS
GGGTAATTTAGGGTTTGGAT+CGG 0.538407 6.2:-4052332 MS.gene57130:CDS
GAAAAGACGCGCCATGACTC+GGG 0.545042 6.2:-4052481 MS.gene57130:CDS
AATTTAGGGTTTGGATCGGA+TGG 0.549330 6.2:-4052328 MS.gene57130:CDS
AAAGTGAAGATAGTTCGGTC+AGG 0.554562 6.2:-4052667 MS.gene57130:CDS
CGACTCAACAGTGGATTGGA+CGG 0.561522 6.2:-4051986 MS.gene57130:CDS
CTGAGGTTCGGTCAAAGGAA+TGG 0.562041 6.2:+4053394 None:intergenic
GTTTGGATTGTGTGAATCGC+AGG 0.562133 6.2:-4052614 MS.gene57130:CDS
GGGCATAGAAATTCTTGAGG+TGG 0.565330 6.2:+4053462 None:intergenic
GATGATAATAAAACTGCGAT+TGG 0.572462 6.2:-4052553 MS.gene57130:CDS
AAAGGTGAGGAGGATATTGG+AGG 0.573257 6.2:-4052092 MS.gene57130:CDS
TTGCTTGACTCAGGGTTCAG+TGG 0.573852 6.2:-4052022 MS.gene57130:CDS
GTTTAAGGCGGTGGCGAAGG+AGG 0.574627 6.2:-4052173 MS.gene57130:CDS
GAGTCGACTCAACAGTGGAT+TGG 0.576595 6.2:-4051990 MS.gene57130:CDS
TTCCTCTGAGCTTGAGTACG+AGG 0.578202 6.2:+4053026 None:intergenic
GACCAGAGAGAGTTGTGTTG+GGG 0.581160 6.2:-4052227 MS.gene57130:CDS
AGGCTAATGAAAAGGTGAGG+AGG 0.581449 6.2:-4052102 MS.gene57130:CDS
GGGCTAAGATGGTTAAGCTA+GGG 0.583294 6.2:-4052420 MS.gene57130:CDS
AACCTCAAAACTTCGATCAA+CGG 0.584438 6.2:+4052634 None:intergenic
TTGGATCCATTTGAGAATGG+AGG 0.585432 6.2:+4053278 None:intergenic
TATTAAGGTTGTGAAATTTG+GGG 0.588590 6.2:+4053320 None:intergenic
TAACAGAAACTTTGAAGCTG+TGG 0.590142 6.2:+4052958 None:intergenic
AAAGAGCCAAACCCGAGTCA+TGG 0.590714 6.2:+4052470 None:intergenic
GGTTCAAGTTCAGATGAAGA+AGG 0.600403 6.2:+4052928 None:intergenic
GACTCAACAGTGGATTGGAC+GGG 0.601220 6.2:-4051985 MS.gene57130:CDS
TGTATGCATTGAGTCATGGC+GGG 0.611163 6.2:-4052201 MS.gene57130:CDS
AAGACATAAGTTTGAGTACG+AGG 0.624042 6.2:+4053196 None:intergenic
AAGACATTAGTTTGAGTACG+AGG 0.628359 6.2:+4053145 None:intergenic
TAAGGTTGTGAAATTTGGGG+TGG 0.633892 6.2:+4053323 None:intergenic
CAGAAACTTTGAAGCTGTGG+TGG 0.634080 6.2:+4052961 None:intergenic
TTGTATGCATTGAGTCATGG+CGG 0.636106 6.2:-4052202 MS.gene57130:CDS
CTCAAAACTTCGATCAACGG+TGG 0.646331 6.2:+4052637 None:intergenic
GGAGAAAATGAAGAGCGAGA+AGG 0.651983 6.2:-4052122 MS.gene57130:CDS
GGTCGACTCAGACTCCAACC+CGG 0.654131 6.2:+4052246 None:intergenic
TATGTTGGATGCAGGTGTTG+TGG 0.654172 6.2:-4052296 MS.gene57130:CDS
GGTGCCATCAGCAAGTTGGG+GGG 0.659317 6.2:+4053344 None:intergenic
ATGGGGCATAGAAATTCTTG+AGG 0.675781 6.2:+4053459 None:intergenic
TGGCGGGTTGAGGTTTAAGG+CGG 0.677131 6.2:-4052185 MS.gene57130:CDS
AGAAGGCTAATGAAAAGGTG+AGG 0.679571 6.2:-4052105 MS.gene57130:CDS
ACTATGAGTCGACTCAACAG+TGG 0.687997 6.2:-4051995 MS.gene57130:CDS
TCGGTCAAAGGAATGGCCAG+AGG 0.694100 6.2:+4053401 None:intergenic
ACATGAGAGAACCAGAAATG+GGG 0.695758 6.2:+4053442 None:intergenic
AACCTCGTACTCAAGCTCAG+AGG 0.703022 6.2:-4053028 MS.gene57130:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAAAATCACAAGAACGAATT+TGG - chr6.2:4052662-4052681 MS.gene57130:CDS 25.0%
! GTATTAAGGTTGTGAAATTT+GGG + chr6.2:4052164-4052183 None:intergenic 25.0%
! TATTAAGGTTGTGAAATTTG+GGG + chr6.2:4052163-4052182 None:intergenic 25.0%
! TGTTAATGTTGGGTAATTTA+GGG - chr6.2:4053138-4053157 MS.gene57130:CDS 25.0%
! TTGTTAATGTTGGGTAATTT+AGG - chr6.2:4053137-4053156 MS.gene57130:CDS 25.0%
! TTTGATTGTGTCTAAAAATG+AGG - chr6.2:4052734-4052753 MS.gene57130:CDS 25.0%
!!! GATCAAGTTTTGTTAATGTT+GGG - chr6.2:4053128-4053147 MS.gene57130:CDS 25.0%
AAAACTCAGAAACCATGAAT+TGG - chr6.2:4052608-4052627 MS.gene57130:CDS 30.0%
CTTCTACTATAACCAATTCA+TGG + chr6.2:4052623-4052642 None:intergenic 30.0%
GAATTGGTTATAGTAGAAGA+AGG - chr6.2:4052624-4052643 MS.gene57130:CDS 30.0%
GATGATAATAAAACTGCGAT+TGG - chr6.2:4052927-4052946 MS.gene57130:CDS 30.0%
GGTATTAAGGTTGTGAAATT+TGG + chr6.2:4052165-4052184 None:intergenic 30.0%
TCAACAAAGTGAAGATAGTT+CGG - chr6.2:4052808-4052827 MS.gene57130:CDS 30.0%
! GAGGTTAAGATTTGGTATTA+AGG + chr6.2:4052178-4052197 None:intergenic 30.0%
! GGTATAGTTGAGATTTTTAC+AGG + chr6.2:4052118-4052137 None:intergenic 30.0%
! GTTACTATTTCTTCTTCTTC+TGG + chr6.2:4052588-4052607 None:intergenic 30.0%
! TTTCAGTTGTGGTTAGATTT+TGG + chr6.2:4052263-4052282 None:intergenic 30.0%
! TTTGTCATTTGTCTTTAGTG+AGG - chr6.2:4053030-4053049 MS.gene57130:CDS 30.0%
!! CTTGGTGTTAACATTGATAT+TGG + chr6.2:4052429-4052448 None:intergenic 30.0%
!!! ATTTTGGTTGGTTTGGATTT+TGG + chr6.2:4052247-4052266 None:intergenic 30.0%
!!! GGATCAAGTTTTGTTAATGT+TGG - chr6.2:4053127-4053146 MS.gene57130:CDS 30.0%
AACCTCAAAACTTCGATCAA+CGG + chr6.2:4052849-4052868 None:intergenic 35.0%
AAGACATAAGTTTGAGTACG+AGG + chr6.2:4052287-4052306 None:intergenic 35.0%
AGTTCAACTTTGCACCAATA+GGG - chr6.2:4052692-4052711 MS.gene57130:CDS 35.0%
ATTTGAGAATGGAGGATTTG+AGG + chr6.2:4052197-4052216 None:intergenic 35.0%
CAAAGAACATAGTACCCTAT+TGG + chr6.2:4052709-4052728 None:intergenic 35.0%
GATTGTGTCTAAAAATGAGG+TGG - chr6.2:4052737-4052756 MS.gene57130:CDS 35.0%
GTCTAAAAATGAGGTGGTAA+AGG - chr6.2:4052743-4052762 MS.gene57130:CDS 35.0%
TCAAATCCTCCATTCTCAAA+TGG - chr6.2:4052196-4052215 MS.gene57130:CDS 35.0%
TGTCTTTAGTGAGGAGTAAT+CGG - chr6.2:4053039-4053058 MS.gene57130:CDS 35.0%
TGTGGAAATGTTGCAAAAGA+TGG - chr6.2:4053337-4053356 MS.gene57130:CDS 35.0%
TGTTTGGATCCATTTGAGAA+TGG + chr6.2:4052208-4052227 None:intergenic 35.0%
! AAGACATTAGTTTGAGTACG+AGG + chr6.2:4052338-4052357 None:intergenic 35.0%
! AGTTGAGATTTTTACAGGCT+TGG + chr6.2:4052113-4052132 None:intergenic 35.0%
! ATGTTGGGTAATTTAGGGTT+TGG - chr6.2:4053143-4053162 MS.gene57130:CDS 35.0%
! GAGGATTTGAGGTTAAGATT+TGG + chr6.2:4052186-4052205 None:intergenic 35.0%
! GTTTTGTATGCATTGAGTCA+TGG - chr6.2:4053275-4053294 MS.gene57130:CDS 35.0%
! TGTCGTTTCTGTTTGATACT+AGG + chr6.2:4052389-4052408 None:intergenic 35.0%
!! AAAACTGCGATTGGTGTTTT+AGG - chr6.2:4052936-4052955 MS.gene57130:CDS 35.0%
!! AGTTGTGGTTAGATTTTGGT+TGG + chr6.2:4052259-4052278 None:intergenic 35.0%
!! TAACAGAAACTTTGAAGCTG+TGG + chr6.2:4052525-4052544 None:intergenic 35.0%
!! TGTTGACTTTCTCAAGTGAA+AGG + chr6.2:4052794-4052813 None:intergenic 35.0%
!! TTCGGAATTTGGTTTGTGTT+TGG + chr6.2:4052224-4052243 None:intergenic 35.0%
!!! TGGTTAGATTTTGGTTGGTT+TGG + chr6.2:4052254-4052273 None:intergenic 35.0%
!!! TTGATCGAAGTTTTGAGGTT+TGG - chr6.2:4052849-4052868 MS.gene57130:CDS 35.0%
!!! TTGGATTTTGGTTCGGAATT+TGG + chr6.2:4052235-4052254 None:intergenic 35.0%
AAAGTGAAGATAGTTCGGTC+AGG - chr6.2:4052813-4052832 MS.gene57130:CDS 40.0%
ACATGAGAGAACCAGAAATG+GGG + chr6.2:4052041-4052060 None:intergenic 40.0%
AGAAAAAGAGGTTGAAGAGG+AGG - chr6.2:4053418-4053437 MS.gene57130:CDS 40.0%
AGAAGGCTAATGAAAAGGTG+AGG - chr6.2:4053375-4053394 MS.gene57130:CDS 40.0%
AGACATGAGAGAACCAGAAA+TGG + chr6.2:4052043-4052062 None:intergenic 40.0%
ATGGGGCATAGAAATTCTTG+AGG + chr6.2:4052024-4052043 None:intergenic 40.0%
GAATTTCTATGCCCCATTTC+TGG - chr6.2:4052027-4052046 MS.gene57130:CDS 40.0%
GACATGAGAGAACCAGAAAT+GGG + chr6.2:4052042-4052061 None:intergenic 40.0%
GAGTTCAACTTTGCACCAAT+AGG - chr6.2:4052691-4052710 MS.gene57130:CDS 40.0%
GATTTAAGCGCGTGAAGTAA+AGG + chr6.2:4052972-4052991 None:intergenic 40.0%
GGCATAGAAATTCTTGAGGT+GGG + chr6.2:4052020-4052039 None:intergenic 40.0%
GTCTTTAGTGAGGAGTAATC+GGG - chr6.2:4053040-4053059 MS.gene57130:CDS 40.0%
TAAGGTTGTGAAATTTGGGG+TGG + chr6.2:4052160-4052179 None:intergenic 40.0%
TGAAAAGGTGAGGAGGATAT+TGG - chr6.2:4053385-4053404 MS.gene57130:CDS 40.0%
TTCGTGTGCGATGTTTAGTT+TGG - chr6.2:4052896-4052915 MS.gene57130:CDS 40.0%
TTGGATCCATTTGAGAATGG+AGG + chr6.2:4052205-4052224 None:intergenic 40.0%
TTGTATGCATTGAGTCATGG+CGG - chr6.2:4053278-4053297 MS.gene57130:CDS 40.0%
TTTGTTGGGGATGGTTAAGT+CGG - chr6.2:4053094-4053113 MS.gene57130:CDS 40.0%
! AATTTAGGGTTTGGATCGGA+TGG - chr6.2:4053152-4053171 MS.gene57130:CDS 40.0%
! ATTTTTACAGGCTTGGACTG+AGG + chr6.2:4052106-4052125 None:intergenic 40.0%
! CTTGAGTACGAGGTTTTTCT+TGG + chr6.2:4052447-4052466 None:intergenic 40.0%
! GAAATTCTTGAGGTGGGTTT+AGG + chr6.2:4052014-4052033 None:intergenic 40.0%
! GGGTAATTTAGGGTTTGGAT+CGG - chr6.2:4053148-4053167 MS.gene57130:CDS 40.0%
! GGTTAAGCTAGGGTTTGTTT+CGG - chr6.2:4053070-4053089 MS.gene57130:CDS 40.0%
! GGTTCAAGTTCAGATGAAGA+AGG + chr6.2:4052555-4052574 None:intergenic 40.0%
!! AGGGTTTGTTTCGGTTTTGT+TGG - chr6.2:4053079-4053098 MS.gene57130:CDS 40.0%
!! GTTTGGTGGGTTTATTGTGT+GGG - chr6.2:4053210-4053229 MS.gene57130:CDS 40.0%
!! TCTTCTTCTGGTGTTGTTGA+AGG + chr6.2:4052576-4052595 None:intergenic 40.0%
!! TGTTTGGTGGGTTTATTGTG+TGG - chr6.2:4053209-4053228 MS.gene57130:CDS 40.0%
!! TTGAGGTGGGTTTAGGTTTT+GGG + chr6.2:4052007-4052026 None:intergenic 40.0%
!!! GGGTTTGTTTCGGTTTTGTT+GGG - chr6.2:4053080-4053099 MS.gene57130:CDS 40.0%
!!! GGTTGGTTTGGATTTTGGTT+CGG + chr6.2:4052242-4052261 None:intergenic 40.0%
!!! GGTTTGTTTCGGTTTTGTTG+GGG - chr6.2:4053081-4053100 MS.gene57130:CDS 40.0%
AAAGGTGAGGAGGATATTGG+AGG - chr6.2:4053388-4053407 MS.gene57130:CDS 45.0%
AGGCTAATGAAAAGGTGAGG+AGG - chr6.2:4053378-4053397 MS.gene57130:CDS 45.0%
CTCAAAACTTCGATCAACGG+TGG + chr6.2:4052846-4052865 None:intergenic 45.0%
GAGCGAGAAGGCTAATGAAA+AGG - chr6.2:4053370-4053389 MS.gene57130:CDS 45.0%
GATCCTGTAATTGTCTCCTC+TGG - chr6.2:4052063-4052082 MS.gene57130:CDS 45.0%
GCGAGAAAAAGAGGTTGAAG+AGG - chr6.2:4053415-4053434 MS.gene57130:CDS 45.0%
GGACGGGTCAAGTGTTAAAT+CGG - chr6.2:4053511-4053530 MS.gene57130:CDS 45.0%
GGAGAAAATGAAGAGCGAGA+AGG - chr6.2:4053358-4053377 MS.gene57130:CDS 45.0%
GGGCATAGAAATTCTTGAGG+TGG + chr6.2:4052021-4052040 None:intergenic 45.0%
GGGCTAAGATGGTTAAGCTA+GGG - chr6.2:4053060-4053079 MS.gene57130:CDS 45.0%
GGTCAATGCACTTGCTTCAT+TGG - chr6.2:4052764-4052783 MS.gene57130:CDS 45.0%
GGTTAAGTCGGGTCATATGA+TGG - chr6.2:4053106-4053125 MS.gene57130:CDS 45.0%
GTTTGGATTGTGTGAATCGC+AGG - chr6.2:4052866-4052885 MS.gene57130:CDS 45.0%
TGTATGCATTGAGTCATGGC+GGG - chr6.2:4053279-4053298 MS.gene57130:CDS 45.0%
TTGAAGAGGAGGAAGTGGAT+TGG - chr6.2:4053429-4053448 MS.gene57130:CDS 45.0%
TTGTTGGGGATGGTTAAGTC+GGG - chr6.2:4053095-4053114 MS.gene57130:CDS 45.0%
! ACTATGAGTCGACTCAACAG+TGG - chr6.2:4053485-4053504 MS.gene57130:CDS 45.0%
! CACCGTTGATCGAAGTTTTG+AGG - chr6.2:4052844-4052863 MS.gene57130:CDS 45.0%
! GAGTACGAGGTTTTCAGTTG+TGG + chr6.2:4052274-4052293 None:intergenic 45.0%
! TATGTTGGATGCAGGTGTTG+TGG - chr6.2:4053184-4053203 MS.gene57130:CDS 45.0%
! TGAAGAGGAGGAAGTGGATT+GGG - chr6.2:4053430-4053449 MS.gene57130:CDS 45.0%
!! CAGAAACTTTGAAGCTGTGG+TGG + chr6.2:4052522-4052541 None:intergenic 45.0%
!! CTTGAGGTGGGTTTAGGTTT+TGG + chr6.2:4052008-4052027 None:intergenic 45.0%
!!! TGTTTCGGTTTTGTTGGGGA+TGG - chr6.2:4053085-4053104 MS.gene57130:CDS 45.0%
AAAGAGCCAAACCCGAGTCA+TGG + chr6.2:4053013-4053032 None:intergenic 50.0%
AACCCCAACACAACTCTCTC+TGG + chr6.2:4053258-4053277 None:intergenic 50.0%
AACCTCGTACTCAAGCTCAG+AGG - chr6.2:4052452-4052471 MS.gene57130:CDS 50.0%
AGAGGTTGAAGAGGAGGAAG+TGG - chr6.2:4053424-4053443 MS.gene57130:CDS 50.0%
CGACCAGAGAGAGTTGTGTT+GGG - chr6.2:4053252-4053271 MS.gene57130:CDS 50.0%
CGGGCTAAGATGGTTAAGCT+AGG - chr6.2:4053059-4053078 MS.gene57130:CDS 50.0%
GACCAGAGAGAGTTGTGTTG+GGG - chr6.2:4053253-4053272 MS.gene57130:CDS 50.0%
GAGGAGTAATCGGGCTAAGA+TGG - chr6.2:4053049-4053068 MS.gene57130:CDS 50.0%
GGAGGTGATGCGAGAAAAAG+AGG - chr6.2:4053406-4053425 MS.gene57130:CDS 50.0%
GTGGGTTTATTGTGTGGGAC+CGG - chr6.2:4053215-4053234 MS.gene57130:CDS 50.0%
TACAGGCTTGGACTGAGGTT+CGG + chr6.2:4052101-4052120 None:intergenic 50.0%
TAGGGTTTGGATCGGATGGT+CGG - chr6.2:4053156-4053175 MS.gene57130:CDS 50.0%
TCGACCAGAGAGAGTTGTGT+TGG - chr6.2:4053251-4053270 MS.gene57130:CDS 50.0%
TGAAAAGACGCGCCATGACT+CGG - chr6.2:4052998-4053017 MS.gene57130:CDS 50.0%
TGGCCAGAGGAGACAATTAC+AGG + chr6.2:4052069-4052088 None:intergenic 50.0%
TGGGTTTATTGTGTGGGACC+GGG - chr6.2:4053216-4053235 MS.gene57130:CDS 50.0%
TTCCTCTGAGCTTGAGTACG+AGG + chr6.2:4052457-4052476 None:intergenic 50.0%
TTGCTTGACTCAGGGTTCAG+TGG - chr6.2:4053458-4053477 MS.gene57130:CDS 50.0%
TTTATTGTGTGGGACCGGGT+TGG - chr6.2:4053220-4053239 MS.gene57130:CDS 50.0%
! AGGTGTTGTGGAGTGTTTGG+TGG - chr6.2:4053196-4053215 MS.gene57130:CDS 50.0%
! CTGAGGTTCGGTCAAAGGAA+TGG + chr6.2:4052089-4052108 None:intergenic 50.0%
! GAGTCGACTCAACAGTGGAT+TGG - chr6.2:4053490-4053509 MS.gene57130:CDS 50.0%
! GGTGTTGTGGAGTGTTTGGT+GGG - chr6.2:4053197-4053216 MS.gene57130:CDS 50.0%
! TGCAGGTGTTGTGGAGTGTT+TGG - chr6.2:4053193-4053212 MS.gene57130:CDS 50.0%
! TTGGACTGAGGTTCGGTCAA+AGG + chr6.2:4052094-4052113 None:intergenic 50.0%
!! CGACTCAACAGTGGATTGGA+CGG - chr6.2:4053494-4053513 MS.gene57130:CDS 50.0%
!! GACTCAACAGTGGATTGGAC+GGG - chr6.2:4053495-4053514 MS.gene57130:CDS 50.0%
!! TATACCCCCCAACTTGCTGA+TGG - chr6.2:4052132-4052151 MS.gene57130:CDS 50.0%
!! TCATGGCGGGTTGAGGTTTA+AGG - chr6.2:4053292-4053311 MS.gene57130:CDS 50.0%
AGGGTTTGGATCGGATGGTC+GGG - chr6.2:4053157-4053176 MS.gene57130:CDS 55.0%
GAAAAGACGCGCCATGACTC+GGG - chr6.2:4052999-4053018 MS.gene57130:CDS 55.0%
GGGAGGAGTTGCTTGACTCA+GGG - chr6.2:4053450-4053469 MS.gene57130:CDS 55.0%
TCGGTCAAAGGAATGGCCAG+AGG + chr6.2:4052082-4052101 None:intergenic 55.0%
TGGGAGGAGTTGCTTGACTC+AGG - chr6.2:4053449-4053468 MS.gene57130:CDS 55.0%
!! AGAGGAGGAAGTGGATTGGG+AGG - chr6.2:4053433-4053452 MS.gene57130:CDS 55.0%
!! CATTGAGTCATGGCGGGTTG+AGG - chr6.2:4053285-4053304 MS.gene57130:CDS 55.0%
!! GGTGGTGCCATCAGCAAGTT+GGG + chr6.2:4052142-4052161 None:intergenic 55.0%
!! GTGGTGCCATCAGCAAGTTG+GGG + chr6.2:4052141-4052160 None:intergenic 55.0%
!! TGGCGGGTTGAGGTTTAAGG+CGG - chr6.2:4053295-4053314 MS.gene57130:CDS 55.0%
!! TGGTGCCATCAGCAAGTTGG+GGG + chr6.2:4052140-4052159 None:intergenic 55.0%
CGGGCTGCTATGTTGGATGC+AGG - chr6.2:4053176-4053195 MS.gene57130:CDS 60.0%
GGATGGTCGGGCTGCTATGT+TGG - chr6.2:4053169-4053188 MS.gene57130:CDS 60.0%
GGCGAAGGAGGTTGGAGTTG+TGG - chr6.2:4053319-4053338 MS.gene57130:CDS 60.0%
! CGGGTTGAGGTTTAAGGCGG+TGG - chr6.2:4053298-4053317 MS.gene57130:CDS 60.0%
! GAGGTTTAAGGCGGTGGCGA+AGG - chr6.2:4053304-4053323 MS.gene57130:CDS 60.0%
! GGTCGACTCAGACTCCAACC+CGG + chr6.2:4053237-4053256 None:intergenic 60.0%
! GGTGCCATCAGCAAGTTGGG+GGG + chr6.2:4052139-4052158 None:intergenic 60.0%
! GTTTAAGGCGGTGGCGAAGG+AGG - chr6.2:4053307-4053326 MS.gene57130:CDS 60.0%
!! GGGTGGTGCCATCAGCAAGT+TGG + chr6.2:4052143-4052162 None:intergenic 60.0%
AAGGCGGTGGCGAAGGAGGT+TGG - chr6.2:4053311-4053330 MS.gene57130:CDS 65.0%
! GACGCGCCATGACTCGGGTT+TGG - chr6.2:4053004-4053023 MS.gene57130:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 4051958 4053544 4051958 ID=MS.gene57130
chr6.2 mRNA 4051958 4053544 4051958 ID=MS.gene57130.t1;Parent=MS.gene57130
chr6.2 exon 4051958 4053544 4051958 ID=MS.gene57130.t1.exon1;Parent=MS.gene57130.t1
chr6.2 CDS 4051958 4053544 4051958 ID=cds.MS.gene57130.t1;Parent=MS.gene57130.t1
Gene Sequence

>MS.gene57130

ATGAAGTGGAAGAAAATGATGATTTTCTTCAACACAACAAAAACTACCCAAAACCTAAACCCACCTCAAGAATTTCTATGCCCCATTTCTGGTTCTCTCATGTCTGATCCTGTAATTGTCTCCTCTGGCCATTCCTTTGACCGAACCTCAGTCCAAGCCTGTAAAAATCTCAACTATACCCCCCAACTTGCTGATGGCACCACCCCAAATTTCACAACCTTAATACCAAATCTTAACCTCAAATCCTCCATTCTCAAATGGATCCAAACACAAACCAAATTCCGAACCAAAATCCAAACCAACCAAAATCTAACCACAACTGAAAACCTCGTACTCAAACTTATGTCTTCAAAACAACATGAACAGAATCAAAACAACCTCGTACTCAAACTAATGTCTTCAAAACAACATCAACATAATCAAAACAACCTAGTATCAAACAGAAACGACAAAGAAGAAGAAACACGACCAATATCAATGTTAACACCAAGAAAAACCTCGTACTCAAGCTCAGAGGAATCTATAGCTACTGTCACGTCATCATCATCAACAAGAACAACACCACCACAGCTTCAAAGTTTCTGTTACTCTTCACCTTCTTCATCTGAACTTGAACCTTCAACAACACCAGAAGAAGAAGAAATAGTAACAAAACTCAGAAACCATGAATTGGTTATAGTAGAAGAAGGTTTAATCTCACTCAGAAAAATCACAAGAACGAATTTGGAAAGTAGAGTTCAACTTTGCACCAATAGGGTACTATGTTCTTTGCGTTATTTGATTGTGTCTAAAAATGAGGTGGTAAAGGTCAATGCACTTGCTTCATTGGTCAACCTTTCACTTGAGAAAGTCAACAAAGTGAAGATAGTTCGGTCAGGAATTGTTCCACCGTTGATCGAAGTTTTGAGGTTTGGATTGTGTGAATCGCAGGAACATGCTTCGTGTGCGATGTTTAGTTTGGCGCTTGATGATGATAATAAAACTGCGATTGGTGTTTTAGGTGCTCTTTTGCCTTTACTTCACGCGCTTAAATCAGAGAGTGAAAAGACGCGCCATGACTCGGGTTTGGCTCTTTGTCATTTGTCTTTAGTGAGGAGTAATCGGGCTAAGATGGTTAAGCTAGGGTTTGTTTCGGTTTTGTTGGGGATGGTTAAGTCGGGTCATATGATGGATCAAGTTTTGTTAATGTTGGGTAATTTAGGGTTTGGATCGGATGGTCGGGCTGCTATGTTGGATGCAGGTGTTGTGGAGTGTTTGGTGGGTTTATTGTGTGGGACCGGGTTGGAGTCTGAGTCGACCAGAGAGAGTTGTGTTGGGGTTTTGTATGCATTGAGTCATGGCGGGTTGAGGTTTAAGGCGGTGGCGAAGGAGGTTGGAGTTGTGGAAATGTTGCAAAAGATGGAGAAAATGAAGAGCGAGAAGGCTAATGAAAAGGTGAGGAGGATATTGGAGGTGATGCGAGAAAAAGAGGTTGAAGAGGAGGAAGTGGATTGGGAGGAGTTGCTTGACTCAGGGTTCAGTGGTCGAACTATGAGTCGACTCAACAGTGGATTGGACGGGTCAAGTGTTAAATCGGATGAGCTGTGA
Protein sequence

>MS.gene57130.t1

MKWKKMMIFFNTTKTTQNLNPPQEFLCPISGSLMSDPVIVSSGHSFDRTSVQACKNLNYTPQLADGTTPNFTTLIPNLNLKSSILKWIQTQTKFRTKIQTNQNLTTTENLVLKLMSSKQHEQNQNNLVLKLMSSKQHQHNQNNLVSNRNDKEEETRPISMLTPRKTSYSSSEESIATVTSSSSTRTTPPQLQSFCYSSPSSSELEPSTTPEEEEIVTKLRNHELVIVEEGLISLRKITRTNLESRVQLCTNRVLCSLRYLIVSKNEVVKVNALASLVNLSLEKVNKVKIVRSGIVPPLIEVLRFGLCESQEHASCAMFSLALDDDNKTAIGVLGALLPLLHALKSESEKTRHDSGLALCHLSLVRSNRAKMVKLGFVSVLLGMVKSGHMMDQVLLMLGNLGFGSDGRAAMLDAGVVECLVGLLCGTGLESESTRESCVGVLYALSHGGLRFKAVAKEVGVVEMLQKMEKMKSEKANEKVRRILEVMREKEVEEEEVDWEELLDSGFSGRTMSRLNSGLDGSSVKSDEL