Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58584.t1 | XP_003613416.2 | 98.1 | 316 | 6 | 0 | 1 | 316 | 36 | 351 | 1.10E-180 | 642.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58584.t1 | O04529 | 57.8 | 313 | 119 | 3 | 5 | 304 | 25 | 337 | 3.0e-102 | 373.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58584.t1 | G7K5L1 | 98.1 | 316 | 6 | 0 | 1 | 316 | 36 | 351 | 7.8e-181 | 642.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050363 | MS.gene58584 | 0.809859 | 1.54E-50 | -1.69E-46 |
| MS.gene050381 | MS.gene58584 | 0.81637 | 5.73E-52 | -1.69E-46 |
| MS.gene050883 | MS.gene58584 | 0.836675 | 8.14E-57 | -1.69E-46 |
| MS.gene051044 | MS.gene58584 | 0.808989 | 2.36E-50 | -1.69E-46 |
| MS.gene051127 | MS.gene58584 | 0.815126 | 1.08E-51 | -1.69E-46 |
| MS.gene051946 | MS.gene58584 | 0.808302 | 3.31E-50 | -1.69E-46 |
| MS.gene052053 | MS.gene58584 | 0.806263 | 8.96E-50 | -1.69E-46 |
| MS.gene052566 | MS.gene58584 | 0.81014 | 1.34E-50 | -1.69E-46 |
| MS.gene055549 | MS.gene58584 | 0.840362 | 9.10E-58 | -1.69E-46 |
| MS.gene055550 | MS.gene58584 | 0.835911 | 1.27E-56 | -1.69E-46 |
| MS.gene055551 | MS.gene58584 | 0.825395 | 4.80E-54 | -1.69E-46 |
| MS.gene056310 | MS.gene58584 | 0.82131 | 4.32E-53 | -1.69E-46 |
| MS.gene056311 | MS.gene58584 | 0.842369 | 2.70E-58 | -1.69E-46 |
| MS.gene056365 | MS.gene58584 | 0.801429 | 9.04E-49 | -1.69E-46 |
| MS.gene057001 | MS.gene58584 | 0.800697 | 1.28E-48 | -1.69E-46 |
| MS.gene057014 | MS.gene58584 | 0.836212 | 1.07E-56 | -1.69E-46 |
| MS.gene058493 | MS.gene58584 | 0.8117 | 6.14E-51 | -1.69E-46 |
| MS.gene058628 | MS.gene58584 | 0.897032 | 2.08E-76 | -1.69E-46 |
| MS.gene058629 | MS.gene58584 | 0.896426 | 3.73E-76 | -1.69E-46 |
| MS.gene058630 | MS.gene58584 | 0.897506 | 1.32E-76 | -1.69E-46 |
| MS.gene059690 | MS.gene58584 | 0.80107 | 1.07E-48 | -1.69E-46 |
| MS.gene059694 | MS.gene58584 | 0.801588 | 8.39E-49 | -1.69E-46 |
| MS.gene059697 | MS.gene58584 | 0.801824 | 7.50E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58584.t1 | MTR_5g036410 | 98.101 | 316 | 6 | 0 | 1 | 316 | 36 | 351 | 0.0 | 646 |
| MS.gene58584.t1 | MTR_8g062770 | 66.129 | 310 | 99 | 1 | 10 | 313 | 39 | 348 | 2.34e-150 | 427 |
| MS.gene58584.t1 | MTR_5g012680 | 49.834 | 301 | 130 | 5 | 12 | 306 | 43 | 328 | 2.86e-99 | 297 |
| MS.gene58584.t1 | MTR_8g005900 | 45.875 | 303 | 150 | 5 | 19 | 316 | 39 | 332 | 9.40e-89 | 270 |
| MS.gene58584.t1 | MTR_5g036080 | 43.357 | 286 | 135 | 10 | 14 | 293 | 57 | 321 | 1.59e-63 | 204 |
| MS.gene58584.t1 | MTR_6g008480 | 35.452 | 299 | 156 | 5 | 18 | 290 | 42 | 329 | 4.09e-57 | 188 |
| MS.gene58584.t1 | MTR_5g036087 | 37.778 | 270 | 147 | 8 | 27 | 290 | 58 | 312 | 1.33e-45 | 159 |
| MS.gene58584.t1 | MTR_5g036083 | 37.453 | 267 | 133 | 6 | 31 | 295 | 44 | 278 | 3.39e-45 | 157 |
| MS.gene58584.t1 | MTR_5g036093 | 35.338 | 266 | 152 | 6 | 33 | 292 | 35 | 286 | 2.12e-41 | 147 |
| MS.gene58584.t1 | MTR_5g036290 | 35.688 | 269 | 144 | 8 | 29 | 292 | 87 | 331 | 5.87e-39 | 142 |
| MS.gene58584.t1 | MTR_5g036270 | 33.548 | 310 | 160 | 11 | 31 | 295 | 5 | 313 | 7.54e-38 | 138 |
| MS.gene58584.t1 | MTR_5g036360 | 34.066 | 273 | 151 | 7 | 24 | 292 | 74 | 321 | 6.33e-37 | 136 |
| MS.gene58584.t1 | MTR_5g036310 | 29.348 | 276 | 130 | 10 | 24 | 295 | 66 | 280 | 2.76e-21 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58584.t1 | AT1G70170 | 57.827 | 313 | 119 | 3 | 5 | 304 | 25 | 337 | 1.17e-129 | 375 |
| MS.gene58584.t1 | AT1G24140 | 55.806 | 310 | 128 | 3 | 1 | 301 | 30 | 339 | 1.66e-124 | 362 |
| MS.gene58584.t1 | AT1G59970 | 53.968 | 315 | 134 | 4 | 1 | 312 | 29 | 335 | 5.88e-114 | 335 |
| MS.gene58584.t1 | AT4G16640 | 48.148 | 297 | 136 | 6 | 14 | 306 | 52 | 334 | 5.00e-88 | 269 |
| MS.gene58584.t1 | AT2G45040 | 48.529 | 272 | 115 | 6 | 32 | 297 | 50 | 302 | 8.56e-82 | 252 |
Find 81 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTCATCAGATATTAAATT+AGG | 0.157039 | 5.3:+24869215 | MS.gene58584:CDS |
| CATGAAATAGGTCATTTATT+AGG | 0.161352 | 5.3:+24869419 | MS.gene58584:CDS |
| GAAGGGATTCAAATGCTTTA+TGG | 0.163456 | 5.3:+24869530 | MS.gene58584:CDS |
| GTAGTTGTCCCTGTAAAATT+AGG | 0.201015 | 5.3:-24869560 | None:intergenic |
| CTCTGGCCAGCGTGGCTGGC+CGG | 0.272680 | 5.3:-24869060 | None:intergenic |
| TCTGGCCAGCGTGGCTGGCC+GGG | 0.281183 | 5.3:-24869059 | None:intergenic |
| ATGAAATAGGTCATTTATTA+GGG | 0.288245 | 5.3:+24869420 | MS.gene58584:CDS |
| TTCCCTCTGGCCAGCGTGGC+TGG | 0.289881 | 5.3:-24869064 | None:intergenic |
| TTCTTTGAATTCCAGGAGAT+TGG | 0.312934 | 5.3:+24871145 | MS.gene58584:intron |
| GTTCATCAGATATTAAATTA+GGG | 0.315071 | 5.3:+24869216 | MS.gene58584:CDS |
| AAGGGATTCAAATGCTTTAT+GGG | 0.316052 | 5.3:+24869531 | MS.gene58584:CDS |
| AAATTTGAAGGTGGCGCGTT+GGG | 0.326354 | 5.3:-24868816 | None:intergenic |
| AGGGATAGAGAATCTAGTTT+TGG | 0.345074 | 5.3:+24869593 | MS.gene58584:CDS |
| ATAGGTCATTTATTAGGGTT+AGG | 0.349255 | 5.3:+24869425 | MS.gene58584:CDS |
| ATTTAGATAAAGCAGAAGAT+TGG | 0.364719 | 5.3:+24869330 | MS.gene58584:CDS |
| TCTTCCCCGGCCAGCCACGC+TGG | 0.381654 | 5.3:+24869054 | MS.gene58584:CDS |
| TAGGATCGAAAGCGTAGGTT+AGG | 0.384157 | 5.3:-24869094 | None:intergenic |
| GGTTCGGACGGCGGATTCTA+AGG | 0.384424 | 5.3:-24868859 | None:intergenic |
| TCTGTTGTGGTTCATGAAAT+AGG | 0.392934 | 5.3:+24869407 | MS.gene58584:CDS |
| TAGTTGTCCCTGTAAAATTA+GGG | 0.403688 | 5.3:-24869559 | None:intergenic |
| CTGGCCAGCGTGGCTGGCCG+GGG | 0.404433 | 5.3:-24869058 | None:intergenic |
| TTGTACCCATCCCACGCGCC+TGG | 0.434161 | 5.3:-24868711 | None:intergenic |
| TGTTGAGGTTGAAATTCTTT+TGG | 0.436136 | 5.3:-24868884 | None:intergenic |
| GTTAGGGTTTGTGTTCCCTC+TGG | 0.439518 | 5.3:-24869077 | None:intergenic |
| GAAGCATTTGACGGAGTCCT+TGG | 0.447406 | 5.3:+24869266 | MS.gene58584:CDS |
| TTTAGATAAAGCAGAAGATT+GGG | 0.451565 | 5.3:+24869331 | MS.gene58584:CDS |
| TCAAGATATTTATTCATCAC+TGG | 0.452627 | 5.3:-24871175 | None:intergenic |
| TAGGTCATTTATTAGGGTTA+GGG | 0.476335 | 5.3:+24869426 | MS.gene58584:CDS |
| AACTTCACCGGCTGCAGCCG+CGG | 0.481967 | 5.3:+24868735 | MS.gene58584:CDS |
| CACCACCAGGCGCGTGGGAT+GGG | 0.482425 | 5.3:+24868706 | MS.gene58584:CDS |
| GTTTGCGAAAACTTGTTTCG+TGG | 0.484187 | 5.3:-24869135 | None:intergenic |
| TTCGTTCTTGAACTTATCGT+AGG | 0.494239 | 5.3:-24869479 | None:intergenic |
| GTACATAATAGCCTCTTCAA+TGG | 0.498583 | 5.3:-24869456 | None:intergenic |
| AAGTCATCGGTGAAATTTGA+AGG | 0.507768 | 5.3:-24868828 | None:intergenic |
| GCACCACCAGGCGCGTGGGA+TGG | 0.518271 | 5.3:+24868705 | MS.gene58584:CDS |
| TCGTTCTTGAACTTATCGTA+GGG | 0.525939 | 5.3:-24869478 | None:intergenic |
| CGGCCAGCCACGCTGGCCAG+AGG | 0.527296 | 5.3:+24869061 | MS.gene58584:CDS |
| GGCCAGCCACGCTGGCCAGA+GGG | 0.527568 | 5.3:+24869062 | MS.gene58584:CDS |
| GCACACTATTCATTCTTCCC+CGG | 0.533542 | 5.3:+24869041 | MS.gene58584:CDS |
| GGACAACTACTGCTACTTCG+AGG | 0.534224 | 5.3:+24869573 | MS.gene58584:CDS |
| TAAGGCCTCGTCGAAGTCAT+CGG | 0.537169 | 5.3:-24868841 | None:intergenic |
| CTTGTTTCGTGGCGTCGTCG+AGG | 0.538320 | 5.3:-24869124 | None:intergenic |
| CTTGAGAGTGATGATATTGA+AGG | 0.545826 | 5.3:+24869512 | MS.gene58584:CDS |
| CGTTGCATCGTCGAGTTCAC+CGG | 0.549154 | 5.3:-24868910 | None:intergenic |
| AGGATCGAAAGCGTAGGTTA+GGG | 0.550489 | 5.3:-24869093 | None:intergenic |
| CCACGCGCCTGGTGGTGCGT+TGG | 0.556501 | 5.3:-24868700 | None:intergenic |
| TGCAACAGTGTGGAAGTTTG+TGG | 0.558255 | 5.3:-24869021 | None:intergenic |
| AGGGCATTCTTCCATTGAAG+AGG | 0.560714 | 5.3:+24869445 | MS.gene58584:CDS |
| CGAGTTCACCGGTGATGTTG+AGG | 0.562539 | 5.3:-24868899 | None:intergenic |
| GCAGAAGATTGGGTAGTTAG+CGG | 0.562948 | 5.3:+24869341 | MS.gene58584:CDS |
| AATTTGAAGGTGGCGCGTTG+GGG | 0.563031 | 5.3:-24868815 | None:intergenic |
| AAATGTAATCTTCCGTCAGT+TGG | 0.563519 | 5.3:-24869311 | None:intergenic |
| CCAACGCACCACCAGGCGCG+TGG | 0.566983 | 5.3:+24868700 | MS.gene58584:CDS |
| GAAATTTGAAGGTGGCGCGT+TGG | 0.568484 | 5.3:-24868817 | None:intergenic |
| AATTCTACCAACGCACCACC+AGG | 0.571636 | 5.3:+24868693 | MS.gene58584:CDS |
| GGTAGTTAGCGGAGATGTAA+CGG | 0.580611 | 5.3:+24869352 | MS.gene58584:CDS |
| GAGGTGATCAAGATGATAAG+AGG | 0.583416 | 5.3:-24871204 | None:intergenic |
| AATTTCAACCTCAACATCAC+CGG | 0.584106 | 5.3:+24868891 | MS.gene58584:CDS |
| TTGAGAGTGATGATATTGAA+GGG | 0.584160 | 5.3:+24869513 | MS.gene58584:CDS |
| GGTGACGGAGAAGCATTTGA+CGG | 0.584989 | 5.3:+24869257 | MS.gene58584:CDS |
| TACCCATCCCACGCGCCTGG+TGG | 0.585085 | 5.3:-24868708 | None:intergenic |
| GACAACTACTGCTACTTCGA+GGG | 0.587368 | 5.3:+24869574 | MS.gene58584:CDS |
| TATAGTGGGGACCATGGTGA+CGG | 0.588206 | 5.3:+24869242 | MS.gene58584:CDS |
| TGTTGATTTAGAATCTGTTG+TGG | 0.605486 | 5.3:+24869394 | MS.gene58584:CDS |
| CGTTGGGGATATAGCCGAAG+TGG | 0.608198 | 5.3:-24868800 | None:intergenic |
| AAGCGTGTGCTAATGTTCCA+AGG | 0.614495 | 5.3:-24869283 | None:intergenic |
| CAACGCACCACCAGGCGCGT+GGG | 0.616925 | 5.3:+24868701 | MS.gene58584:CDS |
| AGCCGCGGCAAAACTTATGA+CGG | 0.625110 | 5.3:+24868750 | MS.gene58584:CDS |
| GGTACAACCTCCATGAACTC+CGG | 0.628579 | 5.3:+24868981 | MS.gene58584:CDS |
| GGTGCGTTGGTAGAATTCCA+TGG | 0.631316 | 5.3:-24868687 | None:intergenic |
| TACATCGTCAAGCCACGTTG+TGG | 0.633991 | 5.3:+24868939 | MS.gene58584:CDS |
| TGTGTTCCCTCTGGCCAGCG+TGG | 0.645696 | 5.3:-24869068 | None:intergenic |
| TTCACTAGGATCGAAAGCGT+AGG | 0.647088 | 5.3:-24869099 | None:intergenic |
| CAAATGCTTCTCCGTCACCA+TGG | 0.647782 | 5.3:-24869253 | None:intergenic |
| ATCCATCTTCAATGCCACCA+TGG | 0.654699 | 5.3:+24868670 | None:intergenic |
| GGTGTAGCTGATATCATCAA+CGG | 0.676861 | 5.3:+24868960 | MS.gene58584:CDS |
| TCATCGGTGAAATTTGAAGG+TGG | 0.680753 | 5.3:-24868825 | None:intergenic |
| ATGAATAGTGTGCAACAGTG+TGG | 0.693351 | 5.3:-24869031 | None:intergenic |
| TTTCACCGATGACTTCGACG+AGG | 0.776041 | 5.3:+24868836 | MS.gene58584:CDS |
| ATATCAGCTACACCACAACG+TGG | 0.791932 | 5.3:-24868951 | None:intergenic |
| GCGTTGGTAGAATTCCATGG+TGG | 0.806564 | 5.3:-24868684 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGGATTATAATTTTAATTTA+AGG | + | chr5.3:24869848-24869867 | MS.gene58584:intron | 10.0% |
| !!! | TTATAATTTTAATTTAAGGT+TGG | + | chr5.3:24869852-24869871 | MS.gene58584:intron | 10.0% |
| !!! | TTTTTTTTGTGATAACTTTT+TGG | + | chr5.3:24869815-24869834 | MS.gene58584:intron | 15.0% |
| !! | AGTTCATCAGATATTAAATT+AGG | + | chr5.3:24869215-24869234 | MS.gene58584:CDS | 20.0% |
| !! | ATACTTAGATAGTATTTACA+CGG | + | chr5.3:24869725-24869744 | MS.gene58584:intron | 20.0% |
| !! | ATGAAATAGGTCATTTATTA+GGG | + | chr5.3:24869420-24869439 | MS.gene58584:CDS | 20.0% |
| !! | GTTCATCAGATATTAAATTA+GGG | + | chr5.3:24869216-24869235 | MS.gene58584:CDS | 20.0% |
| !! | TATATGATACGTATACTATA+CGG | + | chr5.3:24869759-24869778 | MS.gene58584:intron | 20.0% |
| !! | TATTTATTCATCAGTTTCTA+TGG | - | chr5.3:24870634-24870653 | None:intergenic | 20.0% |
| !!! | ATTAAATTAGGGTTTTATAG+TGG | + | chr5.3:24869227-24869246 | MS.gene58584:CDS | 20.0% |
| !!! | GATATTTATTTTGTTACAGA+TGG | + | chr5.3:24870216-24870235 | MS.gene58584:intron | 20.0% |
| !!! | TTAAATTAGGGTTTTATAGT+GGG | + | chr5.3:24869228-24869247 | MS.gene58584:CDS | 20.0% |
| ! | AAATCCATGAAACATGTTAA+GGG | + | chr5.3:24870473-24870492 | MS.gene58584:intron | 25.0% |
| ! | AACATGGAAGATAAATTAGA+GGG | + | chr5.3:24870300-24870319 | MS.gene58584:intron | 25.0% |
| ! | AATTGTCCACTTGAATTTAA+AGG | + | chr5.3:24870080-24870099 | MS.gene58584:intron | 25.0% |
| ! | ATTTAGATAAAGCAGAAGAT+TGG | + | chr5.3:24869330-24869349 | MS.gene58584:CDS | 25.0% |
| ! | CATGAAATAGGTCATTTATT+AGG | + | chr5.3:24869419-24869438 | MS.gene58584:CDS | 25.0% |
| ! | GGAAAATACAACGAAAAAAT+GGG | + | chr5.3:24870237-24870256 | MS.gene58584:intron | 25.0% |
| ! | TCAAGATATTTATTCATCAC+TGG | - | chr5.3:24871178-24871197 | None:intergenic | 25.0% |
| ! | TGGAAAATACAACGAAAAAA+TGG | + | chr5.3:24870236-24870255 | MS.gene58584:intron | 25.0% |
| ! | TTTAGATAAAGCAGAAGATT+GGG | + | chr5.3:24869331-24869350 | MS.gene58584:CDS | 25.0% |
| !!! | AGTTTTAACCATCAAACAAT+TGG | + | chr5.3:24870109-24870128 | MS.gene58584:intron | 25.0% |
| !!! | TAAATTAGGGTTTTATAGTG+GGG | + | chr5.3:24869229-24869248 | MS.gene58584:CDS | 25.0% |
| !!! | TTTTTGTCTTTGTTGTTTCT+TGG | + | chr5.3:24869638-24869657 | MS.gene58584:intron | 25.0% |
| AAAAACTACTTCAACCACTT+CGG | + | chr5.3:24868786-24868805 | MS.gene58584:CDS | 30.0% | |
| AAGGGATTCAAATGCTTTAT+GGG | + | chr5.3:24869531-24869550 | MS.gene58584:CDS | 30.0% | |
| AATCCAATTAACACTTGTCT+TGG | - | chr5.3:24870050-24870069 | None:intergenic | 30.0% | |
| AATCCATGAAACATGTTAAG+GGG | + | chr5.3:24870474-24870493 | MS.gene58584:intron | 30.0% | |
| ACATGGAAGATAAATTAGAG+GGG | + | chr5.3:24870301-24870320 | MS.gene58584:intron | 30.0% | |
| ACTAACACAAATCTATACCA+CGG | + | chr5.3:24870562-24870581 | MS.gene58584:intron | 30.0% | |
| ACTTACAACCAATTGTTTGA+TGG | - | chr5.3:24870120-24870139 | None:intergenic | 30.0% | |
| AGATAGTATTTACACGGAAT+AGG | + | chr5.3:24869731-24869750 | MS.gene58584:intron | 30.0% | |
| ATAGGTCATTTATTAGGGTT+AGG | + | chr5.3:24869425-24869444 | MS.gene58584:CDS | 30.0% | |
| CAAATCCATGAAACATGTTA+AGG | + | chr5.3:24870472-24870491 | MS.gene58584:intron | 30.0% | |
| CAACATGGAAGATAAATTAG+AGG | + | chr5.3:24870299-24870318 | MS.gene58584:intron | 30.0% | |
| CCAAAAAACTCATATTGGAA+CGG | - | chr5.3:24870193-24870212 | None:intergenic | 30.0% | |
| GATAGTATTTACACGGAATA+GGG | + | chr5.3:24869732-24869751 | MS.gene58584:intron | 30.0% | |
| GTTATGAATCAGAGAGATTA+TGG | + | chr5.3:24870999-24871018 | MS.gene58584:intron | 30.0% | |
| GTTTGTCCTTTAAATTCAAG+TGG | - | chr5.3:24870089-24870108 | None:intergenic | 30.0% | |
| TAGGTCATTTATTAGGGTTA+GGG | + | chr5.3:24869426-24869445 | MS.gene58584:CDS | 30.0% | |
| TAGTTGTCCCTGTAAAATTA+GGG | - | chr5.3:24869562-24869581 | None:intergenic | 30.0% | |
| TATGGTTTGAAAACAACTAC+CGG | - | chr5.3:24869953-24869972 | None:intergenic | 30.0% | |
| TCCTTCCAAAAAACTCATAT+TGG | - | chr5.3:24870198-24870217 | None:intergenic | 30.0% | |
| TTGAGAGTGATGATATTGAA+GGG | + | chr5.3:24869513-24869532 | MS.gene58584:CDS | 30.0% | |
| TTTGTCATGCTCGTTAATTA+AGG | + | chr5.3:24869909-24869928 | MS.gene58584:intron | 30.0% | |
| ! | CTCAATGATTTTTCTCCATA+TGG | - | chr5.3:24869971-24869990 | None:intergenic | 30.0% |
| ! | TAGAAGATGAGTGATCTTTT+GGG | + | chr5.3:24870835-24870854 | MS.gene58584:intron | 30.0% |
| ! | TGAAATTCTTTTGGTAGGTT+CGG | - | chr5.3:24868878-24868897 | None:intergenic | 30.0% |
| ! | TGTTGAGGTTGAAATTCTTT+TGG | - | chr5.3:24868887-24868906 | None:intergenic | 30.0% |
| ! | TTAGAAGATGAGTGATCTTT+TGG | + | chr5.3:24870834-24870853 | MS.gene58584:intron | 30.0% |
| !! | AACTTTTTGGTCAACTTCTA+TGG | + | chr5.3:24869828-24869847 | MS.gene58584:intron | 30.0% |
| !! | GTAGTTGTTTTCAAACCATA+TGG | + | chr5.3:24869953-24869972 | MS.gene58584:intron | 30.0% |
| !! | TCTTTGTTGTTTCTTGGATT+TGG | + | chr5.3:24869644-24869663 | MS.gene58584:intron | 30.0% |
| !! | TGTTGATTTAGAATCTGTTG+TGG | + | chr5.3:24869394-24869413 | MS.gene58584:CDS | 30.0% |
| !!! | TCCAATATGAGTTTTTTGGA+AGG | + | chr5.3:24870194-24870213 | MS.gene58584:intron | 30.0% |
| AAATGTAATCTTCCGTCAGT+TGG | - | chr5.3:24869314-24869333 | None:intergenic | 35.0% | |
| AACTTAACCAGTCAACTTTG+TGG | + | chr5.3:24870797-24870816 | MS.gene58584:intron | 35.0% | |
| AAGTCATCGGTGAAATTTGA+AGG | - | chr5.3:24868831-24868850 | None:intergenic | 35.0% | |
| AATCCCCTTAACATGTTTCA+TGG | - | chr5.3:24870480-24870499 | None:intergenic | 35.0% | |
| AATTTCAACCTCAACATCAC+CGG | + | chr5.3:24868891-24868910 | MS.gene58584:CDS | 35.0% | |
| ATAGATTTGTGTTAGTCGAC+TGG | - | chr5.3:24870558-24870577 | None:intergenic | 35.0% | |
| ATGCCAAGACAAGTGTTAAT+TGG | + | chr5.3:24870044-24870063 | MS.gene58584:intron | 35.0% | |
| CAAATCTATACCACGGTAAA+AGG | + | chr5.3:24870569-24870588 | MS.gene58584:intron | 35.0% | |
| CGTTATTGTGAAGAGAAATG+AGG | + | chr5.3:24870874-24870893 | MS.gene58584:intron | 35.0% | |
| CTGGTTAAGTTTGATTGATC+TGG | - | chr5.3:24870788-24870807 | None:intergenic | 35.0% | |
| CTTGAGAGTGATGATATTGA+AGG | + | chr5.3:24869512-24869531 | MS.gene58584:CDS | 35.0% | |
| CTTGGCATTTGGATGAAAAT+CGG | - | chr5.3:24870032-24870051 | None:intergenic | 35.0% | |
| GAAGGGATTCAAATGCTTTA+TGG | + | chr5.3:24869530-24869549 | MS.gene58584:CDS | 35.0% | |
| GCTGATTGTTTGGATAAGTT+GGG | - | chr5.3:24870366-24870385 | None:intergenic | 35.0% | |
| GTACATAATAGCCTCTTCAA+TGG | - | chr5.3:24869459-24869478 | None:intergenic | 35.0% | |
| GTAGTTGTCCCTGTAAAATT+AGG | - | chr5.3:24869563-24869582 | None:intergenic | 35.0% | |
| TCATGCTCGTTAATTAAGGT+TGG | + | chr5.3:24869913-24869932 | MS.gene58584:intron | 35.0% | |
| TCCTGGAATTCAAAGAAGTA+GGG | - | chr5.3:24871142-24871161 | None:intergenic | 35.0% | |
| TCGTTCTTGAACTTATCGTA+GGG | - | chr5.3:24869481-24869500 | None:intergenic | 35.0% | |
| TCTGTTGTGGTTCATGAAAT+AGG | + | chr5.3:24869407-24869426 | MS.gene58584:CDS | 35.0% | |
| TTAACACTTGTCTTGGCATT+TGG | - | chr5.3:24870043-24870062 | None:intergenic | 35.0% | |
| TTCGTTCTTGAACTTATCGT+AGG | - | chr5.3:24869482-24869501 | None:intergenic | 35.0% | |
| TTCTTTGAATTCCAGGAGAT+TGG | + | chr5.3:24871145-24871164 | MS.gene58584:intron | 35.0% | |
| ! | AGAAGATGAGTGATCTTTTG+GGG | + | chr5.3:24870836-24870855 | MS.gene58584:intron | 35.0% |
| ! | GAGGTTGAAATTCTTTTGGT+AGG | - | chr5.3:24868883-24868902 | None:intergenic | 35.0% |
| ! | GGTCTAACCCTAATTTTACA+GGG | + | chr5.3:24869552-24869571 | MS.gene58584:CDS | 35.0% |
| ! | GTTGGTGTGAAATTTTGTAC+CGG | + | chr5.3:24869931-24869950 | MS.gene58584:intron | 35.0% |
| ! | TCGCAAACGCTTTTAATCAA+TGG | + | chr5.3:24869150-24869169 | MS.gene58584:CDS | 35.0% |
| ! | TGCTGATTGTTTGGATAAGT+TGG | - | chr5.3:24870367-24870386 | None:intergenic | 35.0% |
| !! | AGGGATAGAGAATCTAGTTT+TGG | + | chr5.3:24869593-24869612 | MS.gene58584:CDS | 35.0% |
| !! | TCGACGGGTTATTTGTTATT+TGG | - | chr5.3:24870532-24870551 | None:intergenic | 35.0% |
| !!! | CCGTTCCAATATGAGTTTTT+TGG | + | chr5.3:24870190-24870209 | MS.gene58584:intron | 35.0% |
| !!! | GATAGAGAATCTAGTTTTGG+TGG | + | chr5.3:24869596-24869615 | MS.gene58584:CDS | 35.0% |
| AAAACTCATATTGGAACGGC+TGG | - | chr5.3:24870189-24870208 | None:intergenic | 40.0% | |
| AAAAGGCAAGAATCTCAGCA+TGG | + | chr5.3:24870586-24870605 | MS.gene58584:intron | 40.0% | |
| AGTCAACTGAATCACATGCA+GGG | + | chr5.3:24870503-24870522 | MS.gene58584:intron | 40.0% | |
| ATCTCAGCATGGATGATACA+AGG | + | chr5.3:24870597-24870616 | MS.gene58584:intron | 40.0% | |
| ATGAATAGTGTGCAACAGTG+TGG | - | chr5.3:24869034-24869053 | None:intergenic | 40.0% | |
| CTCCTGGAATTCAAAGAAGT+AGG | - | chr5.3:24871143-24871162 | None:intergenic | 40.0% | |
| GAGAAATGAGGCAAAGAATG+AGG | + | chr5.3:24870886-24870905 | MS.gene58584:intron | 40.0% | |
| GAGGCAAAGAATGAGGAAAT+TGG | + | chr5.3:24870893-24870912 | MS.gene58584:intron | 40.0% | |
| GATGGGTACAAAAACTTCAC+CGG | + | chr5.3:24868723-24868742 | MS.gene58584:CDS | 40.0% | |
| GGTGTAGCTGATATCATCAA+CGG | + | chr5.3:24868960-24868979 | MS.gene58584:CDS | 40.0% | |
| TCATCGGTGAAATTTGAAGG+TGG | - | chr5.3:24868828-24868847 | None:intergenic | 40.0% | |
| TCCCTACTTCTTTGAATTCC+AGG | + | chr5.3:24871138-24871157 | MS.gene58584:intron | 40.0% | |
| TCTCAGCATGGATGATACAA+GGG | + | chr5.3:24870598-24870617 | MS.gene58584:intron | 40.0% | |
| TTATGTCATACCCTTCGAGA+AGG | - | chr5.3:24870399-24870418 | None:intergenic | 40.0% | |
| ! | ATTCTTTTGGTAGGTTCGGA+CGG | - | chr5.3:24868874-24868893 | None:intergenic | 40.0% |
| ! | CAACTTTGCTGCTGATTGTT+TGG | - | chr5.3:24870376-24870395 | None:intergenic | 40.0% |
| ! | GGAGCTAGAGTTGAATTTTC+CGG | - | chr5.3:24869003-24869022 | None:intergenic | 40.0% |
| ! | GGGTCTAACCCTAATTTTAC+AGG | + | chr5.3:24869551-24869570 | MS.gene58584:CDS | 40.0% |
| ! | GTTGAATTTTCCGGAGTTCA+TGG | - | chr5.3:24868994-24869013 | None:intergenic | 40.0% |
| ! | GTTTGCGAAAACTTGTTTCG+TGG | - | chr5.3:24869138-24869157 | None:intergenic | 40.0% |
| !!! | CTAGTTTTGGTGGAAGACAT+GGG | + | chr5.3:24869606-24869625 | MS.gene58584:CDS | 40.0% |
| !!! | TAGTTTTGGTGGAAGACATG+GGG | + | chr5.3:24869607-24869626 | MS.gene58584:CDS | 40.0% |
| !!! | TCTAGTTTTGGTGGAAGACA+TGG | + | chr5.3:24869605-24869624 | MS.gene58584:CDS | 40.0% |
| AAATTTGAAGGTGGCGCGTT+GGG | - | chr5.3:24868819-24868838 | None:intergenic | 45.0% | |
| AAGCGTGTGCTAATGTTCCA+AGG | - | chr5.3:24869286-24869305 | None:intergenic | 45.0% | |
| AGCAAAGTTGCCTTCTCGAA+GGG | + | chr5.3:24870386-24870405 | MS.gene58584:intron | 45.0% | |
| AGCAAGACCACAAAGTTGAC+TGG | - | chr5.3:24870807-24870826 | None:intergenic | 45.0% | |
| ATATCAGCTACACCACAACG+TGG | - | chr5.3:24868954-24868973 | None:intergenic | 45.0% | |
| GAGTCAACTGAATCACATGC+AGG | + | chr5.3:24870502-24870521 | MS.gene58584:intron | 45.0% | |
| GCACACTATTCATTCTTCCC+CGG | + | chr5.3:24869041-24869060 | MS.gene58584:CDS | 45.0% | |
| GCAGAAGATTGGGTAGTTAG+CGG | + | chr5.3:24869341-24869360 | MS.gene58584:CDS | 45.0% | |
| GGTAGTTAGCGGAGATGTAA+CGG | + | chr5.3:24869352-24869371 | MS.gene58584:CDS | 45.0% | |
| GTTAGTCGACTGGTATTCGA+CGG | - | chr5.3:24870548-24870567 | None:intergenic | 45.0% | |
| TGCAACAGTGTGGAAGTTTG+TGG | - | chr5.3:24869024-24869043 | None:intergenic | 45.0% | |
| TTAGTCGACTGGTATTCGAC+GGG | - | chr5.3:24870547-24870566 | None:intergenic | 45.0% | |
| ! | AACCGTCATAAGTTTTGCCG+CGG | - | chr5.3:24868755-24868774 | None:intergenic | 45.0% |
| ! | AGGATCGAAAGCGTAGGTTA+GGG | - | chr5.3:24869096-24869115 | None:intergenic | 45.0% |
| ! | AGGGCATTCTTCCATTGAAG+AGG | + | chr5.3:24869445-24869464 | MS.gene58584:CDS | 45.0% |
| ! | GAATTTTCCGGAGTTCATGG+AGG | - | chr5.3:24868991-24869010 | None:intergenic | 45.0% |
| ! | GACAACTACTGCTACTTCGA+GGG | + | chr5.3:24869574-24869593 | MS.gene58584:CDS | 45.0% |
| ! | GAGATTCTTGCCTTTTACCG+TGG | - | chr5.3:24870582-24870601 | None:intergenic | 45.0% |
| ! | TAGGATCGAAAGCGTAGGTT+AGG | - | chr5.3:24869097-24869116 | None:intergenic | 45.0% |
| ! | TTCACTAGGATCGAAAGCGT+AGG | - | chr5.3:24869102-24869121 | None:intergenic | 45.0% |
| !!! | CACGCTTTTTCACCAACTGA+CGG | + | chr5.3:24869299-24869318 | MS.gene58584:CDS | 45.0% |
| AATTCTACCAACGCACCACC+AGG | + | chr5.3:24868693-24868712 | MS.gene58584:CDS | 50.0% | |
| AATTTGAAGGTGGCGCGTTG+GGG | - | chr5.3:24868818-24868837 | None:intergenic | 50.0% | |
| AGCCGCGGCAAAACTTATGA+CGG | + | chr5.3:24868750-24868769 | MS.gene58584:CDS | 50.0% | |
| CAAATGCTTCTCCGTCACCA+TGG | - | chr5.3:24869256-24869275 | None:intergenic | 50.0% | |
| CAGCAAAGTTGCCTTCTCGA+AGG | + | chr5.3:24870385-24870404 | MS.gene58584:intron | 50.0% | |
| GAAATTTGAAGGTGGCGCGT+TGG | - | chr5.3:24868820-24868839 | None:intergenic | 50.0% | |
| GGTACAACCTCCATGAACTC+CGG | + | chr5.3:24868981-24869000 | MS.gene58584:CDS | 50.0% | |
| GTTAGGGTTTGTGTTCCCTC+TGG | - | chr5.3:24869080-24869099 | None:intergenic | 50.0% | |
| TAAGGCCTCGTCGAAGTCAT+CGG | - | chr5.3:24868844-24868863 | None:intergenic | 50.0% | |
| TACATCGTCAAGCCACGTTG+TGG | + | chr5.3:24868939-24868958 | MS.gene58584:CDS | 50.0% | |
| TATTGGAACGGCTGGTGTAC+TGG | - | chr5.3:24870181-24870200 | None:intergenic | 50.0% | |
| TTTCACCGATGACTTCGACG+AGG | + | chr5.3:24868836-24868855 | MS.gene58584:CDS | 50.0% | |
| ! | GAAGCATTTGACGGAGTCCT+TGG | + | chr5.3:24869266-24869285 | MS.gene58584:CDS | 50.0% |
| ! | GCGTTGGTAGAATTCCATGG+TGG | - | chr5.3:24868687-24868706 | None:intergenic | 50.0% |
| ! | GGACAACTACTGCTACTTCG+AGG | + | chr5.3:24869573-24869592 | MS.gene58584:CDS | 50.0% |
| ! | GGTGCGTTGGTAGAATTCCA+TGG | - | chr5.3:24868690-24868709 | None:intergenic | 50.0% |
| ! | TATAGTGGGGACCATGGTGA+CGG | + | chr5.3:24869242-24869261 | MS.gene58584:CDS | 50.0% |
| !! | GGGTTTTATAGTGGGGACCA+TGG | + | chr5.3:24869236-24869255 | MS.gene58584:CDS | 50.0% |
| !! | GGTGACGGAGAAGCATTTGA+CGG | + | chr5.3:24869257-24869276 | MS.gene58584:CDS | 50.0% |
| ATAAGAGACGCCTAGCGCAG+CGG | + | chr5.3:24870272-24870291 | MS.gene58584:intron | 55.0% | |
| CGAGTTCACCGGTGATGTTG+AGG | - | chr5.3:24868902-24868921 | None:intergenic | 55.0% | |
| CGTTGCATCGTCGAGTTCAC+CGG | - | chr5.3:24868913-24868932 | None:intergenic | 55.0% | |
| CGTTGGGGATATAGCCGAAG+TGG | - | chr5.3:24868803-24868822 | None:intergenic | 55.0% | |
| CTGGAGCAACTCCAATCTCC+TGG | - | chr5.3:24871159-24871178 | None:intergenic | 55.0% | |
| ! | CTTTTGGTAGGTTCGGACGG+CGG | - | chr5.3:24868871-24868890 | None:intergenic | 55.0% |
| ! | GCGTCGTCGAGGTTTTCACT+AGG | - | chr5.3:24869116-24869135 | None:intergenic | 55.0% |
| CTTGTTTCGTGGCGTCGTCG+AGG | - | chr5.3:24869127-24869146 | None:intergenic | 60.0% | |
| TAGCGCAGCGGCAAGCAACA+TGG | + | chr5.3:24870284-24870303 | MS.gene58584:intron | 60.0% | |
| ! | ATGTTGCTTGCCGCTGCGCT+AGG | - | chr5.3:24870285-24870304 | None:intergenic | 60.0% |
| ! | GGTTCGGACGGCGGATTCTA+AGG | - | chr5.3:24868862-24868881 | None:intergenic | 60.0% |
| TGTGTTCCCTCTGGCCAGCG+TGG | - | chr5.3:24869071-24869090 | None:intergenic | 65.0% | |
| TTGTACCCATCCCACGCGCC+TGG | - | chr5.3:24868714-24868733 | None:intergenic | 65.0% | |
| ! | AACTTCACCGGCTGCAGCCG+CGG | + | chr5.3:24868735-24868754 | MS.gene58584:CDS | 65.0% |
| ! | AGTTTTGCCGCGGCTGCAGC+CGG | - | chr5.3:24868745-24868764 | None:intergenic | 65.0% |
| CAACGCACCACCAGGCGCGT+GGG | + | chr5.3:24868701-24868720 | MS.gene58584:CDS | 70.0% | |
| CACCACCAGGCGCGTGGGAT+GGG | + | chr5.3:24868706-24868725 | MS.gene58584:CDS | 70.0% | |
| TACCCATCCCACGCGCCTGG+TGG | - | chr5.3:24868711-24868730 | None:intergenic | 70.0% | |
| TTCCCTCTGGCCAGCGTGGC+TGG | - | chr5.3:24869067-24869086 | None:intergenic | 70.0% | |
| CCAACGCACCACCAGGCGCG+TGG | + | chr5.3:24868700-24868719 | MS.gene58584:CDS | 75.0% | |
| CTCTGGCCAGCGTGGCTGGC+CGG | - | chr5.3:24869063-24869082 | None:intergenic | 75.0% | |
| GCACCACCAGGCGCGTGGGA+TGG | + | chr5.3:24868705-24868724 | MS.gene58584:CDS | 75.0% | |
| GGCCAGCCACGCTGGCCAGA+GGG | + | chr5.3:24869062-24869081 | MS.gene58584:CDS | 75.0% | |
| TCTTCCCCGGCCAGCCACGC+TGG | + | chr5.3:24869054-24869073 | MS.gene58584:CDS | 75.0% | |
| ! | CCACGCGCCTGGTGGTGCGT+TGG | - | chr5.3:24868703-24868722 | None:intergenic | 75.0% |
| ! | TCTGGCCAGCGTGGCTGGCC+GGG | - | chr5.3:24869062-24869081 | None:intergenic | 75.0% |
| ! | CGGCCAGCCACGCTGGCCAG+AGG | + | chr5.3:24869061-24869080 | MS.gene58584:CDS | 80.0% |
| !! | CTGGCCAGCGTGGCTGGCCG+GGG | - | chr5.3:24869061-24869080 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 24868681 | 24871219 | 24868681 | ID=MS.gene58584 |
| chr5.3 | mRNA | 24868681 | 24871219 | 24868681 | ID=MS.gene58584.t1;Parent=MS.gene58584 |
| chr5.3 | exon | 24868681 | 24869628 | 24868681 | ID=MS.gene58584.t1.exon1;Parent=MS.gene58584.t1 |
| chr5.3 | CDS | 24868681 | 24869628 | 24868681 | ID=cds.MS.gene58584.t1;Parent=MS.gene58584.t1 |
| chr5.3 | exon | 24871160 | 24871219 | 24871160 | ID=MS.gene58584.t1.exon2;Parent=MS.gene58584.t1 |
| chr5.3 | CDS | 24871160 | 24871219 | 24871160 | ID=cds.MS.gene58584.t1;Parent=MS.gene58584.t1 |
| Gene Sequence |
| Protein sequence |
