Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61551.t1 | RHN75922.1 | 69.9 | 123 | 6 | 1 | 37 | 128 | 83 | 205 | 4.90E-39 | 171.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61551.t1 | Q10NX8 | 59.3 | 123 | 19 | 1 | 37 | 128 | 94 | 216 | 2.2e-35 | 150.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61551.t1 | G7IRQ0 | 69.9 | 123 | 6 | 1 | 37 | 128 | 83 | 205 | 3.5e-39 | 171.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene61551 | 0.82903 | 6.46E-55 | -1.69E-46 |
| MS.gene049977 | MS.gene61551 | 0.812086 | 5.06E-51 | -1.69E-46 |
| MS.gene050559 | MS.gene61551 | 0.805978 | 1.03E-49 | -1.69E-46 |
| MS.gene051279 | MS.gene61551 | 0.808459 | 3.07E-50 | -1.69E-46 |
| MS.gene051594 | MS.gene61551 | 0.802322 | 5.93E-49 | -1.69E-46 |
| MS.gene052447 | MS.gene61551 | 0.845722 | 3.40E-59 | -1.69E-46 |
| MS.gene052519 | MS.gene61551 | 0.806175 | 9.34E-50 | -1.69E-46 |
| MS.gene053082 | MS.gene61551 | 0.814189 | 1.75E-51 | -1.69E-46 |
| MS.gene05329 | MS.gene61551 | 0.811995 | 5.30E-51 | -1.69E-46 |
| MS.gene053396 | MS.gene61551 | 0.820902 | 5.37E-53 | -1.69E-46 |
| MS.gene053883 | MS.gene61551 | 0.804343 | 2.26E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene61551 | 0.834089 | 3.67E-56 | -1.69E-46 |
| MS.gene05423 | MS.gene61551 | 0.818135 | 2.30E-52 | -1.69E-46 |
| MS.gene054651 | MS.gene61551 | 0.810062 | 1.39E-50 | -1.69E-46 |
| MS.gene05531 | MS.gene61551 | 0.817007 | 4.12E-52 | -1.69E-46 |
| MS.gene055952 | MS.gene61551 | 0.811888 | 5.59E-51 | -1.69E-46 |
| MS.gene056272 | MS.gene61551 | 0.811295 | 7.52E-51 | -1.69E-46 |
| MS.gene056366 | MS.gene61551 | 0.810988 | 8.76E-51 | -1.69E-46 |
| MS.gene057414 | MS.gene61551 | 0.815042 | 1.13E-51 | -1.69E-46 |
| MS.gene058625 | MS.gene61551 | 0.801469 | 8.87E-49 | -1.69E-46 |
| MS.gene059584 | MS.gene61551 | 0.815538 | 8.78E-52 | -1.69E-46 |
| MS.gene060521 | MS.gene61551 | 0.834491 | 2.91E-56 | -1.69E-46 |
| MS.gene060634 | MS.gene61551 | -0.811573 | 6.54E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61551.t1 | MTR_2g094020 | 69.919 | 123 | 6 | 1 | 37 | 128 | 83 | 205 | 2.11e-48 | 170 |
| MS.gene61551.t1 | MTR_2g094060 | 68.293 | 123 | 8 | 1 | 37 | 128 | 83 | 205 | 2.76e-47 | 166 |
| MS.gene61551.t1 | MTR_2g094060 | 68.293 | 123 | 8 | 1 | 37 | 128 | 83 | 205 | 4.49e-47 | 166 |
| MS.gene61551.t1 | MTR_2g094060 | 68.293 | 123 | 8 | 1 | 37 | 128 | 83 | 205 | 4.57e-47 | 166 |
| MS.gene61551.t1 | MTR_3g062610 | 57.252 | 131 | 44 | 2 | 107 | 227 | 64 | 192 | 1.19e-36 | 131 |
| MS.gene61551.t1 | MTR_4g059680 | 56.911 | 123 | 22 | 1 | 37 | 128 | 87 | 209 | 1.47e-36 | 136 |
| MS.gene61551.t1 | MTR_3g062610 | 57.252 | 131 | 44 | 2 | 107 | 227 | 64 | 192 | 3.06e-36 | 132 |
| MS.gene61551.t1 | MTR_1g018200 | 40.645 | 155 | 61 | 1 | 37 | 160 | 92 | 246 | 2.73e-31 | 121 |
| MS.gene61551.t1 | MTR_2g100110 | 40.645 | 155 | 61 | 1 | 37 | 160 | 89 | 243 | 3.83e-31 | 120 |
| MS.gene61551.t1 | MTR_5g075680 | 49.587 | 121 | 51 | 1 | 122 | 232 | 70 | 190 | 3.84e-31 | 115 |
| MS.gene61551.t1 | MTR_2g100110 | 40.645 | 155 | 61 | 1 | 37 | 160 | 89 | 243 | 5.23e-31 | 120 |
| MS.gene61551.t1 | MTR_2g039120 | 47.154 | 123 | 34 | 1 | 37 | 128 | 89 | 211 | 1.71e-30 | 119 |
| MS.gene61551.t1 | MTR_1g023120 | 46.512 | 129 | 37 | 2 | 31 | 127 | 83 | 211 | 1.76e-30 | 119 |
| MS.gene61551.t1 | MTR_1g023120 | 46.512 | 129 | 37 | 2 | 31 | 127 | 25 | 153 | 2.27e-30 | 118 |
| MS.gene61551.t1 | MTR_2g039120 | 47.154 | 123 | 34 | 1 | 37 | 128 | 89 | 211 | 2.36e-30 | 118 |
| MS.gene61551.t1 | MTR_5g075680 | 49.587 | 121 | 51 | 1 | 122 | 232 | 17 | 137 | 2.49e-30 | 115 |
| MS.gene61551.t1 | MTR_5g075680 | 49.587 | 121 | 51 | 1 | 122 | 232 | 70 | 190 | 2.95e-30 | 114 |
| MS.gene61551.t1 | MTR_2g039120 | 47.154 | 123 | 34 | 1 | 37 | 128 | 89 | 211 | 3.00e-30 | 118 |
| MS.gene61551.t1 | MTR_2g039120 | 47.154 | 123 | 34 | 1 | 37 | 128 | 89 | 211 | 3.30e-30 | 118 |
| MS.gene61551.t1 | MTR_8g085210 | 47.541 | 122 | 33 | 1 | 37 | 127 | 111 | 232 | 6.98e-30 | 117 |
| MS.gene61551.t1 | MTR_5g075680 | 44.056 | 143 | 68 | 2 | 100 | 232 | 50 | 190 | 7.58e-30 | 114 |
| MS.gene61551.t1 | MTR_3g112370 | 44.961 | 129 | 39 | 2 | 31 | 127 | 82 | 210 | 3.27e-29 | 115 |
| MS.gene61551.t1 | MTR_3g096910 | 45.528 | 123 | 36 | 1 | 37 | 128 | 88 | 210 | 4.20e-29 | 115 |
| MS.gene61551.t1 | MTR_3g005570 | 47.581 | 124 | 34 | 1 | 37 | 129 | 87 | 210 | 5.68e-29 | 114 |
| MS.gene61551.t1 | MTR_8g016230 | 37.419 | 155 | 66 | 1 | 37 | 160 | 86 | 240 | 7.68e-29 | 114 |
| MS.gene61551.t1 | MTR_5g021190 | 43.411 | 129 | 41 | 2 | 31 | 127 | 80 | 208 | 9.14e-29 | 114 |
| MS.gene61551.t1 | MTR_2g042610 | 41.129 | 124 | 42 | 1 | 37 | 129 | 88 | 211 | 1.98e-25 | 104 |
| MS.gene61551.t1 | MTR_4g126330 | 59.211 | 76 | 25 | 1 | 22 | 97 | 22 | 91 | 5.90e-25 | 102 |
| MS.gene61551.t1 | MTR_5g025830 | 42.742 | 124 | 40 | 1 | 37 | 129 | 89 | 212 | 1.95e-24 | 101 |
| MS.gene61551.t1 | MTR_3g117840 | 40.323 | 124 | 43 | 1 | 37 | 129 | 96 | 219 | 4.60e-24 | 100 |
| MS.gene61551.t1 | MTR_4g073290 | 42.623 | 122 | 39 | 1 | 37 | 127 | 89 | 210 | 6.29e-23 | 97.1 |
| MS.gene61551.t1 | MTR_5g024080 | 39.516 | 124 | 44 | 1 | 37 | 129 | 71 | 194 | 7.43e-23 | 97.1 |
| MS.gene61551.t1 | MTR_3g088520 | 40.650 | 123 | 42 | 1 | 37 | 128 | 87 | 209 | 1.19e-21 | 93.6 |
| MS.gene61551.t1 | MTR_3g088520 | 40.984 | 122 | 41 | 1 | 37 | 127 | 32 | 153 | 1.45e-21 | 93.2 |
| MS.gene61551.t1 | MTR_7g022890 | 51.546 | 97 | 45 | 1 | 131 | 227 | 46 | 140 | 6.37e-18 | 81.6 |
| MS.gene61551.t1 | MTR_7g022890 | 62.667 | 75 | 28 | 0 | 153 | 227 | 119 | 193 | 6.68e-18 | 82.0 |
| MS.gene61551.t1 | MTR_8g069135 | 92.105 | 38 | 3 | 0 | 1 | 38 | 262 | 299 | 1.06e-17 | 80.9 |
| MS.gene61551.t1 | MTR_3g096900 | 59.322 | 59 | 24 | 0 | 38 | 96 | 89 | 147 | 3.22e-17 | 80.5 |
| MS.gene61551.t1 | MTR_3g096900 | 59.322 | 59 | 24 | 0 | 38 | 96 | 89 | 147 | 4.56e-17 | 80.1 |
| MS.gene61551.t1 | MTR_3g096900 | 59.322 | 59 | 24 | 0 | 38 | 96 | 89 | 147 | 5.06e-17 | 80.1 |
| MS.gene61551.t1 | MTR_8g046550 | 54.545 | 88 | 38 | 1 | 140 | 227 | 104 | 189 | 1.08e-15 | 75.5 |
| MS.gene61551.t1 | MTR_3g080090 | 52.174 | 92 | 42 | 1 | 136 | 227 | 105 | 194 | 1.71e-15 | 75.1 |
| MS.gene61551.t1 | MTR_2g064405 | 63.768 | 69 | 25 | 0 | 159 | 227 | 120 | 188 | 3.69e-15 | 73.9 |
| MS.gene61551.t1 | MTR_2g064405 | 63.768 | 69 | 25 | 0 | 159 | 227 | 43 | 111 | 5.40e-15 | 73.2 |
| MS.gene61551.t1 | MTR_3g081690 | 72.727 | 44 | 12 | 0 | 184 | 227 | 1 | 44 | 1.35e-14 | 72.4 |
| MS.gene61551.t1 | MTR_3g082050 | 72.727 | 44 | 12 | 0 | 184 | 227 | 1 | 44 | 1.90e-14 | 72.0 |
| MS.gene61551.t1 | MTR_3g082050 | 74.419 | 43 | 11 | 0 | 184 | 226 | 1 | 43 | 2.05e-14 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61551.t1 | AT2G28470 | 59.350 | 123 | 19 | 1 | 37 | 128 | 93 | 215 | 2.69e-40 | 147 |
| MS.gene61551.t1 | AT2G28470 | 59.350 | 123 | 19 | 1 | 37 | 128 | 93 | 215 | 2.69e-40 | 147 |
| MS.gene61551.t1 | AT2G28470 | 59.350 | 123 | 19 | 1 | 37 | 128 | 87 | 209 | 2.86e-40 | 147 |
| MS.gene61551.t1 | AT2G28470 | 59.350 | 123 | 19 | 1 | 37 | 128 | 87 | 209 | 2.86e-40 | 147 |
| MS.gene61551.t1 | AT2G28470 | 59.350 | 123 | 19 | 1 | 37 | 128 | 93 | 215 | 3.56e-40 | 146 |
| MS.gene61551.t1 | AT2G32810 | 49.180 | 122 | 31 | 1 | 37 | 127 | 99 | 220 | 7.09e-33 | 125 |
| MS.gene61551.t1 | AT2G32810 | 49.180 | 122 | 31 | 1 | 37 | 127 | 99 | 220 | 7.96e-33 | 125 |
| MS.gene61551.t1 | AT3G58060 | 81.818 | 66 | 12 | 0 | 162 | 227 | 133 | 198 | 2.22e-31 | 119 |
| MS.gene61551.t1 | AT3G58060 | 81.818 | 66 | 12 | 0 | 162 | 227 | 133 | 198 | 2.22e-31 | 119 |
| MS.gene61551.t1 | AT4G36360 | 46.154 | 130 | 38 | 2 | 31 | 128 | 87 | 216 | 2.76e-31 | 121 |
| MS.gene61551.t1 | AT4G36360 | 46.154 | 130 | 38 | 2 | 31 | 128 | 87 | 216 | 2.89e-31 | 121 |
| MS.gene61551.t1 | AT3G13750 | 40.000 | 155 | 62 | 1 | 37 | 160 | 95 | 249 | 6.52e-31 | 120 |
| MS.gene61551.t1 | AT4G26140 | 40.000 | 150 | 59 | 1 | 37 | 155 | 90 | 239 | 5.08e-30 | 117 |
| MS.gene61551.t1 | AT4G26140 | 40.000 | 150 | 59 | 1 | 37 | 155 | 90 | 239 | 5.26e-30 | 117 |
| MS.gene61551.t1 | AT4G26140 | 40.000 | 150 | 59 | 1 | 37 | 155 | 90 | 239 | 5.29e-30 | 117 |
| MS.gene61551.t1 | AT4G26140 | 40.000 | 150 | 59 | 1 | 37 | 155 | 90 | 239 | 5.29e-30 | 117 |
| MS.gene61551.t1 | AT4G26140 | 40.000 | 150 | 59 | 1 | 37 | 155 | 90 | 239 | 5.56e-30 | 117 |
| MS.gene61551.t1 | AT4G26140 | 40.000 | 150 | 59 | 1 | 37 | 155 | 90 | 239 | 5.59e-30 | 117 |
| MS.gene61551.t1 | AT4G26140 | 40.000 | 150 | 59 | 1 | 37 | 155 | 90 | 239 | 5.60e-30 | 117 |
| MS.gene61551.t1 | AT4G26140 | 40.000 | 150 | 59 | 1 | 37 | 155 | 90 | 239 | 5.70e-30 | 117 |
| MS.gene61551.t1 | AT4G26140 | 40.000 | 150 | 59 | 1 | 37 | 155 | 90 | 239 | 5.70e-30 | 117 |
| MS.gene61551.t1 | AT1G45130 | 37.419 | 155 | 66 | 1 | 37 | 160 | 13 | 167 | 4.03e-29 | 115 |
| MS.gene61551.t1 | AT1G45130 | 37.662 | 154 | 65 | 1 | 38 | 160 | 93 | 246 | 6.10e-29 | 114 |
| MS.gene61551.t1 | AT5G56870 | 46.721 | 122 | 34 | 1 | 37 | 127 | 90 | 211 | 2.18e-28 | 112 |
| MS.gene61551.t1 | AT5G20710 | 45.161 | 124 | 37 | 1 | 37 | 129 | 89 | 212 | 3.19e-28 | 112 |
| MS.gene61551.t1 | AT1G31740 | 37.333 | 150 | 63 | 1 | 37 | 155 | 83 | 232 | 7.58e-28 | 111 |
| MS.gene61551.t1 | AT3G52840 | 39.873 | 158 | 63 | 2 | 2 | 127 | 108 | 265 | 6.74e-27 | 108 |
| MS.gene61551.t1 | AT3G52840 | 39.873 | 158 | 63 | 2 | 2 | 127 | 54 | 211 | 7.46e-27 | 108 |
| MS.gene61551.t1 | AT5G63800 | 41.803 | 122 | 40 | 1 | 37 | 127 | 93 | 214 | 2.83e-25 | 103 |
| MS.gene61551.t1 | AT1G77410 | 41.463 | 123 | 41 | 1 | 37 | 128 | 86 | 208 | 1.11e-24 | 102 |
| MS.gene61551.t1 | AT1G77410 | 39.844 | 128 | 41 | 1 | 37 | 128 | 86 | 213 | 5.13e-24 | 100 |
| MS.gene61551.t1 | AT5G63810 | 34.615 | 156 | 71 | 1 | 37 | 161 | 93 | 248 | 2.87e-23 | 98.2 |
| MS.gene61551.t1 | AT2G16730 | 39.516 | 124 | 44 | 1 | 37 | 129 | 105 | 228 | 7.96e-23 | 97.1 |
| MS.gene61551.t1 | AT4G38590 | 39.516 | 124 | 44 | 1 | 37 | 129 | 32 | 155 | 9.36e-23 | 96.7 |
| MS.gene61551.t1 | AT4G38590 | 39.516 | 124 | 44 | 1 | 37 | 129 | 100 | 223 | 1.06e-22 | 96.7 |
| MS.gene61551.t1 | AT4G35010 | 35.484 | 124 | 49 | 1 | 37 | 129 | 102 | 225 | 1.34e-19 | 87.4 |
| MS.gene61551.t1 | AT2G39450 | 50.515 | 97 | 46 | 1 | 131 | 227 | 93 | 187 | 7.00e-17 | 79.0 |
| MS.gene61551.t1 | AT1G79520 | 61.429 | 70 | 27 | 0 | 158 | 227 | 75 | 144 | 1.30e-15 | 75.1 |
| MS.gene61551.t1 | AT1G79520 | 61.429 | 70 | 27 | 0 | 158 | 227 | 75 | 144 | 1.30e-15 | 75.1 |
| MS.gene61551.t1 | AT1G79520 | 61.429 | 70 | 27 | 0 | 158 | 227 | 140 | 209 | 1.69e-15 | 75.1 |
| MS.gene61551.t1 | AT1G79520 | 61.429 | 70 | 27 | 0 | 158 | 227 | 128 | 197 | 1.70e-15 | 75.1 |
| MS.gene61551.t1 | AT1G16310 | 61.429 | 70 | 27 | 0 | 158 | 227 | 155 | 224 | 3.18e-15 | 74.3 |
| MS.gene61551.t1 | AT1G16310 | 61.429 | 70 | 27 | 0 | 158 | 227 | 42 | 111 | 4.06e-15 | 73.6 |
Find 53 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTGACAATGAACCATTTA+AGG | 0.172483 | 8.2:-84105688 | MS.gene61551:intron |
| GGATTCTCTGCTTCATCTAT+TGG | 0.185819 | 8.2:-84104349 | MS.gene61551:CDS |
| GAACGTTTCCTTACCTTAAA+TGG | 0.203447 | 8.2:+84105675 | None:intergenic |
| CTTATACCTTCGGGGAGTTC+TGG | 0.310554 | 8.2:+84127468 | None:intergenic |
| CACAGATGAGAGGGGCCTTC+AGG | 0.337161 | 8.2:-84128096 | None:intergenic |
| GTTTGTGCTGAATGGAACTA+TGG | 0.350260 | 8.2:-84105831 | MS.gene61551:CDS |
| ATGGCTACATCTCTTGATAT+AGG | 0.396704 | 8.2:-84105325 | MS.gene61551:intron |
| CTGGTAAATCATACATCAAT+TGG | 0.400918 | 8.2:-84105357 | MS.gene61551:CDS |
| GCAAGGACAAAGGGTGAGAC+AGG | 0.405111 | 8.2:-84127525 | MS.gene61551:CDS |
| TTCCAGATTGAAGATGAGTA+TGG | 0.407622 | 8.2:-84105406 | MS.gene61551:intron |
| AGCTATTGCAGCATCAACTT+TGG | 0.408001 | 8.2:-84104370 | MS.gene61551:CDS |
| CTGCTTCATCTATTGGTTGG+TGG | 0.423199 | 8.2:-84104342 | MS.gene61551:CDS |
| GTCCATATGTTTGTGCTGAA+TGG | 0.430727 | 8.2:-84105839 | MS.gene61551:CDS |
| TTCCATTCAGCACAAACATA+TGG | 0.448715 | 8.2:+84105837 | None:intergenic |
| TAAATGGTTCATTGTCAGTT+GGG | 0.452498 | 8.2:+84105691 | None:intergenic |
| TCTCTGCTTCATCTATTGGT+TGG | 0.453881 | 8.2:-84104345 | MS.gene61551:CDS |
| CTTTGGCTTAACTTCATCCC+AGG | 0.459958 | 8.2:-84105723 | MS.gene61551:CDS |
| TATTGGTTGGTGGTATACTT+TGG | 0.461717 | 8.2:-84104332 | MS.gene61551:CDS |
| AAACTGAGGGTGCAGCCAGC+AGG | 0.475531 | 8.2:-84104258 | MS.gene61551:CDS |
| GCTGCTGTCATGGCCACACT+TGG | 0.478615 | 8.2:-84104222 | MS.gene61551:CDS |
| GGTAAGTTTGCAGCTTTGAC+AGG | 0.480207 | 8.2:+84104860 | None:intergenic |
| GGAGACATCGATTCAGCCTA+TGG | 0.480983 | 8.2:-84105385 | MS.gene61551:CDS |
| TTGAAAGATGCACAGATGAG+AGG | 0.482860 | 8.2:-84128106 | None:intergenic |
| TGTAGACATATGCGACGATA+AGG | 0.494037 | 8.2:-84104404 | MS.gene61551:intron |
| CTATATGTGCATCTCCGTAT+TGG | 0.495851 | 8.2:-84105861 | MS.gene61551:CDS |
| GGGAGTTCTGGCTGATCAAA+GGG | 0.502508 | 8.2:+84127480 | None:intergenic |
| TCAGTTGGGAACTTAATCCC+TGG | 0.511302 | 8.2:+84105705 | None:intergenic |
| TTAAATGGTTCATTGTCAGT+TGG | 0.513735 | 8.2:+84105690 | None:intergenic |
| ATTGTCAAAGCAAGGACAAA+GGG | 0.516938 | 8.2:-84127534 | MS.gene61551:CDS |
| CAGTTGGGAACTTAATCCCT+GGG | 0.517107 | 8.2:+84105706 | None:intergenic |
| GTGAAAGCAGTGGCTGAGGC+AGG | 0.519491 | 8.2:-84105885 | MS.gene61551:CDS |
| TTTGGCTTAACTTCATCCCA+GGG | 0.523495 | 8.2:-84105722 | MS.gene61551:CDS |
| GATTCAGCCTATGGTTCTGC+TGG | 0.524874 | 8.2:-84105376 | MS.gene61551:CDS |
| GGGGAGTTCTGGCTGATCAA+AGG | 0.526296 | 8.2:+84127479 | None:intergenic |
| TGAAAGATGCACAGATGAGA+GGG | 0.533085 | 8.2:-84128105 | None:intergenic |
| AATATCTACCAGTATCCCAT+TGG | 0.548999 | 8.2:-84104282 | MS.gene61551:CDS |
| TGATTTACCAGCAGAACCAT+AGG | 0.557167 | 8.2:+84105369 | None:intergenic |
| CACAAACATATGGACCAATA+CGG | 0.573068 | 8.2:+84105847 | None:intergenic |
| CAAATTTGACTCACCAAGTG+TGG | 0.593321 | 8.2:+84104209 | None:intergenic |
| AATTGTCAAAGCAAGGACAA+AGG | 0.597621 | 8.2:-84127535 | MS.gene61551:CDS |
| ATTTGTGAAAGCAGTGGCTG+AGG | 0.607383 | 8.2:-84105889 | MS.gene61551:CDS |
| GGGATGAAGTTAAGCCAAAG+AGG | 0.618858 | 8.2:+84105726 | None:intergenic |
| GGATGAAGTTAAGCCAAAGA+GGG | 0.630030 | 8.2:+84105727 | None:intergenic |
| TTTGTGCTGAATGGAACTAT+GGG | 0.643438 | 8.2:-84105830 | MS.gene61551:intron |
| GTATCCCATTGGAAAACTGA+GGG | 0.649654 | 8.2:-84104271 | MS.gene61551:CDS |
| ACATATGCGACGATAAGGAG+TGG | 0.654802 | 8.2:-84104399 | MS.gene61551:CDS |
| GAACAATGCTTATACCTTCG+GGG | 0.657190 | 8.2:+84127460 | None:intergenic |
| AGTATCCCATTGGAAAACTG+AGG | 0.662300 | 8.2:-84104272 | MS.gene61551:CDS |
| GGTGAAATTTGTGAAAGCAG+TGG | 0.671103 | 8.2:-84105895 | MS.gene61551:CDS |
| AAAGCTGCAAACTTACCACA+TGG | 0.671567 | 8.2:-84104854 | MS.gene61551:CDS |
| GATCAGCCAGAACTCCCCGA+AGG | 0.697086 | 8.2:-84127474 | MS.gene61551:intron |
| GAAAGATGCACAGATGAGAG+GGG | 0.702096 | 8.2:-84128104 | None:intergenic |
| TAGAGATGTGAAACTCCATG+TGG | 0.755788 | 8.2:+84104839 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 84104203 | 84128113 | 84104203 | ID=MS.gene61551 |
| chr8.2 | mRNA | 84104203 | 84128113 | 84104203 | ID=MS.gene61551.t1;Parent=MS.gene61551 |
| chr8.2 | exon | 84128097 | 84128113 | 84128097 | ID=MS.gene61551.t1.exon1;Parent=MS.gene61551.t1 |
| chr8.2 | CDS | 84128097 | 84128113 | 84128097 | ID=cds.MS.gene61551.t1;Parent=MS.gene61551.t1 |
| chr8.2 | exon | 84127475 | 84127568 | 84127475 | ID=MS.gene61551.t1.exon2;Parent=MS.gene61551.t1 |
| chr8.2 | CDS | 84127475 | 84127568 | 84127475 | ID=cds.MS.gene61551.t1;Parent=MS.gene61551.t1 |
| chr8.2 | exon | 84105831 | 84105943 | 84105831 | ID=MS.gene61551.t1.exon3;Parent=MS.gene61551.t1 |
| chr8.2 | CDS | 84105831 | 84105943 | 84105831 | ID=cds.MS.gene61551.t1;Parent=MS.gene61551.t1 |
| chr8.2 | exon | 84105689 | 84105755 | 84105689 | ID=MS.gene61551.t1.exon4;Parent=MS.gene61551.t1 |
| chr8.2 | CDS | 84105689 | 84105755 | 84105689 | ID=cds.MS.gene61551.t1;Parent=MS.gene61551.t1 |
| chr8.2 | exon | 84105326 | 84105422 | 84105326 | ID=MS.gene61551.t1.exon5;Parent=MS.gene61551.t1 |
| chr8.2 | CDS | 84105326 | 84105422 | 84105326 | ID=cds.MS.gene61551.t1;Parent=MS.gene61551.t1 |
| chr8.2 | exon | 84104837 | 84104928 | 84104837 | ID=MS.gene61551.t1.exon6;Parent=MS.gene61551.t1 |
| chr8.2 | CDS | 84104837 | 84104928 | 84104837 | ID=cds.MS.gene61551.t1;Parent=MS.gene61551.t1 |
| chr8.2 | exon | 84104203 | 84104421 | 84104203 | ID=MS.gene61551.t1.exon7;Parent=MS.gene61551.t1 |
| chr8.2 | CDS | 84104203 | 84104421 | 84104203 | ID=cds.MS.gene61551.t1;Parent=MS.gene61551.t1 |
| Gene Sequence |
| Protein sequence |
