Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58930.t1 | XP_003609619.1 | 99.6 | 452 | 2 | 0 | 1 | 452 | 1 | 452 | 3.30E-265 | 924.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58930.t1 | Q9FEE2 | 89.1 | 450 | 48 | 1 | 3 | 452 | 6 | 454 | 2.1e-236 | 820.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58930.t1 | G7JK96 | 99.6 | 452 | 2 | 0 | 1 | 452 | 1 | 452 | 2.4e-265 | 924.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene58930 | 0.813258 | 2.80E-51 | -1.69E-46 |
| MS.gene049711 | MS.gene58930 | 0.832164 | 1.10E-55 | -1.69E-46 |
| MS.gene049744 | MS.gene58930 | 0.801102 | 1.06E-48 | -1.69E-46 |
| MS.gene049807 | MS.gene58930 | 0.811117 | 8.22E-51 | -1.69E-46 |
| MS.gene050257 | MS.gene58930 | 0.84208 | 3.22E-58 | -1.69E-46 |
| MS.gene050258 | MS.gene58930 | 0.854807 | 9.62E-62 | -1.69E-46 |
| MS.gene051744 | MS.gene58930 | 0.822603 | 2.17E-53 | -1.69E-46 |
| MS.gene052307 | MS.gene58930 | 0.813078 | 3.07E-51 | -1.69E-46 |
| MS.gene052533 | MS.gene58930 | 0.820293 | 7.40E-53 | -1.69E-46 |
| MS.gene052609 | MS.gene58930 | 0.838772 | 2.36E-57 | -1.69E-46 |
| MS.gene053143 | MS.gene58930 | 0.819422 | 1.17E-52 | -1.69E-46 |
| MS.gene054142 | MS.gene58930 | 0.8025 | 5.45E-49 | -1.69E-46 |
| MS.gene054178 | MS.gene58930 | 0.821614 | 3.68E-53 | -1.69E-46 |
| MS.gene055386 | MS.gene58930 | 0.812757 | 3.61E-51 | -1.69E-46 |
| MS.gene055513 | MS.gene58930 | 0.811542 | 6.64E-51 | -1.69E-46 |
| MS.gene056308 | MS.gene58930 | 0.81297 | 3.24E-51 | -1.69E-46 |
| MS.gene056507 | MS.gene58930 | 0.806544 | 7.81E-50 | -1.69E-46 |
| MS.gene056519 | MS.gene58930 | 0.819372 | 1.20E-52 | -1.69E-46 |
| MS.gene056699 | MS.gene58930 | 0.811071 | 8.41E-51 | -1.69E-46 |
| MS.gene05686 | MS.gene58930 | 0.820451 | 6.81E-53 | -1.69E-46 |
| MS.gene057102 | MS.gene58930 | 0.829834 | 4.12E-55 | -1.69E-46 |
| MS.gene057329 | MS.gene58930 | 0.843039 | 1.79E-58 | -1.69E-46 |
| MS.gene058649 | MS.gene58930 | 0.808501 | 3.00E-50 | -1.69E-46 |
| MS.gene058668 | MS.gene58930 | 0.816587 | 5.12E-52 | -1.69E-46 |
| MS.gene05894 | MS.gene58930 | 0.806551 | 7.79E-50 | -1.69E-46 |
| MS.gene059634 | MS.gene58930 | 0.821274 | 4.40E-53 | -1.69E-46 |
| MS.gene059778 | MS.gene58930 | 0.844796 | 6.06E-59 | -1.69E-46 |
| MS.gene05985 | MS.gene58930 | -0.811236 | 7.74E-51 | -1.69E-46 |
| MS.gene060933 | MS.gene58930 | 0.814503 | 1.49E-51 | -1.69E-46 |
| MS.gene060962 | MS.gene58930 | 0.809245 | 2.08E-50 | -1.69E-46 |
| MS.gene061100 | MS.gene58930 | 0.822002 | 2.99E-53 | -1.69E-46 |
| MS.gene061160 | MS.gene58930 | 0.802214 | 6.24E-49 | -1.69E-46 |
| MS.gene061188 | MS.gene58930 | 0.828378 | 9.30E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58930.t1 | MTR_4g119230 | 99.558 | 452 | 2 | 0 | 1 | 452 | 1 | 452 | 0.0 | 946 |
| MS.gene58930.t1 | MTR_4g119230 | 99.413 | 341 | 2 | 0 | 112 | 452 | 1 | 341 | 0.0 | 719 |
| MS.gene58930.t1 | MTR_4g119220 | 95.130 | 308 | 14 | 1 | 475 | 781 | 124 | 431 | 0.0 | 578 |
| MS.gene58930.t1 | MTR_1g075800 | 25.243 | 309 | 216 | 7 | 150 | 452 | 177 | 476 | 3.77e-18 | 89.0 |
| MS.gene58930.t1 | MTR_1g075800 | 25.243 | 309 | 216 | 7 | 150 | 452 | 148 | 447 | 3.88e-18 | 89.0 |
| MS.gene58930.t1 | MTR_1g080030 | 25.243 | 309 | 215 | 8 | 150 | 452 | 176 | 474 | 1.01e-16 | 84.7 |
| MS.gene58930.t1 | MTR_7g116150 | 26.794 | 209 | 144 | 4 | 245 | 452 | 261 | 461 | 4.98e-14 | 75.9 |
| MS.gene58930.t1 | MTR_7g080117 | 24.107 | 336 | 206 | 9 | 447 | 747 | 39 | 360 | 2.36e-13 | 73.9 |
| MS.gene58930.t1 | MTR_7g080117 | 24.107 | 336 | 206 | 9 | 447 | 747 | 39 | 360 | 3.09e-13 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58930.t1 | AT5G18580 | 89.111 | 450 | 48 | 1 | 3 | 452 | 6 | 454 | 0.0 | 840 |
| MS.gene58930.t1 | AT4G20960 | 51.274 | 314 | 132 | 4 | 475 | 778 | 124 | 426 | 1.72e-97 | 309 |
| MS.gene58930.t1 | AT5G28850 | 24.839 | 310 | 216 | 8 | 150 | 452 | 173 | 472 | 9.15e-18 | 87.8 |
| MS.gene58930.t1 | AT5G28900 | 24.516 | 310 | 217 | 8 | 150 | 452 | 173 | 472 | 1.78e-17 | 87.0 |
| MS.gene58930.t1 | AT1G54450 | 24.675 | 308 | 219 | 6 | 150 | 452 | 173 | 472 | 4.13e-17 | 85.9 |
| MS.gene58930.t1 | AT5G44090 | 27.311 | 238 | 159 | 6 | 218 | 452 | 249 | 475 | 6.41e-17 | 85.1 |
| MS.gene58930.t1 | AT5G44090 | 28.814 | 236 | 158 | 6 | 218 | 452 | 284 | 510 | 9.43e-17 | 84.7 |
| MS.gene58930.t1 | AT3G47390 | 26.736 | 288 | 179 | 8 | 476 | 744 | 84 | 358 | 1.48e-16 | 84.3 |
| MS.gene58930.t1 | AT3G47390 | 26.736 | 288 | 179 | 8 | 476 | 744 | 84 | 358 | 1.85e-16 | 84.0 |
| MS.gene58930.t1 | AT1G03960 | 26.271 | 236 | 164 | 4 | 218 | 452 | 39 | 265 | 2.79e-16 | 81.3 |
| MS.gene58930.t1 | AT5G28850 | 25.893 | 224 | 157 | 4 | 230 | 452 | 45 | 260 | 3.07e-16 | 81.3 |
| MS.gene58930.t1 | AT1G03960 | 26.271 | 236 | 164 | 4 | 218 | 452 | 100 | 326 | 4.58e-16 | 81.6 |
| MS.gene58930.t1 | AT1G03960 | 26.271 | 236 | 164 | 4 | 218 | 452 | 100 | 326 | 4.58e-16 | 81.6 |
| MS.gene58930.t1 | AT1G03960 | 26.271 | 236 | 164 | 4 | 218 | 452 | 100 | 326 | 4.58e-16 | 81.6 |
| MS.gene58930.t1 | AT1G03960 | 25.143 | 350 | 232 | 13 | 116 | 452 | 134 | 466 | 5.06e-16 | 82.4 |
| MS.gene58930.t1 | AT1G03960 | 25.301 | 332 | 224 | 11 | 132 | 452 | 148 | 466 | 6.07e-16 | 82.0 |
| MS.gene58930.t1 | AT1G03960 | 26.891 | 238 | 160 | 6 | 218 | 452 | 178 | 404 | 7.30e-16 | 81.6 |
Find 173 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGAAATGTATTAAATTTA+AGG | 0.146417 | 8.3:-7671757 | None:intergenic |
| TGCCACCATCAATCCATTTA+TGG | 0.164869 | 8.3:-7671494 | None:intergenic |
| AACAAATATGTCAAGCCTTC+TGG | 0.172392 | 8.3:-7671031 | None:intergenic |
| ATTCCTTGTTGAGCTTCTTC+TGG | 0.220389 | 8.3:-7676100 | None:intergenic |
| TTAGAGCCTTGTAATCATTT+TGG | 0.243470 | 8.3:+7673388 | MS.gene58930:CDS |
| ACAGAGACGTACACCATAAA+TGG | 0.257192 | 8.3:+7671481 | MS.gene58930:intron |
| ACATGCCTTCTTGTAGAAAC+TGG | 0.282567 | 8.3:-7665977 | None:intergenic |
| AGGAATTGAAATTGTATCTA+TGG | 0.284535 | 8.3:+7676117 | MS.gene58930:CDS |
| TGACTGATTGATCCCTCTTC+AGG | 0.291840 | 8.3:-7666508 | None:intergenic |
| TTGGAGGCTACAATGGGATT+TGG | 0.305793 | 8.3:-7673481 | None:intergenic |
| TTACAACATTTGAGAATTCT+AGG | 0.308577 | 8.3:-7671779 | None:intergenic |
| CATCAAAGCCAAAATTAAAA+AGG | 0.311973 | 8.3:+7673438 | MS.gene58930:CDS |
| TACAGTACCGCCTTGTTTGC+AGG | 0.318298 | 8.3:-7671610 | None:intergenic |
| AAGATGTACGGGATGAAATC+TGG | 0.319681 | 8.3:+7671535 | MS.gene58930:CDS |
| CTAAAGAATCGTCGGCATTT+AGG | 0.331185 | 8.3:-7667798 | None:intergenic |
| TCTCGGATCCGAAGCTTTGA+TGG | 0.336437 | 8.3:+7665784 | MS.gene58930:CDS |
| GAGTTTCTTGGACTTTAATC+TGG | 0.338671 | 8.3:+7670988 | MS.gene58930:CDS |
| TCTGAGAGATGCTGGTGATT+TGG | 0.339799 | 8.3:+7673339 | MS.gene58930:CDS |
| CGCATCACGTAAAGGTAAAA+TGG | 0.341167 | 8.3:-7667876 | None:intergenic |
| TCAAACTTCATAAAGTTAGA+AGG | 0.342405 | 8.3:-7667822 | None:intergenic |
| CTTGGCACAATTACGTACTA+TGG | 0.343771 | 8.3:+7668881 | MS.gene58930:CDS |
| ACAAATATGTCAAGCCTTCT+GGG | 0.348319 | 8.3:-7671030 | None:intergenic |
| TATAATATGAATAGGTTGAT+TGG | 0.350393 | 8.3:-7675978 | None:intergenic |
| TTTGTTGAATGCCGATGATT+TGG | 0.354002 | 8.3:+7666668 | MS.gene58930:CDS |
| ATCGGATCCGGTGCCGGTCT+CGG | 0.355652 | 8.3:+7665767 | MS.gene58930:CDS |
| AATAAATCTGGATGTGATCT+TGG | 0.364059 | 8.3:+7676144 | MS.gene58930:CDS |
| TTGTGCATTATAATATGAAT+AGG | 0.364266 | 8.3:-7675986 | None:intergenic |
| TTCTGTTAACGGTAATTTGT+TGG | 0.367730 | 8.3:+7675817 | MS.gene58930:CDS |
| ATCTATGGATCAAATAAATC+TGG | 0.375725 | 8.3:+7676132 | MS.gene58930:CDS |
| AGGTATTCTCTTTCTGTTAA+CGG | 0.379594 | 8.3:+7675806 | MS.gene58930:intron |
| ACGGGATGAAATCTGGGATA+TGG | 0.389280 | 8.3:+7671542 | MS.gene58930:CDS |
| TCTCAATCTATCCACTCCTT+TGG | 0.391934 | 8.3:-7673500 | None:intergenic |
| GCTGCTGAGTAATTGTCTTC+AGG | 0.399176 | 8.3:+7669871 | MS.gene58930:CDS |
| TTTCGTTGCCTTGATCTTCA+AGG | 0.399828 | 8.3:+7671052 | MS.gene58930:CDS |
| AACGATACTTGGCCAATCTC+TGG | 0.409291 | 8.3:-7666537 | None:intergenic |
| GAAGTTTGAGAAGGATGAGC+AGG | 0.413563 | 8.3:+7667836 | MS.gene58930:CDS |
| CCCTGCATCCTCCATGCTGT+GGG | 0.419674 | 8.3:+7665724 | MS.gene58930:CDS |
| AACTTTGTATTGAAGATGTA+CGG | 0.423478 | 8.3:+7671523 | MS.gene58930:CDS |
| GATCACATTGGCTGATCTAC+TGG | 0.423557 | 8.3:+7671587 | MS.gene58930:CDS |
| AATTCCCTCTCACATCTAAC+AGG | 0.424466 | 8.3:-7676198 | None:intergenic |
| GGTAATTTGTTGGACTCACT+TGG | 0.426398 | 8.3:+7675827 | MS.gene58930:CDS |
| TAATTGTCTTCAGGAACTAA+TGG | 0.427270 | 8.3:+7669880 | MS.gene58930:CDS |
| ACCCACAGCATGGAGGATGC+AGG | 0.431811 | 8.3:-7665725 | None:intergenic |
| CTGGGTTTGAGGAGCGTCAT+GGG | 0.441576 | 8.3:-7665690 | None:intergenic |
| TGCCTTGATCTTCAAGGGAG+GGG | 0.443199 | 8.3:+7671058 | MS.gene58930:CDS |
| CCTTGATCTAAGTTCTTCAA+TGG | 0.445210 | 8.3:-7676334 | None:intergenic |
| CGCAATCTCCGTCGTTTCAT+CGG | 0.447105 | 8.3:+7665749 | MS.gene58930:CDS |
| CAGTCAGAGAGTCCAGAGAT+TGG | 0.451193 | 8.3:+7666525 | MS.gene58930:CDS |
| GAAAGCCTCTGCTTACTTTG+AGG | 0.452605 | 8.3:+7673608 | MS.gene58930:CDS |
| ACACAGAACAGGCTGAAAAC+TGG | 0.454575 | 8.3:+7670280 | MS.gene58930:CDS |
| CACTCCTTTGGAGGCTACAA+TGG | 0.456190 | 8.3:-7673488 | None:intergenic |
| CCCCTGCATCCTCCATGCTG+TGG | 0.459542 | 8.3:+7665723 | MS.gene58930:CDS |
| AAGTTTGAGAAGGATGAGCA+GGG | 0.462952 | 8.3:+7667837 | MS.gene58930:CDS |
| AGAAGTCACAGACACAGAAC+AGG | 0.463244 | 8.3:+7670269 | MS.gene58930:CDS |
| ACCAACAACAACTTCAATTC+CGG | 0.463265 | 8.3:-7673527 | None:intergenic |
| GGAACTAATGGAGCTTCATC+AGG | 0.467348 | 8.3:+7669892 | MS.gene58930:CDS |
| CAATCTATCCACTCCTTTGG+AGG | 0.468894 | 8.3:-7673497 | None:intergenic |
| TTAGTACATCCATTCCAAAC+TGG | 0.470212 | 8.3:-7676295 | None:intergenic |
| CGTTTCATCGGATCCGGTGC+CGG | 0.473905 | 8.3:+7665761 | MS.gene58930:CDS |
| TCTGTATGTACAGAACAAAT+AGG | 0.473976 | 8.3:+7667774 | MS.gene58930:CDS |
| TTGGATTATTGTAATCATCA+AGG | 0.474418 | 8.3:+7676163 | MS.gene58930:CDS |
| CTCCGTCGTTTCATCGGATC+CGG | 0.475832 | 8.3:+7665755 | MS.gene58930:CDS |
| TCTGGGTTTGAGGAGCGTCA+TGG | 0.475855 | 8.3:-7665691 | None:intergenic |
| AGCTCAAAGTGTTGTAATTG+AGG | 0.478141 | 8.3:+7676390 | MS.gene58930:CDS |
| TTCGGATCCGAGACCGGCAC+CGG | 0.480160 | 8.3:-7665774 | None:intergenic |
| TATATTCATCACATGGTGGC+TGG | 0.484423 | 8.3:+7673586 | MS.gene58930:CDS |
| TGAATATGAAGAGCTTGTTA+AGG | 0.485615 | 8.3:+7676225 | MS.gene58930:CDS |
| ACTCCTTTGGAGGCTACAAT+GGG | 0.493090 | 8.3:-7673487 | None:intergenic |
| AAAGGTTGTTGTTGGGATGG+TGG | 0.495475 | 8.3:+7673456 | MS.gene58930:CDS |
| TTGCCTTGATCTTCAAGGGA+GGG | 0.497256 | 8.3:+7671057 | MS.gene58930:CDS |
| AGTACGTAATTGTGCCAAGT+TGG | 0.498410 | 8.3:-7668877 | None:intergenic |
| TTGTTGGACTCACTTGGGAA+TGG | 0.499209 | 8.3:+7675833 | MS.gene58930:CDS |
| GTACACCATAAATGGATTGA+TGG | 0.499781 | 8.3:+7671489 | MS.gene58930:CDS |
| AACACTTTGAGCTGAGGCCA+TGG | 0.501951 | 8.3:-7676380 | None:intergenic |
| TGATGCTACTGGTGCAGAAA+AGG | 0.502959 | 8.3:+7666731 | MS.gene58930:CDS |
| TTCGTTGCCTTGATCTTCAA+GGG | 0.506827 | 8.3:+7671053 | MS.gene58930:CDS |
| AGTGAATATCTGCTGTAGTA+AGG | 0.507664 | 8.3:-7671084 | None:intergenic |
| CCCACAGCATGGAGGATGCA+GGG | 0.507937 | 8.3:-7665724 | None:intergenic |
| CAGAAGAAAAGCGCTGAAGC+TGG | 0.509459 | 8.3:+7665946 | MS.gene58930:CDS |
| CTTAGATCAAGGAGTAAAAG+TGG | 0.511014 | 8.3:+7676345 | MS.gene58930:CDS |
| GCTCAAAGTGTTGTAATTGA+GGG | 0.511304 | 8.3:+7676391 | MS.gene58930:CDS |
| CTCGGATCCGAAGCTTTGAT+GGG | 0.511430 | 8.3:+7665785 | MS.gene58930:CDS |
| GATCTACTGGCCTGCAAACA+AGG | 0.516991 | 8.3:+7671600 | MS.gene58930:CDS |
| GTACGTAATTGTGCCAAGTT+GGG | 0.518298 | 8.3:-7668876 | None:intergenic |
| CAAAGCTTCGGATCCGAGAC+CGG | 0.518896 | 8.3:-7665780 | None:intergenic |
| TGAATAGGTTGATTGGCTCC+AGG | 0.520958 | 8.3:-7675971 | None:intergenic |
| TAACTTTATGAAGTTTGAGA+AGG | 0.521882 | 8.3:+7667827 | MS.gene58930:CDS |
| AATTCCCAGTTTCTACAAGA+AGG | 0.521965 | 8.3:+7665972 | MS.gene58930:CDS |
| GCCGGAATTGAAGTTGTTGT+TGG | 0.525178 | 8.3:+7673526 | MS.gene58930:CDS |
| TCATCCAAACCTCGTCTATG+AGG | 0.526337 | 8.3:-7668966 | None:intergenic |
| TGGTGGAAAGACAAGGGAGA+TGG | 0.526463 | 8.3:+7670958 | MS.gene58930:CDS |
| ACTCTGGTGGATACTATTCT+CGG | 0.526882 | 8.3:+7675864 | MS.gene58930:CDS |
| AGAGTTGTGGTGGAAAGACA+AGG | 0.529670 | 8.3:+7670951 | MS.gene58930:CDS |
| GTGGATAGATTGAGAGATGC+CGG | 0.531235 | 8.3:+7673508 | MS.gene58930:CDS |
| CATGCCTTCTTGTAGAAACT+GGG | 0.536301 | 8.3:-7665976 | None:intergenic |
| GTAAAGGTAAAATGGTAGAA+TGG | 0.536646 | 8.3:-7667868 | None:intergenic |
| TTCTTCAAATCAAATTCCAT+CGG | 0.538341 | 8.3:+7676018 | MS.gene58930:CDS |
| ATACGAACCCATCAAAGCTT+CGG | 0.541549 | 8.3:-7665792 | None:intergenic |
| CTACCGTGCGCATCACGTAA+AGG | 0.541937 | 8.3:-7667884 | None:intergenic |
| AACCCCTCCCTTGAAGATCA+AGG | 0.541976 | 8.3:-7671060 | None:intergenic |
| AGAATTTGTGAGCAGCAATA+CGG | 0.543992 | 8.3:-7668929 | None:intergenic |
| TTGATGAGAGCTTCAGTGCA+AGG | 0.544800 | 8.3:-7673421 | None:intergenic |
| AGTGGAAAATTTACGTCCCA+TGG | 0.545450 | 8.3:+7676363 | MS.gene58930:CDS |
| GTGATCTTGAGGTCATCTGC+TGG | 0.549058 | 8.3:-7671570 | None:intergenic |
| AGATGTACGGGATGAAATCT+GGG | 0.554056 | 8.3:+7671536 | MS.gene58930:CDS |
| TATGAAGAGCTTGTTAAGGA+AGG | 0.556680 | 8.3:+7676229 | MS.gene58930:CDS |
| AAGTTCTTCAATGGCAGTAG+AGG | 0.556844 | 8.3:-7676325 | None:intergenic |
| ACTTCTGCCCGACGTGTATG+TGG | 0.559250 | 8.3:+7670312 | MS.gene58930:CDS |
| CAATTACGTACTATGGATGC+AGG | 0.560142 | 8.3:+7668888 | MS.gene58930:CDS |
| CCACAGCATGGAGGATGCAG+GGG | 0.560303 | 8.3:-7665723 | None:intergenic |
| GTCCTACCAAAATGATTACA+AGG | 0.570312 | 8.3:-7673394 | None:intergenic |
| ATACCCACCACATACACGTC+GGG | 0.570402 | 8.3:-7670319 | None:intergenic |
| CCATTGAAGAACTTAGATCA+AGG | 0.572598 | 8.3:+7676334 | MS.gene58930:CDS |
| CACAGCATGGAGGATGCAGG+GGG | 0.579017 | 8.3:-7665722 | None:intergenic |
| GAGCTGCGAGAATATGCAGA+TGG | 0.579437 | 8.3:+7670631 | MS.gene58930:CDS |
| GTAATTTGTTGGACTCACTT+GGG | 0.582790 | 8.3:+7675828 | MS.gene58930:CDS |
| CGATGATTTGGATGCAATGT+GGG | 0.583046 | 8.3:+7666680 | MS.gene58930:CDS |
| ACGAGGTCTTATACCCAACT+TGG | 0.584602 | 8.3:+7668863 | MS.gene58930:CDS |
| GTACTCACATCTCAAGAACC+TGG | 0.585213 | 8.3:+7675953 | MS.gene58930:CDS |
| GGGAATGGAGTTACAGACTC+TGG | 0.586145 | 8.3:+7675848 | MS.gene58930:CDS |
| TAGAAGGACTAAAGAATCGT+CGG | 0.586744 | 8.3:-7667806 | None:intergenic |
| ACACTTTGAGCTGAGGCCAT+GGG | 0.587695 | 8.3:-7676379 | None:intergenic |
| CGCCGCGGAAAGAGTTGTGG+TGG | 0.589233 | 8.3:+7670941 | MS.gene58930:CDS |
| CCACATTGCATCCAAATCAT+CGG | 0.595437 | 8.3:-7666679 | None:intergenic |
| GTAACTTCATTGATGACCGA+TGG | 0.596622 | 8.3:-7676034 | None:intergenic |
| CGATGAAACGACGGAGATTG+CGG | 0.597769 | 8.3:-7665748 | None:intergenic |
| CTTCTTCTAGAAACCTGAAG+AGG | 0.597788 | 8.3:+7666495 | MS.gene58930:intron |
| GAGCTTGATGAGGATTCTGA+TGG | 0.600586 | 8.3:+7668130 | MS.gene58930:CDS |
| AATCCCATTGTAGCCTCCAA+AGG | 0.601448 | 8.3:+7673484 | MS.gene58930:CDS |
| GAGATTGCGGACCCACAGCA+TGG | 0.604791 | 8.3:-7665735 | None:intergenic |
| ACTTTGTATTGAAGATGTAC+GGG | 0.606242 | 8.3:+7671524 | MS.gene58930:CDS |
| GCTCTTGATAAAGATTCAAG+CGG | 0.606728 | 8.3:+7670592 | MS.gene58930:CDS |
| GCAGCAATACGGCAATACAT+TGG | 0.607459 | 8.3:-7668918 | None:intergenic |
| GTTGCCTTGATCTTCAAGGG+AGG | 0.607519 | 8.3:+7671056 | MS.gene58930:CDS |
| AGCTGCGAGAATATGCAGAT+GGG | 0.609717 | 8.3:+7670632 | MS.gene58930:CDS |
| TTCTTCTAGAAACCTGAAGA+GGG | 0.610376 | 8.3:+7666496 | MS.gene58930:intron |
| GAGTTGTGGTGGAAAGACAA+GGG | 0.614206 | 8.3:+7670952 | MS.gene58930:CDS |
| GTTCGCCGCGGAAAGAGTTG+TGG | 0.614666 | 8.3:+7670938 | MS.gene58930:CDS |
| GATCAGCCAATGTGATCTTG+AGG | 0.615588 | 8.3:-7671581 | None:intergenic |
| TTCCACCACAACTCTTTCCG+CGG | 0.622417 | 8.3:-7670943 | None:intergenic |
| CATTGTAGCCTCCAAAGGAG+TGG | 0.627423 | 8.3:+7673489 | MS.gene58930:CDS |
| CACCATAAATGGATTGATGG+TGG | 0.628066 | 8.3:+7671492 | MS.gene58930:CDS |
| AATTACCTCAAAGTAAGCAG+AGG | 0.629543 | 8.3:-7673613 | None:intergenic |
| CACCGGATCCGATGAAACGA+CGG | 0.631083 | 8.3:-7665757 | None:intergenic |
| TAATTCCACATACAATGACA+CGG | 0.637601 | 8.3:-7671803 | None:intergenic |
| CAAATATGTCAAGCCTTCTG+GGG | 0.638698 | 8.3:-7671029 | None:intergenic |
| AATTACAACACTTTGAGCTG+AGG | 0.639897 | 8.3:-7676386 | None:intergenic |
| GAAAACAAAGACACCCCAGA+AGG | 0.642493 | 8.3:+7671016 | MS.gene58930:CDS |
| AATGGAGTTACAGACTCTGG+TGG | 0.644448 | 8.3:+7675851 | MS.gene58930:CDS |
| TGATATGAGTGAGCTTGATG+AGG | 0.644452 | 8.3:+7668120 | MS.gene58930:CDS |
| TGTGTGATTGATGATGCTAC+TGG | 0.649443 | 8.3:+7666720 | MS.gene58930:CDS |
| TTACCTTTACGTGATGCGCA+CGG | 0.650553 | 8.3:+7667881 | MS.gene58930:CDS |
| AATTCCACATACAATGACAC+GGG | 0.655214 | 8.3:-7671802 | None:intergenic |
| TGAGGCATATATTCATCACA+TGG | 0.657070 | 8.3:+7673579 | MS.gene58930:CDS |
| ATGAGAGCTTCAGTGCAAGG+TGG | 0.669686 | 8.3:-7673418 | None:intergenic |
| AGATGACCTCAAGATCACAT+TGG | 0.674350 | 8.3:+7671575 | MS.gene58930:CDS |
| CCGATGATTTGGATGCAATG+TGG | 0.676057 | 8.3:+7666679 | MS.gene58930:CDS |
| CAACCGGCGATGTACAGCGA+CGG | 0.677187 | 8.3:+7665662 | None:intergenic |
| TATTTGTTCTGTACATACAG+AGG | 0.679593 | 8.3:-7667772 | None:intergenic |
| GATGAATATATGCCTCATTG+AGG | 0.680099 | 8.3:-7673573 | None:intergenic |
| CTGTACATACAGAGGCAATG+TGG | 0.681429 | 8.3:-7667764 | None:intergenic |
| AGTGTCCTGTTAGATGTGAG+AGG | 0.685168 | 8.3:+7676193 | MS.gene58930:CDS |
| ACTCCAGAAGAAGCTCAACA+AGG | 0.687391 | 8.3:+7676097 | MS.gene58930:CDS |
| GTGTCCTGTTAGATGTGAGA+GGG | 0.689300 | 8.3:+7676194 | MS.gene58930:CDS |
| ACAGCATGGAGGATGCAGGG+GGG | 0.693428 | 8.3:-7665721 | None:intergenic |
| GATACCCACCACATACACGT+CGG | 0.704023 | 8.3:-7670320 | None:intergenic |
| ATTGTGCAAGAGCCTCAATG+AGG | 0.710171 | 8.3:+7673561 | MS.gene58930:CDS |
| ATTGCGGACCCACAGCATGG+AGG | 0.723040 | 8.3:-7665732 | None:intergenic |
| GGCATATATTCATCACATGG+TGG | 0.726174 | 8.3:+7673582 | MS.gene58930:CDS |
| TTCGACGAACATGTTCGCCG+CGG | 0.749858 | 8.3:+7670926 | MS.gene58930:CDS |
| GAAATGGAAGCGTATATACG+AGG | 0.750462 | 8.3:+7668846 | MS.gene58930:CDS |
| ATGACGCTCCTCAAACCCAG+AGG | 0.752891 | 8.3:+7665693 | MS.gene58930:CDS |
| CTACTGGCCTGCAAACAAGG+CGG | 0.773319 | 8.3:+7671603 | MS.gene58930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 7665671 | 7676432 | 7665671 | ID=MS.gene58930 |
| chr8.3 | mRNA | 7665671 | 7676432 | 7665671 | ID=MS.gene58930.t1;Parent=MS.gene58930 |
| chr8.3 | exon | 7665671 | 7665806 | 7665671 | ID=MS.gene58930.t1.exon1;Parent=MS.gene58930.t1 |
| chr8.3 | CDS | 7665671 | 7665806 | 7665671 | ID=cds.MS.gene58930.t1;Parent=MS.gene58930.t1 |
| chr8.3 | exon | 7665902 | 7665993 | 7665902 | ID=MS.gene58930.t1.exon2;Parent=MS.gene58930.t1 |
| chr8.3 | CDS | 7665902 | 7665993 | 7665902 | ID=cds.MS.gene58930.t1;Parent=MS.gene58930.t1 |
| chr8.3 | exon | 7666505 | 7666567 | 7666505 | ID=MS.gene58930.t1.exon3;Parent=MS.gene58930.t1 |
| chr8.3 | CDS | 7666505 | 7666567 | 7666505 | ID=cds.MS.gene58930.t1;Parent=MS.gene58930.t1 |
| chr8.3 | exon | 7666654 | 7666752 | 7666654 | ID=MS.gene58930.t1.exon4;Parent=MS.gene58930.t1 |
| chr8.3 | CDS | 7666654 | 7666752 | 7666654 | ID=cds.MS.gene58930.t1;Parent=MS.gene58930.t1 |
| chr8.3 | exon | 7667744 | 7667902 | 7667744 | ID=MS.gene58930.t1.exon5;Parent=MS.gene58930.t1 |
| chr8.3 | CDS | 7667744 | 7667902 | 7667744 | ID=cds.MS.gene58930.t1;Parent=MS.gene58930.t1 |
| chr8.3 | exon | 7668097 | 7668168 | 7668097 | ID=MS.gene58930.t1.exon6;Parent=MS.gene58930.t1 |
| chr8.3 | CDS | 7668097 | 7668168 | 7668097 | ID=cds.MS.gene58930.t1;Parent=MS.gene58930.t1 |
| chr8.3 | exon | 7668846 | 7668978 | 7668846 | ID=MS.gene58930.t1.exon7;Parent=MS.gene58930.t1 |
| chr8.3 | CDS | 7668846 | 7668978 | 7668846 | ID=cds.MS.gene58930.t1;Parent=MS.gene58930.t1 |
| chr8.3 | exon | 7669849 | 7669913 | 7669849 | ID=MS.gene58930.t1.exon8;Parent=MS.gene58930.t1 |
| chr8.3 | CDS | 7669849 | 7669913 | 7669849 | ID=cds.MS.gene58930.t1;Parent=MS.gene58930.t1 |
| chr8.3 | exon | 7670258 | 7670333 | 7670258 | ID=MS.gene58930.t1.exon9;Parent=MS.gene58930.t1 |
| chr8.3 | CDS | 7670258 | 7670333 | 7670258 | ID=cds.MS.gene58930.t1;Parent=MS.gene58930.t1 |
| chr8.3 | exon | 7670581 | 7670682 | 7670581 | ID=MS.gene58930.t1.exon10;Parent=MS.gene58930.t1 |
| chr8.3 | CDS | 7670581 | 7670682 | 7670581 | ID=cds.MS.gene58930.t1;Parent=MS.gene58930.t1 |
| chr8.3 | exon | 7670924 | 7671116 | 7670924 | ID=MS.gene58930.t1.exon11;Parent=MS.gene58930.t1 |
| chr8.3 | CDS | 7670924 | 7671116 | 7670924 | ID=cds.MS.gene58930.t1;Parent=MS.gene58930.t1 |
| chr8.3 | exon | 7671485 | 7671650 | 7671485 | ID=MS.gene58930.t1.exon12;Parent=MS.gene58930.t1 |
| chr8.3 | CDS | 7671485 | 7671650 | 7671485 | ID=cds.MS.gene58930.t1;Parent=MS.gene58930.t1 |
| chr8.3 | exon | 7671747 | 7671812 | 7671747 | ID=MS.gene58930.t1.exon13;Parent=MS.gene58930.t1 |
| chr8.3 | CDS | 7671747 | 7671812 | 7671747 | ID=cds.MS.gene58930.t1;Parent=MS.gene58930.t1 |
| chr8.3 | exon | 7673331 | 7673629 | 7673331 | ID=MS.gene58930.t1.exon14;Parent=MS.gene58930.t1 |
| chr8.3 | CDS | 7673331 | 7673629 | 7673331 | ID=cds.MS.gene58930.t1;Parent=MS.gene58930.t1 |
| chr8.3 | exon | 7675808 | 7676432 | 7675808 | ID=MS.gene58930.t1.exon15;Parent=MS.gene58930.t1 |
| chr8.3 | CDS | 7675808 | 7676432 | 7675808 | ID=cds.MS.gene58930.t1;Parent=MS.gene58930.t1 |
| Gene Sequence |
| Protein sequence |
