AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene67485


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67485.t1 MTR_5g022730 98.710 155 2 0 1 155 1 155 1.03e-111 313
MS.gene67485.t1 MTR_5g022710 96.774 155 5 0 1 155 1 155 6.84e-110 309
MS.gene67485.t1 MTR_7g021400 86.364 154 21 0 2 155 3 156 4.75e-91 261
MS.gene67485.t1 MTR_7g094150 86.538 156 20 1 1 155 1 156 1.83e-89 257
MS.gene67485.t1 MTR_7g094170 84.416 154 24 0 2 155 3 156 4.50e-88 254
MS.gene67485.t1 MTR_4g032400 78.710 155 32 1 2 155 9 163 2.37e-85 247
MS.gene67485.t1 MTR_7g021380 82.468 154 27 0 2 155 3 156 4.70e-84 244
MS.gene67485.t1 MTR_4g032450 75.484 155 37 1 2 155 21 175 4.71e-84 244
MS.gene67485.t1 MTR_3g110048 76.282 156 35 1 2 155 3 158 4.76e-84 244
MS.gene67485.t1 MTR_7g094120 74.359 156 38 1 2 155 4 159 8.51e-83 241
MS.gene67485.t1 MTR_5g085030 72.903 155 41 1 1 154 1 155 1.45e-78 230
MS.gene67485.t1 MTR_8g056060 74.194 155 39 1 2 155 3 157 2.83e-78 229
MS.gene67485.t1 MTR_7g094280 72.152 158 41 2 1 155 1 158 5.71e-78 228
MS.gene67485.t1 MTR_8g468480 70.513 156 45 1 1 155 1 156 1.95e-77 227
MS.gene67485.t1 MTR_4g032460 73.077 156 35 2 1 155 1 150 8.58e-72 213
MS.gene67485.t1 MTR_4g032510 69.677 155 39 3 3 155 5 153 1.75e-71 212
MS.gene67485.t1 MTR_7g094310 68.987 158 36 3 1 155 1 148 2.42e-70 209
MS.gene67485.t1 MTR_4g032500 67.097 155 44 2 2 155 4 152 1.74e-69 207
MS.gene67485.t1 MTR_5g082340 67.308 156 39 2 1 155 1 145 1.73e-65 196
MS.gene67485.t1 MTR_4g033455 61.039 154 60 0 2 155 7 160 2.18e-65 197
MS.gene67485.t1 MTR_4g017860 54.872 195 45 3 4 155 26 220 1.87e-63 194
MS.gene67485.t1 MTR_1g099870 84.314 102 14 1 56 155 2 103 7.17e-59 178
MS.gene67485.t1 MTR_4g033460 60.714 140 55 0 2 141 7 146 8.95e-59 183
MS.gene67485.t1 MTR_4g033460 60.215 93 29 1 40 132 161 245 1.86e-30 110
MS.gene67485.t1 MTR_4g021390 59.091 154 60 1 2 155 5 155 1.67e-58 179
MS.gene67485.t1 MTR_8g089730 69.919 123 20 1 33 155 1 106 2.96e-50 156
MS.gene67485.t1 MTR_7g094320 55.414 157 28 2 1 155 1 117 4.05e-47 149
MS.gene67485.t1 MTR_4g032420 61.417 127 34 3 30 155 38 150 6.43e-47 149
MS.gene67485.t1 MTR_4g032470 51.370 146 27 2 11 155 32 134 1.19e-43 140
MS.gene67485.t1 MTR_7g006370 55.000 140 54 2 2 141 5 135 1.55e-43 140
MS.gene67485.t1 MTR_4g131980 65.000 120 36 3 1 118 1 116 1.18e-41 136
MS.gene67485.t1 MTR_4g127240 66.990 103 28 4 39 139 26 124 1.89e-40 132
MS.gene67485.t1 MTR_7g094410 53.247 154 30 4 2 113 3 156 3.34e-40 133
MS.gene67485.t1 MTR_7g094360 46.512 172 38 4 1 118 1 172 2.12e-38 129
MS.gene67485.t1 MTR_8g056090 49.351 154 45 6 2 153 3 125 8.07e-36 120
MS.gene67485.t1 MTR_4g119422 50.000 146 66 2 2 145 228 368 1.75e-35 126
MS.gene67485.t1 MTR_1g112590 39.355 155 78 2 7 145 1 155 1.63e-32 113
MS.gene67485.t1 MTR_7g071200 71.014 69 19 1 88 155 4 72 1.22e-28 100
MS.gene67485.t1 MTR_2g066010 41.722 151 76 5 7 154 20 161 2.99e-27 101
MS.gene67485.t1 MTR_4g032520 44.444 144 38 4 28 153 1 120 4.23e-27 99.0
MS.gene67485.t1 MTR_2g065720 41.060 151 77 5 7 154 37 178 3.84e-26 98.6
MS.gene67485.t1 MTR_5g096950 36.538 156 80 3 3 154 2 142 2.69e-23 89.7
MS.gene67485.t1 MTR_7g094350 48.598 107 33 2 2 108 3 87 2.74e-23 90.9
MS.gene67485.t1 MTR_7g094350 51.685 89 39 3 47 134 102 187 7.52e-20 82.0
MS.gene67485.t1 MTR_4g032540 65.079 63 21 1 89 150 70 132 4.53e-23 88.6
MS.gene67485.t1 MTR_2g018980 34.667 150 85 3 7 155 3 140 2.59e-22 87.0
MS.gene67485.t1 MTR_1g042510 35.256 156 63 4 7 145 1 135 4.45e-22 89.7
MS.gene67485.t1 MTR_1g112570 36.691 139 63 4 7 127 1 132 1.06e-20 85.9
MS.gene67485.t1 MTR_5g078680 32.051 156 68 3 7 145 1 135 2.08e-19 82.0
MS.gene67485.t1 MTR_6g053620 36.806 144 81 5 7 145 17 155 3.25e-19 82.8
MS.gene67485.t1 MTR_6g053620 36.806 144 81 5 7 145 17 155 3.69e-19 82.8
MS.gene67485.t1 MTR_8g007195 34.286 140 80 4 9 142 13 146 2.17e-18 80.1
MS.gene67485.t1 MTR_7g077810 34.722 144 84 4 7 145 18 156 7.62e-18 79.0
MS.gene67485.t1 MTR_8g007185 32.877 146 87 4 7 146 11 151 7.42e-17 75.9
MS.gene67485.t1 MTR_2g100830 33.793 145 80 5 9 145 13 149 7.90e-17 75.9
MS.gene67485.t1 MTR_2g100825 32.867 143 87 4 7 145 11 148 1.32e-16 75.1
MS.gene67485.t1 MTR_8g007205 32.877 146 87 4 7 146 11 151 1.33e-16 75.1
MS.gene67485.t1 MTR_7g036780 32.609 138 83 5 2 134 4 136 3.46e-15 70.5
MS.gene67485.t1 MTR_4g131910 39.286 112 58 2 4 111 133 238 1.23e-14 68.9
MS.gene67485.t1 MTR_8g030670 30.345 145 91 3 9 148 20 159 2.10e-14 69.3
MS.gene67485.t1 MTR_3g061700 33.684 95 56 2 52 145 1 89 1.85e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67485.t1 AT5G42190 76.608 171 24 1 1 155 1 171 7.00e-86 249
MS.gene67485.t1 AT1G75950 78.616 159 28 1 3 155 2 160 1.67e-83 243
MS.gene67485.t1 AT1G20140 73.006 163 36 3 1 155 1 163 2.22e-82 240
MS.gene67485.t1 AT2G25700 69.325 163 42 3 1 155 1 163 9.93e-78 228
MS.gene67485.t1 AT4G34210 70.779 154 41 2 3 155 2 152 9.14e-77 225
MS.gene67485.t1 AT4G34470 70.130 154 42 2 3 155 2 152 5.40e-76 223
MS.gene67485.t1 AT3G21860 67.742 155 44 3 3 155 2 152 2.03e-68 204
MS.gene67485.t1 AT3G21850 65.161 155 49 3 3 155 2 153 3.17e-67 201
MS.gene67485.t1 AT3G60010 64.331 157 47 3 4 155 2 154 2.04e-66 199
MS.gene67485.t1 AT2G03170 62.987 154 50 2 3 155 2 149 9.10e-64 192
MS.gene67485.t1 AT2G03190 56.024 166 60 3 3 155 2 167 2.63e-59 182
MS.gene67485.t1 AT3G60020 56.962 158 56 3 4 155 2 153 7.07e-57 175
MS.gene67485.t1 AT3G21830 57.143 154 62 2 3 155 2 152 3.27e-56 173
MS.gene67485.t1 AT2G03160 49.206 189 60 3 3 155 2 190 4.57e-56 174
MS.gene67485.t1 AT2G20160 55.556 153 62 2 3 154 2 149 8.86e-54 167
MS.gene67485.t1 AT3G25650 57.831 166 57 5 3 155 2 167 1.35e-53 167
MS.gene67485.t1 AT1G10230 57.419 155 63 2 3 154 2 156 2.13e-52 164
MS.gene67485.t1 AT3G21840 59.167 120 43 3 3 120 2 117 6.22e-38 126
MS.gene67485.t1 AT3G53060 66.279 86 22 3 28 112 1 80 7.63e-32 109
MS.gene67485.t1 AT3G61415 34.028 144 85 5 7 145 18 156 2.37e-16 74.7
MS.gene67485.t1 AT3G61415 33.333 144 86 4 7 145 18 156 2.47e-16 74.7
MS.gene67485.t1 AT2G45950 31.944 144 88 4 7 145 18 156 3.31e-16 74.3
MS.gene67485.t1 AT2G45950 31.944 144 88 4 7 145 18 156 3.31e-16 74.3
MS.gene67485.t1 AT2G45950 31.944 144 88 4 7 145 18 156 3.89e-16 74.3
MS.gene67485.t1 AT2G45950 31.944 144 88 4 7 145 18 156 3.89e-16 74.3
MS.gene67485.t1 AT2G45950 31.944 144 88 4 7 145 18 156 3.89e-16 74.3

Find 36 sgRNAs with CRISPR-Local

Find 89 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACGTTACGAGCAAGATCT+TGG 0.349619 5.3:+13208655 MS.gene67485:CDS
CTTGAATATCAAGAGCTTGC+TGG 0.389953 5.3:+13209708 MS.gene67485:CDS
CGAGGATGAGCTTAAGTCTT+GGG 0.409245 5.3:+13208739 MS.gene67485:CDS
AAGATCTTGCTCGTAACGTT+GGG 0.435888 5.3:-13208653 None:intergenic
CGAGTTCGTGAAGGTTGATC+AGG 0.440775 5.3:+13208766 MS.gene67485:CDS
GGTTGATGAAGCTGTTGCTT+TGG 0.442319 5.3:+13208571 MS.gene67485:CDS
AATGTCTTGCGGATCTCCTC+TGG 0.448832 5.3:-13209775 None:intergenic
GACTTAAGCTCATCCTCGTT+AGG 0.455978 5.3:-13208734 None:intergenic
TGATCATGTCTGCAACAGTC+TGG 0.461006 5.3:-13209741 None:intergenic
TGATTTCTCTCCAGAGGAAG+AGG 0.475889 5.3:+13209810 MS.gene67485:CDS
CGAACTTCCTCCTCTTCCTC+TGG 0.494352 5.3:-13209820 None:intergenic
CATGTCTGCAACAGTCTGGC+AGG 0.496105 5.3:-13209737 None:intergenic
CAAGATCTTGCTCGTAACGT+TGG 0.499561 5.3:-13208654 None:intergenic
TGCTCGTAACGTTGGGAAGA+GGG 0.510548 5.3:-13208646 None:intergenic
GACTGTTGCAGACATGATCA+AGG 0.534990 5.3:+13209744 MS.gene67485:CDS
TTGCTCGTAACGTTGGGAAG+AGG 0.535258 5.3:-13208647 None:intergenic
AACCTCGAAGGTCTCGCCAT+CGG 0.535779 5.3:-13208552 None:intergenic
GGAAGAGGAGGAAGTTCGTA+GGG 0.537389 5.3:+13209825 MS.gene67485:CDS
ATAATCATTCAAATGCCCAT+TGG 0.538622 5.3:-13209852 None:intergenic
ACGAGGATGAGCTTAAGTCT+TGG 0.544399 5.3:+13208738 MS.gene67485:CDS
AGGAAGAGGAGGAAGTTCGT+AGG 0.548370 5.3:+13209824 MS.gene67485:CDS
AGTTCGTAGGGAAAACCAAT+GGG 0.562143 5.3:+13209837 MS.gene67485:CDS
AAGTTCGTAGGGAAAACCAA+TGG 0.564773 5.3:+13209836 MS.gene67485:CDS
CTGATCAACCTTCACGAACT+CGG 0.567841 5.3:-13208765 None:intergenic
TTCCGATGGCGAGACCTTCG+AGG 0.579603 5.3:+13208550 MS.gene67485:CDS
ATCACTCTCAAGAGTTCCGA+TGG 0.585502 5.3:+13208536 MS.gene67485:CDS
TCTTGATGTTGAATGTCTTG+CGG 0.592623 5.3:-13209786 None:intergenic
TTGGGATTCCGAGTTCGTGA+AGG 0.596084 5.3:+13208757 MS.gene67485:CDS
GAAGACGATTGCGCTGACAG+TGG 0.597220 5.3:+13208620 MS.gene67485:CDS
TTTCTCTCCAGAGGAAGAGG+AGG 0.615178 5.3:+13209813 MS.gene67485:CDS
AACAGCTTCATCAACCTCGA+AGG 0.615888 5.3:-13208564 None:intergenic
CAAGAATGATTTCTCTCCAG+AGG 0.623448 5.3:+13209804 MS.gene67485:CDS
TACGAGCAAGATCTTGGCGA+AGG 0.626440 5.3:+13208661 MS.gene67485:CDS
ACTGTTGCAGACATGATCAA+GGG 0.659883 5.3:+13209745 MS.gene67485:CDS
TGCTGAAGACAAACCTAACG+AGG 0.677963 5.3:+13208721 MS.gene67485:CDS
GATCAAGGGAAAGACACCAG+AGG 0.742039 5.3:+13209759 MS.gene67485:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTTAA+TGG - chr5.3:13209631-13209650 None:intergenic 0.0%
!!! ATGAATATATTATGTTTTGT+TGG + chr5.3:13209355-13209374 MS.gene67485:intron 15.0%
!! ATATATGCATATAAACTCAA+AGG - chr5.3:13209303-13209322 None:intergenic 20.0%
!! CATATATACGATACAAAAAT+GGG + chr5.3:13209316-13209335 MS.gene67485:intron 20.0%
!! CTGTTAATAATAAAGGATTA+GGG + chr5.3:13208967-13208986 MS.gene67485:intron 20.0%
!! TATTATTAACAGCTATACAT+AGG - chr5.3:13208959-13208978 None:intergenic 20.0%
!! TGTATAGCTGTTAATAATAA+AGG + chr5.3:13208960-13208979 MS.gene67485:intron 20.0%
!!! ATTTCAATTTGTCTTTTGTT+TGG + chr5.3:13209053-13209072 MS.gene67485:intron 20.0%
!!! GGCAAAATATATATTTTCAA+AGG - chr5.3:13209190-13209209 None:intergenic 20.0%
!!! TCGTTTATTTGATTTTGTTT+TGG + chr5.3:13208870-13208889 MS.gene67485:intron 20.0%
!!! TGATATTTTTTTTCCTTTGT+AGG + chr5.3:13209675-13209694 MS.gene67485:intron 20.0%
!!! TTGAATCGTTTATTTGATTT+GGG + chr5.3:13208837-13208856 MS.gene67485:intron 20.0%
!!! TTTCAATTTGTCTTTTGTTT+GGG + chr5.3:13209054-13209073 MS.gene67485:intron 20.0%
! GCATATATACGATACAAAAA+TGG + chr5.3:13209315-13209334 MS.gene67485:intron 25.0%
! GCTGTTAATAATAAAGGATT+AGG + chr5.3:13208966-13208985 MS.gene67485:intron 25.0%
! GTTGAATCGTTTATTTGATT+TGG + chr5.3:13208836-13208855 MS.gene67485:intron 25.0%
! TGAAAAATCTGAATAGTTTC+TGG + chr5.3:13208929-13208948 MS.gene67485:intron 25.0%
! TGAATCTAAAAGGAATCAAA+AGG - chr5.3:13209444-13209463 None:intergenic 25.0%
! TGATAACCAAATGATGAATA+TGG + chr5.3:13209520-13209539 MS.gene67485:intron 25.0%
!! AGAGATATTCTGTTTTCATT+TGG + chr5.3:13209242-13209261 MS.gene67485:intron 25.0%
!! ATTCCTTTTAGATTCAAACT+TGG + chr5.3:13209448-13209467 MS.gene67485:intron 25.0%
!! TAATAAAGGATTAGGGTTTT+TGG + chr5.3:13208974-13208993 MS.gene67485:intron 25.0%
!! TAATAATCCTATGTTTCTGA+TGG + chr5.3:13209585-13209604 MS.gene67485:intron 25.0%
!! TTTTAATGGCAATGAGTTTA+AGG - chr5.3:13209617-13209636 None:intergenic 25.0%
!!! ATTTTGTTTTGGAATGTTTG+GGG + chr5.3:13208881-13208900 MS.gene67485:intron 25.0%
!!! GATTTTGTTTTGGAATGTTT+GGG + chr5.3:13208880-13208899 MS.gene67485:intron 25.0%
!!! TGATTTTGTTTTGGAATGTT+TGG + chr5.3:13208879-13208898 MS.gene67485:intron 25.0%
!!! TTTGTTTGGGTTGAATTTAA+TGG + chr5.3:13209067-13209086 MS.gene67485:intron 25.0%
!!! TTTTTGTGTTATTGAGTTGT+AGG + chr5.3:13209131-13209150 MS.gene67485:intron 25.0%
CAACCAAGTTTGAATCTAAA+AGG - chr5.3:13209454-13209473 None:intergenic 30.0%
GACAATCCATATTCATCATT+TGG - chr5.3:13209529-13209548 None:intergenic 30.0%
TGAGTTGTAGGATATTGTTA+TGG + chr5.3:13209143-13209162 MS.gene67485:intron 30.0%
! ATCTCATCTTGGTAAGTTTT+GGG + chr5.3:13208801-13208820 MS.gene67485:intron 30.0%
!! GTTTGAATTGTTTGCTTTTG+TGG + chr5.3:13209103-13209122 MS.gene67485:intron 30.0%
!!! GTTTTGTTGGCTTATCTTTT+CGG + chr5.3:13209368-13209387 MS.gene67485:intron 30.0%
!!! TTTTGGTTTTGATTGAGCTA+TGG + chr5.3:13208991-13209010 MS.gene67485:intron 30.0%
!!! TTTTGTTTTGGAATGTTTGG+GGG + chr5.3:13208882-13208901 MS.gene67485:intron 30.0%
AAACTTGAAGGTTTGAAAGG+GGG + chr5.3:13209212-13209231 MS.gene67485:intron 35.0%
CGAAACTTGAAGGTTTGAAA+GGG + chr5.3:13209210-13209229 MS.gene67485:intron 35.0%
GAAACTTGAAGGTTTGAAAG+GGG + chr5.3:13209211-13209230 MS.gene67485:intron 35.0%
GATGTAACCATCAGAAACAT+AGG - chr5.3:13209595-13209614 None:intergenic 35.0%
TCTTGATGTTGAATGTCTTG+CGG - chr5.3:13209789-13209808 None:intergenic 35.0%
! ATATTTTGCCCGAAACTTGA+AGG + chr5.3:13209200-13209219 MS.gene67485:intron 35.0%
! CCTTTCAAACCTTCAAGTTT+CGG - chr5.3:13209212-13209231 None:intergenic 35.0%
! CTTTCAAACCTTCAAGTTTC+GGG - chr5.3:13209211-13209230 None:intergenic 35.0%
! GATCTCATCTTGGTAAGTTT+TGG + chr5.3:13208800-13208819 MS.gene67485:intron 35.0%
!! TACGCTTTTTGATCTCATCT+TGG + chr5.3:13208790-13208809 MS.gene67485:CDS 35.0%
AAGATCTTGCTCGTAACGTT+GGG - chr5.3:13208656-13208675 None:intergenic 40.0%
AAGTAGTTAGCAGCCTACAA+AGG - chr5.3:13209691-13209710 None:intergenic 40.0%
AAGTTCGTAGGGAAAACCAA+TGG + chr5.3:13209836-13209855 MS.gene67485:CDS 40.0%
ACACCAGAAACCCCTAATTT+AGG - chr5.3:13208909-13208928 None:intergenic 40.0%
ACTGTTGCAGACATGATCAA+GGG + chr5.3:13209745-13209764 MS.gene67485:CDS 40.0%
AGTTCGTAGGGAAAACCAAT+GGG + chr5.3:13209837-13209856 MS.gene67485:CDS 40.0%
ATGTTTGGGGGTCCTAAATT+AGG + chr5.3:13208894-13208913 MS.gene67485:intron 40.0%
CAAGAATGATTTCTCTCCAG+AGG + chr5.3:13209804-13209823 MS.gene67485:CDS 40.0%
CCGAAACTTGAAGGTTTGAA+AGG + chr5.3:13209209-13209228 MS.gene67485:intron 40.0%
CTTGAATATCAAGAGCTTGC+TGG + chr5.3:13209708-13209727 MS.gene67485:CDS 40.0%
TGTTTGGGGGTCCTAAATTA+GGG + chr5.3:13208895-13208914 MS.gene67485:intron 40.0%
! TGGATTGTCATTTCTCACGA+CGG + chr5.3:13209540-13209559 MS.gene67485:intron 40.0%
AACAGCTTCATCAACCTCGA+AGG - chr5.3:13208567-13208586 None:intergenic 45.0%
ACGAGGATGAGCTTAAGTCT+TGG + chr5.3:13208738-13208757 MS.gene67485:CDS 45.0%
ATCACTCTCAAGAGTTCCGA+TGG + chr5.3:13208536-13208555 MS.gene67485:CDS 45.0%
CAACGTTACGAGCAAGATCT+TGG + chr5.3:13208655-13208674 MS.gene67485:CDS 45.0%
CAAGATCTTGCTCGTAACGT+TGG - chr5.3:13208657-13208676 None:intergenic 45.0%
CGAGGATGAGCTTAAGTCTT+GGG + chr5.3:13208739-13208758 MS.gene67485:CDS 45.0%
CTGATCAACCTTCACGAACT+CGG - chr5.3:13208768-13208787 None:intergenic 45.0%
GACTGTTGCAGACATGATCA+AGG + chr5.3:13209744-13209763 MS.gene67485:CDS 45.0%
GACTTAAGCTCATCCTCGTT+AGG - chr5.3:13208737-13208756 None:intergenic 45.0%
GGTCCTAAATTAGGGGTTTC+TGG + chr5.3:13208903-13208922 MS.gene67485:intron 45.0%
GTTTGGGGGTCCTAAATTAG+GGG + chr5.3:13208896-13208915 MS.gene67485:intron 45.0%
TGATCATGTCTGCAACAGTC+TGG - chr5.3:13209744-13209763 None:intergenic 45.0%
TGATTTCTCTCCAGAGGAAG+AGG + chr5.3:13209810-13209829 MS.gene67485:CDS 45.0%
TGCTGAAGACAAACCTAACG+AGG + chr5.3:13208721-13208740 MS.gene67485:CDS 45.0%
!! GGTTGATGAAGCTGTTGCTT+TGG + chr5.3:13208571-13208590 MS.gene67485:CDS 45.0%
AATGTCTTGCGGATCTCCTC+TGG - chr5.3:13209778-13209797 None:intergenic 50.0%
AGGAAGAGGAGGAAGTTCGT+AGG + chr5.3:13209824-13209843 MS.gene67485:CDS 50.0%
GATCAAGGGAAAGACACCAG+AGG + chr5.3:13209759-13209778 MS.gene67485:CDS 50.0%
GGAAGAGGAGGAAGTTCGTA+GGG + chr5.3:13209825-13209844 MS.gene67485:CDS 50.0%
TACGAGCAAGATCTTGGCGA+AGG + chr5.3:13208661-13208680 MS.gene67485:CDS 50.0%
TGCTCGTAACGTTGGGAAGA+GGG - chr5.3:13208649-13208668 None:intergenic 50.0%
TTGCTCGTAACGTTGGGAAG+AGG - chr5.3:13208650-13208669 None:intergenic 50.0%
TTGGGATTCCGAGTTCGTGA+AGG + chr5.3:13208757-13208776 MS.gene67485:CDS 50.0%
TTTCTCTCCAGAGGAAGAGG+AGG + chr5.3:13209813-13209832 MS.gene67485:CDS 50.0%
! CGAGTTCGTGAAGGTTGATC+AGG + chr5.3:13208766-13208785 MS.gene67485:CDS 50.0%
AACCTCGAAGGTCTCGCCAT+CGG - chr5.3:13208555-13208574 None:intergenic 55.0%
CATGTCTGCAACAGTCTGGC+AGG - chr5.3:13209740-13209759 None:intergenic 55.0%
CGAACTTCCTCCTCTTCCTC+TGG - chr5.3:13209823-13209842 None:intergenic 55.0%
! GAAGACGATTGCGCTGACAG+TGG + chr5.3:13208620-13208639 MS.gene67485:CDS 55.0%
TTCCGATGGCGAGACCTTCG+AGG + chr5.3:13208550-13208569 MS.gene67485:CDS 60.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 13208518 13209870 13208518 ID=MS.gene67485
chr5.3 mRNA 13208518 13209870 13208518 ID=MS.gene67485.t1;Parent=MS.gene67485
chr5.3 exon 13208518 13208811 13208518 ID=MS.gene67485.t1.exon1;Parent=MS.gene67485.t1
chr5.3 CDS 13208518 13208811 13208518 ID=cds.MS.gene67485.t1;Parent=MS.gene67485.t1
chr5.3 exon 13209697 13209870 13209697 ID=MS.gene67485.t1.exon2;Parent=MS.gene67485.t1
chr5.3 CDS 13209697 13209870 13209697 ID=cds.MS.gene67485.t1;Parent=MS.gene67485.t1
Gene Sequence

>MS.gene67485

ATGTCTTCAACAAGAAAGATCACTCTCAAGAGTTCCGATGGCGAGACCTTCGAGGTTGATGAAGCTGTTGCTTTGGAATCTCAGACGATCAAGCATATGATCGAAGACGATTGCGCTGACAGTGGAATCCCTCTTCCCAACGTTACGAGCAAGATCTTGGCGAAGGTGATTGAGTATTGCAAGAAGCATGTTGACGCTGCTGCTGCTGAAGACAAACCTAACGAGGATGAGCTTAAGTCTTGGGATTCCGAGTTCGTGAAGGTTGATCAGGCTACGCTTTTTGATCTCATCTTGGTAAGTTTTGGGATTTTAATTATTGTTGAATCGTTTATTTGATTTGGGTTTTGTTGAATCGTTTATTTGATTTTGTTTTGGAATGTTTGGGGGTCCTAAATTAGGGGTTTCTGGTGTTGAAAAATCTGAATAGTTTCTGGTTTTCCTATGTATAGCTGTTAATAATAAAGGATTAGGGTTTTTGGTTTTGATTGAGCTATGGTTGATTCTGATTTTGCTCTTGATCGTTGAAGTTTTTTCAATTTCAATTTGTCTTTTGTTTGGGTTGAATTTAATGGATTTTCAACAGTTGTTTGAATTGTTTGCTTTTGTGGCTATCTTTTTGTGTTATTGAGTTGTAGGATATTGTTATGGTTGATGCTGCTATTGTTAAATCCTTTGAAAATATATATTTTGCCCGAAACTTGAAGGTTTGAAAGGGGGAACATTCAGAGATATTCTGTTTTCATTTGGCTTGTTATATGAGAAACTATAATGAGTAGTCAACTCCTTTGAGTTTATATGCATATATACGATACAAAAATGGGTTCTTAAAATATTAATATGAATATATTATGTTTTGTTGGCTTATCTTTTCGGTGTGTTGAAATATTTTCTGTTCTAATATAATCTCACTCTTGTTATATTCACCTTTTGATTCCTTTTAGATTCAAACTTGGTTGCTTTATCGAGTTTATTATTCAGTGTTTGTATCACACAATTGTGTACTGATAACCAAATGATGAATATGGATTGTCATTTCTCACGACGGTCGTCTGAGTTAAACTATGATGTAATAATCCTATGTTTCTGATGGTTACATCCTTAAACTCATTGCCATTAAAAAAAAAAAAAAAAAAACAAATTTGCTTTGCATACTGATATGATATTTTTTTTCCTTTGTAGGCTGCTAACTACTTGAATATCAAGAGCTTGCTGGATCTTACCTGCCAGACTGTTGCAGACATGATCAAGGGAAAGACACCAGAGGAGATCCGCAAGACATTCAACATCAAGAATGATTTCTCTCCAGAGGAAGAGGAGGAAGTTCGTAGGGAAAACCAATGGGCATTTGAATGA

Protein sequence

>MS.gene67485.t1

MSSTRKITLKSSDGETFEVDEAVALESQTIKHMIEDDCADSGIPLPNVTSKILAKVIEYCKKHVDAAAAEDKPNEDELKSWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPEEEEEVRRENQWAFE