Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59221.t1 | XP_003592098.1 | 90 | 40 | 4 | 0 | 211 | 250 | 165 | 204 | 2.20E-10 | 76.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59221.t1 | G7IBZ5 | 90.0 | 40 | 4 | 0 | 211 | 250 | 165 | 204 | 1.6e-10 | 76.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052077 | MS.gene59221 | 0.840911 | 6.54E-58 | -1.69E-46 |
| MS.gene052135 | MS.gene59221 | 0.807153 | 5.81E-50 | -1.69E-46 |
| MS.gene052188 | MS.gene59221 | 0.828018 | 1.13E-54 | -1.69E-46 |
| MS.gene052253 | MS.gene59221 | 0.800723 | 1.26E-48 | -1.69E-46 |
| MS.gene052340 | MS.gene59221 | 0.837334 | 5.53E-57 | -1.69E-46 |
| MS.gene053209 | MS.gene59221 | 0.814691 | 1.35E-51 | -1.69E-46 |
| MS.gene053836 | MS.gene59221 | 0.811978 | 5.34E-51 | -1.69E-46 |
| MS.gene054349 | MS.gene59221 | 0.840503 | 8.36E-58 | -1.69E-46 |
| MS.gene054930 | MS.gene59221 | 0.835938 | 1.25E-56 | -1.69E-46 |
| MS.gene055116 | MS.gene59221 | 0.841095 | 5.85E-58 | -1.69E-46 |
| MS.gene05553 | MS.gene59221 | 0.808787 | 2.61E-50 | -1.69E-46 |
| MS.gene056407 | MS.gene59221 | 0.800249 | 1.57E-48 | -1.69E-46 |
| MS.gene056659 | MS.gene59221 | 0.816984 | 4.17E-52 | -1.69E-46 |
| MS.gene056899 | MS.gene59221 | -0.800501 | 1.40E-48 | -1.69E-46 |
| MS.gene05702 | MS.gene59221 | 0.826664 | 2.40E-54 | -1.69E-46 |
| MS.gene057749 | MS.gene59221 | 0.824222 | 9.07E-54 | -1.69E-46 |
| MS.gene057823 | MS.gene59221 | 0.812434 | 4.25E-51 | -1.69E-46 |
| MS.gene058002 | MS.gene59221 | 0.805999 | 1.02E-49 | -1.69E-46 |
| MS.gene058710 | MS.gene59221 | 0.850929 | 1.24E-60 | -1.69E-46 |
| MS.gene058928 | MS.gene59221 | 0.811018 | 8.63E-51 | -1.69E-46 |
| MS.gene058949 | MS.gene59221 | 0.800956 | 1.13E-48 | -1.69E-46 |
| MS.gene059285 | MS.gene59221 | 0.873206 | 1.76E-67 | -1.69E-46 |
| MS.gene059420 | MS.gene59221 | 0.81182 | 5.78E-51 | -1.69E-46 |
| MS.gene059692 | MS.gene59221 | 0.805163 | 1.52E-49 | -1.69E-46 |
| MS.gene059695 | MS.gene59221 | 0.80225 | 6.13E-49 | -1.69E-46 |
| MS.gene059894 | MS.gene59221 | 0.806411 | 8.34E-50 | -1.69E-46 |
| MS.gene06037 | MS.gene59221 | 0.802984 | 4.33E-49 | -1.69E-46 |
| MS.gene060495 | MS.gene59221 | 0.804286 | 2.32E-49 | -1.69E-46 |
| MS.gene061049 | MS.gene59221 | 0.857511 | 1.55E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59221.t1 | MTR_1g098680 | 76.316 | 304 | 24 | 5 | 1 | 303 | 1 | 257 | 6.48e-63 | 199 |
| MS.gene59221.t1 | MTR_6g037220 | 70.330 | 91 | 27 | 0 | 212 | 302 | 20 | 110 | 8.99e-20 | 83.2 |
| MS.gene59221.t1 | MTR_0583s0010 | 68.132 | 91 | 26 | 1 | 212 | 302 | 20 | 107 | 9.97e-17 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 104 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAAGAAACACCATTTCTT+TGG | 0.265818 | 1.3:+67839923 | MS.gene59221:CDS |
| TTGTGCCTGTGAGCATTCTC+TGG | 0.272448 | 1.3:-67839791 | None:intergenic |
| GGCGGATATGGTGGTGGTTA+TGG | 0.297675 | 1.3:+67838487 | MS.gene59221:CDS |
| ACCACCACCGGTGGTGGTTT+TGG | 0.301983 | 1.3:-67838671 | None:intergenic |
| TCCGCCACCCGTGGTTGTTT+TGG | 0.307495 | 1.3:-67838470 | None:intergenic |
| ACAACCACGGGTGGCGGATA+TGG | 0.315139 | 1.3:+67838475 | MS.gene59221:CDS |
| GGCGGCTACGGCGGTGGTTA+TGG | 0.318700 | 1.3:+67838388 | MS.gene59221:CDS |
| GGCGGCTACGGTGGTGGTTA+TGG | 0.321562 | 1.3:+67838586 | MS.gene59221:CDS |
| GCCGCCACCAGTGGTTGTTT+TGG | 0.330964 | 1.3:-67838371 | None:intergenic |
| GGCGGCTACGGTGGTGGATA+TGG | 0.331422 | 1.3:+67838637 | MS.gene59221:CDS |
| GGTGGCTACGGTGGTGGTTA+TGG | 0.331534 | 1.3:+67838436 | MS.gene59221:CDS |
| CATGAGCATCTTGGTGAGTT+AGG | 0.335349 | 1.3:+67838754 | MS.gene59221:CDS |
| GGCGGCTACGGTGGTGGTTA+TGG | 0.343719 | 1.3:+67838535 | MS.gene59221:CDS |
| ACAGGTGATGACTATGATTC+TGG | 0.353087 | 1.3:+67838190 | MS.gene59221:CDS |
| ACCACCACCGGTGGTGGTTA+TGG | 0.357161 | 1.3:+67838676 | MS.gene59221:CDS |
| GTAGCCACCACCAGTGGTTT+TGG | 0.366481 | 1.3:-67838422 | None:intergenic |
| GAGGAAGAAGAAGAAGTTCA+TGG | 0.387151 | 1.3:+67839899 | MS.gene59221:CDS |
| TCATATGGTAATGACAATTC+TGG | 0.390159 | 1.3:+67838274 | MS.gene59221:CDS |
| GAGTTAGGTGCTGCAGCTGC+TGG | 0.393240 | 1.3:+67838769 | MS.gene59221:CDS |
| GAAGCAGCTGCAGTGGGATC+TGG | 0.415672 | 1.3:+67839833 | MS.gene59221:CDS |
| CCTTTGTCTCATGATGCTCA+TGG | 0.427452 | 1.3:-67839868 | None:intergenic |
| TACTCTAATAATGAAACATC+TGG | 0.429220 | 1.3:+67838337 | MS.gene59221:CDS |
| GGTTACAATAAAACATCATA+TGG | 0.436340 | 1.3:+67838259 | MS.gene59221:CDS |
| TCTGGTGGTGACTATGAAAC+TGG | 0.450209 | 1.3:+67838292 | MS.gene59221:CDS |
| TAACCACTGTCAGTGTCTAT+AGG | 0.455188 | 1.3:-67838148 | None:intergenic |
| ACTGGTGGCGGCTACGGCGG+TGG | 0.456265 | 1.3:+67838382 | MS.gene59221:CDS |
| ACAACCACTGGTGGCGGCTA+CGG | 0.469364 | 1.3:+67838376 | MS.gene59221:CDS |
| ACTGGTGGCGGCTACGGTGG+TGG | 0.471209 | 1.3:+67838580 | MS.gene59221:CDS |
| ACTGGAGGCGGCTACGGTGG+TGG | 0.471438 | 1.3:+67838631 | MS.gene59221:CDS |
| ACCACTGGCGGCTACGGTGG+TGG | 0.476187 | 1.3:+67838529 | MS.gene59221:CDS |
| CATATGTTCAGCCAAAGAAA+TGG | 0.483204 | 1.3:-67839934 | None:intergenic |
| ACAACCACTGGTGGCGGCTA+CGG | 0.484339 | 1.3:+67838574 | MS.gene59221:CDS |
| TACAATGATGACCAGCCATC+TGG | 0.494200 | 1.3:+67838232 | MS.gene59221:CDS |
| ACCAAAACAACCACGGGTGG+CGG | 0.495591 | 1.3:+67838469 | MS.gene59221:CDS |
| AGTTGCAGAAGCAGCTGCAG+TGG | 0.498157 | 1.3:+67839826 | MS.gene59221:CDS |
| ACCAAAACCACCACCGGTGG+TGG | 0.498197 | 1.3:+67838670 | MS.gene59221:CDS |
| GCCAAAACAACCACTGGTGG+CGG | 0.500275 | 1.3:+67838370 | MS.gene59221:CDS |
| AAAACAACCACTGGCGGCTA+CGG | 0.502509 | 1.3:+67838523 | MS.gene59221:CDS |
| ACTGGTGGTGGCTACGGTGG+TGG | 0.506091 | 1.3:+67838430 | MS.gene59221:CDS |
| TGTGCCTGTGAGCATTCTCT+GGG | 0.507199 | 1.3:-67839790 | None:intergenic |
| CACAGCAAACATGAGCATCT+TGG | 0.507345 | 1.3:+67838745 | MS.gene59221:CDS |
| CATCATCATGCTTCTTGTGA+TGG | 0.509136 | 1.3:-67838114 | None:intergenic |
| AACAAAACATCATACTCTAC+AGG | 0.515763 | 1.3:+67838172 | MS.gene59221:CDS |
| ACCATAACCACCACCGGTGG+TGG | 0.516051 | 1.3:-67838677 | None:intergenic |
| ACAACCACTGGAGGCGGCTA+CGG | 0.519220 | 1.3:+67838625 | MS.gene59221:CDS |
| GACACCAAAACCACTGGTGG+TGG | 0.521255 | 1.3:+67838418 | MS.gene59221:CDS |
| ACCACGGGTGGCGGATATGG+TGG | 0.535025 | 1.3:+67838478 | MS.gene59221:CDS |
| AAAACCACTGGTGGTGGCTA+CGG | 0.535946 | 1.3:+67838424 | MS.gene59221:CDS |
| GCAGCTGCAGTGGGATCTGG+TGG | 0.536922 | 1.3:+67839836 | MS.gene59221:CDS |
| AATGAAACATCTGGTGGCTA+TGG | 0.540775 | 1.3:+67838346 | MS.gene59221:CDS |
| ACTAAAACAACCACTGGTGG+CGG | 0.542116 | 1.3:+67838568 | MS.gene59221:CDS |
| ACCACTGGTGGCGGCTACGG+TGG | 0.543033 | 1.3:+67838577 | MS.gene59221:CDS |
| GATGGAAGAGGCCACGGCTA+CGG | 0.545278 | 1.3:-67838096 | None:intergenic |
| GACTCTGACACCAAAACCAC+TGG | 0.545560 | 1.3:+67838412 | MS.gene59221:CDS |
| GTTGCAGAAGCAGCTGCAGT+GGG | 0.546096 | 1.3:+67839827 | MS.gene59221:CDS |
| ACCACTGGTGGCGGCTACGG+CGG | 0.552249 | 1.3:+67838379 | MS.gene59221:CDS |
| ACGGGTGGCGGATATGGTGG+TGG | 0.554084 | 1.3:+67838481 | MS.gene59221:CDS |
| TGTAACCACCACCAGATGGC+TGG | 0.555821 | 1.3:-67838243 | None:intergenic |
| AGCATGATGATGATGATAGT+AGG | 0.556478 | 1.3:+67838125 | MS.gene59221:CDS |
| ACTAAAACAACCACTGGAGG+CGG | 0.561518 | 1.3:+67838619 | MS.gene59221:CDS |
| ACCACTGGAGGCGGCTACGG+TGG | 0.561554 | 1.3:+67838628 | MS.gene59221:CDS |
| CATGCTTCTTGTGATGGAAG+AGG | 0.565809 | 1.3:-67838108 | None:intergenic |
| ACAACCACTGGCGGCTACGG+TGG | 0.567166 | 1.3:+67838526 | MS.gene59221:CDS |
| TCTGACACTAAAACAACCAC+TGG | 0.570147 | 1.3:+67838613 | MS.gene59221:CDS |
| TGATGATGTTGATTATAAGA+AGG | 0.572766 | 1.3:+67838711 | MS.gene59221:CDS |
| ACCACTGGTGGTGGCTACGG+TGG | 0.575768 | 1.3:+67838427 | MS.gene59221:CDS |
| ACCACCGTAGCCGCCTCCAG+TGG | 0.576587 | 1.3:-67838629 | None:intergenic |
| TTAGGTGCTGCAGCTGCTGG+TGG | 0.580522 | 1.3:+67838772 | MS.gene59221:CDS |
| TGTCTCATGATGCTCATGGA+AGG | 0.581145 | 1.3:-67839864 | None:intergenic |
| TCTGACACTAAAACAACCAC+TGG | 0.581882 | 1.3:+67838514 | MS.gene59221:CDS |
| TCTGACACTAAAACAACCAC+TGG | 0.583853 | 1.3:+67838562 | MS.gene59221:CDS |
| TGAGACAAAGGAAACAAAAG+AGG | 0.584271 | 1.3:+67839880 | MS.gene59221:CDS |
| TCTGACACCAAAACAACCAC+GGG | 0.584515 | 1.3:+67838463 | MS.gene59221:CDS |
| TCTGACACCAAAACCACCAC+CGG | 0.597416 | 1.3:+67838664 | MS.gene59221:CDS |
| GACACTAAAACAACCACTGG+TGG | 0.602888 | 1.3:+67838565 | MS.gene59221:CDS |
| ACCACCATATCCGCCACCCG+TGG | 0.603586 | 1.3:-67838479 | None:intergenic |
| CAGCTGCAGTGGGATCTGGT+GGG | 0.605425 | 1.3:+67839837 | MS.gene59221:CDS |
| TCTTGTGATGGAAGAGGCCA+CGG | 0.606734 | 1.3:-67838102 | None:intergenic |
| GACACTAAAACAACCACTGG+CGG | 0.607430 | 1.3:+67838517 | MS.gene59221:CDS |
| ATCGTCACCATAACCACCAC+CGG | 0.607906 | 1.3:-67838683 | None:intergenic |
| TGATGTTGATTATAAGAAGG+AGG | 0.610955 | 1.3:+67838714 | MS.gene59221:CDS |
| TATGGTGCCAAAACAACCAC+TGG | 0.612429 | 1.3:+67838364 | MS.gene59221:CDS |
| CCATGAGCATCATGAGACAA+AGG | 0.614111 | 1.3:+67839868 | MS.gene59221:CDS |
| TCTAATAATGAAACATCTGG+TGG | 0.616695 | 1.3:+67838340 | MS.gene59221:CDS |
| CTCTGACACCAAAACAACCA+CGG | 0.619600 | 1.3:+67838462 | MS.gene59221:CDS |
| ACCACCGTAGCCGCCACCAG+TGG | 0.622033 | 1.3:-67838578 | None:intergenic |
| TTATTGTAACCACCACCAGA+TGG | 0.622037 | 1.3:-67838247 | None:intergenic |
| ACCACCACCGTAGCCGCCAG+TGG | 0.623805 | 1.3:-67838530 | None:intergenic |
| ACGGTTCTCTTCATCAGACA+TGG | 0.625188 | 1.3:-67838077 | None:intergenic |
| GACACTAAAACAACCACTGG+AGG | 0.626777 | 1.3:+67838616 | MS.gene59221:CDS |
| ACCGCCGTAGCCGCCACCAG+TGG | 0.626903 | 1.3:-67838380 | None:intergenic |
| GATGACCAGCCATCTGGTGG+TGG | 0.627887 | 1.3:+67838238 | MS.gene59221:CDS |
| GACACCAAAACAACCACGGG+TGG | 0.630084 | 1.3:+67838466 | MS.gene59221:CDS |
| CAAGATGCTCATGTTTGCTG+TGG | 0.630178 | 1.3:-67838744 | None:intergenic |
| GACACCAAAACCACCACCGG+TGG | 0.634543 | 1.3:+67838667 | MS.gene59221:CDS |
| GATGAAGAGAACCGTAGCCG+TGG | 0.635065 | 1.3:+67838085 | MS.gene59221:CDS |
| ACCACCGTAGCCACCACCAG+TGG | 0.645976 | 1.3:-67838428 | None:intergenic |
| AAGACCCAGAGAATGCTCAC+AGG | 0.646034 | 1.3:+67839786 | MS.gene59221:CDS |
| TCTGACACCAAAACCACTGG+TGG | 0.658393 | 1.3:+67838415 | MS.gene59221:CDS |
| GGTGCCAAAACAACCACTGG+TGG | 0.667985 | 1.3:+67838367 | MS.gene59221:CDS |
| GTCACCATAACCACCACCGG+TGG | 0.707664 | 1.3:-67838680 | None:intergenic |
| AATGATGACCAGCCATCTGG+TGG | 0.714048 | 1.3:+67838235 | MS.gene59221:CDS |
| TATGGTAATGACAATTCTGG+TGG | 0.722206 | 1.3:+67838277 | MS.gene59221:CDS |
| AGGCCTATAGACACTGACAG+TGG | 0.729201 | 1.3:+67838145 | MS.gene59221:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATATAAAAAAAAATA+AGG | - | chr1.3:67839172-67839191 | None:intergenic | 0.0% |
| !!! | TATTTTTATTTTTATTTTTT+TGG | + | chr1.3:67839514-67839533 | MS.gene59221:intron | 0.0% |
| !! | AAAAAATTAATTACAAAGTT+TGG | - | chr1.3:67839471-67839490 | None:intergenic | 10.0% |
| !! | AATGTAATGTTTAAATACTA+CGG | - | chr1.3:67839371-67839390 | None:intergenic | 15.0% |
| !! | AGAAACAAATAACAAAAATA+TGG | - | chr1.3:67838854-67838873 | None:intergenic | 15.0% |
| !! | GAAACAAATAACAAAAATAT+GGG | - | chr1.3:67838853-67838872 | None:intergenic | 15.0% |
| !!! | AATTATTCAAATGTTTTGTA+AGG | - | chr1.3:67838954-67838973 | None:intergenic | 15.0% |
| !!! | TACTTACAAATTTTCAATTT+TGG | - | chr1.3:67839705-67839724 | None:intergenic | 15.0% |
| !!! | AATCAATAAATTTTCTCTGA+TGG | + | chr1.3:67838904-67838923 | MS.gene59221:intron | 20.0% |
| !!! | TTAATGCAATTTTCCTATTA+TGG | - | chr1.3:67839416-67839435 | None:intergenic | 20.0% |
| ! | AAATAAAATACGCAAGAACT+TGG | - | chr1.3:67839559-67839578 | None:intergenic | 25.0% |
| ! | AATAAAATACGCAAGAACTT+GGG | - | chr1.3:67839558-67839577 | None:intergenic | 25.0% |
| ! | GACTCATATTCATTAATTAG+TGG | + | chr1.3:67839286-67839305 | MS.gene59221:intron | 25.0% |
| ! | GGTTACAATAAAACATCATA+TGG | + | chr1.3:67838259-67838278 | MS.gene59221:CDS | 25.0% |
| ! | TAAATAGCAATTAGGAGTAA+TGG | - | chr1.3:67838824-67838843 | None:intergenic | 25.0% |
| ! | TACTCTAATAATGAAACATC+TGG | + | chr1.3:67838337-67838356 | MS.gene59221:CDS | 25.0% |
| ! | TGTAAAAATTCGATCTTGAT+TGG | + | chr1.3:67839586-67839605 | MS.gene59221:intron | 25.0% |
| ! | TTACGCTATAAATAGACATA+GGG | + | chr1.3:67839656-67839675 | MS.gene59221:intron | 25.0% |
| ! | TTCCTATTATGGAAATCTTA+GGG | - | chr1.3:67839405-67839424 | None:intergenic | 25.0% |
| ! | TTTCCTATTATGGAAATCTT+AGG | - | chr1.3:67839406-67839425 | None:intergenic | 25.0% |
| !! | TGATGATGTTGATTATAAGA+AGG | + | chr1.3:67838711-67838730 | MS.gene59221:CDS | 25.0% |
| !!! | ATTTTTTTGGTACAAGAAGA+GGG | + | chr1.3:67839527-67839546 | MS.gene59221:intron | 25.0% |
| !!! | TATTTTTTTGGTACAAGAAG+AGG | + | chr1.3:67839526-67839545 | MS.gene59221:intron | 25.0% |
| AACAAAACATCATACTCTAC+AGG | + | chr1.3:67838172-67838191 | MS.gene59221:CDS | 30.0% | |
| AACATCCAACCAAATATGAA+CGG | - | chr1.3:67839613-67839632 | None:intergenic | 30.0% | |
| AAGAAGAAACACCATTTCTT+TGG | + | chr1.3:67839923-67839942 | MS.gene59221:CDS | 30.0% | |
| GGAGAGATTAAATAGCAATT+AGG | - | chr1.3:67838832-67838851 | None:intergenic | 30.0% | |
| GTTACGCTATAAATAGACAT+AGG | + | chr1.3:67839655-67839674 | MS.gene59221:intron | 30.0% | |
| TCTAATAATGAAACATCTGG+TGG | + | chr1.3:67838340-67838359 | MS.gene59221:CDS | 30.0% | |
| ! | TCATATGGTAATGACAATTC+TGG | + | chr1.3:67838274-67838293 | MS.gene59221:CDS | 30.0% |
| ! | TGATGTTGATTATAAGAAGG+AGG | + | chr1.3:67838714-67838733 | MS.gene59221:CDS | 30.0% |
| ! | TTCACTAGATGTTAGTTTAG+TGG | - | chr1.3:67839079-67839098 | None:intergenic | 30.0% |
| AATGATTCTCTCAAACATCG+TGG | - | chr1.3:67839330-67839349 | None:intergenic | 35.0% | |
| ATATTTGGTTGGATGTTGGT+AGG | + | chr1.3:67839616-67839635 | MS.gene59221:intron | 35.0% | |
| GTTCATATTTGGTTGGATGT+TGG | + | chr1.3:67839612-67839631 | MS.gene59221:intron | 35.0% | |
| TGAGACAAAGGAAACAAAAG+AGG | + | chr1.3:67839880-67839899 | MS.gene59221:CDS | 35.0% | |
| TGTAATCTCCAACAACAAAG+TGG | - | chr1.3:67839439-67839458 | None:intergenic | 35.0% | |
| TTGATTGGACCGTTCATATT+TGG | + | chr1.3:67839601-67839620 | MS.gene59221:intron | 35.0% | |
| ! | AGCATGATGATGATGATAGT+AGG | + | chr1.3:67838125-67838144 | MS.gene59221:CDS | 35.0% |
| ! | TATGGTAATGACAATTCTGG+TGG | + | chr1.3:67838277-67838296 | MS.gene59221:CDS | 35.0% |
| ! | TGCATTAACCACTTTGTTGT+TGG | + | chr1.3:67839428-67839447 | MS.gene59221:intron | 35.0% |
| AATGAAACATCTGGTGGCTA+TGG | + | chr1.3:67838346-67838365 | MS.gene59221:CDS | 40.0% | |
| ACAGGTGATGACTATGATTC+TGG | + | chr1.3:67838190-67838209 | MS.gene59221:CDS | 40.0% | |
| CATCATCATGCTTCTTGTGA+TGG | - | chr1.3:67838117-67838136 | None:intergenic | 40.0% | |
| CGCCCTAAGATTTCCATAAT+AGG | + | chr1.3:67839400-67839419 | MS.gene59221:intron | 40.0% | |
| GAGGAAGAAGAAGAAGTTCA+TGG | + | chr1.3:67839899-67839918 | MS.gene59221:CDS | 40.0% | |
| GAGTCATGCTCAACAAGATT+AGG | - | chr1.3:67839271-67839290 | None:intergenic | 40.0% | |
| TAACCACTGTCAGTGTCTAT+AGG | - | chr1.3:67838151-67838170 | None:intergenic | 40.0% | |
| TCTGACACTAAAACAACCAC+TGG | + | chr1.3:67838514-67838533 | MS.gene59221:CDS | 40.0% | |
| TTATTGTAACCACCACCAGA+TGG | - | chr1.3:67838250-67838269 | None:intergenic | 40.0% | |
| TTGGACCGTTCATATTTGGT+TGG | + | chr1.3:67839605-67839624 | MS.gene59221:intron | 40.0% | |
| AAACATCGTGGAACGACTCA+AGG | - | chr1.3:67839318-67839337 | None:intergenic | 45.0% | |
| ACTAAAACAACCACTGGAGG+CGG | + | chr1.3:67838619-67838638 | MS.gene59221:CDS | 45.0% | |
| ACTAAAACAACCACTGGTGG+CGG | + | chr1.3:67838568-67838587 | MS.gene59221:CDS | 45.0% | |
| CACAGCAAACATGAGCATCT+TGG | + | chr1.3:67838745-67838764 | MS.gene59221:CDS | 45.0% | |
| CATGAGCATCTTGGTGAGTT+AGG | + | chr1.3:67838754-67838773 | MS.gene59221:CDS | 45.0% | |
| CCATGAGCATCATGAGACAA+AGG | + | chr1.3:67839868-67839887 | MS.gene59221:CDS | 45.0% | |
| CCTTTGTCTCATGATGCTCA+TGG | - | chr1.3:67839871-67839890 | None:intergenic | 45.0% | |
| CTCTGACACCAAAACAACCA+CGG | + | chr1.3:67838462-67838481 | MS.gene59221:CDS | 45.0% | |
| GACACTAAAACAACCACTGG+AGG | + | chr1.3:67838517-67838536 | MS.gene59221:CDS | 45.0% | |
| GACACTAAAACAACCACTGG+CGG | + | chr1.3:67838517-67838536 | MS.gene59221:CDS | 45.0% | |
| GACACTAAAACAACCACTGG+TGG | + | chr1.3:67838517-67838536 | MS.gene59221:CDS | 45.0% | |
| TACAATGATGACCAGCCATC+TGG | + | chr1.3:67838232-67838251 | MS.gene59221:CDS | 45.0% | |
| TCTGACACCAAAACAACCAC+GGG | + | chr1.3:67838463-67838482 | MS.gene59221:CDS | 45.0% | |
| TGTCTCATGATGCTCATGGA+AGG | - | chr1.3:67839867-67839886 | None:intergenic | 45.0% | |
| ! | CAAGATGCTCATGTTTGCTG+TGG | - | chr1.3:67838747-67838766 | None:intergenic | 45.0% |
| ! | CATGCTTCTTGTGATGGAAG+AGG | - | chr1.3:67838111-67838130 | None:intergenic | 45.0% |
| ! | TATGGTGCCAAAACAACCAC+TGG | + | chr1.3:67838364-67838383 | MS.gene59221:CDS | 45.0% |
| ! | TCTGGTGGTGACTATGAAAC+TGG | + | chr1.3:67838292-67838311 | MS.gene59221:CDS | 45.0% |
| !! | TTAAAAATAAATTTGTAAAA+TGG | - | chr1.3:67839145-67839164 | None:intergenic | 5.0% |
| AAAACAACCACTGGCGGCTA+CGG | + | chr1.3:67838523-67838542 | MS.gene59221:CDS | 50.0% | |
| AAGACCCAGAGAATGCTCAC+AGG | + | chr1.3:67839786-67839805 | MS.gene59221:CDS | 50.0% | |
| AATGATGACCAGCCATCTGG+TGG | + | chr1.3:67838235-67838254 | MS.gene59221:CDS | 50.0% | |
| AGGCCTATAGACACTGACAG+TGG | + | chr1.3:67838145-67838164 | MS.gene59221:CDS | 50.0% | |
| ATCGTCACCATAACCACCAC+CGG | - | chr1.3:67838686-67838705 | None:intergenic | 50.0% | |
| GACTCTGACACCAAAACCAC+TGG | + | chr1.3:67838412-67838431 | MS.gene59221:CDS | 50.0% | |
| TCTGACACCAAAACCACCAC+CGG | + | chr1.3:67838664-67838683 | MS.gene59221:CDS | 50.0% | |
| TCTGACACCAAAACCACTGG+TGG | + | chr1.3:67838415-67838434 | MS.gene59221:CDS | 50.0% | |
| TGTGCCTGTGAGCATTCTCT+GGG | - | chr1.3:67839793-67839812 | None:intergenic | 50.0% | |
| TTGTGCCTGTGAGCATTCTC+TGG | - | chr1.3:67839794-67839813 | None:intergenic | 50.0% | |
| ! | TCTTGTGATGGAAGAGGCCA+CGG | - | chr1.3:67838105-67838124 | None:intergenic | 50.0% |
| !! | AAAACCACTGGTGGTGGCTA+CGG | + | chr1.3:67838424-67838443 | MS.gene59221:CDS | 50.0% |
| !! | AGCTGCTGGTGGTTTTGCTT+TGG | + | chr1.3:67838783-67838802 | MS.gene59221:CDS | 50.0% |
| ACCAAAACAACCACGGGTGG+CGG | + | chr1.3:67838469-67838488 | MS.gene59221:CDS | 55.0% | |
| AGTTGCAGAAGCAGCTGCAG+TGG | + | chr1.3:67839826-67839845 | MS.gene59221:CDS | 55.0% | |
| GACACCAAAACAACCACGGG+TGG | + | chr1.3:67838466-67838485 | MS.gene59221:CDS | 55.0% | |
| GACACCAAAACCACTGGTGG+TGG | + | chr1.3:67838418-67838437 | MS.gene59221:CDS | 55.0% | |
| GATGAAGAGAACCGTAGCCG+TGG | + | chr1.3:67838085-67838104 | MS.gene59221:CDS | 55.0% | |
| GCCAAAACAACCACTGGTGG+CGG | + | chr1.3:67838370-67838389 | MS.gene59221:CDS | 55.0% | |
| GGTGCCAAAACAACCACTGG+TGG | + | chr1.3:67838367-67838386 | MS.gene59221:CDS | 55.0% | |
| GTTGCAGAAGCAGCTGCAGT+GGG | + | chr1.3:67839827-67839846 | MS.gene59221:CDS | 55.0% | |
| TGTAACCACCACCAGATGGC+TGG | - | chr1.3:67838246-67838265 | None:intergenic | 55.0% | |
| ! | GTAGCCACCACCAGTGGTTT+TGG | - | chr1.3:67838425-67838444 | None:intergenic | 55.0% |
| !! | GGCGGATATGGTGGTGGTTA+TGG | + | chr1.3:67838487-67838506 | MS.gene59221:CDS | 55.0% |
| ACAACCACTGGAGGCGGCTA+CGG | + | chr1.3:67838625-67838644 | MS.gene59221:CDS | 60.0% | |
| ACCAAAACCACCACCGGTGG+TGG | + | chr1.3:67838670-67838689 | MS.gene59221:CDS | 60.0% | |
| ACCATAACCACCACCGGTGG+TGG | - | chr1.3:67838680-67838699 | None:intergenic | 60.0% | |
| CAGCTGCAGTGGGATCTGGT+GGG | + | chr1.3:67839837-67839856 | MS.gene59221:CDS | 60.0% | |
| GAAGCAGCTGCAGTGGGATC+TGG | + | chr1.3:67839833-67839852 | MS.gene59221:CDS | 60.0% | |
| GACACCAAAACCACCACCGG+TGG | + | chr1.3:67838667-67838686 | MS.gene59221:CDS | 60.0% | |
| GATGACCAGCCATCTGGTGG+TGG | + | chr1.3:67838238-67838257 | MS.gene59221:CDS | 60.0% | |
| GATGGAAGAGGCCACGGCTA+CGG | - | chr1.3:67838099-67838118 | None:intergenic | 60.0% | |
| GTCACCATAACCACCACCGG+TGG | - | chr1.3:67838683-67838702 | None:intergenic | 60.0% | |
| ! | ACCACCACCGGTGGTGGTTA+TGG | + | chr1.3:67838676-67838695 | MS.gene59221:CDS | 60.0% |
| ! | GAGTTAGGTGCTGCAGCTGC+TGG | + | chr1.3:67838769-67838788 | MS.gene59221:CDS | 60.0% |
| ! | GCCGCCACCAGTGGTTGTTT+TGG | - | chr1.3:67838374-67838393 | None:intergenic | 60.0% |
| ! | GGTGGCTACGGTGGTGGTTA+TGG | + | chr1.3:67838436-67838455 | MS.gene59221:CDS | 60.0% |
| ! | TCCGCCACCCGTGGTTGTTT+TGG | - | chr1.3:67838473-67838492 | None:intergenic | 60.0% |
| ! | TTAGGTGCTGCAGCTGCTGG+TGG | + | chr1.3:67838772-67838791 | MS.gene59221:CDS | 60.0% |
| !! | ACAACCACGGGTGGCGGATA+TGG | + | chr1.3:67838475-67838494 | MS.gene59221:CDS | 60.0% |
| !! | ACAACCACTGGTGGCGGCTA+CGG | + | chr1.3:67838376-67838395 | MS.gene59221:CDS | 60.0% |
| !! | ACCACCACCGGTGGTGGTTT+TGG | - | chr1.3:67838674-67838693 | None:intergenic | 60.0% |
| ACAACCACTGGCGGCTACGG+TGG | + | chr1.3:67838526-67838545 | MS.gene59221:CDS | 65.0% | |
| ACCACCATATCCGCCACCCG+TGG | - | chr1.3:67838482-67838501 | None:intergenic | 65.0% | |
| ACCACCGTAGCCACCACCAG+TGG | - | chr1.3:67838431-67838450 | None:intergenic | 65.0% | |
| GCAGCTGCAGTGGGATCTGG+TGG | + | chr1.3:67839836-67839855 | MS.gene59221:CDS | 65.0% | |
| ! | GGCGGCTACGGTGGTGGTTA+TGG | + | chr1.3:67838535-67838554 | MS.gene59221:CDS | 65.0% |
| !! | ACCACGGGTGGCGGATATGG+TGG | + | chr1.3:67838478-67838497 | MS.gene59221:CDS | 65.0% |
| !! | ACCACTGGTGGTGGCTACGG+TGG | + | chr1.3:67838427-67838446 | MS.gene59221:CDS | 65.0% |
| !! | ACGGGTGGCGGATATGGTGG+TGG | + | chr1.3:67838481-67838500 | MS.gene59221:CDS | 65.0% |
| !! | ACTGGTGGTGGCTACGGTGG+TGG | + | chr1.3:67838430-67838449 | MS.gene59221:CDS | 65.0% |
| !! | GGCGGCTACGGTGGTGGATA+TGG | + | chr1.3:67838637-67838656 | MS.gene59221:CDS | 65.0% |
| ACCACCACCGTAGCCGCCAG+TGG | - | chr1.3:67838533-67838552 | None:intergenic | 70.0% | |
| ACCACCGTAGCCGCCACCAG+TGG | - | chr1.3:67838581-67838600 | None:intergenic | 70.0% | |
| ACCACCGTAGCCGCCTCCAG+TGG | - | chr1.3:67838632-67838651 | None:intergenic | 70.0% | |
| ACCACTGGAGGCGGCTACGG+TGG | + | chr1.3:67838628-67838647 | MS.gene59221:CDS | 70.0% | |
| ACCACTGGCGGCTACGGTGG+TGG | + | chr1.3:67838529-67838548 | MS.gene59221:CDS | 70.0% | |
| ACTGGAGGCGGCTACGGTGG+TGG | + | chr1.3:67838631-67838650 | MS.gene59221:CDS | 70.0% | |
| GGCGGCTACGGCGGTGGTTA+TGG | + | chr1.3:67838388-67838407 | MS.gene59221:CDS | 70.0% | |
| !! | ACCACTGGTGGCGGCTACGG+CGG | + | chr1.3:67838379-67838398 | MS.gene59221:CDS | 70.0% |
| !! | ACCACTGGTGGCGGCTACGG+TGG | + | chr1.3:67838379-67838398 | MS.gene59221:CDS | 70.0% |
| !! | ACTGGTGGCGGCTACGGTGG+TGG | + | chr1.3:67838580-67838599 | MS.gene59221:CDS | 70.0% |
| ACCGCCGTAGCCGCCACCAG+TGG | - | chr1.3:67838383-67838402 | None:intergenic | 75.0% | |
| !! | ACTGGTGGCGGCTACGGCGG+TGG | + | chr1.3:67838382-67838401 | MS.gene59221:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 67838079 | 67839949 | 67838079 | ID=MS.gene59221 |
| chr1.3 | mRNA | 67838079 | 67839949 | 67838079 | ID=MS.gene59221.t1;Parent=MS.gene59221 |
| chr1.3 | exon | 67838079 | 67838804 | 67838079 | ID=MS.gene59221.t1.exon1;Parent=MS.gene59221.t1 |
| chr1.3 | CDS | 67838079 | 67838804 | 67838079 | ID=cds.MS.gene59221.t1;Parent=MS.gene59221.t1 |
| chr1.3 | exon | 67839764 | 67839949 | 67839764 | ID=MS.gene59221.t1.exon2;Parent=MS.gene59221.t1 |
| chr1.3 | CDS | 67839764 | 67839949 | 67839764 | ID=cds.MS.gene59221.t1;Parent=MS.gene59221.t1 |
| Gene Sequence |
| Protein sequence |
