Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58527.t1 | XP_003613515.2 | 94.1 | 494 | 27 | 2 | 1 | 492 | 1 | 494 | 7.50E-263 | 916 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58527.t1 | G7K8C1 | 94.1 | 494 | 27 | 2 | 1 | 492 | 1 | 494 | 5.4e-263 | 916.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene58527 | 0.855442 | 6.29E-62 | -1.69E-46 |
| MS.gene04998 | MS.gene58527 | 0.807855 | 4.12E-50 | -1.69E-46 |
| MS.gene050414 | MS.gene58527 | 0.823261 | 1.52E-53 | -1.69E-46 |
| MS.gene050571 | MS.gene58527 | 0.802168 | 6.37E-49 | -1.69E-46 |
| MS.gene050654 | MS.gene58527 | 0.800261 | 1.57E-48 | -1.69E-46 |
| MS.gene050945 | MS.gene58527 | 0.801513 | 8.69E-49 | -1.69E-46 |
| MS.gene053298 | MS.gene58527 | 0.819191 | 1.32E-52 | -1.69E-46 |
| MS.gene053726 | MS.gene58527 | 0.805307 | 1.42E-49 | -1.69E-46 |
| MS.gene053879 | MS.gene58527 | 0.81611 | 6.55E-52 | -1.69E-46 |
| MS.gene053931 | MS.gene58527 | 0.80177 | 7.70E-49 | -1.69E-46 |
| MS.gene054892 | MS.gene58527 | 0.854928 | 8.88E-62 | -1.69E-46 |
| MS.gene054893 | MS.gene58527 | 0.862007 | 6.87E-64 | -1.69E-46 |
| MS.gene054957 | MS.gene58527 | 0.820371 | 7.10E-53 | -1.69E-46 |
| MS.gene055150 | MS.gene58527 | 0.819567 | 1.09E-52 | -1.69E-46 |
| MS.gene057622 | MS.gene58527 | 0.935559 | 7.01E-97 | -1.69E-46 |
| MS.gene058159 | MS.gene58527 | 0.844914 | 5.63E-59 | -1.69E-46 |
| MS.gene058592 | MS.gene58527 | 0.801278 | 9.71E-49 | -1.69E-46 |
| MS.gene05878 | MS.gene58527 | 0.832943 | 7.08E-56 | -1.69E-46 |
| MS.gene059146 | MS.gene58527 | 0.814292 | 1.66E-51 | -1.69E-46 |
| MS.gene05952 | MS.gene58527 | 0.835203 | 1.92E-56 | -1.69E-46 |
| MS.gene05956 | MS.gene58527 | 0.811107 | 8.26E-51 | -1.69E-46 |
| MS.gene059901 | MS.gene58527 | -0.801643 | 8.17E-49 | -1.69E-46 |
| MS.gene06023 | MS.gene58527 | 0.806237 | 9.07E-50 | -1.69E-46 |
| MS.gene060259 | MS.gene58527 | 0.819963 | 8.81E-53 | -1.69E-46 |
| MS.gene060964 | MS.gene58527 | 0.803347 | 3.64E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58527.t1 | MTR_5g037540 | 94.939 | 494 | 23 | 2 | 1 | 492 | 1 | 494 | 0.0 | 969 |
| MS.gene58527.t1 | MTR_5g037540 | 95.238 | 483 | 21 | 2 | 1 | 481 | 1 | 483 | 0.0 | 952 |
| MS.gene58527.t1 | MTR_8g061880 | 57.227 | 512 | 188 | 8 | 1 | 488 | 1 | 505 | 0.0 | 563 |
| MS.gene58527.t1 | MTR_2g011370 | 51.447 | 311 | 117 | 7 | 203 | 482 | 1 | 308 | 4.09e-99 | 301 |
| MS.gene58527.t1 | MTR_2g011370 | 47.020 | 151 | 73 | 3 | 1 | 149 | 1 | 146 | 4.67e-36 | 136 |
| MS.gene58527.t1 | MTR_6g011240 | 51.447 | 311 | 111 | 5 | 203 | 476 | 1 | 308 | 1.29e-86 | 269 |
| MS.gene58527.t1 | MTR_6g011240 | 47.682 | 151 | 74 | 3 | 1 | 149 | 1 | 148 | 6.45e-37 | 138 |
| MS.gene58527.t1 | MTR_8g468650 | 67.347 | 147 | 42 | 2 | 218 | 364 | 20 | 160 | 1.84e-65 | 211 |
| MS.gene58527.t1 | MTR_8g468650 | 44.776 | 134 | 64 | 4 | 16 | 147 | 20 | 145 | 1.85e-24 | 101 |
| MS.gene58527.t1 | MTR_8g469980 | 58.621 | 174 | 61 | 3 | 269 | 435 | 718 | 887 | 7.15e-56 | 200 |
| MS.gene58527.t1 | MTR_8g469730 | 60.714 | 112 | 26 | 2 | 242 | 353 | 182 | 275 | 3.10e-38 | 142 |
| MS.gene58527.t1 | MTR_8g469800 | 67.949 | 78 | 24 | 1 | 382 | 458 | 12 | 89 | 2.28e-27 | 109 |
| MS.gene58527.t1 | MTR_8g469800 | 55.102 | 49 | 22 | 0 | 202 | 250 | 145 | 193 | 2.44e-12 | 66.6 |
| MS.gene58527.t1 | MTR_0785s0010 | 70.588 | 51 | 15 | 0 | 396 | 446 | 1 | 51 | 1.50e-18 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58527.t1 | AT1G27100 | 49.228 | 518 | 216 | 11 | 1 | 476 | 1 | 513 | 5.78e-153 | 446 |
| MS.gene58527.t1 | AT1G59710 | 60.067 | 298 | 105 | 3 | 203 | 486 | 1 | 298 | 1.90e-116 | 345 |
| MS.gene58527.t1 | AT1G59710 | 47.682 | 151 | 73 | 3 | 1 | 149 | 1 | 147 | 2.19e-35 | 134 |
| MS.gene58527.t1 | AT1G59710 | 60.751 | 293 | 101 | 3 | 203 | 481 | 1 | 293 | 4.54e-115 | 342 |
| MS.gene58527.t1 | AT1G59710 | 47.682 | 151 | 73 | 3 | 1 | 149 | 1 | 147 | 2.50e-35 | 134 |
| MS.gene58527.t1 | AT3G28630 | 57.432 | 296 | 105 | 5 | 200 | 476 | 30 | 323 | 7.99e-105 | 316 |
| MS.gene58527.t1 | AT3G28630 | 45.638 | 149 | 74 | 3 | 1 | 147 | 33 | 176 | 3.79e-34 | 131 |
| MS.gene58527.t1 | AT3G28630 | 58.511 | 282 | 110 | 4 | 200 | 476 | 30 | 309 | 1.75e-103 | 312 |
| MS.gene58527.t1 | AT3G28630 | 45.638 | 149 | 74 | 3 | 1 | 147 | 33 | 176 | 3.46e-34 | 131 |
| MS.gene58527.t1 | AT1G69890 | 55.755 | 278 | 116 | 2 | 203 | 476 | 1 | 275 | 1.26e-101 | 306 |
| MS.gene58527.t1 | AT1G69890 | 42.282 | 149 | 81 | 3 | 1 | 149 | 1 | 144 | 6.34e-32 | 124 |
| MS.gene58527.t1 | AT3G01311 | 52.482 | 282 | 112 | 6 | 203 | 480 | 1 | 264 | 5.87e-95 | 289 |
| MS.gene58527.t1 | AT3G01311 | 43.114 | 167 | 83 | 5 | 1 | 160 | 1 | 162 | 2.73e-30 | 119 |
| MS.gene58527.t1 | AT3G01311 | 52.482 | 282 | 112 | 6 | 203 | 480 | 1 | 264 | 1.33e-94 | 288 |
| MS.gene58527.t1 | AT3G01311 | 43.114 | 167 | 83 | 5 | 1 | 160 | 1 | 162 | 6.17e-30 | 119 |
| MS.gene58527.t1 | AT1G69900 | 43.229 | 384 | 170 | 9 | 1 | 339 | 1 | 381 | 1.20e-84 | 266 |
| MS.gene58527.t1 | AT1G69900 | 53.333 | 150 | 68 | 2 | 203 | 350 | 1 | 150 | 1.85e-45 | 164 |
| MS.gene58527.t1 | AT1G59710 | 73.826 | 149 | 39 | 0 | 203 | 351 | 1 | 149 | 1.89e-78 | 244 |
| MS.gene58527.t1 | AT1G59710 | 47.682 | 151 | 73 | 3 | 1 | 149 | 1 | 147 | 2.70e-36 | 134 |
Find 115 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTTCCTGTTAGGGTTAA+GGG | 0.195743 | 5.3:-25821501 | None:intergenic |
| ACCTGCATAGTCACATTATT+TGG | 0.198434 | 5.3:-25830356 | None:intergenic |
| GCCAATACGTGATGGGTTTC+AGG | 0.236473 | 5.3:+25821575 | MS.gene58527:CDS |
| ATATTACCCTCTTTCCTGTT+AGG | 0.251409 | 5.3:-25821509 | None:intergenic |
| GAGAGTTTGTTATCTTCTTT+TGG | 0.254540 | 5.3:+25821741 | MS.gene58527:CDS |
| CCTCTTTCCTGTTAGGGTTA+AGG | 0.264638 | 5.3:-25821502 | None:intergenic |
| CGGATAACGTTGTCGTAGTT+TGG | 0.277416 | 5.3:-25829013 | None:intergenic |
| ACAGAAGAATCCAAAGTCTT+TGG | 0.280690 | 5.3:-25829124 | None:intergenic |
| GGTATTTGTCTTGGTGGCTT+TGG | 0.285219 | 5.3:-25821314 | None:intergenic |
| ACACGAACACCATCCCTTAC+AGG | 0.328669 | 5.3:-25829157 | None:intergenic |
| TGAGGAAGAGACAGGGTTAG+AGG | 0.334303 | 5.3:+25830268 | MS.gene58527:CDS |
| TGTGACTATGCAGGTTGTTT+TGG | 0.349994 | 5.3:+25830364 | MS.gene58527:CDS |
| CGTTGTTGTCGTCGGCGATA+AGG | 0.350621 | 5.3:-25821335 | None:intergenic |
| CTTTGGATTCTTCTGTTGAA+TGG | 0.351344 | 5.3:+25829131 | MS.gene58527:CDS |
| GAGCTTAATGATCTTTGATT+TGG | 0.357554 | 5.3:-25821292 | None:intergenic |
| CTGTTGAATGGGAGCCTGTA+AGG | 0.358269 | 5.3:+25829143 | MS.gene58527:CDS |
| TGGCTCCGTTTCGGCTTTGA+CGG | 0.367449 | 5.3:-25821365 | None:intergenic |
| GTGGGATGTTGAAGGTGTTA+TGG | 0.369271 | 5.3:+25821707 | MS.gene58527:CDS |
| AAACTCATAACCAAGTAATA+AGG | 0.369988 | 5.3:+25821430 | MS.gene58527:CDS |
| CTCACTTGGGTCGTCGCCGC+CGG | 0.370649 | 5.3:+25821815 | MS.gene58527:CDS |
| CCGTATCCCTTAACCCTAAC+AGG | 0.371672 | 5.3:+25821495 | MS.gene58527:CDS |
| AGGTGTGCAGGGATATTCTT+TGG | 0.376870 | 5.3:+25830205 | MS.gene58527:CDS |
| TTGGTTCTTCCTTTCTCAAA+AGG | 0.382208 | 5.3:+25830383 | MS.gene58527:CDS |
| GACTCTTTAACCTTATTACT+TGG | 0.389023 | 5.3:-25821440 | None:intergenic |
| CATTCCGCTTCGAAGCTTGT+TGG | 0.389295 | 5.3:-25828852 | None:intergenic |
| TATTACCCTCTTTCCTGTTA+GGG | 0.391440 | 5.3:-25821508 | None:intergenic |
| ATTCCGCTTCGAAGCTTGTT+GGG | 0.414117 | 5.3:-25828851 | None:intergenic |
| TTTGGATTCTTCTGTTGAAT+GGG | 0.421483 | 5.3:+25829132 | MS.gene58527:CDS |
| CAACATGGTAGTATATAATT+CGG | 0.423752 | 5.3:-25830154 | None:intergenic |
| TAGGACTGTTACTCAGGATT+GGG | 0.427974 | 5.3:+25829267 | MS.gene58527:CDS |
| CGATAAGGTATTTGTCTTGG+TGG | 0.428684 | 5.3:-25821320 | None:intergenic |
| TCCGCATAGGACTGTTACTC+AGG | 0.434544 | 5.3:+25829261 | MS.gene58527:CDS |
| ACCGTTTCTGCCTTGTGAAA+CGG | 0.443389 | 5.3:-25828954 | None:intergenic |
| CCTGTTAGGGTTAAGGGATA+CGG | 0.444235 | 5.3:-25821495 | None:intergenic |
| TCAAACGAGTCCAAAGACTT+TGG | 0.448810 | 5.3:+25829114 | MS.gene58527:CDS |
| AAGGAGTGTCTGATGCTGTT+AGG | 0.450466 | 5.3:-25829060 | None:intergenic |
| TCCGTTTCACAAGGCAGAAA+CGG | 0.456163 | 5.3:+25828953 | MS.gene58527:CDS |
| ACCTGAAACCCATCACGTAT+TGG | 0.456780 | 5.3:-25821576 | None:intergenic |
| GGAATTGAGCAAGAAGATTG+AGG | 0.467306 | 5.3:+25830250 | MS.gene58527:CDS |
| GTGAAGCTGAAGACGAGGTA+TGG | 0.469674 | 5.3:+25829178 | MS.gene58527:CDS |
| AAGAAGATTGAGGAAGAGAC+AGG | 0.469690 | 5.3:+25830260 | MS.gene58527:CDS |
| AGGAAAGAGGGTAATATTAA+CGG | 0.470116 | 5.3:+25821515 | MS.gene58527:CDS |
| ATAGGACTGTTACTCAGGAT+TGG | 0.472028 | 5.3:+25829266 | MS.gene58527:CDS |
| GGCATGCTAGTTTCAAAAGC+TGG | 0.477841 | 5.3:-25829346 | None:intergenic |
| GAGGAAGAGACAGGGTTAGA+GGG | 0.482199 | 5.3:+25830269 | MS.gene58527:CDS |
| CGGCGATAAGGTATTTGTCT+TGG | 0.486854 | 5.3:-25821323 | None:intergenic |
| TGTTTCAGTGGCAAGAGAGT+TGG | 0.488206 | 5.3:+25830976 | MS.gene58527:intron |
| AGTGAGCGATGAAGGTGTGC+AGG | 0.494263 | 5.3:+25830193 | MS.gene58527:CDS |
| ATCCGTCTCAAAAGCTGTTA+CGG | 0.495453 | 5.3:+25829031 | MS.gene58527:CDS |
| CCCGTCATACCAAGAAGAAA+AGG | 0.497537 | 5.3:-25829079 | None:intergenic |
| ATTCGGCCCTCCATCTTCCT+AGG | 0.509706 | 5.3:-25830137 | None:intergenic |
| TCCAAATAATGTGACTATGC+AGG | 0.511969 | 5.3:+25830355 | MS.gene58527:CDS |
| TTCAGTGGCAAGAGAGTTGG+AGG | 0.512045 | 5.3:+25830979 | MS.gene58527:intron |
| GTTTCAAAAGCTGGAGCAGA+AGG | 0.512100 | 5.3:-25829337 | None:intergenic |
| GGATAAAGCTTTCCATTCAA+AGG | 0.513084 | 5.3:-25830314 | None:intergenic |
| TCACAACGGAAAATATTTAA+CGG | 0.513669 | 5.3:+25821461 | MS.gene58527:CDS |
| AGCTGAGGAGTTGTTGTGGG+AGG | 0.535173 | 5.3:+25821601 | MS.gene58527:CDS |
| CCTTAACCCTAACAGGAAAG+AGG | 0.535529 | 5.3:+25821502 | MS.gene58527:CDS |
| CGCCATCATCTTCAGCAACA+TGG | 0.538355 | 5.3:-25830169 | None:intergenic |
| GGGTCGTCGCCGCCGGCGAG+AGG | 0.541837 | 5.3:+25821822 | MS.gene58527:CDS |
| TGCATAGTCACATTATTTGG+AGG | 0.542912 | 5.3:-25830353 | None:intergenic |
| GATGGCGAAGTGAGCGATGA+AGG | 0.543891 | 5.3:+25830185 | MS.gene58527:CDS |
| TGATGCATCACCTAGGAAGA+TGG | 0.544905 | 5.3:+25830127 | MS.gene58527:CDS |
| TTTCAAAGGGAATGGAGTTG+AGG | 0.545121 | 5.3:+25830229 | MS.gene58527:CDS |
| TGTCGTGGTGGCTTCTGAGA+CGG | 0.548754 | 5.3:-25828901 | None:intergenic |
| TGAAGCTGAAGACGAGGTAT+GGG | 0.549313 | 5.3:+25829179 | MS.gene58527:CDS |
| CTAGGAGGATTCACCACAGC+AGG | 0.553912 | 5.3:-25829373 | None:intergenic |
| CAACAAGCTTCGAAGCGGAA+TGG | 0.557721 | 5.3:+25828853 | MS.gene58527:CDS |
| AAAGTCCGTCAAAGCCGAAA+CGG | 0.559086 | 5.3:+25821360 | MS.gene58527:CDS |
| CTTAACCCTAACAGGAAAGA+GGG | 0.559872 | 5.3:+25821503 | MS.gene58527:CDS |
| GAAAAGCTAGCAGAAACACT+AGG | 0.561376 | 5.3:-25829391 | None:intergenic |
| GAATGGCAGCCAATACGTGA+TGG | 0.564788 | 5.3:+25821567 | MS.gene58527:CDS |
| TGTTGAATGGGAGCCTGTAA+GGG | 0.572736 | 5.3:+25829144 | MS.gene58527:CDS |
| TGAAGCTGAGGAGTTGTTGT+GGG | 0.573285 | 5.3:+25821598 | MS.gene58527:CDS |
| ATATTAACGGAGTTAGAAAA+CGG | 0.580788 | 5.3:+25821528 | MS.gene58527:CDS |
| GAGCCATTAAAAGAGCTCAA+TGG | 0.582431 | 5.3:+25821382 | MS.gene58527:CDS |
| CTTATCGCCGACGACAACAA+CGG | 0.587613 | 5.3:+25821336 | MS.gene58527:CDS |
| GGAATGGTGGGTTGCCACCG+TGG | 0.591207 | 5.3:+25829215 | MS.gene58527:CDS |
| TGTACTAAGAGTCCTTTGAA+TGG | 0.592487 | 5.3:+25830302 | MS.gene58527:CDS |
| GGATTCACCACAGCAGGAGA+AGG | 0.593106 | 5.3:-25829367 | None:intergenic |
| AATGGCAGCCAATACGTGAT+GGG | 0.593382 | 5.3:+25821568 | MS.gene58527:CDS |
| GCAAGAGAGTTGGAGGCACA+AGG | 0.599528 | 5.3:+25830986 | MS.gene58527:CDS |
| CTGCTAGAAGATATTTGTCG+TGG | 0.604641 | 5.3:-25828916 | None:intergenic |
| GTGAGCGATGAAGGTGTGCA+GGG | 0.606717 | 5.3:+25830194 | MS.gene58527:CDS |
| TACCATGTTGCTGAAGATGA+TGG | 0.607623 | 5.3:+25830167 | MS.gene58527:CDS |
| CTAGAAGATATTTGTCGTGG+TGG | 0.618659 | 5.3:-25828913 | None:intergenic |
| ACCTGAAAACTTCCTCTCGC+CGG | 0.618862 | 5.3:-25821834 | None:intergenic |
| ATGGTGGGTTGCCACCGTGG+AGG | 0.619425 | 5.3:+25829218 | MS.gene58527:CDS |
| ATCGTTACACTGTTCCTCCA+CGG | 0.621036 | 5.3:-25821651 | None:intergenic |
| ACGGTTCATCAAACAACGCA+AGG | 0.621210 | 5.3:+25828972 | MS.gene58527:CDS |
| CCAAGTGAGAAAACACTCAT+CGG | 0.623585 | 5.3:-25821801 | None:intergenic |
| GTGAAGCTGAGGAGTTGTTG+TGG | 0.625119 | 5.3:+25821597 | MS.gene58527:CDS |
| ATGGGTTTCAGGTGAAGCTG+AGG | 0.630925 | 5.3:+25821586 | MS.gene58527:CDS |
| TAGCATGCCTTCTCCTGCTG+TGG | 0.631364 | 5.3:+25829360 | MS.gene58527:CDS |
| TGCATCACCTAGGAAGATGG+AGG | 0.642565 | 5.3:+25830130 | MS.gene58527:CDS |
| AAACCCAACAAGCTTCGAAG+CGG | 0.642582 | 5.3:+25828848 | MS.gene58527:CDS |
| ACGGTAGTAATCCGCCGTGG+AGG | 0.648877 | 5.3:+25821637 | MS.gene58527:CDS |
| TGCGTCACAGTATTCCTCCA+CGG | 0.649285 | 5.3:-25829232 | None:intergenic |
| GCATCACCTAGGAAGATGGA+GGG | 0.651328 | 5.3:+25830131 | MS.gene58527:CDS |
| AGAAGATTGAGGAAGAGACA+GGG | 0.656890 | 5.3:+25830261 | MS.gene58527:CDS |
| CGAATGATGATGCATCACCT+AGG | 0.657346 | 5.3:+25830120 | MS.gene58527:CDS |
| GGAGGAAGCTGCAAACGAAG+AGG | 0.659577 | 5.3:-25830335 | None:intergenic |
| GATGAAGAATCCGTTTCACA+AGG | 0.662746 | 5.3:+25828944 | MS.gene58527:CDS |
| GAATGGGAGCCTGTAAGGGA+TGG | 0.663159 | 5.3:+25829148 | MS.gene58527:CDS |
| TGACGCATGATATTCCGCAT+AGG | 0.668875 | 5.3:+25829248 | MS.gene58527:CDS |
| TAAAAGAGCTCAATGGACAG+TGG | 0.674821 | 5.3:+25821389 | MS.gene58527:CDS |
| TGAAAACTTCCTCTCGCCGG+CGG | 0.678031 | 5.3:-25821831 | None:intergenic |
| GTTACACTGTTCCTCCACGG+CGG | 0.685062 | 5.3:-25821648 | None:intergenic |
| TTCGTGTGAAGCTGAAGACG+AGG | 0.686023 | 5.3:+25829173 | MS.gene58527:CDS |
| AAGCTAGCAGAAACACTAGG+AGG | 0.698690 | 5.3:-25829388 | None:intergenic |
| TCCTGAGTAACAGTCCTATG+CGG | 0.703666 | 5.3:-25829262 | None:intergenic |
| GAAACGGTAGTAATCCGCCG+TGG | 0.715772 | 5.3:+25821634 | MS.gene58527:CDS |
| ATAAGGTTAAAGAGTCACAA+CGG | 0.725704 | 5.3:+25821447 | MS.gene58527:CDS |
| GTTCATCAAACAACGCAAGG+TGG | 0.751402 | 5.3:+25828975 | MS.gene58527:CDS |
| GTCACAGTATTCCTCCACGG+TGG | 0.799476 | 5.3:-25829229 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 25821279 | 25831018 | 25821279 | ID=MS.gene58527 |
| chr5.3 | mRNA | 25821279 | 25831018 | 25821279 | ID=MS.gene58527.t1;Parent=MS.gene58527 |
| chr5.3 | exon | 25821279 | 25821854 | 25821279 | ID=MS.gene58527.t1.exon1;Parent=MS.gene58527.t1 |
| chr5.3 | CDS | 25821279 | 25821854 | 25821279 | ID=cds.MS.gene58527.t1;Parent=MS.gene58527.t1 |
| chr5.3 | exon | 25828842 | 25829423 | 25828842 | ID=MS.gene58527.t1.exon2;Parent=MS.gene58527.t1 |
| chr5.3 | CDS | 25828842 | 25829423 | 25828842 | ID=cds.MS.gene58527.t1;Parent=MS.gene58527.t1 |
| chr5.3 | exon | 25830119 | 25830404 | 25830119 | ID=MS.gene58527.t1.exon3;Parent=MS.gene58527.t1 |
| chr5.3 | CDS | 25830119 | 25830404 | 25830119 | ID=cds.MS.gene58527.t1;Parent=MS.gene58527.t1 |
| chr5.3 | exon | 25830984 | 25831018 | 25830984 | ID=MS.gene58527.t1.exon4;Parent=MS.gene58527.t1 |
| chr5.3 | CDS | 25830984 | 25831018 | 25830984 | ID=cds.MS.gene58527.t1;Parent=MS.gene58527.t1 |
| Gene Sequence |
| Protein sequence |
