AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene84072

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84072.t1 MTR_5g022730 99.355 155 1 0 1 155 1 155 2.20e-112 315
MS.gene84072.t1 MTR_5g022710 96.129 155 6 0 1 155 1 155 2.37e-109 308
MS.gene84072.t1 MTR_7g021400 85.714 154 22 0 2 155 3 156 3.06e-90 259
MS.gene84072.t1 MTR_7g094150 85.897 156 21 1 1 155 1 156 8.40e-89 256
MS.gene84072.t1 MTR_7g094170 83.766 154 25 0 2 155 3 156 1.98e-87 252
MS.gene84072.t1 MTR_4g032400 78.065 155 33 1 2 155 9 163 1.12e-84 246
MS.gene84072.t1 MTR_4g032450 74.839 155 38 1 2 155 21 175 1.88e-83 243
MS.gene84072.t1 MTR_7g021380 81.818 154 28 0 2 155 3 156 2.11e-83 242
MS.gene84072.t1 MTR_3g110048 75.641 156 36 1 2 155 3 158 2.52e-83 242
MS.gene84072.t1 MTR_7g094120 73.718 156 39 1 2 155 4 159 3.91e-82 239
MS.gene84072.t1 MTR_5g085030 73.548 155 40 1 1 154 1 155 2.13e-79 232
MS.gene84072.t1 MTR_7g094280 72.785 158 40 2 1 155 1 158 1.42e-78 230
MS.gene84072.t1 MTR_8g468480 71.154 156 44 1 1 155 1 156 3.89e-78 229
MS.gene84072.t1 MTR_8g056060 73.548 155 40 1 2 155 3 157 9.15e-78 228
MS.gene84072.t1 MTR_7g094310 69.620 158 35 3 1 155 1 148 4.48e-71 211
MS.gene84072.t1 MTR_4g032460 72.436 156 36 2 1 155 1 150 4.69e-71 211
MS.gene84072.t1 MTR_4g032510 69.032 155 40 3 3 155 5 153 9.14e-71 210
MS.gene84072.t1 MTR_4g032500 66.452 155 45 2 2 155 4 152 6.55e-69 205
MS.gene84072.t1 MTR_5g082340 66.667 156 40 2 1 155 1 145 7.57e-65 195
MS.gene84072.t1 MTR_4g033455 60.390 154 61 0 2 155 7 160 8.77e-65 195
MS.gene84072.t1 MTR_4g017860 54.359 195 46 3 4 155 26 220 5.82e-63 192
MS.gene84072.t1 MTR_1g099870 84.314 102 14 1 56 155 2 103 1.03e-58 178
MS.gene84072.t1 MTR_4g033460 60.000 140 56 0 2 141 7 146 3.60e-58 181
MS.gene84072.t1 MTR_4g033460 59.140 93 30 1 40 132 161 245 6.66e-30 109
MS.gene84072.t1 MTR_4g021390 58.442 154 61 1 2 155 5 155 6.84e-58 177
MS.gene84072.t1 MTR_8g089730 69.106 123 21 1 33 155 1 106 1.62e-49 154
MS.gene84072.t1 MTR_7g094320 56.051 157 27 2 1 155 1 117 9.37e-48 150
MS.gene84072.t1 MTR_4g032420 61.417 127 34 3 30 155 38 150 7.91e-47 149
MS.gene84072.t1 MTR_4g032470 50.685 146 28 2 11 155 32 134 4.37e-43 139
MS.gene84072.t1 MTR_7g006370 54.286 140 55 2 2 141 5 135 5.48e-43 139
MS.gene84072.t1 MTR_4g131980 65.000 120 36 3 1 118 1 116 1.42e-41 136
MS.gene84072.t1 MTR_4g127240 66.019 103 29 4 39 139 26 124 1.03e-39 130
MS.gene84072.t1 MTR_7g094410 52.597 154 31 4 2 113 3 156 1.15e-39 132
MS.gene84072.t1 MTR_7g094360 46.512 172 38 4 1 118 1 172 2.69e-38 129
MS.gene84072.t1 MTR_8g056090 48.701 154 46 6 2 153 3 125 2.06e-35 120
MS.gene84072.t1 MTR_4g119422 49.315 146 67 2 2 145 228 368 7.11e-35 125
MS.gene84072.t1 MTR_1g112590 39.355 155 78 2 7 145 1 155 8.98e-33 114
MS.gene84072.t1 MTR_7g071200 69.565 69 20 1 88 155 4 72 5.12e-28 99.4
MS.gene84072.t1 MTR_2g066010 41.722 151 76 5 7 154 20 161 3.08e-27 100
MS.gene84072.t1 MTR_4g032520 43.750 144 39 4 28 153 1 120 2.15e-26 97.1
MS.gene84072.t1 MTR_2g065720 41.060 151 77 5 7 154 37 178 3.60e-26 98.6
MS.gene84072.t1 MTR_7g094350 54.444 90 28 1 2 91 3 79 7.73e-23 89.7
MS.gene84072.t1 MTR_7g094350 51.685 89 39 3 47 134 102 187 9.00e-20 81.6
MS.gene84072.t1 MTR_4g032540 65.079 63 21 1 89 150 70 132 9.04e-23 87.8
MS.gene84072.t1 MTR_5g096950 35.897 156 81 3 3 154 2 142 1.27e-22 87.8
MS.gene84072.t1 MTR_1g042510 34.615 156 64 4 7 145 1 135 2.75e-22 90.1
MS.gene84072.t1 MTR_2g018980 34.000 150 86 3 7 155 3 140 9.63e-22 85.5
MS.gene84072.t1 MTR_1g112570 36.691 139 63 4 7 127 1 132 6.64e-21 86.7
MS.gene84072.t1 MTR_5g078680 32.051 156 68 3 7 145 1 135 1.23e-19 82.8
MS.gene84072.t1 MTR_6g053620 36.806 144 81 5 7 145 17 155 4.36e-19 82.4
MS.gene84072.t1 MTR_6g053620 36.806 144 81 5 7 145 17 155 5.35e-19 82.0
MS.gene84072.t1 MTR_8g007195 34.286 140 80 4 9 142 13 146 2.88e-18 79.7
MS.gene84072.t1 MTR_7g077810 34.722 144 84 4 7 145 18 156 9.70e-18 78.6
MS.gene84072.t1 MTR_8g007185 32.877 146 87 4 7 146 11 151 9.28e-17 75.5
MS.gene84072.t1 MTR_2g100830 33.793 145 80 5 9 145 13 149 1.01e-16 75.5
MS.gene84072.t1 MTR_8g007205 32.877 146 87 4 7 146 11 151 1.64e-16 74.7
MS.gene84072.t1 MTR_2g100825 32.867 143 87 4 7 145 11 148 1.77e-16 74.7
MS.gene84072.t1 MTR_7g036780 31.884 138 84 5 2 134 4 136 9.82e-15 69.3
MS.gene84072.t1 MTR_4g131910 39.286 112 58 2 4 111 133 238 1.08e-14 69.3
MS.gene84072.t1 MTR_8g030670 30.345 145 91 3 9 148 20 159 2.68e-14 69.3
MS.gene84072.t1 MTR_3g061700 33.684 95 56 2 52 145 1 89 3.10e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84072.t1 AT5G42190 76.608 171 24 1 1 155 1 171 9.73e-86 249
MS.gene84072.t1 AT1G75950 79.245 159 27 1 3 155 2 160 2.82e-84 244
MS.gene84072.t1 AT1G20140 73.006 163 36 3 1 155 1 163 4.58e-82 239
MS.gene84072.t1 AT2G25700 69.325 163 42 3 1 155 1 163 1.79e-77 227
MS.gene84072.t1 AT4G34210 70.130 154 42 2 3 155 2 152 3.80e-76 224
MS.gene84072.t1 AT4G34470 69.481 154 43 2 3 155 2 152 2.12e-75 222
MS.gene84072.t1 AT3G21860 67.097 155 45 3 3 155 2 152 9.51e-68 202
MS.gene84072.t1 AT3G60010 64.331 157 47 3 4 155 2 154 1.22e-66 199
MS.gene84072.t1 AT3G21850 64.516 155 50 3 3 155 2 153 1.32e-66 199
MS.gene84072.t1 AT2G03170 62.987 154 50 2 3 155 2 149 1.22e-63 192
MS.gene84072.t1 AT2G03190 56.024 166 60 3 3 155 2 167 1.96e-59 182
MS.gene84072.t1 AT3G60020 56.329 158 57 3 4 155 2 153 2.71e-56 173
MS.gene84072.t1 AT2G03160 49.206 189 60 3 3 155 2 190 5.68e-56 174
MS.gene84072.t1 AT3G21830 56.494 154 63 2 3 155 2 152 1.48e-55 171
MS.gene84072.t1 AT2G20160 55.556 153 62 2 3 154 2 149 1.33e-53 166
MS.gene84072.t1 AT3G25650 57.831 166 57 5 3 155 2 167 1.85e-53 167
MS.gene84072.t1 AT1G10230 57.419 155 63 2 3 154 2 156 2.77e-52 163
MS.gene84072.t1 AT3G21840 58.333 120 44 3 3 120 2 117 2.18e-37 124
MS.gene84072.t1 AT3G53060 65.116 86 23 3 28 112 1 80 3.22e-31 107
MS.gene84072.t1 AT3G61415 34.028 144 85 5 7 145 18 156 3.19e-16 74.7
MS.gene84072.t1 AT3G61415 34.028 144 85 5 7 145 18 156 3.46e-16 74.3
MS.gene84072.t1 AT2G45950 31.944 144 88 4 7 145 18 156 5.03e-16 73.9
MS.gene84072.t1 AT2G45950 31.944 144 88 4 7 145 18 156 5.03e-16 73.9
MS.gene84072.t1 AT2G45950 31.944 144 88 4 7 145 18 156 5.15e-16 73.9
MS.gene84072.t1 AT2G45950 31.944 144 88 4 7 145 18 156 5.15e-16 73.9
MS.gene84072.t1 AT2G45950 31.944 144 88 4 7 145 18 156 5.15e-16 73.9

Find 40 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGGTCTTGCGAATCTCTTC+AGG 0.314015 1.3:-32996669 None:intergenic
GGTCGATGAAGCGGTTGCTT+TGG 0.364221 1.3:+32995514 MS.gene84072:CDS
GAAATCATTCTTAATGTTGA+AGG 0.372420 1.3:-32996688 None:intergenic
CAACGTTACCAGCAAGATCT+TGG 0.386921 1.3:+32995598 MS.gene84072:CDS
CGAGGATGAGCTTAAGTCTT+GGG 0.409245 1.3:+32995682 MS.gene84072:CDS
TGATCATGTCTGCCACAGTC+TGG 0.431834 1.3:-32996635 None:intergenic
CGAGTTCGTCAAGGTTGATC+AGG 0.435035 1.3:+32995709 MS.gene84072:CDS
CACCTTCGCCAAGATCTTGC+TGG 0.436666 1.3:-32995606 None:intergenic
GACTTAAGCTCATCCTCGTT+AGG 0.455978 1.3:-32995677 None:intergenic
TGATTTCTCTCCAGAGGAAG+AGG 0.475889 1.3:+32996704 MS.gene84072:CDS
AAGATCTTGCTGGTAACGTT+GGG 0.477857 1.3:-32995596 None:intergenic
TTTGAATATCAAGAACCTGC+TGG 0.483519 1.3:+32996602 MS.gene84072:CDS
CGAACTTCCTCCTCTTCCTC+TGG 0.494352 1.3:-32996714 None:intergenic
TGCTGGTAACGTTGGGAAGA+GGG 0.508109 1.3:-32995589 None:intergenic
TTGCTGGTAACGTTGGGAAG+AGG 0.523250 1.3:-32995590 None:intergenic
CAAGATCTTGCTGGTAACGT+TGG 0.530853 1.3:-32995597 None:intergenic
GGAAGAGGAGGAAGTTCGTA+GGG 0.537389 1.3:+32996719 MS.gene84072:CDS
ATAATCATTCAAATGCCCAT+TGG 0.541287 1.3:-32996746 None:intergenic
CTGATCAACCTTGACGAACT+CGG 0.543997 1.3:-32995708 None:intergenic
ACGAGGATGAGCTTAAGTCT+TGG 0.544399 1.3:+32995681 MS.gene84072:CDS
AGGAAGAGGAGGAAGTTCGT+AGG 0.548370 1.3:+32996718 MS.gene84072:CDS
GACTGTGGCAGACATGATCA+AGG 0.557841 1.3:+32996638 MS.gene84072:CDS
AGTTCGTAGGGAAAACCAAT+GGG 0.562143 1.3:+32996731 MS.gene84072:CDS
AAGTTCGTAGGGAAAACCAA+TGG 0.564773 1.3:+32996730 MS.gene84072:CDS
GGGAAGAGGGATTCCACTGT+CGG 0.568035 1.3:-32995576 None:intergenic
GAAGATGATTGCGCCGACAG+TGG 0.570141 1.3:+32995563 MS.gene84072:CDS
TTGGGATTCCGAGTTCGTCA+AGG 0.598524 1.3:+32995700 MS.gene84072:CDS
TAAGAATGATTTCTCTCCAG+AGG 0.603350 1.3:+32996698 MS.gene84072:CDS
ATCACTCTCAAGAGTTCCGA+CGG 0.604938 1.3:+32995479 MS.gene84072:CDS
GACCTTCGAGGTCGATGAAG+CGG 0.610768 1.3:+32995505 MS.gene84072:CDS
TTCCGACGGTGAGACCTTCG+AGG 0.613590 1.3:+32995493 MS.gene84072:CDS
TTTCTCTCCAGAGGAAGAGG+AGG 0.615178 1.3:+32996707 MS.gene84072:CDS
TCTGGCATGTAAGATCCAGC+AGG 0.615709 1.3:-32996617 None:intergenic
AACCGCTTCATCGACCTCGA+AGG 0.623664 1.3:-32995507 None:intergenic
ACTGTGGCAGACATGATCAA+GGG 0.624146 1.3:+32996639 MS.gene84072:CDS
TACCAGCAAGATCTTGGCGA+AGG 0.627734 1.3:+32995604 MS.gene84072:CDS
CTGTGGCAGACATGATCAAG+GGG 0.638852 1.3:+32996640 MS.gene84072:CDS
GACCTCGAAGGTCTCACCGT+CGG 0.662584 1.3:-32995495 None:intergenic
GGATCTTACATGCCAGACTG+TGG 0.675179 1.3:+32996623 MS.gene84072:CDS
TGCTGAAGACAAACCTAACG+AGG 0.677963 1.3:+32995664 MS.gene84072:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGAATAAGAATATCATT+TGG - chr1.3:32996227-32996246 None:intergenic 15.0%
!! TTTAATTCGTTTATTTGATT+TGG + chr1.3:32995773-32995792 MS.gene84072:intron 15.0%
!!! TTAATTCGTTTATTTGATTT+GGG + chr1.3:32995774-32995793 MS.gene84072:intron 15.0%
!! AAAGGAAAAAATATGATATC+AGG - chr1.3:32996567-32996586 None:intergenic 20.0%
!! AAGAATATCATTTGGATATT+CGG - chr1.3:32996219-32996238 None:intergenic 20.0%
!!! AGCAAATTTGCATTTTTTAA+TGG - chr1.3:32996538-32996557 None:intergenic 20.0%
!!! ATGTTTATGTTTTGTTTTGT+TGG + chr1.3:32996285-32996304 MS.gene84072:intron 20.0%
!!! ATTTCAATTTGTCTTTTGTT+TGG + chr1.3:32995890-32995909 MS.gene84072:intron 20.0%
!!! GGCAAAATATATATTTTTGA+AGG - chr1.3:32996109-32996128 None:intergenic 20.0%
!!! TATCATATTTTTTCCTTTGT+AGG + chr1.3:32996569-32996588 MS.gene84072:intron 20.0%
!!! TTTCAATTTGTCTTTTGTTT+GGG + chr1.3:32995891-32995910 MS.gene84072:intron 20.0%
! AAAACCAAAAACCCTAATTT+AGG - chr1.3:32995824-32995843 None:intergenic 25.0%
! GAAATCATTCTTAATGTTGA+AGG - chr1.3:32996691-32996710 None:intergenic 25.0%
! TCTTTCAAACCTTAAAGTTT+GGG - chr1.3:32996131-32996150 None:intergenic 25.0%
! TTCTTTCAAACCTTAAAGTT+TGG - chr1.3:32996132-32996151 None:intergenic 25.0%
! TTTGTTCTACAACATTGTTA+TGG + chr1.3:32996057-32996076 MS.gene84072:intron 25.0%
!! TAATAATCCTATGTTTCTGA+TGG + chr1.3:32996492-32996511 MS.gene84072:intron 25.0%
!!! AAATTAGGGTTTTTGGTTTT+GGG + chr1.3:32995824-32995843 MS.gene84072:intron 25.0%
!!! AACTTTAAGGTTTGAAAGAA+AGG + chr1.3:32996132-32996151 MS.gene84072:intron 25.0%
!!! ACTTTAAGGTTTGAAAGAAA+GGG + chr1.3:32996133-32996152 MS.gene84072:intron 25.0%
!!! ATCTTGGTAAGTTTGTTTTA+GGG + chr1.3:32995749-32995768 MS.gene84072:intron 25.0%
!!! ATTTGATTTGGGTTTTGTTT+TGG + chr1.3:32995785-32995804 MS.gene84072:intron 25.0%
!!! TAAATTAGGGTTTTTGGTTT+TGG + chr1.3:32995823-32995842 MS.gene84072:intron 25.0%
!!! TTGTTTGGGTTGAATTTAAT+GGG + chr1.3:32995905-32995924 MS.gene84072:intron 25.0%
!!! TTTGTTTGGGTTGAATTTAA+TGG + chr1.3:32995904-32995923 MS.gene84072:intron 25.0%
AAATAATTAGCAGCCTACAA+AGG - chr1.3:32996585-32996604 None:intergenic 30.0%
CTTTCAAACCTTAAAGTTTG+GGG - chr1.3:32996130-32996149 None:intergenic 30.0%
TGATAACCAAATGATGAACA+TGG + chr1.3:32996427-32996446 MS.gene84072:intron 30.0%
! ATATTTTGCCCCAAACTTTA+AGG + chr1.3:32996119-32996138 MS.gene84072:intron 30.0%
! CAGGGATTTTATGTTTTCAT+TGG + chr1.3:32996163-32996182 MS.gene84072:intron 30.0%
! TTTAATGGCAATGAGTTGAA+GGG - chr1.3:32996523-32996542 None:intergenic 30.0%
!! CATCTTGGTAAGTTTGTTTT+AGG + chr1.3:32995748-32995767 MS.gene84072:intron 30.0%
!! CTTTAAGGTTTGAAAGAAAG+GGG + chr1.3:32996134-32996153 MS.gene84072:intron 30.0%
!! TTTTAATGGCAATGAGTTGA+AGG - chr1.3:32996524-32996543 None:intergenic 30.0%
!!! GGTTTTGTTTTGGAATGTTT+GGG + chr1.3:32995795-32995814 MS.gene84072:intron 30.0%
!!! GTTTTGTTTTGGAATGTTTG+GGG + chr1.3:32995796-32995815 MS.gene84072:intron 30.0%
!!! TTTTGTTTTGGAATGTTTGG+GGG + chr1.3:32995797-32995816 MS.gene84072:intron 30.0%
AATAGCATATAGCCCAATAG+AGG - chr1.3:32995995-32996014 None:intergenic 35.0%
ACAATTGTTTGTGCCTCTAT+TGG + chr1.3:32995979-32995998 MS.gene84072:intron 35.0%
AGAGAATTTGACATAGTGAG+TGG - chr1.3:32996258-32996277 None:intergenic 35.0%
ATTCGTCGTGTTTGTTTGTT+TGG + chr1.3:32996332-32996351 MS.gene84072:intron 35.0%
CAATTGTTTGTGCCTCTATT+GGG + chr1.3:32995980-32995999 MS.gene84072:intron 35.0%
GAAAGAAAGGGGAATATTCA+GGG + chr1.3:32996145-32996164 MS.gene84072:intron 35.0%
GACAATCCATGTTCATCATT+TGG - chr1.3:32996436-32996455 None:intergenic 35.0%
TAAGAATGATTTCTCTCCAG+AGG + chr1.3:32996698-32996717 MS.gene84072:CDS 35.0%
TGAAAGAAAGGGGAATATTC+AGG + chr1.3:32996144-32996163 MS.gene84072:intron 35.0%
TTTGAATATCAAGAACCTGC+TGG + chr1.3:32996602-32996621 MS.gene84072:CDS 35.0%
!! TACGCTTTTTGATCTCATCT+TGG + chr1.3:32995733-32995752 MS.gene84072:CDS 35.0%
!!! GGGTTTTGTTTTGGAATGTT+TGG + chr1.3:32995794-32995813 MS.gene84072:intron 35.0%
AAAAAGATAGCCACAAGAGC+AGG - chr1.3:32996040-32996059 None:intergenic 40.0%
AAGTTCGTAGGGAAAACCAA+TGG + chr1.3:32996730-32996749 MS.gene84072:CDS 40.0%
AGTTCGTAGGGAAAACCAAT+GGG + chr1.3:32996731-32996750 MS.gene84072:CDS 40.0%
ATGTTTGGGGGTCCTAAATT+AGG + chr1.3:32995809-32995828 MS.gene84072:intron 40.0%
GGTGTAACCATCAGAAACAT+AGG - chr1.3:32996502-32996521 None:intergenic 40.0%
TGTTTGGGGGTCCTAAATTA+GGG + chr1.3:32995810-32995829 MS.gene84072:intron 40.0%
! AAGATCTTGCTGGTAACGTT+GGG - chr1.3:32995599-32995618 None:intergenic 40.0%
! GGGTCCTAAATTAGGGTTTT+TGG + chr1.3:32995817-32995836 MS.gene84072:intron 40.0%
!!! GGATTGTCATTTTCTCACGA+CGG + chr1.3:32996448-32996467 MS.gene84072:intron 40.0%
AAGGTCTTGCGAATCTCTTC+AGG - chr1.3:32996672-32996691 None:intergenic 45.0%
ACGAGGATGAGCTTAAGTCT+TGG + chr1.3:32995681-32995700 MS.gene84072:CDS 45.0%
ACTGTGGCAGACATGATCAA+GGG + chr1.3:32996639-32996658 MS.gene84072:CDS 45.0%
ATCACTCTCAAGAGTTCCGA+CGG + chr1.3:32995479-32995498 MS.gene84072:CDS 45.0%
CAACGTTACCAGCAAGATCT+TGG + chr1.3:32995598-32995617 MS.gene84072:CDS 45.0%
CGAGGATGAGCTTAAGTCTT+GGG + chr1.3:32995682-32995701 MS.gene84072:CDS 45.0%
CTGATCAACCTTGACGAACT+CGG - chr1.3:32995711-32995730 None:intergenic 45.0%
GACTTAAGCTCATCCTCGTT+AGG - chr1.3:32995680-32995699 None:intergenic 45.0%
TGATTTCTCTCCAGAGGAAG+AGG + chr1.3:32996704-32996723 MS.gene84072:CDS 45.0%
TGCTGAAGACAAACCTAACG+AGG + chr1.3:32995664-32995683 MS.gene84072:CDS 45.0%
TGTTGAATTGCCTGCTCTTG+TGG + chr1.3:32996027-32996046 MS.gene84072:intron 45.0%
! CAAGATCTTGCTGGTAACGT+TGG - chr1.3:32995600-32995619 None:intergenic 45.0%
AGGAAGAGGAGGAAGTTCGT+AGG + chr1.3:32996718-32996737 MS.gene84072:CDS 50.0%
CTGTGGCAGACATGATCAAG+GGG + chr1.3:32996640-32996659 MS.gene84072:CDS 50.0%
GACTGTGGCAGACATGATCA+AGG + chr1.3:32996638-32996657 MS.gene84072:CDS 50.0%
GGAAGAGGAGGAAGTTCGTA+GGG + chr1.3:32996719-32996738 MS.gene84072:CDS 50.0%
GGATCTTACATGCCAGACTG+TGG + chr1.3:32996623-32996642 MS.gene84072:CDS 50.0%
TACCAGCAAGATCTTGGCGA+AGG + chr1.3:32995604-32995623 MS.gene84072:CDS 50.0%
TCTGGCATGTAAGATCCAGC+AGG - chr1.3:32996620-32996639 None:intergenic 50.0%
TGATCATGTCTGCCACAGTC+TGG - chr1.3:32996638-32996657 None:intergenic 50.0%
TTGGGATTCCGAGTTCGTCA+AGG + chr1.3:32995700-32995719 MS.gene84072:CDS 50.0%
TTTCTCTCCAGAGGAAGAGG+AGG + chr1.3:32996707-32996726 MS.gene84072:CDS 50.0%
! CGAGTTCGTCAAGGTTGATC+AGG + chr1.3:32995709-32995728 MS.gene84072:CDS 50.0%
! TGCTGGTAACGTTGGGAAGA+GGG - chr1.3:32995592-32995611 None:intergenic 50.0%
! TTGCTGGTAACGTTGGGAAG+AGG - chr1.3:32995593-32995612 None:intergenic 50.0%
AACCGCTTCATCGACCTCGA+AGG - chr1.3:32995510-32995529 None:intergenic 55.0%
CACCTTCGCCAAGATCTTGC+TGG - chr1.3:32995609-32995628 None:intergenic 55.0%
CGAACTTCCTCCTCTTCCTC+TGG - chr1.3:32996717-32996736 None:intergenic 55.0%
GACCTTCGAGGTCGATGAAG+CGG + chr1.3:32995505-32995524 MS.gene84072:CDS 55.0%
GGGAAGAGGGATTCCACTGT+CGG - chr1.3:32995579-32995598 None:intergenic 55.0%
GGTCGATGAAGCGGTTGCTT+TGG + chr1.3:32995514-32995533 MS.gene84072:CDS 55.0%
! GAAGATGATTGCGCCGACAG+TGG + chr1.3:32995563-32995582 MS.gene84072:CDS 55.0%
GACCTCGAAGGTCTCACCGT+CGG - chr1.3:32995498-32995517 None:intergenic 60.0%
TTCCGACGGTGAGACCTTCG+AGG + chr1.3:32995493-32995512 MS.gene84072:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 32995461 32996764 32995461 ID=MS.gene84072
chr1.3 mRNA 32995461 32996764 32995461 ID=MS.gene84072.t1;Parent=MS.gene84072
chr1.3 exon 32995461 32995754 32995461 ID=MS.gene84072.t1.exon1;Parent=MS.gene84072.t1
chr1.3 CDS 32995461 32995754 32995461 ID=cds.MS.gene84072.t1;Parent=MS.gene84072.t1
chr1.3 exon 32996591 32996764 32996591 ID=MS.gene84072.t1.exon2;Parent=MS.gene84072.t1
chr1.3 CDS 32996591 32996764 32996591 ID=cds.MS.gene84072.t1;Parent=MS.gene84072.t1
Gene Sequence

>MS.gene84072

ATGTCTTCAACAAGAAAGATCACTCTCAAGAGTTCCGACGGTGAGACCTTCGAGGTCGATGAAGCGGTTGCTTTGGAATCTCAGACGATCAAGCATATGATCGAAGATGATTGCGCCGACAGTGGAATCCCTCTTCCCAACGTTACCAGCAAGATCTTGGCGAAGGTGATTGAGTATTGCAAGAAGCATGTTGACGCTGCTGCTGCTGAAGACAAACCTAACGAGGATGAGCTTAAGTCTTGGGATTCCGAGTTCGTCAAGGTTGATCAGGCTACGCTTTTTGATCTCATCTTGGTAAGTTTGTTTTAGGGTTTTAATTCGTTTATTTGATTTGGGTTTTGTTTTGGAATGTTTGGGGGTCCTAAATTAGGGTTTTTGGTTTTGGGAATTGATTGAGCTATTTTTTATTTGATCGTTGAAGTTTTTTCAATTTCAATTTGTCTTTTGTTTGGGTTGAATTTAATGGGTTATCAGTAGTAGTTGTTTGAATTGTGATTGTTGTTGTTGTTGATGCTGTTACAATTGTTTGTGCCTCTATTGGGCTATATGCTATTGTTTTGATGTTGTGTTGAATTGCCTGCTCTTGTGGCTATCTTTTTGTTCTACAACATTGTTATGGTTGATGCTGCTATGCTATTGTGAAATCCTTCAAAAATATATATTTTGCCCCAAACTTTAAGGTTTGAAAGAAAGGGGAATATTCAGGGATTTTATGTTTTCATTGGATTGTTATGTGAGAAACTGTATAGTCAAATCCGAATATCCAAATGATATTCTTATTCTTTTTACATTAACCACTCACTATGTCAAATTCTCTGTTTTGTATGTTTATGTTTTGTTTTGTTGGCTTATCTTTTCATTCTGTTGAAATATTCGTCGTGTTTGTTTGTTTGGATAACTTGCACAATGCAATGCTATTGTGTTTATTATTCATTCAGTGTTTGTATCACACAATCAATCACTTACTGATAACCAAATGATGAACATGGATTGTCATTTTCTCACGACGGTCGTCTGAGTTAACTATGATGTAATAATCCTATGTTTCTGATGGTTACACCCTTCAACTCATTGCCATTAAAAAATGCAAATTTGCTTTGAATCCTGATATCATATTTTTTCCTTTGTAGGCTGCTAATTATTTGAATATCAAGAACCTGCTGGATCTTACATGCCAGACTGTGGCAGACATGATCAAGGGGAAGACACCTGAAGAGATTCGCAAGACCTTCAACATTAAGAATGATTTCTCTCCAGAGGAAGAGGAGGAAGTTCGTAGGGAAAACCAATGGGCATTTGAATGA
Protein sequence

>MS.gene84072.t1

MSSTRKITLKSSDGETFEVDEAVALESQTIKHMIEDDCADSGIPLPNVTSKILAKVIEYCKKHVDAAAAEDKPNEDELKSWDSEFVKVDQATLFDLILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPEEEEEVRRENQWAFE