Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67485.t1 | XP_003612227.1 | 98.7 | 155 | 2 | 0 | 1 | 155 | 1 | 155 | 4.70E-78 | 300.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67485.t1 | Q9FHW7 | 76.6 | 171 | 24 | 1 | 1 | 155 | 1 | 171 | 4.6e-66 | 251.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67485.t1 | Q155U2 | 98.7 | 155 | 2 | 0 | 1 | 155 | 1 | 155 | 3.4e-78 | 300.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049129 | MS.gene67485 | -0.82837 | 9.34E-55 | -1.69E-46 |
MS.gene049140 | MS.gene67485 | 0.810669 | 1.03E-50 | -1.69E-46 |
MS.gene04918 | MS.gene67485 | 0.839239 | 1.78E-57 | -1.69E-46 |
MS.gene04919 | MS.gene67485 | 0.816135 | 6.46E-52 | -1.69E-46 |
MS.gene04920 | MS.gene67485 | 0.836996 | 6.74E-57 | -1.69E-46 |
MS.gene049283 | MS.gene67485 | 0.85317 | 2.85E-61 | -1.69E-46 |
MS.gene049368 | MS.gene67485 | 0.800159 | 1.64E-48 | -1.69E-46 |
MS.gene049411 | MS.gene67485 | 0.83263 | 8.47E-56 | -1.69E-46 |
MS.gene049499 | MS.gene67485 | 0.810715 | 1.00E-50 | -1.69E-46 |
MS.gene049580 | MS.gene67485 | 0.829862 | 4.06E-55 | -1.69E-46 |
MS.gene049680 | MS.gene67485 | 0.899965 | 1.17E-77 | -1.69E-46 |
MS.gene049983 | MS.gene67485 | 0.809732 | 1.64E-50 | -1.69E-46 |
MS.gene050277 | MS.gene67485 | 0.809082 | 2.26E-50 | -1.69E-46 |
MS.gene05029 | MS.gene67485 | 0.870397 | 1.51E-66 | -1.69E-46 |
MS.gene050320 | MS.gene67485 | 0.814293 | 1.66E-51 | -1.69E-46 |
MS.gene050646 | MS.gene67485 | 0.803382 | 3.58E-49 | -1.69E-46 |
MS.gene050689 | MS.gene67485 | 0.809549 | 1.79E-50 | -1.69E-46 |
MS.gene050752 | MS.gene67485 | 0.893247 | 7.51E-75 | -1.69E-46 |
MS.gene050838 | MS.gene67485 | 0.829978 | 3.80E-55 | -1.69E-46 |
MS.gene050945 | MS.gene67485 | 0.871542 | 6.31E-67 | -1.69E-46 |
MS.gene050955 | MS.gene67485 | 0.8973 | 1.61E-76 | -1.69E-46 |
MS.gene051003 | MS.gene67485 | 0.894314 | 2.77E-75 | -1.69E-46 |
MS.gene051043 | MS.gene67485 | 0.811492 | 6.81E-51 | -1.69E-46 |
MS.gene051234 | MS.gene67485 | 0.858943 | 5.82E-63 | -1.69E-46 |
MS.gene051343 | MS.gene67485 | 0.867141 | 1.70E-65 | -1.69E-46 |
MS.gene05134 | MS.gene67485 | 0.8161 | 6.58E-52 | -1.69E-46 |
MS.gene051363 | MS.gene67485 | 0.804186 | 2.44E-49 | -1.69E-46 |
MS.gene051365 | MS.gene67485 | 0.80525 | 1.46E-49 | -1.69E-46 |
MS.gene051597 | MS.gene67485 | 0.825565 | 4.37E-54 | -1.69E-46 |
MS.gene051676 | MS.gene67485 | 0.820941 | 5.26E-53 | -1.69E-46 |
MS.gene051699 | MS.gene67485 | 0.849116 | 3.98E-60 | -1.69E-46 |
MS.gene051748 | MS.gene67485 | 0.805381 | 1.37E-49 | -1.69E-46 |
MS.gene05188 | MS.gene67485 | 0.853629 | 2.11E-61 | -1.69E-46 |
MS.gene051902 | MS.gene67485 | 0.846399 | 2.23E-59 | -1.69E-46 |
MS.gene051903 | MS.gene67485 | 0.854879 | 9.17E-62 | -1.69E-46 |
MS.gene051975 | MS.gene67485 | 0.890518 | 9.17E-74 | -1.69E-46 |
MS.gene052072 | MS.gene67485 | 0.863776 | 1.96E-64 | -1.69E-46 |
MS.gene052296 | MS.gene67485 | 0.822594 | 2.18E-53 | -1.69E-46 |
MS.gene052434 | MS.gene67485 | 0.82106 | 4.94E-53 | -1.69E-46 |
MS.gene052479 | MS.gene67485 | 0.830147 | 3.46E-55 | -1.69E-46 |
MS.gene052533 | MS.gene67485 | 0.836754 | 7.77E-57 | -1.69E-46 |
MS.gene052793 | MS.gene67485 | 0.821755 | 3.41E-53 | -1.69E-46 |
MS.gene052818 | MS.gene67485 | -0.820628 | 6.20E-53 | -1.69E-46 |
MS.gene052889 | MS.gene67485 | 0.812943 | 3.29E-51 | -1.69E-46 |
MS.gene052947 | MS.gene67485 | 0.851806 | 6.98E-61 | -1.69E-46 |
MS.gene052954 | MS.gene67485 | 0.802934 | 4.43E-49 | -1.69E-46 |
MS.gene053006 | MS.gene67485 | 0.817158 | 3.81E-52 | -1.69E-46 |
MS.gene053045 | MS.gene67485 | 0.825606 | 4.28E-54 | -1.69E-46 |
MS.gene053058 | MS.gene67485 | 0.851474 | 8.67E-61 | -1.69E-46 |
MS.gene053295 | MS.gene67485 | 0.804958 | 1.68E-49 | -1.69E-46 |
MS.gene053298 | MS.gene67485 | 0.850575 | 1.55E-60 | -1.69E-46 |
MS.gene053401 | MS.gene67485 | 0.832463 | 9.32E-56 | -1.69E-46 |
MS.gene053564 | MS.gene67485 | 0.839729 | 1.33E-57 | -1.69E-46 |
MS.gene053879 | MS.gene67485 | 0.827068 | 1.92E-54 | -1.69E-46 |
MS.gene053931 | MS.gene67485 | 0.826351 | 2.85E-54 | -1.69E-46 |
MS.gene053952 | MS.gene67485 | 0.808 | 3.84E-50 | -1.69E-46 |
MS.gene053963 | MS.gene67485 | 0.847205 | 1.34E-59 | -1.69E-46 |
MS.gene054004 | MS.gene67485 | 0.845786 | 3.27E-59 | -1.69E-46 |
MS.gene054222 | MS.gene67485 | 0.831097 | 2.03E-55 | -1.69E-46 |
MS.gene054403 | MS.gene67485 | 0.898629 | 4.40E-77 | -1.69E-46 |
MS.gene054413 | MS.gene67485 | 0.845234 | 4.61E-59 | -1.69E-46 |
MS.gene05469 | MS.gene67485 | 0.870608 | 1.28E-66 | -1.69E-46 |
MS.gene054957 | MS.gene67485 | 0.8404 | 8.89E-58 | -1.69E-46 |
MS.gene055150 | MS.gene67485 | 0.82801 | 1.14E-54 | -1.69E-46 |
MS.gene05517 | MS.gene67485 | 0.839439 | 1.58E-57 | -1.69E-46 |
MS.gene05548 | MS.gene67485 | 0.813379 | 2.64E-51 | -1.69E-46 |
MS.gene055513 | MS.gene67485 | 0.807265 | 5.50E-50 | -1.69E-46 |
MS.gene055555 | MS.gene67485 | 0.852405 | 4.72E-61 | -1.69E-46 |
MS.gene055603 | MS.gene67485 | 0.812808 | 3.52E-51 | -1.69E-46 |
MS.gene055765 | MS.gene67485 | 0.814385 | 1.58E-51 | -1.69E-46 |
MS.gene055841 | MS.gene67485 | 0.825709 | 4.04E-54 | -1.69E-46 |
MS.gene056071 | MS.gene67485 | 0.811744 | 6.01E-51 | -1.69E-46 |
MS.gene056091 | MS.gene67485 | 0.809229 | 2.10E-50 | -1.69E-46 |
MS.gene056181 | MS.gene67485 | 0.803107 | 4.08E-49 | -1.69E-46 |
MS.gene056215 | MS.gene67485 | 0.806261 | 8.96E-50 | -1.69E-46 |
MS.gene05636 | MS.gene67485 | 0.800507 | 1.40E-48 | -1.69E-46 |
MS.gene056403 | MS.gene67485 | 0.800933 | 1.14E-48 | -1.69E-46 |
MS.gene056631 | MS.gene67485 | 0.820645 | 6.15E-53 | -1.69E-46 |
MS.gene056699 | MS.gene67485 | 0.837898 | 3.96E-57 | -1.69E-46 |
MS.gene056787 | MS.gene67485 | 0.814343 | 1.62E-51 | -1.69E-46 |
MS.gene05689 | MS.gene67485 | 0.823351 | 1.45E-53 | -1.69E-46 |
MS.gene056986 | MS.gene67485 | 0.91263 | 1.56E-83 | -1.69E-46 |
MS.gene057094 | MS.gene67485 | 0.813501 | 2.48E-51 | -1.69E-46 |
MS.gene057102 | MS.gene67485 | 0.89363 | 5.26E-75 | -1.69E-46 |
MS.gene057208 | MS.gene67485 | 0.818496 | 1.90E-52 | -1.69E-46 |
MS.gene057234 | MS.gene67485 | 0.81909 | 1.39E-52 | -1.69E-46 |
MS.gene057392 | MS.gene67485 | 0.814677 | 1.36E-51 | -1.69E-46 |
MS.gene057622 | MS.gene67485 | 0.814608 | 1.41E-51 | -1.69E-46 |
MS.gene057694 | MS.gene67485 | 0.831138 | 1.98E-55 | -1.69E-46 |
MS.gene057705 | MS.gene67485 | 0.868449 | 6.48E-66 | -1.69E-46 |
MS.gene05781 | MS.gene67485 | 0.845222 | 4.65E-59 | -1.69E-46 |
MS.gene057890 | MS.gene67485 | -0.818521 | 1.88E-52 | -1.69E-46 |
MS.gene057999 | MS.gene67485 | 0.892872 | 1.06E-74 | -1.69E-46 |
MS.gene058008 | MS.gene67485 | 0.824114 | 9.62E-54 | -1.69E-46 |
MS.gene058074 | MS.gene67485 | 0.850995 | 1.18E-60 | -1.69E-46 |
MS.gene058159 | MS.gene67485 | 0.835865 | 1.31E-56 | -1.69E-46 |
MS.gene058238 | MS.gene67485 | 0.832822 | 7.59E-56 | -1.69E-46 |
MS.gene058245 | MS.gene67485 | 0.802535 | 5.36E-49 | -1.69E-46 |
MS.gene058592 | MS.gene67485 | 0.814395 | 1.57E-51 | -1.69E-46 |
MS.gene058781 | MS.gene67485 | 0.80092 | 1.15E-48 | -1.69E-46 |
MS.gene059146 | MS.gene67485 | 0.910421 | 1.91E-82 | -1.69E-46 |
MS.gene059227 | MS.gene67485 | 0.831662 | 1.47E-55 | -1.69E-46 |
MS.gene059360 | MS.gene67485 | 0.806997 | 6.27E-50 | -1.69E-46 |
MS.gene05952 | MS.gene67485 | 0.833686 | 4.62E-56 | -1.69E-46 |
MS.gene059830 | MS.gene67485 | 0.821177 | 4.64E-53 | -1.69E-46 |
MS.gene05985 | MS.gene67485 | -0.887682 | 1.15E-72 | -1.69E-46 |
MS.gene059901 | MS.gene67485 | -0.874687 | 5.56E-68 | -1.69E-46 |
MS.gene059935 | MS.gene67485 | 0.807031 | 6.16E-50 | -1.69E-46 |
MS.gene06011 | MS.gene67485 | 0.872297 | 3.54E-67 | -1.69E-46 |
MS.gene06018 | MS.gene67485 | 0.823177 | 1.59E-53 | -1.69E-46 |
MS.gene060244 | MS.gene67485 | 0.831195 | 1.92E-55 | -1.69E-46 |
MS.gene060365 | MS.gene67485 | 0.836695 | 8.05E-57 | -1.69E-46 |
MS.gene060429 | MS.gene67485 | 0.810419 | 1.16E-50 | -1.69E-46 |
MS.gene060586 | MS.gene67485 | 0.807599 | 4.67E-50 | -1.69E-46 |
MS.gene060763 | MS.gene67485 | 0.867235 | 1.59E-65 | -1.69E-46 |
MS.gene060830 | MS.gene67485 | 0.819088 | 1.40E-52 | -1.69E-46 |
MS.gene060933 | MS.gene67485 | 0.801317 | 9.53E-49 | -1.69E-46 |
MS.gene060935 | MS.gene67485 | 0.858452 | 8.16E-63 | -1.69E-46 |
MS.gene060937 | MS.gene67485 | 0.858508 | 7.85E-63 | -1.69E-46 |
MS.gene061100 | MS.gene67485 | 0.819545 | 1.10E-52 | -1.69E-46 |
MS.gene06118 | MS.gene67485 | 0.814355 | 1.61E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene34691 | MS.gene67485 | PPI |
MS.gene00939 | MS.gene67485 | PPI |
MS.gene055864 | MS.gene67485 | PPI |
MS.gene33411 | MS.gene67485 | PPI |
MS.gene59610 | MS.gene67485 | PPI |
MS.gene92141 | MS.gene67485 | PPI |
MS.gene068281 | MS.gene67485 | PPI |
MS.gene25471 | MS.gene67485 | PPI |
MS.gene79720 | MS.gene67485 | PPI |
MS.gene98172 | MS.gene67485 | PPI |
MS.gene35971 | MS.gene67485 | PPI |
MS.gene002824 | MS.gene67485 | PPI |
MS.gene25469 | MS.gene67485 | PPI |
MS.gene24959 | MS.gene67485 | PPI |
MS.gene047254 | MS.gene67485 | PPI |
MS.gene67485 | MS.gene33667 | PPI |
MS.gene79719 | MS.gene67485 | PPI |
MS.gene004511 | MS.gene67485 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67485.t1 | MTR_5g022730 | 98.710 | 155 | 2 | 0 | 1 | 155 | 1 | 155 | 1.03e-111 | 313 |
MS.gene67485.t1 | MTR_5g022710 | 96.774 | 155 | 5 | 0 | 1 | 155 | 1 | 155 | 6.84e-110 | 309 |
MS.gene67485.t1 | MTR_7g021400 | 86.364 | 154 | 21 | 0 | 2 | 155 | 3 | 156 | 4.75e-91 | 261 |
MS.gene67485.t1 | MTR_7g094150 | 86.538 | 156 | 20 | 1 | 1 | 155 | 1 | 156 | 1.83e-89 | 257 |
MS.gene67485.t1 | MTR_7g094170 | 84.416 | 154 | 24 | 0 | 2 | 155 | 3 | 156 | 4.50e-88 | 254 |
MS.gene67485.t1 | MTR_4g032400 | 78.710 | 155 | 32 | 1 | 2 | 155 | 9 | 163 | 2.37e-85 | 247 |
MS.gene67485.t1 | MTR_7g021380 | 82.468 | 154 | 27 | 0 | 2 | 155 | 3 | 156 | 4.70e-84 | 244 |
MS.gene67485.t1 | MTR_4g032450 | 75.484 | 155 | 37 | 1 | 2 | 155 | 21 | 175 | 4.71e-84 | 244 |
MS.gene67485.t1 | MTR_3g110048 | 76.282 | 156 | 35 | 1 | 2 | 155 | 3 | 158 | 4.76e-84 | 244 |
MS.gene67485.t1 | MTR_7g094120 | 74.359 | 156 | 38 | 1 | 2 | 155 | 4 | 159 | 8.51e-83 | 241 |
MS.gene67485.t1 | MTR_5g085030 | 72.903 | 155 | 41 | 1 | 1 | 154 | 1 | 155 | 1.45e-78 | 230 |
MS.gene67485.t1 | MTR_8g056060 | 74.194 | 155 | 39 | 1 | 2 | 155 | 3 | 157 | 2.83e-78 | 229 |
MS.gene67485.t1 | MTR_7g094280 | 72.152 | 158 | 41 | 2 | 1 | 155 | 1 | 158 | 5.71e-78 | 228 |
MS.gene67485.t1 | MTR_8g468480 | 70.513 | 156 | 45 | 1 | 1 | 155 | 1 | 156 | 1.95e-77 | 227 |
MS.gene67485.t1 | MTR_4g032460 | 73.077 | 156 | 35 | 2 | 1 | 155 | 1 | 150 | 8.58e-72 | 213 |
MS.gene67485.t1 | MTR_4g032510 | 69.677 | 155 | 39 | 3 | 3 | 155 | 5 | 153 | 1.75e-71 | 212 |
MS.gene67485.t1 | MTR_7g094310 | 68.987 | 158 | 36 | 3 | 1 | 155 | 1 | 148 | 2.42e-70 | 209 |
MS.gene67485.t1 | MTR_4g032500 | 67.097 | 155 | 44 | 2 | 2 | 155 | 4 | 152 | 1.74e-69 | 207 |
MS.gene67485.t1 | MTR_5g082340 | 67.308 | 156 | 39 | 2 | 1 | 155 | 1 | 145 | 1.73e-65 | 196 |
MS.gene67485.t1 | MTR_4g033455 | 61.039 | 154 | 60 | 0 | 2 | 155 | 7 | 160 | 2.18e-65 | 197 |
MS.gene67485.t1 | MTR_4g017860 | 54.872 | 195 | 45 | 3 | 4 | 155 | 26 | 220 | 1.87e-63 | 194 |
MS.gene67485.t1 | MTR_1g099870 | 84.314 | 102 | 14 | 1 | 56 | 155 | 2 | 103 | 7.17e-59 | 178 |
MS.gene67485.t1 | MTR_4g033460 | 60.714 | 140 | 55 | 0 | 2 | 141 | 7 | 146 | 8.95e-59 | 183 |
MS.gene67485.t1 | MTR_4g033460 | 60.215 | 93 | 29 | 1 | 40 | 132 | 161 | 245 | 1.86e-30 | 110 |
MS.gene67485.t1 | MTR_4g021390 | 59.091 | 154 | 60 | 1 | 2 | 155 | 5 | 155 | 1.67e-58 | 179 |
MS.gene67485.t1 | MTR_8g089730 | 69.919 | 123 | 20 | 1 | 33 | 155 | 1 | 106 | 2.96e-50 | 156 |
MS.gene67485.t1 | MTR_7g094320 | 55.414 | 157 | 28 | 2 | 1 | 155 | 1 | 117 | 4.05e-47 | 149 |
MS.gene67485.t1 | MTR_4g032420 | 61.417 | 127 | 34 | 3 | 30 | 155 | 38 | 150 | 6.43e-47 | 149 |
MS.gene67485.t1 | MTR_4g032470 | 51.370 | 146 | 27 | 2 | 11 | 155 | 32 | 134 | 1.19e-43 | 140 |
MS.gene67485.t1 | MTR_7g006370 | 55.000 | 140 | 54 | 2 | 2 | 141 | 5 | 135 | 1.55e-43 | 140 |
MS.gene67485.t1 | MTR_4g131980 | 65.000 | 120 | 36 | 3 | 1 | 118 | 1 | 116 | 1.18e-41 | 136 |
MS.gene67485.t1 | MTR_4g127240 | 66.990 | 103 | 28 | 4 | 39 | 139 | 26 | 124 | 1.89e-40 | 132 |
MS.gene67485.t1 | MTR_7g094410 | 53.247 | 154 | 30 | 4 | 2 | 113 | 3 | 156 | 3.34e-40 | 133 |
MS.gene67485.t1 | MTR_7g094360 | 46.512 | 172 | 38 | 4 | 1 | 118 | 1 | 172 | 2.12e-38 | 129 |
MS.gene67485.t1 | MTR_8g056090 | 49.351 | 154 | 45 | 6 | 2 | 153 | 3 | 125 | 8.07e-36 | 120 |
MS.gene67485.t1 | MTR_4g119422 | 50.000 | 146 | 66 | 2 | 2 | 145 | 228 | 368 | 1.75e-35 | 126 |
MS.gene67485.t1 | MTR_1g112590 | 39.355 | 155 | 78 | 2 | 7 | 145 | 1 | 155 | 1.63e-32 | 113 |
MS.gene67485.t1 | MTR_7g071200 | 71.014 | 69 | 19 | 1 | 88 | 155 | 4 | 72 | 1.22e-28 | 100 |
MS.gene67485.t1 | MTR_2g066010 | 41.722 | 151 | 76 | 5 | 7 | 154 | 20 | 161 | 2.99e-27 | 101 |
MS.gene67485.t1 | MTR_4g032520 | 44.444 | 144 | 38 | 4 | 28 | 153 | 1 | 120 | 4.23e-27 | 99.0 |
MS.gene67485.t1 | MTR_2g065720 | 41.060 | 151 | 77 | 5 | 7 | 154 | 37 | 178 | 3.84e-26 | 98.6 |
MS.gene67485.t1 | MTR_5g096950 | 36.538 | 156 | 80 | 3 | 3 | 154 | 2 | 142 | 2.69e-23 | 89.7 |
MS.gene67485.t1 | MTR_7g094350 | 48.598 | 107 | 33 | 2 | 2 | 108 | 3 | 87 | 2.74e-23 | 90.9 |
MS.gene67485.t1 | MTR_7g094350 | 51.685 | 89 | 39 | 3 | 47 | 134 | 102 | 187 | 7.52e-20 | 82.0 |
MS.gene67485.t1 | MTR_4g032540 | 65.079 | 63 | 21 | 1 | 89 | 150 | 70 | 132 | 4.53e-23 | 88.6 |
MS.gene67485.t1 | MTR_2g018980 | 34.667 | 150 | 85 | 3 | 7 | 155 | 3 | 140 | 2.59e-22 | 87.0 |
MS.gene67485.t1 | MTR_1g042510 | 35.256 | 156 | 63 | 4 | 7 | 145 | 1 | 135 | 4.45e-22 | 89.7 |
MS.gene67485.t1 | MTR_1g112570 | 36.691 | 139 | 63 | 4 | 7 | 127 | 1 | 132 | 1.06e-20 | 85.9 |
MS.gene67485.t1 | MTR_5g078680 | 32.051 | 156 | 68 | 3 | 7 | 145 | 1 | 135 | 2.08e-19 | 82.0 |
MS.gene67485.t1 | MTR_6g053620 | 36.806 | 144 | 81 | 5 | 7 | 145 | 17 | 155 | 3.25e-19 | 82.8 |
MS.gene67485.t1 | MTR_6g053620 | 36.806 | 144 | 81 | 5 | 7 | 145 | 17 | 155 | 3.69e-19 | 82.8 |
MS.gene67485.t1 | MTR_8g007195 | 34.286 | 140 | 80 | 4 | 9 | 142 | 13 | 146 | 2.17e-18 | 80.1 |
MS.gene67485.t1 | MTR_7g077810 | 34.722 | 144 | 84 | 4 | 7 | 145 | 18 | 156 | 7.62e-18 | 79.0 |
MS.gene67485.t1 | MTR_8g007185 | 32.877 | 146 | 87 | 4 | 7 | 146 | 11 | 151 | 7.42e-17 | 75.9 |
MS.gene67485.t1 | MTR_2g100830 | 33.793 | 145 | 80 | 5 | 9 | 145 | 13 | 149 | 7.90e-17 | 75.9 |
MS.gene67485.t1 | MTR_2g100825 | 32.867 | 143 | 87 | 4 | 7 | 145 | 11 | 148 | 1.32e-16 | 75.1 |
MS.gene67485.t1 | MTR_8g007205 | 32.877 | 146 | 87 | 4 | 7 | 146 | 11 | 151 | 1.33e-16 | 75.1 |
MS.gene67485.t1 | MTR_7g036780 | 32.609 | 138 | 83 | 5 | 2 | 134 | 4 | 136 | 3.46e-15 | 70.5 |
MS.gene67485.t1 | MTR_4g131910 | 39.286 | 112 | 58 | 2 | 4 | 111 | 133 | 238 | 1.23e-14 | 68.9 |
MS.gene67485.t1 | MTR_8g030670 | 30.345 | 145 | 91 | 3 | 9 | 148 | 20 | 159 | 2.10e-14 | 69.3 |
MS.gene67485.t1 | MTR_3g061700 | 33.684 | 95 | 56 | 2 | 52 | 145 | 1 | 89 | 1.85e-12 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67485.t1 | AT5G42190 | 76.608 | 171 | 24 | 1 | 1 | 155 | 1 | 171 | 7.00e-86 | 249 |
MS.gene67485.t1 | AT1G75950 | 78.616 | 159 | 28 | 1 | 3 | 155 | 2 | 160 | 1.67e-83 | 243 |
MS.gene67485.t1 | AT1G20140 | 73.006 | 163 | 36 | 3 | 1 | 155 | 1 | 163 | 2.22e-82 | 240 |
MS.gene67485.t1 | AT2G25700 | 69.325 | 163 | 42 | 3 | 1 | 155 | 1 | 163 | 9.93e-78 | 228 |
MS.gene67485.t1 | AT4G34210 | 70.779 | 154 | 41 | 2 | 3 | 155 | 2 | 152 | 9.14e-77 | 225 |
MS.gene67485.t1 | AT4G34470 | 70.130 | 154 | 42 | 2 | 3 | 155 | 2 | 152 | 5.40e-76 | 223 |
MS.gene67485.t1 | AT3G21860 | 67.742 | 155 | 44 | 3 | 3 | 155 | 2 | 152 | 2.03e-68 | 204 |
MS.gene67485.t1 | AT3G21850 | 65.161 | 155 | 49 | 3 | 3 | 155 | 2 | 153 | 3.17e-67 | 201 |
MS.gene67485.t1 | AT3G60010 | 64.331 | 157 | 47 | 3 | 4 | 155 | 2 | 154 | 2.04e-66 | 199 |
MS.gene67485.t1 | AT2G03170 | 62.987 | 154 | 50 | 2 | 3 | 155 | 2 | 149 | 9.10e-64 | 192 |
MS.gene67485.t1 | AT2G03190 | 56.024 | 166 | 60 | 3 | 3 | 155 | 2 | 167 | 2.63e-59 | 182 |
MS.gene67485.t1 | AT3G60020 | 56.962 | 158 | 56 | 3 | 4 | 155 | 2 | 153 | 7.07e-57 | 175 |
MS.gene67485.t1 | AT3G21830 | 57.143 | 154 | 62 | 2 | 3 | 155 | 2 | 152 | 3.27e-56 | 173 |
MS.gene67485.t1 | AT2G03160 | 49.206 | 189 | 60 | 3 | 3 | 155 | 2 | 190 | 4.57e-56 | 174 |
MS.gene67485.t1 | AT2G20160 | 55.556 | 153 | 62 | 2 | 3 | 154 | 2 | 149 | 8.86e-54 | 167 |
MS.gene67485.t1 | AT3G25650 | 57.831 | 166 | 57 | 5 | 3 | 155 | 2 | 167 | 1.35e-53 | 167 |
MS.gene67485.t1 | AT1G10230 | 57.419 | 155 | 63 | 2 | 3 | 154 | 2 | 156 | 2.13e-52 | 164 |
MS.gene67485.t1 | AT3G21840 | 59.167 | 120 | 43 | 3 | 3 | 120 | 2 | 117 | 6.22e-38 | 126 |
MS.gene67485.t1 | AT3G53060 | 66.279 | 86 | 22 | 3 | 28 | 112 | 1 | 80 | 7.63e-32 | 109 |
MS.gene67485.t1 | AT3G61415 | 34.028 | 144 | 85 | 5 | 7 | 145 | 18 | 156 | 2.37e-16 | 74.7 |
MS.gene67485.t1 | AT3G61415 | 33.333 | 144 | 86 | 4 | 7 | 145 | 18 | 156 | 2.47e-16 | 74.7 |
MS.gene67485.t1 | AT2G45950 | 31.944 | 144 | 88 | 4 | 7 | 145 | 18 | 156 | 3.31e-16 | 74.3 |
MS.gene67485.t1 | AT2G45950 | 31.944 | 144 | 88 | 4 | 7 | 145 | 18 | 156 | 3.31e-16 | 74.3 |
MS.gene67485.t1 | AT2G45950 | 31.944 | 144 | 88 | 4 | 7 | 145 | 18 | 156 | 3.89e-16 | 74.3 |
MS.gene67485.t1 | AT2G45950 | 31.944 | 144 | 88 | 4 | 7 | 145 | 18 | 156 | 3.89e-16 | 74.3 |
MS.gene67485.t1 | AT2G45950 | 31.944 | 144 | 88 | 4 | 7 | 145 | 18 | 156 | 3.89e-16 | 74.3 |
Find 36 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAACGTTACGAGCAAGATCT+TGG | 0.349619 | 5.3:+13208655 | MS.gene67485:CDS |
CTTGAATATCAAGAGCTTGC+TGG | 0.389953 | 5.3:+13209708 | MS.gene67485:CDS |
CGAGGATGAGCTTAAGTCTT+GGG | 0.409245 | 5.3:+13208739 | MS.gene67485:CDS |
AAGATCTTGCTCGTAACGTT+GGG | 0.435888 | 5.3:-13208653 | None:intergenic |
CGAGTTCGTGAAGGTTGATC+AGG | 0.440775 | 5.3:+13208766 | MS.gene67485:CDS |
GGTTGATGAAGCTGTTGCTT+TGG | 0.442319 | 5.3:+13208571 | MS.gene67485:CDS |
AATGTCTTGCGGATCTCCTC+TGG | 0.448832 | 5.3:-13209775 | None:intergenic |
GACTTAAGCTCATCCTCGTT+AGG | 0.455978 | 5.3:-13208734 | None:intergenic |
TGATCATGTCTGCAACAGTC+TGG | 0.461006 | 5.3:-13209741 | None:intergenic |
TGATTTCTCTCCAGAGGAAG+AGG | 0.475889 | 5.3:+13209810 | MS.gene67485:CDS |
CGAACTTCCTCCTCTTCCTC+TGG | 0.494352 | 5.3:-13209820 | None:intergenic |
CATGTCTGCAACAGTCTGGC+AGG | 0.496105 | 5.3:-13209737 | None:intergenic |
CAAGATCTTGCTCGTAACGT+TGG | 0.499561 | 5.3:-13208654 | None:intergenic |
TGCTCGTAACGTTGGGAAGA+GGG | 0.510548 | 5.3:-13208646 | None:intergenic |
GACTGTTGCAGACATGATCA+AGG | 0.534990 | 5.3:+13209744 | MS.gene67485:CDS |
TTGCTCGTAACGTTGGGAAG+AGG | 0.535258 | 5.3:-13208647 | None:intergenic |
AACCTCGAAGGTCTCGCCAT+CGG | 0.535779 | 5.3:-13208552 | None:intergenic |
GGAAGAGGAGGAAGTTCGTA+GGG | 0.537389 | 5.3:+13209825 | MS.gene67485:CDS |
ATAATCATTCAAATGCCCAT+TGG | 0.538622 | 5.3:-13209852 | None:intergenic |
ACGAGGATGAGCTTAAGTCT+TGG | 0.544399 | 5.3:+13208738 | MS.gene67485:CDS |
AGGAAGAGGAGGAAGTTCGT+AGG | 0.548370 | 5.3:+13209824 | MS.gene67485:CDS |
AGTTCGTAGGGAAAACCAAT+GGG | 0.562143 | 5.3:+13209837 | MS.gene67485:CDS |
AAGTTCGTAGGGAAAACCAA+TGG | 0.564773 | 5.3:+13209836 | MS.gene67485:CDS |
CTGATCAACCTTCACGAACT+CGG | 0.567841 | 5.3:-13208765 | None:intergenic |
TTCCGATGGCGAGACCTTCG+AGG | 0.579603 | 5.3:+13208550 | MS.gene67485:CDS |
ATCACTCTCAAGAGTTCCGA+TGG | 0.585502 | 5.3:+13208536 | MS.gene67485:CDS |
TCTTGATGTTGAATGTCTTG+CGG | 0.592623 | 5.3:-13209786 | None:intergenic |
TTGGGATTCCGAGTTCGTGA+AGG | 0.596084 | 5.3:+13208757 | MS.gene67485:CDS |
GAAGACGATTGCGCTGACAG+TGG | 0.597220 | 5.3:+13208620 | MS.gene67485:CDS |
TTTCTCTCCAGAGGAAGAGG+AGG | 0.615178 | 5.3:+13209813 | MS.gene67485:CDS |
AACAGCTTCATCAACCTCGA+AGG | 0.615888 | 5.3:-13208564 | None:intergenic |
CAAGAATGATTTCTCTCCAG+AGG | 0.623448 | 5.3:+13209804 | MS.gene67485:CDS |
TACGAGCAAGATCTTGGCGA+AGG | 0.626440 | 5.3:+13208661 | MS.gene67485:CDS |
ACTGTTGCAGACATGATCAA+GGG | 0.659883 | 5.3:+13209745 | MS.gene67485:CDS |
TGCTGAAGACAAACCTAACG+AGG | 0.677963 | 5.3:+13208721 | MS.gene67485:CDS |
GATCAAGGGAAAGACACCAG+AGG | 0.742039 | 5.3:+13209759 | MS.gene67485:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTTTTTTTTTTTTTTAA+TGG | - | chr5.3:13209631-13209650 | None:intergenic | 0.0% |
!!! | ATGAATATATTATGTTTTGT+TGG | + | chr5.3:13209355-13209374 | MS.gene67485:intron | 15.0% |
!! | ATATATGCATATAAACTCAA+AGG | - | chr5.3:13209303-13209322 | None:intergenic | 20.0% |
!! | CATATATACGATACAAAAAT+GGG | + | chr5.3:13209316-13209335 | MS.gene67485:intron | 20.0% |
!! | CTGTTAATAATAAAGGATTA+GGG | + | chr5.3:13208967-13208986 | MS.gene67485:intron | 20.0% |
!! | TATTATTAACAGCTATACAT+AGG | - | chr5.3:13208959-13208978 | None:intergenic | 20.0% |
!! | TGTATAGCTGTTAATAATAA+AGG | + | chr5.3:13208960-13208979 | MS.gene67485:intron | 20.0% |
!!! | ATTTCAATTTGTCTTTTGTT+TGG | + | chr5.3:13209053-13209072 | MS.gene67485:intron | 20.0% |
!!! | GGCAAAATATATATTTTCAA+AGG | - | chr5.3:13209190-13209209 | None:intergenic | 20.0% |
!!! | TCGTTTATTTGATTTTGTTT+TGG | + | chr5.3:13208870-13208889 | MS.gene67485:intron | 20.0% |
!!! | TGATATTTTTTTTCCTTTGT+AGG | + | chr5.3:13209675-13209694 | MS.gene67485:intron | 20.0% |
!!! | TTGAATCGTTTATTTGATTT+GGG | + | chr5.3:13208837-13208856 | MS.gene67485:intron | 20.0% |
!!! | TTTCAATTTGTCTTTTGTTT+GGG | + | chr5.3:13209054-13209073 | MS.gene67485:intron | 20.0% |
! | GCATATATACGATACAAAAA+TGG | + | chr5.3:13209315-13209334 | MS.gene67485:intron | 25.0% |
! | GCTGTTAATAATAAAGGATT+AGG | + | chr5.3:13208966-13208985 | MS.gene67485:intron | 25.0% |
! | GTTGAATCGTTTATTTGATT+TGG | + | chr5.3:13208836-13208855 | MS.gene67485:intron | 25.0% |
! | TGAAAAATCTGAATAGTTTC+TGG | + | chr5.3:13208929-13208948 | MS.gene67485:intron | 25.0% |
! | TGAATCTAAAAGGAATCAAA+AGG | - | chr5.3:13209444-13209463 | None:intergenic | 25.0% |
! | TGATAACCAAATGATGAATA+TGG | + | chr5.3:13209520-13209539 | MS.gene67485:intron | 25.0% |
!! | AGAGATATTCTGTTTTCATT+TGG | + | chr5.3:13209242-13209261 | MS.gene67485:intron | 25.0% |
!! | ATTCCTTTTAGATTCAAACT+TGG | + | chr5.3:13209448-13209467 | MS.gene67485:intron | 25.0% |
!! | TAATAAAGGATTAGGGTTTT+TGG | + | chr5.3:13208974-13208993 | MS.gene67485:intron | 25.0% |
!! | TAATAATCCTATGTTTCTGA+TGG | + | chr5.3:13209585-13209604 | MS.gene67485:intron | 25.0% |
!! | TTTTAATGGCAATGAGTTTA+AGG | - | chr5.3:13209617-13209636 | None:intergenic | 25.0% |
!!! | ATTTTGTTTTGGAATGTTTG+GGG | + | chr5.3:13208881-13208900 | MS.gene67485:intron | 25.0% |
!!! | GATTTTGTTTTGGAATGTTT+GGG | + | chr5.3:13208880-13208899 | MS.gene67485:intron | 25.0% |
!!! | TGATTTTGTTTTGGAATGTT+TGG | + | chr5.3:13208879-13208898 | MS.gene67485:intron | 25.0% |
!!! | TTTGTTTGGGTTGAATTTAA+TGG | + | chr5.3:13209067-13209086 | MS.gene67485:intron | 25.0% |
!!! | TTTTTGTGTTATTGAGTTGT+AGG | + | chr5.3:13209131-13209150 | MS.gene67485:intron | 25.0% |
CAACCAAGTTTGAATCTAAA+AGG | - | chr5.3:13209454-13209473 | None:intergenic | 30.0% | |
GACAATCCATATTCATCATT+TGG | - | chr5.3:13209529-13209548 | None:intergenic | 30.0% | |
TGAGTTGTAGGATATTGTTA+TGG | + | chr5.3:13209143-13209162 | MS.gene67485:intron | 30.0% | |
! | ATCTCATCTTGGTAAGTTTT+GGG | + | chr5.3:13208801-13208820 | MS.gene67485:intron | 30.0% |
!! | GTTTGAATTGTTTGCTTTTG+TGG | + | chr5.3:13209103-13209122 | MS.gene67485:intron | 30.0% |
!!! | GTTTTGTTGGCTTATCTTTT+CGG | + | chr5.3:13209368-13209387 | MS.gene67485:intron | 30.0% |
!!! | TTTTGGTTTTGATTGAGCTA+TGG | + | chr5.3:13208991-13209010 | MS.gene67485:intron | 30.0% |
!!! | TTTTGTTTTGGAATGTTTGG+GGG | + | chr5.3:13208882-13208901 | MS.gene67485:intron | 30.0% |
AAACTTGAAGGTTTGAAAGG+GGG | + | chr5.3:13209212-13209231 | MS.gene67485:intron | 35.0% | |
CGAAACTTGAAGGTTTGAAA+GGG | + | chr5.3:13209210-13209229 | MS.gene67485:intron | 35.0% | |
GAAACTTGAAGGTTTGAAAG+GGG | + | chr5.3:13209211-13209230 | MS.gene67485:intron | 35.0% | |
GATGTAACCATCAGAAACAT+AGG | - | chr5.3:13209595-13209614 | None:intergenic | 35.0% | |
TCTTGATGTTGAATGTCTTG+CGG | - | chr5.3:13209789-13209808 | None:intergenic | 35.0% | |
! | ATATTTTGCCCGAAACTTGA+AGG | + | chr5.3:13209200-13209219 | MS.gene67485:intron | 35.0% |
! | CCTTTCAAACCTTCAAGTTT+CGG | - | chr5.3:13209212-13209231 | None:intergenic | 35.0% |
! | CTTTCAAACCTTCAAGTTTC+GGG | - | chr5.3:13209211-13209230 | None:intergenic | 35.0% |
! | GATCTCATCTTGGTAAGTTT+TGG | + | chr5.3:13208800-13208819 | MS.gene67485:intron | 35.0% |
!! | TACGCTTTTTGATCTCATCT+TGG | + | chr5.3:13208790-13208809 | MS.gene67485:CDS | 35.0% |
AAGATCTTGCTCGTAACGTT+GGG | - | chr5.3:13208656-13208675 | None:intergenic | 40.0% | |
AAGTAGTTAGCAGCCTACAA+AGG | - | chr5.3:13209691-13209710 | None:intergenic | 40.0% | |
AAGTTCGTAGGGAAAACCAA+TGG | + | chr5.3:13209836-13209855 | MS.gene67485:CDS | 40.0% | |
ACACCAGAAACCCCTAATTT+AGG | - | chr5.3:13208909-13208928 | None:intergenic | 40.0% | |
ACTGTTGCAGACATGATCAA+GGG | + | chr5.3:13209745-13209764 | MS.gene67485:CDS | 40.0% | |
AGTTCGTAGGGAAAACCAAT+GGG | + | chr5.3:13209837-13209856 | MS.gene67485:CDS | 40.0% | |
ATGTTTGGGGGTCCTAAATT+AGG | + | chr5.3:13208894-13208913 | MS.gene67485:intron | 40.0% | |
CAAGAATGATTTCTCTCCAG+AGG | + | chr5.3:13209804-13209823 | MS.gene67485:CDS | 40.0% | |
CCGAAACTTGAAGGTTTGAA+AGG | + | chr5.3:13209209-13209228 | MS.gene67485:intron | 40.0% | |
CTTGAATATCAAGAGCTTGC+TGG | + | chr5.3:13209708-13209727 | MS.gene67485:CDS | 40.0% | |
TGTTTGGGGGTCCTAAATTA+GGG | + | chr5.3:13208895-13208914 | MS.gene67485:intron | 40.0% | |
! | TGGATTGTCATTTCTCACGA+CGG | + | chr5.3:13209540-13209559 | MS.gene67485:intron | 40.0% |
AACAGCTTCATCAACCTCGA+AGG | - | chr5.3:13208567-13208586 | None:intergenic | 45.0% | |
ACGAGGATGAGCTTAAGTCT+TGG | + | chr5.3:13208738-13208757 | MS.gene67485:CDS | 45.0% | |
ATCACTCTCAAGAGTTCCGA+TGG | + | chr5.3:13208536-13208555 | MS.gene67485:CDS | 45.0% | |
CAACGTTACGAGCAAGATCT+TGG | + | chr5.3:13208655-13208674 | MS.gene67485:CDS | 45.0% | |
CAAGATCTTGCTCGTAACGT+TGG | - | chr5.3:13208657-13208676 | None:intergenic | 45.0% | |
CGAGGATGAGCTTAAGTCTT+GGG | + | chr5.3:13208739-13208758 | MS.gene67485:CDS | 45.0% | |
CTGATCAACCTTCACGAACT+CGG | - | chr5.3:13208768-13208787 | None:intergenic | 45.0% | |
GACTGTTGCAGACATGATCA+AGG | + | chr5.3:13209744-13209763 | MS.gene67485:CDS | 45.0% | |
GACTTAAGCTCATCCTCGTT+AGG | - | chr5.3:13208737-13208756 | None:intergenic | 45.0% | |
GGTCCTAAATTAGGGGTTTC+TGG | + | chr5.3:13208903-13208922 | MS.gene67485:intron | 45.0% | |
GTTTGGGGGTCCTAAATTAG+GGG | + | chr5.3:13208896-13208915 | MS.gene67485:intron | 45.0% | |
TGATCATGTCTGCAACAGTC+TGG | - | chr5.3:13209744-13209763 | None:intergenic | 45.0% | |
TGATTTCTCTCCAGAGGAAG+AGG | + | chr5.3:13209810-13209829 | MS.gene67485:CDS | 45.0% | |
TGCTGAAGACAAACCTAACG+AGG | + | chr5.3:13208721-13208740 | MS.gene67485:CDS | 45.0% | |
!! | GGTTGATGAAGCTGTTGCTT+TGG | + | chr5.3:13208571-13208590 | MS.gene67485:CDS | 45.0% |
AATGTCTTGCGGATCTCCTC+TGG | - | chr5.3:13209778-13209797 | None:intergenic | 50.0% | |
AGGAAGAGGAGGAAGTTCGT+AGG | + | chr5.3:13209824-13209843 | MS.gene67485:CDS | 50.0% | |
GATCAAGGGAAAGACACCAG+AGG | + | chr5.3:13209759-13209778 | MS.gene67485:CDS | 50.0% | |
GGAAGAGGAGGAAGTTCGTA+GGG | + | chr5.3:13209825-13209844 | MS.gene67485:CDS | 50.0% | |
TACGAGCAAGATCTTGGCGA+AGG | + | chr5.3:13208661-13208680 | MS.gene67485:CDS | 50.0% | |
TGCTCGTAACGTTGGGAAGA+GGG | - | chr5.3:13208649-13208668 | None:intergenic | 50.0% | |
TTGCTCGTAACGTTGGGAAG+AGG | - | chr5.3:13208650-13208669 | None:intergenic | 50.0% | |
TTGGGATTCCGAGTTCGTGA+AGG | + | chr5.3:13208757-13208776 | MS.gene67485:CDS | 50.0% | |
TTTCTCTCCAGAGGAAGAGG+AGG | + | chr5.3:13209813-13209832 | MS.gene67485:CDS | 50.0% | |
! | CGAGTTCGTGAAGGTTGATC+AGG | + | chr5.3:13208766-13208785 | MS.gene67485:CDS | 50.0% |
AACCTCGAAGGTCTCGCCAT+CGG | - | chr5.3:13208555-13208574 | None:intergenic | 55.0% | |
CATGTCTGCAACAGTCTGGC+AGG | - | chr5.3:13209740-13209759 | None:intergenic | 55.0% | |
CGAACTTCCTCCTCTTCCTC+TGG | - | chr5.3:13209823-13209842 | None:intergenic | 55.0% | |
! | GAAGACGATTGCGCTGACAG+TGG | + | chr5.3:13208620-13208639 | MS.gene67485:CDS | 55.0% |
TTCCGATGGCGAGACCTTCG+AGG | + | chr5.3:13208550-13208569 | MS.gene67485:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 13208518 | 13209870 | 13208518 | ID=MS.gene67485 |
chr5.3 | mRNA | 13208518 | 13209870 | 13208518 | ID=MS.gene67485.t1;Parent=MS.gene67485 |
chr5.3 | exon | 13208518 | 13208811 | 13208518 | ID=MS.gene67485.t1.exon1;Parent=MS.gene67485.t1 |
chr5.3 | CDS | 13208518 | 13208811 | 13208518 | ID=cds.MS.gene67485.t1;Parent=MS.gene67485.t1 |
chr5.3 | exon | 13209697 | 13209870 | 13209697 | ID=MS.gene67485.t1.exon2;Parent=MS.gene67485.t1 |
chr5.3 | CDS | 13209697 | 13209870 | 13209697 | ID=cds.MS.gene67485.t1;Parent=MS.gene67485.t1 |
Gene Sequence |
Protein sequence |