Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59505.t1 | XP_003612227.1 | 98.7 | 155 | 2 | 0 | 1 | 155 | 1 | 155 | 4.70E-78 | 300.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59505.t1 | Q9FHW7 | 76.6 | 171 | 24 | 1 | 1 | 155 | 1 | 171 | 4.6e-66 | 251.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59505.t1 | Q155U2 | 98.7 | 155 | 2 | 0 | 1 | 155 | 1 | 155 | 3.4e-78 | 300.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049129 | MS.gene59505 | -0.843912 | 1.05E-58 | -1.69E-46 |
| MS.gene04918 | MS.gene59505 | 0.802727 | 4.89E-49 | -1.69E-46 |
| MS.gene04920 | MS.gene59505 | 0.803867 | 2.84E-49 | -1.69E-46 |
| MS.gene049255 | MS.gene59505 | 0.803307 | 3.71E-49 | -1.69E-46 |
| MS.gene049283 | MS.gene59505 | 0.836079 | 1.15E-56 | -1.69E-46 |
| MS.gene049411 | MS.gene59505 | 0.848326 | 6.58E-60 | -1.69E-46 |
| MS.gene049580 | MS.gene59505 | 0.802843 | 4.63E-49 | -1.69E-46 |
| MS.gene049653 | MS.gene59505 | 0.807648 | 4.56E-50 | -1.69E-46 |
| MS.gene049674 | MS.gene59505 | 0.802548 | 5.32E-49 | -1.69E-46 |
| MS.gene049680 | MS.gene59505 | 0.87643 | 1.41E-68 | -1.69E-46 |
| MS.gene049951 | MS.gene59505 | 0.818148 | 2.28E-52 | -1.69E-46 |
| MS.gene050085 | MS.gene59505 | 0.802114 | 6.54E-49 | -1.69E-46 |
| MS.gene050277 | MS.gene59505 | 0.813107 | 3.03E-51 | -1.69E-46 |
| MS.gene05029 | MS.gene59505 | 0.857588 | 1.47E-62 | -1.69E-46 |
| MS.gene050320 | MS.gene59505 | 0.829542 | 4.86E-55 | -1.69E-46 |
| MS.gene050386 | MS.gene59505 | 0.805233 | 1.47E-49 | -1.69E-46 |
| MS.gene050437 | MS.gene59505 | 0.818592 | 1.81E-52 | -1.69E-46 |
| MS.gene050646 | MS.gene59505 | 0.813922 | 2.00E-51 | -1.69E-46 |
| MS.gene050689 | MS.gene59505 | 0.823345 | 1.46E-53 | -1.69E-46 |
| MS.gene050752 | MS.gene59505 | 0.914512 | 1.76E-84 | -1.69E-46 |
| MS.gene050838 | MS.gene59505 | 0.827933 | 1.19E-54 | -1.69E-46 |
| MS.gene050945 | MS.gene59505 | 0.877326 | 6.87E-69 | -1.69E-46 |
| MS.gene050955 | MS.gene59505 | 0.90766 | 3.98E-81 | -1.69E-46 |
| MS.gene051003 | MS.gene59505 | 0.890932 | 6.30E-74 | -1.69E-46 |
| MS.gene051043 | MS.gene59505 | 0.81794 | 2.54E-52 | -1.69E-46 |
| MS.gene051233 | MS.gene59505 | 0.806203 | 9.22E-50 | -1.69E-46 |
| MS.gene051234 | MS.gene59505 | 0.870092 | 1.89E-66 | -1.69E-46 |
| MS.gene051343 | MS.gene59505 | 0.87114 | 8.57E-67 | -1.69E-46 |
| MS.gene05134 | MS.gene59505 | 0.819592 | 1.07E-52 | -1.69E-46 |
| MS.gene051597 | MS.gene59505 | 0.819497 | 1.13E-52 | -1.69E-46 |
| MS.gene051676 | MS.gene59505 | 0.806225 | 9.12E-50 | -1.69E-46 |
| MS.gene051699 | MS.gene59505 | 0.821954 | 3.07E-53 | -1.69E-46 |
| MS.gene051748 | MS.gene59505 | 0.802742 | 4.86E-49 | -1.69E-46 |
| MS.gene05188 | MS.gene59505 | 0.823056 | 1.70E-53 | -1.69E-46 |
| MS.gene051902 | MS.gene59505 | 0.832349 | 9.95E-56 | -1.69E-46 |
| MS.gene051903 | MS.gene59505 | 0.855936 | 4.52E-62 | -1.69E-46 |
| MS.gene051975 | MS.gene59505 | 0.872991 | 2.08E-67 | -1.69E-46 |
| MS.gene052072 | MS.gene59505 | 0.871814 | 5.13E-67 | -1.69E-46 |
| MS.gene052296 | MS.gene59505 | 0.812373 | 4.38E-51 | -1.69E-46 |
| MS.gene052434 | MS.gene59505 | 0.804243 | 2.37E-49 | -1.69E-46 |
| MS.gene052479 | MS.gene59505 | 0.83301 | 6.82E-56 | -1.69E-46 |
| MS.gene052533 | MS.gene59505 | 0.813498 | 2.48E-51 | -1.69E-46 |
| MS.gene052793 | MS.gene59505 | 0.807379 | 5.20E-50 | -1.69E-46 |
| MS.gene052947 | MS.gene59505 | 0.840176 | 1.02E-57 | -1.69E-46 |
| MS.gene053045 | MS.gene59505 | 0.812984 | 3.22E-51 | -1.69E-46 |
| MS.gene053058 | MS.gene59505 | 0.86538 | 6.16E-65 | -1.69E-46 |
| MS.gene053109 | MS.gene59505 | 0.803036 | 4.22E-49 | -1.69E-46 |
| MS.gene053228 | MS.gene59505 | 0.800036 | 1.74E-48 | -1.69E-46 |
| MS.gene053298 | MS.gene59505 | 0.8116 | 6.45E-51 | -1.69E-46 |
| MS.gene053401 | MS.gene59505 | 0.800947 | 1.13E-48 | -1.69E-46 |
| MS.gene053564 | MS.gene59505 | 0.837934 | 3.88E-57 | -1.69E-46 |
| MS.gene053879 | MS.gene59505 | 0.835846 | 1.32E-56 | -1.69E-46 |
| MS.gene053931 | MS.gene59505 | 0.823714 | 1.19E-53 | -1.69E-46 |
| MS.gene053952 | MS.gene59505 | 0.823142 | 1.62E-53 | -1.69E-46 |
| MS.gene053963 | MS.gene59505 | 0.810536 | 1.10E-50 | -1.69E-46 |
| MS.gene054004 | MS.gene59505 | 0.869339 | 3.33E-66 | -1.69E-46 |
| MS.gene054005 | MS.gene59505 | 0.821161 | 4.68E-53 | -1.69E-46 |
| MS.gene054403 | MS.gene59505 | 0.917888 | 3.06E-86 | -1.69E-46 |
| MS.gene054413 | MS.gene59505 | 0.857935 | 1.16E-62 | -1.69E-46 |
| MS.gene05469 | MS.gene59505 | 0.85139 | 9.16E-61 | -1.69E-46 |
| MS.gene054957 | MS.gene59505 | 0.817104 | 3.92E-52 | -1.69E-46 |
| MS.gene055150 | MS.gene59505 | 0.823503 | 1.34E-53 | -1.69E-46 |
| MS.gene05517 | MS.gene59505 | 0.816837 | 4.50E-52 | -1.69E-46 |
| MS.gene055555 | MS.gene59505 | 0.820745 | 5.83E-53 | -1.69E-46 |
| MS.gene055765 | MS.gene59505 | 0.813366 | 2.65E-51 | -1.69E-46 |
| MS.gene055841 | MS.gene59505 | 0.803279 | 3.76E-49 | -1.69E-46 |
| MS.gene056071 | MS.gene59505 | 0.819558 | 1.09E-52 | -1.69E-46 |
| MS.gene056181 | MS.gene59505 | 0.808931 | 2.43E-50 | -1.69E-46 |
| MS.gene056631 | MS.gene59505 | 0.809641 | 1.71E-50 | -1.69E-46 |
| MS.gene056699 | MS.gene59505 | 0.831995 | 1.22E-55 | -1.69E-46 |
| MS.gene056787 | MS.gene59505 | 0.811424 | 7.05E-51 | -1.69E-46 |
| MS.gene056986 | MS.gene59505 | 0.879537 | 1.15E-69 | -1.69E-46 |
| MS.gene057094 | MS.gene59505 | 0.812279 | 4.59E-51 | -1.69E-46 |
| MS.gene057102 | MS.gene59505 | 0.866057 | 3.77E-65 | -1.69E-46 |
| MS.gene057234 | MS.gene59505 | 0.82559 | 4.31E-54 | -1.69E-46 |
| MS.gene057392 | MS.gene59505 | 0.829152 | 6.04E-55 | -1.69E-46 |
| MS.gene057622 | MS.gene59505 | 0.817883 | 2.62E-52 | -1.69E-46 |
| MS.gene057694 | MS.gene59505 | 0.831409 | 1.70E-55 | -1.69E-46 |
| MS.gene057705 | MS.gene59505 | 0.872441 | 3.17E-67 | -1.69E-46 |
| MS.gene05781 | MS.gene59505 | 0.853812 | 1.87E-61 | -1.69E-46 |
| MS.gene057890 | MS.gene59505 | -0.804079 | 2.57E-49 | -1.69E-46 |
| MS.gene057999 | MS.gene59505 | 0.89811 | 7.32E-77 | -1.69E-46 |
| MS.gene058008 | MS.gene59505 | 0.805724 | 1.16E-49 | -1.69E-46 |
| MS.gene058054 | MS.gene59505 | 0.808511 | 2.99E-50 | -1.69E-46 |
| MS.gene058055 | MS.gene59505 | 0.8046 | 2.00E-49 | -1.69E-46 |
| MS.gene058074 | MS.gene59505 | 0.843951 | 1.02E-58 | -1.69E-46 |
| MS.gene058159 | MS.gene59505 | 0.804137 | 2.50E-49 | -1.69E-46 |
| MS.gene058238 | MS.gene59505 | 0.833544 | 5.02E-56 | -1.69E-46 |
| MS.gene058245 | MS.gene59505 | 0.811064 | 8.44E-51 | -1.69E-46 |
| MS.gene058261 | MS.gene59505 | 0.810822 | 9.52E-51 | -1.69E-46 |
| MS.gene058592 | MS.gene59505 | 0.810884 | 9.23E-51 | -1.69E-46 |
| MS.gene059146 | MS.gene59505 | 0.909823 | 3.72E-82 | -1.69E-46 |
| MS.gene059227 | MS.gene59505 | 0.813986 | 1.94E-51 | -1.69E-46 |
| MS.gene05952 | MS.gene59505 | 0.810812 | 9.57E-51 | -1.69E-46 |
| MS.gene059802 | MS.gene59505 | 0.818123 | 2.31E-52 | -1.69E-46 |
| MS.gene059830 | MS.gene59505 | 0.803758 | 2.99E-49 | -1.69E-46 |
| MS.gene05985 | MS.gene59505 | -0.857263 | 1.84E-62 | -1.69E-46 |
| MS.gene059901 | MS.gene59505 | -0.842421 | 2.61E-58 | -1.69E-46 |
| MS.gene06011 | MS.gene59505 | 0.850157 | 2.04E-60 | -1.69E-46 |
| MS.gene06018 | MS.gene59505 | 0.821961 | 3.06E-53 | -1.69E-46 |
| MS.gene060244 | MS.gene59505 | 0.843405 | 1.43E-58 | -1.69E-46 |
| MS.gene060365 | MS.gene59505 | 0.813757 | 2.18E-51 | -1.69E-46 |
| MS.gene060763 | MS.gene59505 | 0.854274 | 1.37E-61 | -1.69E-46 |
| MS.gene060935 | MS.gene59505 | 0.836119 | 1.13E-56 | -1.69E-46 |
| MS.gene060937 | MS.gene59505 | 0.836441 | 9.34E-57 | -1.69E-46 |
| MS.gene061100 | MS.gene59505 | 0.805809 | 1.12E-49 | -1.69E-46 |
| MS.gene06118 | MS.gene59505 | 0.817491 | 3.21E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene59505 | MS.gene25471 | PPI |
| MS.gene59505 | MS.gene79720 | PPI |
| MS.gene59505 | MS.gene33667 | PPI |
| MS.gene59505 | MS.gene068281 | PPI |
| MS.gene59505 | MS.gene33411 | PPI |
| MS.gene59505 | MS.gene98172 | PPI |
| MS.gene92141 | MS.gene59505 | PPI |
| MS.gene59505 | MS.gene34691 | PPI |
| MS.gene25469 | MS.gene59505 | PPI |
| MS.gene59505 | MS.gene055864 | PPI |
| MS.gene047254 | MS.gene59505 | PPI |
| MS.gene59505 | MS.gene004511 | PPI |
| MS.gene24959 | MS.gene59505 | PPI |
| MS.gene00939 | MS.gene59505 | PPI |
| MS.gene59505 | MS.gene002824 | PPI |
| MS.gene59505 | MS.gene35971 | PPI |
| MS.gene59505 | MS.gene59610 | PPI |
| MS.gene79719 | MS.gene59505 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59505.t1 | MTR_5g022730 | 98.710 | 155 | 2 | 0 | 1 | 155 | 1 | 155 | 1.03e-111 | 313 |
| MS.gene59505.t1 | MTR_5g022710 | 96.774 | 155 | 5 | 0 | 1 | 155 | 1 | 155 | 6.84e-110 | 309 |
| MS.gene59505.t1 | MTR_7g021400 | 86.364 | 154 | 21 | 0 | 2 | 155 | 3 | 156 | 4.75e-91 | 261 |
| MS.gene59505.t1 | MTR_7g094150 | 86.538 | 156 | 20 | 1 | 1 | 155 | 1 | 156 | 1.83e-89 | 257 |
| MS.gene59505.t1 | MTR_7g094170 | 84.416 | 154 | 24 | 0 | 2 | 155 | 3 | 156 | 4.50e-88 | 254 |
| MS.gene59505.t1 | MTR_4g032400 | 78.710 | 155 | 32 | 1 | 2 | 155 | 9 | 163 | 2.37e-85 | 247 |
| MS.gene59505.t1 | MTR_7g021380 | 82.468 | 154 | 27 | 0 | 2 | 155 | 3 | 156 | 4.70e-84 | 244 |
| MS.gene59505.t1 | MTR_4g032450 | 75.484 | 155 | 37 | 1 | 2 | 155 | 21 | 175 | 4.71e-84 | 244 |
| MS.gene59505.t1 | MTR_3g110048 | 76.282 | 156 | 35 | 1 | 2 | 155 | 3 | 158 | 4.76e-84 | 244 |
| MS.gene59505.t1 | MTR_7g094120 | 74.359 | 156 | 38 | 1 | 2 | 155 | 4 | 159 | 8.51e-83 | 241 |
| MS.gene59505.t1 | MTR_5g085030 | 72.903 | 155 | 41 | 1 | 1 | 154 | 1 | 155 | 1.45e-78 | 230 |
| MS.gene59505.t1 | MTR_8g056060 | 74.194 | 155 | 39 | 1 | 2 | 155 | 3 | 157 | 2.83e-78 | 229 |
| MS.gene59505.t1 | MTR_7g094280 | 72.152 | 158 | 41 | 2 | 1 | 155 | 1 | 158 | 5.71e-78 | 228 |
| MS.gene59505.t1 | MTR_8g468480 | 70.513 | 156 | 45 | 1 | 1 | 155 | 1 | 156 | 1.95e-77 | 227 |
| MS.gene59505.t1 | MTR_4g032460 | 73.077 | 156 | 35 | 2 | 1 | 155 | 1 | 150 | 8.58e-72 | 213 |
| MS.gene59505.t1 | MTR_4g032510 | 69.677 | 155 | 39 | 3 | 3 | 155 | 5 | 153 | 1.75e-71 | 212 |
| MS.gene59505.t1 | MTR_7g094310 | 68.987 | 158 | 36 | 3 | 1 | 155 | 1 | 148 | 2.42e-70 | 209 |
| MS.gene59505.t1 | MTR_4g032500 | 67.097 | 155 | 44 | 2 | 2 | 155 | 4 | 152 | 1.74e-69 | 207 |
| MS.gene59505.t1 | MTR_5g082340 | 67.308 | 156 | 39 | 2 | 1 | 155 | 1 | 145 | 1.73e-65 | 196 |
| MS.gene59505.t1 | MTR_4g033455 | 61.039 | 154 | 60 | 0 | 2 | 155 | 7 | 160 | 2.18e-65 | 197 |
| MS.gene59505.t1 | MTR_4g017860 | 54.872 | 195 | 45 | 3 | 4 | 155 | 26 | 220 | 1.87e-63 | 194 |
| MS.gene59505.t1 | MTR_1g099870 | 84.314 | 102 | 14 | 1 | 56 | 155 | 2 | 103 | 7.17e-59 | 178 |
| MS.gene59505.t1 | MTR_4g033460 | 60.714 | 140 | 55 | 0 | 2 | 141 | 7 | 146 | 8.95e-59 | 183 |
| MS.gene59505.t1 | MTR_4g033460 | 60.215 | 93 | 29 | 1 | 40 | 132 | 161 | 245 | 1.86e-30 | 110 |
| MS.gene59505.t1 | MTR_4g021390 | 59.091 | 154 | 60 | 1 | 2 | 155 | 5 | 155 | 1.67e-58 | 179 |
| MS.gene59505.t1 | MTR_8g089730 | 69.919 | 123 | 20 | 1 | 33 | 155 | 1 | 106 | 2.96e-50 | 156 |
| MS.gene59505.t1 | MTR_7g094320 | 55.414 | 157 | 28 | 2 | 1 | 155 | 1 | 117 | 4.05e-47 | 149 |
| MS.gene59505.t1 | MTR_4g032420 | 61.417 | 127 | 34 | 3 | 30 | 155 | 38 | 150 | 6.43e-47 | 149 |
| MS.gene59505.t1 | MTR_4g032470 | 51.370 | 146 | 27 | 2 | 11 | 155 | 32 | 134 | 1.19e-43 | 140 |
| MS.gene59505.t1 | MTR_7g006370 | 55.000 | 140 | 54 | 2 | 2 | 141 | 5 | 135 | 1.55e-43 | 140 |
| MS.gene59505.t1 | MTR_4g131980 | 65.000 | 120 | 36 | 3 | 1 | 118 | 1 | 116 | 1.18e-41 | 136 |
| MS.gene59505.t1 | MTR_4g127240 | 66.990 | 103 | 28 | 4 | 39 | 139 | 26 | 124 | 1.89e-40 | 132 |
| MS.gene59505.t1 | MTR_7g094410 | 53.247 | 154 | 30 | 4 | 2 | 113 | 3 | 156 | 3.34e-40 | 133 |
| MS.gene59505.t1 | MTR_7g094360 | 46.512 | 172 | 38 | 4 | 1 | 118 | 1 | 172 | 2.12e-38 | 129 |
| MS.gene59505.t1 | MTR_8g056090 | 49.351 | 154 | 45 | 6 | 2 | 153 | 3 | 125 | 8.07e-36 | 120 |
| MS.gene59505.t1 | MTR_4g119422 | 50.000 | 146 | 66 | 2 | 2 | 145 | 228 | 368 | 1.75e-35 | 126 |
| MS.gene59505.t1 | MTR_1g112590 | 39.355 | 155 | 78 | 2 | 7 | 145 | 1 | 155 | 1.63e-32 | 113 |
| MS.gene59505.t1 | MTR_7g071200 | 71.014 | 69 | 19 | 1 | 88 | 155 | 4 | 72 | 1.22e-28 | 100 |
| MS.gene59505.t1 | MTR_2g066010 | 41.722 | 151 | 76 | 5 | 7 | 154 | 20 | 161 | 2.99e-27 | 101 |
| MS.gene59505.t1 | MTR_4g032520 | 44.444 | 144 | 38 | 4 | 28 | 153 | 1 | 120 | 4.23e-27 | 99.0 |
| MS.gene59505.t1 | MTR_2g065720 | 41.060 | 151 | 77 | 5 | 7 | 154 | 37 | 178 | 3.84e-26 | 98.6 |
| MS.gene59505.t1 | MTR_5g096950 | 36.538 | 156 | 80 | 3 | 3 | 154 | 2 | 142 | 2.69e-23 | 89.7 |
| MS.gene59505.t1 | MTR_7g094350 | 48.598 | 107 | 33 | 2 | 2 | 108 | 3 | 87 | 2.74e-23 | 90.9 |
| MS.gene59505.t1 | MTR_7g094350 | 51.685 | 89 | 39 | 3 | 47 | 134 | 102 | 187 | 7.52e-20 | 82.0 |
| MS.gene59505.t1 | MTR_4g032540 | 65.079 | 63 | 21 | 1 | 89 | 150 | 70 | 132 | 4.53e-23 | 88.6 |
| MS.gene59505.t1 | MTR_2g018980 | 34.667 | 150 | 85 | 3 | 7 | 155 | 3 | 140 | 2.59e-22 | 87.0 |
| MS.gene59505.t1 | MTR_1g042510 | 35.256 | 156 | 63 | 4 | 7 | 145 | 1 | 135 | 4.45e-22 | 89.7 |
| MS.gene59505.t1 | MTR_1g112570 | 36.691 | 139 | 63 | 4 | 7 | 127 | 1 | 132 | 1.06e-20 | 85.9 |
| MS.gene59505.t1 | MTR_5g078680 | 32.051 | 156 | 68 | 3 | 7 | 145 | 1 | 135 | 2.08e-19 | 82.0 |
| MS.gene59505.t1 | MTR_6g053620 | 36.806 | 144 | 81 | 5 | 7 | 145 | 17 | 155 | 3.25e-19 | 82.8 |
| MS.gene59505.t1 | MTR_6g053620 | 36.806 | 144 | 81 | 5 | 7 | 145 | 17 | 155 | 3.69e-19 | 82.8 |
| MS.gene59505.t1 | MTR_8g007195 | 34.286 | 140 | 80 | 4 | 9 | 142 | 13 | 146 | 2.17e-18 | 80.1 |
| MS.gene59505.t1 | MTR_7g077810 | 34.722 | 144 | 84 | 4 | 7 | 145 | 18 | 156 | 7.62e-18 | 79.0 |
| MS.gene59505.t1 | MTR_8g007185 | 32.877 | 146 | 87 | 4 | 7 | 146 | 11 | 151 | 7.42e-17 | 75.9 |
| MS.gene59505.t1 | MTR_2g100830 | 33.793 | 145 | 80 | 5 | 9 | 145 | 13 | 149 | 7.90e-17 | 75.9 |
| MS.gene59505.t1 | MTR_2g100825 | 32.867 | 143 | 87 | 4 | 7 | 145 | 11 | 148 | 1.32e-16 | 75.1 |
| MS.gene59505.t1 | MTR_8g007205 | 32.877 | 146 | 87 | 4 | 7 | 146 | 11 | 151 | 1.33e-16 | 75.1 |
| MS.gene59505.t1 | MTR_7g036780 | 32.609 | 138 | 83 | 5 | 2 | 134 | 4 | 136 | 3.46e-15 | 70.5 |
| MS.gene59505.t1 | MTR_4g131910 | 39.286 | 112 | 58 | 2 | 4 | 111 | 133 | 238 | 1.23e-14 | 68.9 |
| MS.gene59505.t1 | MTR_8g030670 | 30.345 | 145 | 91 | 3 | 9 | 148 | 20 | 159 | 2.10e-14 | 69.3 |
| MS.gene59505.t1 | MTR_3g061700 | 33.684 | 95 | 56 | 2 | 52 | 145 | 1 | 89 | 1.85e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59505.t1 | AT5G42190 | 76.608 | 171 | 24 | 1 | 1 | 155 | 1 | 171 | 7.00e-86 | 249 |
| MS.gene59505.t1 | AT1G75950 | 78.616 | 159 | 28 | 1 | 3 | 155 | 2 | 160 | 1.67e-83 | 243 |
| MS.gene59505.t1 | AT1G20140 | 73.006 | 163 | 36 | 3 | 1 | 155 | 1 | 163 | 2.22e-82 | 240 |
| MS.gene59505.t1 | AT2G25700 | 69.325 | 163 | 42 | 3 | 1 | 155 | 1 | 163 | 9.93e-78 | 228 |
| MS.gene59505.t1 | AT4G34210 | 70.779 | 154 | 41 | 2 | 3 | 155 | 2 | 152 | 9.14e-77 | 225 |
| MS.gene59505.t1 | AT4G34470 | 70.130 | 154 | 42 | 2 | 3 | 155 | 2 | 152 | 5.40e-76 | 223 |
| MS.gene59505.t1 | AT3G21860 | 67.742 | 155 | 44 | 3 | 3 | 155 | 2 | 152 | 2.03e-68 | 204 |
| MS.gene59505.t1 | AT3G21850 | 65.161 | 155 | 49 | 3 | 3 | 155 | 2 | 153 | 3.17e-67 | 201 |
| MS.gene59505.t1 | AT3G60010 | 64.331 | 157 | 47 | 3 | 4 | 155 | 2 | 154 | 2.04e-66 | 199 |
| MS.gene59505.t1 | AT2G03170 | 62.987 | 154 | 50 | 2 | 3 | 155 | 2 | 149 | 9.10e-64 | 192 |
| MS.gene59505.t1 | AT2G03190 | 56.024 | 166 | 60 | 3 | 3 | 155 | 2 | 167 | 2.63e-59 | 182 |
| MS.gene59505.t1 | AT3G60020 | 56.962 | 158 | 56 | 3 | 4 | 155 | 2 | 153 | 7.07e-57 | 175 |
| MS.gene59505.t1 | AT3G21830 | 57.143 | 154 | 62 | 2 | 3 | 155 | 2 | 152 | 3.27e-56 | 173 |
| MS.gene59505.t1 | AT2G03160 | 49.206 | 189 | 60 | 3 | 3 | 155 | 2 | 190 | 4.57e-56 | 174 |
| MS.gene59505.t1 | AT2G20160 | 55.556 | 153 | 62 | 2 | 3 | 154 | 2 | 149 | 8.86e-54 | 167 |
| MS.gene59505.t1 | AT3G25650 | 57.831 | 166 | 57 | 5 | 3 | 155 | 2 | 167 | 1.35e-53 | 167 |
| MS.gene59505.t1 | AT1G10230 | 57.419 | 155 | 63 | 2 | 3 | 154 | 2 | 156 | 2.13e-52 | 164 |
| MS.gene59505.t1 | AT3G21840 | 59.167 | 120 | 43 | 3 | 3 | 120 | 2 | 117 | 6.22e-38 | 126 |
| MS.gene59505.t1 | AT3G53060 | 66.279 | 86 | 22 | 3 | 28 | 112 | 1 | 80 | 7.63e-32 | 109 |
| MS.gene59505.t1 | AT3G61415 | 34.028 | 144 | 85 | 5 | 7 | 145 | 18 | 156 | 2.37e-16 | 74.7 |
| MS.gene59505.t1 | AT3G61415 | 33.333 | 144 | 86 | 4 | 7 | 145 | 18 | 156 | 2.47e-16 | 74.7 |
| MS.gene59505.t1 | AT2G45950 | 31.944 | 144 | 88 | 4 | 7 | 145 | 18 | 156 | 3.31e-16 | 74.3 |
| MS.gene59505.t1 | AT2G45950 | 31.944 | 144 | 88 | 4 | 7 | 145 | 18 | 156 | 3.31e-16 | 74.3 |
| MS.gene59505.t1 | AT2G45950 | 31.944 | 144 | 88 | 4 | 7 | 145 | 18 | 156 | 3.89e-16 | 74.3 |
| MS.gene59505.t1 | AT2G45950 | 31.944 | 144 | 88 | 4 | 7 | 145 | 18 | 156 | 3.89e-16 | 74.3 |
| MS.gene59505.t1 | AT2G45950 | 31.944 | 144 | 88 | 4 | 7 | 145 | 18 | 156 | 3.89e-16 | 74.3 |
Find 34 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACGTTACGAGCAAGATCT+TGG | 0.349619 | 5.4:+14163767 | MS.gene59505:CDS |
| CTTGAATATCAAGAGCTTGC+TGG | 0.389953 | 5.4:+14164871 | MS.gene59505:CDS |
| CGAGGATGAGCTTAAGTCTT+GGG | 0.409245 | 5.4:+14163851 | MS.gene59505:CDS |
| AAGATCTTGCTCGTAACGTT+GGG | 0.435888 | 5.4:-14163765 | None:intergenic |
| CGAGTTCGTGAAGGTTGATC+AGG | 0.440775 | 5.4:+14163878 | MS.gene59505:CDS |
| GGTTGATGAAGCTGTTGCTT+TGG | 0.442319 | 5.4:+14163683 | MS.gene59505:CDS |
| AATGTCTTGCGGATCTCCTC+TGG | 0.448832 | 5.4:-14164938 | None:intergenic |
| GACTTAAGCTCATCCTCGTT+AGG | 0.455978 | 5.4:-14163846 | None:intergenic |
| TGATCATGTCTGCAACAGTC+TGG | 0.461006 | 5.4:-14164904 | None:intergenic |
| CGAACTTCCTCCTCTTCCTC+TGG | 0.494352 | 5.4:-14164983 | None:intergenic |
| CATGTCTGCAACAGTCTGGC+AGG | 0.496105 | 5.4:-14164900 | None:intergenic |
| CAAGATCTTGCTCGTAACGT+TGG | 0.499561 | 5.4:-14163766 | None:intergenic |
| TGCTCGTAACGTTGGGAAGA+GGG | 0.510548 | 5.4:-14163758 | None:intergenic |
| TGATTTCTCTCCAGAGGAAG+AGG | 0.513536 | 5.4:+14164973 | MS.gene59505:CDS |
| GACTGTTGCAGACATGATCA+AGG | 0.534990 | 5.4:+14164907 | MS.gene59505:CDS |
| TTGCTCGTAACGTTGGGAAG+AGG | 0.535258 | 5.4:-14163759 | None:intergenic |
| AACCTCGAAGGTCTCGCCAT+CGG | 0.535779 | 5.4:-14163664 | None:intergenic |
| GGAAGAGGAGGAAGTTCGTA+GGG | 0.537389 | 5.4:+14164988 | MS.gene59505:CDS |
| ATAATCATTCAAATGCCCAT+TGG | 0.538622 | 5.4:-14165015 | None:intergenic |
| ACGAGGATGAGCTTAAGTCT+TGG | 0.544399 | 5.4:+14163850 | MS.gene59505:CDS |
| AGGAAGAGGAGGAAGTTCGT+AGG | 0.548370 | 5.4:+14164987 | MS.gene59505:CDS |
| AGTTCGTAGGGAAAACCAAT+GGG | 0.562143 | 5.4:+14165000 | MS.gene59505:CDS |
| AAGTTCGTAGGGAAAACCAA+TGG | 0.564773 | 5.4:+14164999 | MS.gene59505:CDS |
| CTGATCAACCTTCACGAACT+CGG | 0.567841 | 5.4:-14163877 | None:intergenic |
| TTCCGATGGCGAGACCTTCG+AGG | 0.579603 | 5.4:+14163662 | MS.gene59505:CDS |
| ATCACTCTCAAGAGTTCCGA+TGG | 0.585502 | 5.4:+14163648 | MS.gene59505:CDS |
| TTGGGATTCCGAGTTCGTGA+AGG | 0.596084 | 5.4:+14163869 | MS.gene59505:CDS |
| GAAGACGATTGCGCTGACAG+TGG | 0.597220 | 5.4:+14163732 | MS.gene59505:CDS |
| TTTCTCTCCAGAGGAAGAGG+AGG | 0.615178 | 5.4:+14164976 | MS.gene59505:CDS |
| AACAGCTTCATCAACCTCGA+AGG | 0.615888 | 5.4:-14163676 | None:intergenic |
| TACGAGCAAGATCTTGGCGA+AGG | 0.626440 | 5.4:+14163773 | MS.gene59505:CDS |
| ACTGTTGCAGACATGATCAA+GGG | 0.659883 | 5.4:+14164908 | MS.gene59505:CDS |
| TGCTGAAGACAAACCTAACG+AGG | 0.677963 | 5.4:+14163833 | MS.gene59505:CDS |
| GATCAAGGGAAAGACACCAG+AGG | 0.742039 | 5.4:+14164922 | MS.gene59505:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAATTTGTTATTTTTTTAA+TGG | - | chr5.4:14164802-14164821 | None:intergenic | 10.0% |
| !! | CATATATACTATACAAAAAT+GGG | + | chr5.4:14164432-14164451 | MS.gene59505:intron | 15.0% |
| !!! | ATGTTTATATTATGTTTTGT+TGG | + | chr5.4:14164526-14164545 | MS.gene59505:intron | 15.0% |
| !!! | TTTTATCGTTTATTTGATTT+GGG | + | chr5.4:14163949-14163968 | MS.gene59505:intron | 15.0% |
| !! | ATATATGCATATAAACTCAA+AGG | - | chr5.4:14164419-14164438 | None:intergenic | 20.0% |
| !! | CTGTTAATAATAAAGGATTA+GGG | + | chr5.4:14164079-14164098 | MS.gene59505:intron | 20.0% |
| !! | GCATATATACTATACAAAAA+TGG | + | chr5.4:14164431-14164450 | MS.gene59505:intron | 20.0% |
| !! | TATTATTAACAGCTATACAT+AGG | - | chr5.4:14164071-14164090 | None:intergenic | 20.0% |
| !! | TGTATAGCTGTTAATAATAA+AGG | + | chr5.4:14164072-14164091 | MS.gene59505:intron | 20.0% |
| !!! | ATTTCAATTTGTCTTTTGTT+TGG | + | chr5.4:14164172-14164191 | MS.gene59505:intron | 20.0% |
| !!! | GATATTTTTTTTTCCTTTGT+AGG | + | chr5.4:14164838-14164857 | MS.gene59505:intron | 20.0% |
| !!! | GGCAAAATATATATTTTCAA+AGG | - | chr5.4:14164307-14164326 | None:intergenic | 20.0% |
| !!! | GTTTTATCGTTTATTTGATT+TGG | + | chr5.4:14163948-14163967 | MS.gene59505:intron | 20.0% |
| !!! | TCGTTTATTTGATTTTGTTT+TGG | + | chr5.4:14163982-14164001 | MS.gene59505:intron | 20.0% |
| !!! | TTTCAATTTGTCTTTTGTTT+GGG | + | chr5.4:14164173-14164192 | MS.gene59505:intron | 20.0% |
| ! | GCTGTTAATAATAAAGGATT+AGG | + | chr5.4:14164078-14164097 | MS.gene59505:intron | 25.0% |
| ! | TGAAAAATCTGAATAGTTTC+TGG | + | chr5.4:14164041-14164060 | MS.gene59505:intron | 25.0% |
| ! | TGAATCTAAAAGGAATCAAA+AGG | - | chr5.4:14164615-14164634 | None:intergenic | 25.0% |
| ! | TGATAACCAAATGATGAATA+TGG | + | chr5.4:14164691-14164710 | MS.gene59505:intron | 25.0% |
| !! | AGAGATATTCTGTTTTCATT+TGG | + | chr5.4:14164358-14164377 | MS.gene59505:intron | 25.0% |
| !! | ATTCCTTTTAGATTCAAACT+TGG | + | chr5.4:14164619-14164638 | MS.gene59505:intron | 25.0% |
| !! | TAATAAAGGATTAGGGTTTT+TGG | + | chr5.4:14164086-14164105 | MS.gene59505:intron | 25.0% |
| !! | TAATAATCCTATGTTTCTGA+TGG | + | chr5.4:14164756-14164775 | MS.gene59505:intron | 25.0% |
| !! | TTTTAATGGCAATGAGTTTA+AGG | - | chr5.4:14164788-14164807 | None:intergenic | 25.0% |
| !!! | ATTTTGTTTTGGAATGTTTG+GGG | + | chr5.4:14163993-14164012 | MS.gene59505:intron | 25.0% |
| !!! | GATTTTGTTTTGGAATGTTT+GGG | + | chr5.4:14163992-14164011 | MS.gene59505:intron | 25.0% |
| !!! | TCTTTTTGTTTTTGAGTTGT+AGG | + | chr5.4:14164248-14164267 | MS.gene59505:intron | 25.0% |
| !!! | TGATTTTGTTTTGGAATGTT+TGG | + | chr5.4:14163991-14164010 | MS.gene59505:intron | 25.0% |
| !!! | TTTGTTTGGGTTGAATTTAA+TGG | + | chr5.4:14164186-14164205 | MS.gene59505:intron | 25.0% |
| CAACCAAGTTTGAATCTAAA+AGG | - | chr5.4:14164625-14164644 | None:intergenic | 30.0% | |
| GACAATCCATATTCATCATT+TGG | - | chr5.4:14164700-14164719 | None:intergenic | 30.0% | |
| TATTCTTAACCACTCACTTT+AGG | + | chr5.4:14164483-14164502 | MS.gene59505:intron | 30.0% | |
| TGAGTTGTAGGATATTGTTA+TGG | + | chr5.4:14164260-14164279 | MS.gene59505:intron | 30.0% | |
| ! | ATCTCATCTTGGTAAGTTTT+GGG | + | chr5.4:14163913-14163932 | MS.gene59505:intron | 30.0% |
| ! | TTTTGATGTTGAATGTCTTG+CGG | - | chr5.4:14164952-14164971 | None:intergenic | 30.0% |
| !! | GTTTGAATTGTTTGCTTTTG+TGG | + | chr5.4:14164222-14164241 | MS.gene59505:intron | 30.0% |
| !!! | GTTTTGTTGGCTTATCTTTT+TGG | + | chr5.4:14164539-14164558 | MS.gene59505:intron | 30.0% |
| !!! | TTTTGTTTTGGAATGTTTGG+GGG | + | chr5.4:14163994-14164013 | MS.gene59505:intron | 30.0% |
| ACACCAGAAAACCCTAATTT+AGG | - | chr5.4:14164021-14164040 | None:intergenic | 35.0% | |
| CAAAAATGATTTCTCTCCAG+AGG | + | chr5.4:14164967-14164986 | MS.gene59505:CDS | 35.0% | |
| CAAACTTGAAGGTTTGAAAG+GGG | + | chr5.4:14164328-14164347 | MS.gene59505:intron | 35.0% | |
| CCAAACTTGAAGGTTTGAAA+GGG | + | chr5.4:14164327-14164346 | MS.gene59505:intron | 35.0% | |
| GATGTAACCATCAGAAACAT+AGG | - | chr5.4:14164766-14164785 | None:intergenic | 35.0% | |
| TTTGGGAATTGATTGAGCTA+TGG | + | chr5.4:14164110-14164129 | MS.gene59505:intron | 35.0% | |
| ! | ATATTTTGCCCCAAACTTGA+AGG | + | chr5.4:14164317-14164336 | MS.gene59505:intron | 35.0% |
| ! | CCTTTCAAACCTTCAAGTTT+GGG | - | chr5.4:14164329-14164348 | None:intergenic | 35.0% |
| ! | CTTTCAAACCTTCAAGTTTG+GGG | - | chr5.4:14164328-14164347 | None:intergenic | 35.0% |
| ! | GATCTCATCTTGGTAAGTTT+TGG | + | chr5.4:14163912-14163931 | MS.gene59505:intron | 35.0% |
| ! | TCTCATCTTGGTAAGTTTTG+GGG | + | chr5.4:14163914-14163933 | MS.gene59505:intron | 35.0% |
| !! | TACGCTTTTTGATCTCATCT+TGG | + | chr5.4:14163902-14163921 | MS.gene59505:CDS | 35.0% |
| !!! | AGGATTAGGGTTTTTGGTTT+TGG | + | chr5.4:14164092-14164111 | MS.gene59505:intron | 35.0% |
| !!! | GGATTAGGGTTTTTGGTTTT+GGG | + | chr5.4:14164093-14164112 | MS.gene59505:intron | 35.0% |
| AACTAGACACCTAAAGTGAG+TGG | - | chr5.4:14164495-14164514 | None:intergenic | 40.0% | |
| AAGATCTTGCTCGTAACGTT+GGG | - | chr5.4:14163768-14163787 | None:intergenic | 40.0% | |
| AAGTAGTTAGCAGCCTACAA+AGG | - | chr5.4:14164854-14164873 | None:intergenic | 40.0% | |
| AAGTTCGTAGGGAAAACCAA+TGG | + | chr5.4:14164999-14165018 | MS.gene59505:CDS | 40.0% | |
| ACTGTTGCAGACATGATCAA+GGG | + | chr5.4:14164908-14164927 | MS.gene59505:CDS | 40.0% | |
| AGTTCGTAGGGAAAACCAAT+GGG | + | chr5.4:14165000-14165019 | MS.gene59505:CDS | 40.0% | |
| ATGTTTGGGGGTCCTAAATT+AGG | + | chr5.4:14164006-14164025 | MS.gene59505:intron | 40.0% | |
| CCCAAACTTGAAGGTTTGAA+AGG | + | chr5.4:14164326-14164345 | MS.gene59505:intron | 40.0% | |
| CTTGAATATCAAGAGCTTGC+TGG | + | chr5.4:14164871-14164890 | MS.gene59505:CDS | 40.0% | |
| TGTTTGGGGGTCCTAAATTA+GGG | + | chr5.4:14164007-14164026 | MS.gene59505:intron | 40.0% | |
| ! | CCCTTTCAAACCTTCAAGTT+TGG | - | chr5.4:14164330-14164349 | None:intergenic | 40.0% |
| ! | GGTCCTAAATTAGGGTTTTC+TGG | + | chr5.4:14164015-14164034 | MS.gene59505:intron | 40.0% |
| ! | TGGATTGTCATTTCTCACGA+CGG | + | chr5.4:14164711-14164730 | MS.gene59505:intron | 40.0% |
| AACAGCTTCATCAACCTCGA+AGG | - | chr5.4:14163679-14163698 | None:intergenic | 45.0% | |
| ACGAGGATGAGCTTAAGTCT+TGG | + | chr5.4:14163850-14163869 | MS.gene59505:CDS | 45.0% | |
| ATCACTCTCAAGAGTTCCGA+TGG | + | chr5.4:14163648-14163667 | MS.gene59505:CDS | 45.0% | |
| CAACGTTACGAGCAAGATCT+TGG | + | chr5.4:14163767-14163786 | MS.gene59505:CDS | 45.0% | |
| CAAGATCTTGCTCGTAACGT+TGG | - | chr5.4:14163769-14163788 | None:intergenic | 45.0% | |
| CGAGGATGAGCTTAAGTCTT+GGG | + | chr5.4:14163851-14163870 | MS.gene59505:CDS | 45.0% | |
| CTGATCAACCTTCACGAACT+CGG | - | chr5.4:14163880-14163899 | None:intergenic | 45.0% | |
| GACTGTTGCAGACATGATCA+AGG | + | chr5.4:14164907-14164926 | MS.gene59505:CDS | 45.0% | |
| GACTTAAGCTCATCCTCGTT+AGG | - | chr5.4:14163849-14163868 | None:intergenic | 45.0% | |
| TGATCATGTCTGCAACAGTC+TGG | - | chr5.4:14164907-14164926 | None:intergenic | 45.0% | |
| TGATTTCTCTCCAGAGGAAG+AGG | + | chr5.4:14164973-14164992 | MS.gene59505:CDS | 45.0% | |
| TGCTGAAGACAAACCTAACG+AGG | + | chr5.4:14163833-14163852 | MS.gene59505:CDS | 45.0% | |
| !! | GGTTGATGAAGCTGTTGCTT+TGG | + | chr5.4:14163683-14163702 | MS.gene59505:CDS | 45.0% |
| AATGTCTTGCGGATCTCCTC+TGG | - | chr5.4:14164941-14164960 | None:intergenic | 50.0% | |
| AGGAAGAGGAGGAAGTTCGT+AGG | + | chr5.4:14164987-14165006 | MS.gene59505:CDS | 50.0% | |
| GATCAAGGGAAAGACACCAG+AGG | + | chr5.4:14164922-14164941 | MS.gene59505:CDS | 50.0% | |
| GGAAGAGGAGGAAGTTCGTA+GGG | + | chr5.4:14164988-14165007 | MS.gene59505:CDS | 50.0% | |
| TACGAGCAAGATCTTGGCGA+AGG | + | chr5.4:14163773-14163792 | MS.gene59505:CDS | 50.0% | |
| TGCTCGTAACGTTGGGAAGA+GGG | - | chr5.4:14163761-14163780 | None:intergenic | 50.0% | |
| TTGCTCGTAACGTTGGGAAG+AGG | - | chr5.4:14163762-14163781 | None:intergenic | 50.0% | |
| TTGGGATTCCGAGTTCGTGA+AGG | + | chr5.4:14163869-14163888 | MS.gene59505:CDS | 50.0% | |
| TTTCTCTCCAGAGGAAGAGG+AGG | + | chr5.4:14164976-14164995 | MS.gene59505:CDS | 50.0% | |
| ! | CGAGTTCGTGAAGGTTGATC+AGG | + | chr5.4:14163878-14163897 | MS.gene59505:CDS | 50.0% |
| AACCTCGAAGGTCTCGCCAT+CGG | - | chr5.4:14163667-14163686 | None:intergenic | 55.0% | |
| CATGTCTGCAACAGTCTGGC+AGG | - | chr5.4:14164903-14164922 | None:intergenic | 55.0% | |
| CGAACTTCCTCCTCTTCCTC+TGG | - | chr5.4:14164986-14165005 | None:intergenic | 55.0% | |
| ! | GAAGACGATTGCGCTGACAG+TGG | + | chr5.4:14163732-14163751 | MS.gene59505:CDS | 55.0% |
| TTCCGATGGCGAGACCTTCG+AGG | + | chr5.4:14163662-14163681 | MS.gene59505:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 14163630 | 14165033 | 14163630 | ID=MS.gene59505 |
| chr5.4 | mRNA | 14163630 | 14165033 | 14163630 | ID=MS.gene59505.t1;Parent=MS.gene59505 |
| chr5.4 | exon | 14163630 | 14163923 | 14163630 | ID=MS.gene59505.t1.exon1;Parent=MS.gene59505.t1 |
| chr5.4 | CDS | 14163630 | 14163923 | 14163630 | ID=cds.MS.gene59505.t1;Parent=MS.gene59505.t1 |
| chr5.4 | exon | 14164860 | 14165033 | 14164860 | ID=MS.gene59505.t1.exon2;Parent=MS.gene59505.t1 |
| chr5.4 | CDS | 14164860 | 14165033 | 14164860 | ID=cds.MS.gene59505.t1;Parent=MS.gene59505.t1 |
| Gene Sequence |
| Protein sequence |
