AlfalfaGEDB | MS.gene59295

M. sativa cultivar XinJiangDaYe / MS.gene59295

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59295.t1	XP_024641827.1	96.4	781	26	1	9	787	61	841	0.00E+00	1389.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59295.t1	A0A396HMI3	96.4	781	26	1	9	787	61	841	0.0e+00	1389.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049350	MS.gene59295	0.810136	1.34E-50	-1.69E-46
MS.gene049711	MS.gene59295	0.808115	3.63E-50	-1.69E-46
MS.gene050807	MS.gene59295	0.835008	2.15E-56	-1.69E-46
MS.gene050808	MS.gene59295	0.816495	5.37E-52	-1.69E-46
MS.gene050901	MS.gene59295	0.800249	1.57E-48	-1.69E-46
MS.gene051279	MS.gene59295	0.804706	1.90E-49	-1.69E-46
MS.gene05157	MS.gene59295	0.830667	2.58E-55	-1.69E-46
MS.gene051664	MS.gene59295	0.803787	2.95E-49	-1.69E-46
MS.gene051719	MS.gene59295	0.841295	5.18E-58	-1.69E-46
MS.gene051720	MS.gene59295	0.86561	5.21E-65	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59295.t1	AT1G12380	56.147	789	297	9	14	784	33	790	0.0	868
MS.gene59295.t1	AT1G62870	56.977	774	288	11	15	784	27	759	0.0	857

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Find 0 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTAGCTACTTGAAAAAACA+TGG	+	42850:3110-3129	MS.gene59295:intergenic	30.0%
ATTTGGAGAATCAAAACCAT+TGG	-	42850:3407-3426	MS.gene59295:CDS	30.0%
CATGTGGATTTAAGAGTAAT+TGG	-	42850:4370-4389	MS.gene59295:CDS	30.0%
GATTATTAAAGGAATGGTTC+AGG	-	42850:3837-3856	MS.gene59295:CDS	30.0%
GATTGTTGCTGATAAGTTTA+AGG	-	42850:3369-3388	MS.gene59295:CDS	30.0%
GTGTCTTTAATCAAGTAAAG+TGG	+	42850:4042-4061	MS.gene59295:intergenic	30.0%
TAATTATAGAATGCAGGAGA+TGG	-	42850:3579-3598	MS.gene59295:CDS	30.0%
TACTTCTTTGAGTAAAGAAC+AGG	-	42850:2874-2893	MS.gene59295:CDS	30.0%
TACTTGATTAAAGACACAAG+TGG	-	42850:4045-4064	MS.gene59295:CDS	30.0%
TCAAAATCATAACTTGGCAT+TGG	-	42850:2673-2692	MS.gene59295:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
42850	gene	2236	4599	2236	ID=MS.gene59295
42850	mRNA	2236	4599	2236	ID=MS.gene59295.t1;Parent=MS.gene59295
42850	exon	2236	4599	2236	ID=MS.gene59295.t1.exon1;Parent=MS.gene59295.t1
42850	CDS	2236	4599	2236	ID=cds.MS.gene59295.t1;Parent=MS.gene59295.t1

Gene Sequence

>MS.gene59295

ATGACTTCAACAAACTCCACTTCAACAGAACCACTTCCTAGTTCAGAAGAACTTGCTGTGAAAGCAGTTAACAAACGATACGAGGGTCTTGTCACTGTTCGAACCAAAGCTGTTAAAGGTAAAGGTGCATGGTATTGGACACACCTTGAACCTATTTTGGTTCGAAATCCTGATACTGGTCTCGCTAAATCTGTTAAACTCAAGTGTTGTTTGTGTGATTCTGTTTTTTCTGCTTCAAACCCTTCAAGAACAGCTTCAGAACATCTCAAACGTGGAACATGTTCTAATTTTAACAATTCTGGTTTGTTGTTAAAATCTGAACCCGGTTCAGTTCCGGTTTCACCGGTTCCTATTTCGTCGGTTTCCGGTTCGAACCGGAAAAGAGATCAAATGGGAGTTGCTGTTTCAGTTTCAACCTCACCATCATCATTAAGTTTTCAAAATCATAACTTGGCATTGGTTGAAATTGGCTACAATCAGGTGCATGGTAATATGGTGAACCATCAGAACCAGAACCAGAATCACCAGAATCAGAACCAGCATCATTTGATGTTGTCTGGTGGAAAAGATGATTTATGTGCATTGGCTATGTTTGAAGATAGTGTGAAGAAGTTGAAGAGTCCTAAGACTTCACCTGGTACTTCTTTGAGTAAAGAACAGGTGAATTCTGCTTTGGATTTACTTGCTGATTGGTTTTATGAATGTTGTGGTTCTGTTTCTTTGTCAACAATTGAGCATAGAAAGTTTCAAGCTTTTCTTTCTCAAGTTGGTTTGCCTGTAGGAAGTTGTTTGAGACGCGAGGTTTCCGGTCCAAGGCTCGATGCTAGGTTTAATGAAGTTAAGAGTGAATCCGAGGCGAAAATTAGGGATGCCATGTTTTTTCAAGTAGCTAGTGATGGTTGGAAGAGTTATGGTAATAGTAGTAGTAATTATAATAATGATAGGAGTTTGTATGGTTTGTGTTGTGGTGGTGAGAGTTTGGTTAAGTTTATGGTGAATCTACCAAATGGGAGTAGTGTTTTTGAAAAGGCGGTGTTTACCGGCGGGGGAGTGGTGAATTCGAAGTATGCTGAGGAGGTTTTGTGGGAGACTGTGACTGGTGTTAGTGGTAGTGTTGTTCAAAGATGTGTAGGGATTGTTGCTGATAAGTTTAAGGCTAAGGCATTGAGGAATTTGGAGAATCAAAACCATTGGATGGTAAATACTTCTTGTCAGCTTCAAGGGTTTGTTAGTTTAATCAAGGATTTTAACAACGAGCTCGAACTTTTCGGTATTGTTACTAAGAATTGTCTTAAAGTTGCAAATTTTATAGACAATGAATCTCAGGTGAGGAATGTTTTTGTTAATTATAGAATGCAGGAGATGGAGTATGGCGGGTTGATTCGTGTGCCTTCGCCGAAATGTGATCCGTTGAAGAACTTTGCGTCCGTGTTTCCGATGCTTGAGGATATTTTGAGCTGTGCTAGAGTGATTCAAATGGTTGTGATGGAGGACGCGTTTAAGGCAATGTTCATGGAGGATCCAAATGCTAGAGAAGTGGCTGGAATGGTTCAGAATGAGGTGTTTTGGAACGAGGTTGAAGCGGTTTATTCGCTTGTGAAGATTATTAAAGGAATGGTTCAGGATATAGAGGCGGAGAGGCCGTTGATAGGTCGATGTTTGCCTCTTTGGGAGGAGATGAGAACCAAAGTGAAGGAGTGGTGTAGTAAATACAATGTCGTCGAAGGACCAGTGGAGAAAATACTCGAAAAACGGTTTCGAAAAAACTACCACCCTGCATGGTCAGCGGCATTTATACTCGATCCACTTTACTTGATTAAAGACACAAGTGGAAAATATCTCCCGCCATTCAAGTTTCTGACACGCGAACAAGAGAAAGACGTCGATAAGTTACTTACAAGACTAGCTTCGAGAGAAGAAGCTCATGTCGTTTTGATGGAGCTAATGAAATGGAGATCAGAAGGACTCGACCCTCTTTATGCGCAAGCCGTTCAGATGAAACAAAGAGATCCAGTCACTGGTAAGATGAAAGTCGCAAATCCTCTTAGTAGTCGACTTGTTTGGGAAACATGTTTGTGTGAGTTTAAATCTTTAGGGAAGATAGCGGTGAGGCTCATTTTTCTTCATGCAACTTCATGTGGATTTAAGAGTAATTGGTCTTTCATGAGAAAAGTTTCTGGAAACAAAAACTCTAGAGTTGCATTGGAAAGAGCTCAGAAAATGATATACATTGCAGCTCATGCAAAGCTTGAAAGAAGAGATTTTTCTAGCGAGGAAGAAAAAGACGCAGAATTGTTTTCCATTTCTGGAAGTGACGAAGATAGCATGCTAGCTGAAGTCTATGCCGATGCAATGCAATCTTAA

Protein sequence

>MS.gene59295.t1

MTSTNSTSTEPLPSSEELAVKAVNKRYEGLVTVRTKAVKGKGAWYWTHLEPILVRNPDTGLAKSVKLKCCLCDSVFSASNPSRTASEHLKRGTCSNFNNSGLLLKSEPGSVPVSPVPISSVSGSNRKRDQMGVAVSVSTSPSSLSFQNHNLALVEIGYNQVHGNMVNHQNQNQNHQNQNQHHLMLSGGKDDLCALAMFEDSVKKLKSPKTSPGTSLSKEQVNSALDLLADWFYECCGSVSLSTIEHRKFQAFLSQVGLPVGSCLRREVSGPRLDARFNEVKSESEAKIRDAMFFQVASDGWKSYGNSSSNYNNDRSLYGLCCGGESLVKFMVNLPNGSSVFEKAVFTGGGVVNSKYAEEVLWETVTGVSGSVVQRCVGIVADKFKAKALRNLENQNHWMVNTSCQLQGFVSLIKDFNNELELFGIVTKNCLKVANFIDNESQVRNVFVNYRMQEMEYGGLIRVPSPKCDPLKNFASVFPMLEDILSCARVIQMVVMEDAFKAMFMEDPNAREVAGMVQNEVFWNEVEAVYSLVKIIKGMVQDIEAERPLIGRCLPLWEEMRTKVKEWCSKYNVVEGPVEKILEKRFRKNYHPAWSAAFILDPLYLIKDTSGKYLPPFKFLTREQEKDVDKLLTRLASREEAHVVLMELMKWRSEGLDPLYAQAVQMKQRDPVTGKMKVANPLSSRLVWETCLCEFKSLGKIAVRLIFLHATSCGFKSNWSFMRKVSGNKNSRVALERAQKMIYIAAHAKLERRDFSSEEEKDAELFSISGSDEDSMLAEVYADAMQS