Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61670.t1 | XP_003588703.1 | 93.2 | 428 | 18 | 1 | 1 | 417 | 1 | 428 | 7.80E-229 | 802.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61670.t1 | Q88FY2 | 21.5 | 358 | 243 | 7 | 7 | 350 | 4 | 337 | 2.8e-09 | 64.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61670.t1 | G7I6C9 | 93.2 | 428 | 18 | 1 | 1 | 417 | 1 | 428 | 5.6e-229 | 802.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049915 | MS.gene61670 | 0.817962 | 2.51E-52 | -1.69E-46 |
| MS.gene050330 | MS.gene61670 | -0.817747 | 2.81E-52 | -1.69E-46 |
| MS.gene050438 | MS.gene61670 | 0.826398 | 2.77E-54 | -1.69E-46 |
| MS.gene050558 | MS.gene61670 | 0.847345 | 1.23E-59 | -1.69E-46 |
| MS.gene050560 | MS.gene61670 | 0.832613 | 8.55E-56 | -1.69E-46 |
| MS.gene050719 | MS.gene61670 | 0.807638 | 4.58E-50 | -1.69E-46 |
| MS.gene050721 | MS.gene61670 | 0.810971 | 8.84E-51 | -1.69E-46 |
| MS.gene050724 | MS.gene61670 | 0.817032 | 4.07E-52 | -1.69E-46 |
| MS.gene050820 | MS.gene61670 | 0.812395 | 4.33E-51 | -1.69E-46 |
| MS.gene051265 | MS.gene61670 | 0.804162 | 2.47E-49 | -1.69E-46 |
| MS.gene051860 | MS.gene61670 | 0.813267 | 2.79E-51 | -1.69E-46 |
| MS.gene053184 | MS.gene61670 | 0.811319 | 7.43E-51 | -1.69E-46 |
| MS.gene053584 | MS.gene61670 | 0.80002 | 1.75E-48 | -1.69E-46 |
| MS.gene053836 | MS.gene61670 | 0.824641 | 7.23E-54 | -1.69E-46 |
| MS.gene054667 | MS.gene61670 | 0.804856 | 1.77E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene61670 | 0.800153 | 1.65E-48 | -1.69E-46 |
| MS.gene056875 | MS.gene61670 | 0.809937 | 1.48E-50 | -1.69E-46 |
| MS.gene057121 | MS.gene61670 | 0.823114 | 1.65E-53 | -1.69E-46 |
| MS.gene057260 | MS.gene61670 | 0.807695 | 4.46E-50 | -1.69E-46 |
| MS.gene057750 | MS.gene61670 | 0.822405 | 2.41E-53 | -1.69E-46 |
| MS.gene057754 | MS.gene61670 | 0.802218 | 6.23E-49 | -1.69E-46 |
| MS.gene058002 | MS.gene61670 | 0.803949 | 2.73E-49 | -1.69E-46 |
| MS.gene058736 | MS.gene61670 | 0.812983 | 3.22E-51 | -1.69E-46 |
| MS.gene058739 | MS.gene61670 | 0.800768 | 1.23E-48 | -1.69E-46 |
| MS.gene058833 | MS.gene61670 | 0.802632 | 5.12E-49 | -1.69E-46 |
| MS.gene059124 | MS.gene61670 | 0.824402 | 8.23E-54 | -1.69E-46 |
| MS.gene059128 | MS.gene61670 | 0.826236 | 3.03E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61670.t1 | MTR_1g011690 | 93.224 | 428 | 18 | 1 | 1 | 417 | 1 | 428 | 0.0 | 811 |
| MS.gene61670.t1 | MTR_1g011700 | 68.605 | 430 | 88 | 5 | 1 | 417 | 1 | 396 | 0.0 | 560 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61670.t1 | AT5G11330 | 62.802 | 414 | 133 | 4 | 6 | 408 | 4 | 407 | 0.0 | 516 |
| MS.gene61670.t1 | AT5G11330 | 62.550 | 251 | 82 | 2 | 6 | 245 | 4 | 253 | 2.73e-108 | 320 |
Find 97 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTCAAATCATTCAATCT+TGG | 0.267009 | 1.3:+9356379 | MS.gene61670:CDS |
| AAGAAGGCATACCCTGATTT+AGG | 0.281482 | 1.3:+9357362 | MS.gene61670:CDS |
| TTGTCATGTTTGTGCTTCTA+AGG | 0.298117 | 1.3:-9358429 | None:intergenic |
| AACAATCTTACCTTTACTTC+AGG | 0.303617 | 1.3:-9357485 | None:intergenic |
| CTCCTCTTTCCTTGCAGACT+TGG | 0.323759 | 1.3:-9358632 | None:intergenic |
| ATCCCTTGGAGAAGATATTC+TGG | 0.324905 | 1.3:+9358356 | MS.gene61670:CDS |
| GGATCAAAAGGATCTCTATC+AGG | 0.331457 | 1.3:-9358610 | None:intergenic |
| CTAAGGTAGTGAGGCGTAGT+AGG | 0.337106 | 1.3:-9358412 | None:intergenic |
| AGTCCTACTGGTGCAGGTCT+TGG | 0.342814 | 1.3:+9356342 | MS.gene61670:CDS |
| GGAGAGGTTATTGAGATTGT+AGG | 0.348917 | 1.3:+9357093 | MS.gene61670:CDS |
| CCTCCAACAATCACTGCTTT+TGG | 0.355115 | 1.3:-9356228 | None:intergenic |
| ATAGTGAGAAGAAGGTTAAT+TGG | 0.367261 | 1.3:+9356896 | MS.gene61670:CDS |
| AAGGCTAAAGTTGTGAAAAC+TGG | 0.371063 | 1.3:+9357072 | MS.gene61670:CDS |
| ACAGACCTTAGTTTAAAATC+AGG | 0.374969 | 1.3:-9357171 | None:intergenic |
| TTTCCATGTTGCAAATGAAA+AGG | 0.377089 | 1.3:+9357035 | MS.gene61670:CDS |
| TAGGCAAATGCATAGAGAAA+TGG | 0.381893 | 1.3:+9358470 | MS.gene61670:CDS |
| AAACTTCAGAGCAGCACATT+GGG | 0.385934 | 1.3:+9356942 | MS.gene61670:CDS |
| TGCCCTTATCTTAGCTGGTT+GGG | 0.389461 | 1.3:+9356278 | MS.gene61670:CDS |
| CTTACCTTTACTTCAGGCTC+TGG | 0.395657 | 1.3:-9357479 | None:intergenic |
| ATATTAGATGCAGCGGTGTT+AGG | 0.401522 | 1.3:+9358451 | MS.gene61670:CDS |
| CTTGCAGACTTGGGATCAAA+AGG | 0.404489 | 1.3:-9358622 | None:intergenic |
| TGAAAAGCTTGAATCGGCTT+TGG | 0.407533 | 1.3:+9358498 | MS.gene61670:CDS |
| TCCTCTTTCCTTGCAGACTT+GGG | 0.408687 | 1.3:-9358631 | None:intergenic |
| TGCAAGGAAAGAGGAGTGTC+AGG | 0.422711 | 1.3:+9358639 | MS.gene61670:CDS |
| AAAACCACCTCACCTCCAAC+TGG | 0.426284 | 1.3:+9356318 | MS.gene61670:CDS |
| AGAACTTGCTTGGAAGTAAC+TGG | 0.427168 | 1.3:-9358544 | None:intergenic |
| AGGCAAATGCATAGAGAAAT+GGG | 0.438389 | 1.3:+9358471 | MS.gene61670:CDS |
| TTGTACTTTGACTTGGCCTC+AGG | 0.443786 | 1.3:+9357392 | MS.gene61670:CDS |
| GCACATTGGGGTGATCTTCA+TGG | 0.447172 | 1.3:+9356955 | MS.gene61670:CDS |
| GCACATGCCCTTATCTTAGC+TGG | 0.449723 | 1.3:+9356273 | MS.gene61670:CDS |
| ACTTTAGCCTTTACAATGAC+AGG | 0.452803 | 1.3:-9357060 | None:intergenic |
| TTCATGACCTTTGCTAACTC+AGG | 0.460263 | 1.3:-9358292 | None:intergenic |
| CGGTCGCATAAAACAAGGTC+TGG | 0.461955 | 1.3:+9358582 | MS.gene61670:CDS |
| ATGCCCTTATCTTAGCTGGT+TGG | 0.465754 | 1.3:+9356277 | MS.gene61670:CDS |
| CATCCCAACCAGCTAAGATA+AGG | 0.467240 | 1.3:-9356281 | None:intergenic |
| ATTGAATGATTTGAAGAGAG+AGG | 0.470374 | 1.3:-9356374 | None:intergenic |
| TGCCTTCTTGATACCTGTGA+TGG | 0.479221 | 1.3:-9357348 | None:intergenic |
| AAACCAAAAGCAGTGATTGT+TGG | 0.479656 | 1.3:+9356225 | MS.gene61670:CDS |
| ATTGTTGGAGGTAGCATTGG+AGG | 0.480364 | 1.3:+9356240 | MS.gene61670:CDS |
| CCTTGCATGAAGAACTTGCT+TGG | 0.482633 | 1.3:-9358554 | None:intergenic |
| TTCCATGTTGCAAATGAAAA+GGG | 0.483954 | 1.3:+9357036 | MS.gene61670:CDS |
| CCTCCAACTGGAAGTCCTAC+TGG | 0.484222 | 1.3:+9356330 | MS.gene61670:CDS |
| ATTCTGGGACAATGTGGTAT+TGG | 0.484504 | 1.3:+9358372 | MS.gene61670:CDS |
| CATATATGATAGTGATCCCT+TGG | 0.487961 | 1.3:+9358342 | MS.gene61670:CDS |
| TTGAATGATTTGAAGAGAGA+GGG | 0.490073 | 1.3:-9356373 | None:intergenic |
| GATTTGCTTGTTGCTGCAGA+TGG | 0.492918 | 1.3:+9357117 | MS.gene61670:CDS |
| GGAAGCTGAAAAGCTTGAAT+CGG | 0.497109 | 1.3:+9358492 | MS.gene61670:CDS |
| GTGATTGTTGGAGGTAGCAT+TGG | 0.503861 | 1.3:+9356237 | MS.gene61670:CDS |
| ATCCCAACCAGCTAAGATAA+GGG | 0.514118 | 1.3:-9356280 | None:intergenic |
| TCATCCACTAACTATTGATC+AGG | 0.514137 | 1.3:+9356437 | MS.gene61670:CDS |
| GTGGATGAGTGGTGTTGTGT+AGG | 0.518746 | 1.3:-9356422 | None:intergenic |
| TCAGCCAGAGCCTGAAGTAA+AGG | 0.521249 | 1.3:+9357475 | MS.gene61670:CDS |
| ACTGGAAGTCCTACTGGTGC+AGG | 0.521845 | 1.3:+9356336 | MS.gene61670:CDS |
| TTGACCTGATCAATAGTTAG+TGG | 0.522357 | 1.3:-9356441 | None:intergenic |
| TGGGACAATGTGGTATTGGT+AGG | 0.524425 | 1.3:+9358376 | MS.gene61670:CDS |
| TAAACTTCAGAGCAGCACAT+TGG | 0.527574 | 1.3:+9356941 | MS.gene61670:CDS |
| TCATATATGAAATTTAAGAA+AGG | 0.530399 | 1.3:-9358328 | None:intergenic |
| TCCCTTGGAGAAGATATTCT+GGG | 0.532438 | 1.3:+9358357 | MS.gene61670:CDS |
| GAAGAGAAGATGGTTGGAGA+AGG | 0.532970 | 1.3:+9356198 | None:intergenic |
| GTTCTTCATGCAAGGCGTCT+CGG | 0.536153 | 1.3:+9358562 | MS.gene61670:CDS |
| CCAAAAGCAGTGATTGTTGG+AGG | 0.538377 | 1.3:+9356228 | MS.gene61670:CDS |
| ACTTCCAGTTGGAGGTGAGG+TGG | 0.539750 | 1.3:-9356322 | None:intergenic |
| CCAAGCAAGTTCTTCATGCA+AGG | 0.542002 | 1.3:+9358554 | MS.gene61670:CDS |
| TGAATTGAAGAGAAGATGGT+TGG | 0.542032 | 1.3:+9356192 | None:intergenic |
| AAAATGCTTGTACTTTGACT+TGG | 0.543757 | 1.3:+9357385 | MS.gene61670:CDS |
| GGTAACTGATAGTGAGAAGA+AGG | 0.544832 | 1.3:+9356888 | MS.gene61670:CDS |
| CAGACCTTAGTTTAAAATCA+GGG | 0.548814 | 1.3:-9357170 | None:intergenic |
| TAAGGTAGTGAGGCGTAGTA+GGG | 0.552562 | 1.3:-9358411 | None:intergenic |
| AAAGGGTCCTGTCATTGTAA+AGG | 0.554399 | 1.3:+9357053 | MS.gene61670:CDS |
| GGGACAATGTGGTATTGGTA+GGG | 0.556947 | 1.3:+9358377 | MS.gene61670:CDS |
| TCTTCTCACTATCAGTTACC+AGG | 0.558524 | 1.3:-9356885 | None:intergenic |
| GTCCCAGAATATCTTCTCCA+AGG | 0.564956 | 1.3:-9358359 | None:intergenic |
| TCCCAAGTCTGCAAGGAAAG+AGG | 0.580114 | 1.3:+9358630 | MS.gene61670:CDS |
| TCCCAGAATATCTTCTCCAA+GGG | 0.587316 | 1.3:-9358358 | None:intergenic |
| AGGACTTCCAGTTGGAGGTG+AGG | 0.591634 | 1.3:-9356325 | None:intergenic |
| CCAGTAGGACTTCCAGTTGG+AGG | 0.592352 | 1.3:-9356330 | None:intergenic |
| GTTGTCTCTCTTCAATCCGT+CGG | 0.595021 | 1.3:+9357139 | MS.gene61670:CDS |
| TTGTTGGAGGTAGCATTGGA+GGG | 0.595560 | 1.3:+9356241 | MS.gene61670:CDS |
| GGACAATGTGGTATTGGTAG+GGG | 0.607883 | 1.3:+9358378 | MS.gene61670:CDS |
| GTGTTGTGTAGGAATTGTGG+TGG | 0.615782 | 1.3:-9356411 | None:intergenic |
| CATGACAATATTAGATGCAG+CGG | 0.616705 | 1.3:+9358444 | MS.gene61670:CDS |
| CGTCTCGGTCGCATAAAACA+AGG | 0.618626 | 1.3:+9358577 | MS.gene61670:CDS |
| GATCAAAAGGATCTCTATCA+GGG | 0.619750 | 1.3:-9358609 | None:intergenic |
| AACCATCACAGGTATCAAGA+AGG | 0.619798 | 1.3:+9357346 | MS.gene61670:CDS |
| GTGGTGTTGTGTAGGAATTG+TGG | 0.620083 | 1.3:-9356414 | None:intergenic |
| GAGAATTCAGAAACCATCAC+AGG | 0.622941 | 1.3:+9357335 | MS.gene61670:CDS |
| AATCAGGGAGATATTTCCGA+CGG | 0.632586 | 1.3:-9357155 | None:intergenic |
| ATGGATTCCTGAGTTAGCAA+AGG | 0.642615 | 1.3:+9358285 | MS.gene61670:CDS |
| TAAAGTTGTGAAAACTGGAG+AGG | 0.643282 | 1.3:+9357077 | MS.gene61670:CDS |
| TTTGTGCTTCTAAGGTAGTG+AGG | 0.645723 | 1.3:-9358421 | None:intergenic |
| AACTTCAGAGCAGCACATTG+GGG | 0.652616 | 1.3:+9356943 | MS.gene61670:CDS |
| AGTCCAAGACCTGCACCAGT+AGG | 0.656699 | 1.3:-9356345 | None:intergenic |
| ATCAATAGTTAGTGGATGAG+TGG | 0.658849 | 1.3:-9356433 | None:intergenic |
| GCACCAGTAGGACTTCCAGT+TGG | 0.664365 | 1.3:-9356333 | None:intergenic |
| GAAGATATTCTGGGACAATG+TGG | 0.671683 | 1.3:+9358366 | MS.gene61670:CDS |
| TAACACACTGTGTGTACCTG+AGG | 0.676605 | 1.3:-9357408 | None:intergenic |
| AAAGGTCATGAAAGAAACGA+AGG | 0.680367 | 1.3:+9358303 | MS.gene61670:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAATCCATAAAAGAAA+AGG | - | chr1.3:9357219-9357238 | None:intergenic | 15.0% |
| !! | ATTAAATCCATAAAAGAAAA+GGG | - | chr1.3:9357218-9357237 | None:intergenic | 15.0% |
| !! | TAAAATAAAAGATAAAGAGA+TGG | - | chr1.3:9356473-9356492 | None:intergenic | 15.0% |
| !! | TAATTATTCTAATGATTTGA+CGG | - | chr1.3:9356706-9356725 | None:intergenic | 15.0% |
| !! | TCATATATGAAATTTAAGAA+AGG | - | chr1.3:9358331-9358350 | None:intergenic | 15.0% |
| !! | TTATCAATAAAGAAAAATAG+TGG | - | chr1.3:9358114-9358133 | None:intergenic | 15.0% |
| !! | ATAAAAAACTCAATTGGATT+TGG | + | chr1.3:9357444-9357463 | MS.gene61670:CDS | 20.0% |
| !! | CAATTATGATAACTGTTATT+GGG | - | chr1.3:9357527-9357546 | None:intergenic | 20.0% |
| !!! | ATCCAATTGAGTTTTTTATT+CGG | - | chr1.3:9357443-9357462 | None:intergenic | 20.0% |
| ! | AAAATGATCATCAGTAACAA+CGG | + | chr1.3:9356616-9356635 | MS.gene61670:intron | 25.0% |
| ! | AAATGTGCATCATTGAAAAA+AGG | - | chr1.3:9358685-9358704 | None:intergenic | 25.0% |
| ! | AACGTTTCTTTAAATCAAAC+AGG | + | chr1.3:9357898-9357917 | MS.gene61670:intron | 25.0% |
| ! | AATAAAAGATAAAGAGATGG+TGG | - | chr1.3:9356470-9356489 | None:intergenic | 25.0% |
| ! | ATAATTAAGATACACTGATG+TGG | - | chr1.3:9357976-9357995 | None:intergenic | 25.0% |
| ! | ATAGAGTTTAAATCTCATGT+AGG | + | chr1.3:9356585-9356604 | MS.gene61670:intron | 25.0% |
| ! | CCAATAACAGTTATCATAAT+TGG | + | chr1.3:9357525-9357544 | MS.gene61670:intron | 25.0% |
| ! | CCAATTATGATAACTGTTAT+TGG | - | chr1.3:9357528-9357547 | None:intergenic | 25.0% |
| ! | TTCCGAATAAAAAACTCAAT+TGG | + | chr1.3:9357438-9357457 | MS.gene61670:CDS | 25.0% |
| ! | TTTAAATCAAAGAGAAGACA+TGG | + | chr1.3:9357837-9357856 | MS.gene61670:intron | 25.0% |
| !! | ATGTCTTCTCTTTGATTTAA+AGG | - | chr1.3:9357838-9357857 | None:intergenic | 25.0% |
| !! | TAACTTTCCCTTTTCTTTTA+TGG | + | chr1.3:9357208-9357227 | MS.gene61670:intron | 25.0% |
| !! | TGTCTTCTCTTTGATTTAAA+GGG | - | chr1.3:9357837-9357856 | None:intergenic | 25.0% |
| !!! | TCCACCACAAATATTTTTAT+GGG | + | chr1.3:9356996-9357015 | MS.gene61670:CDS | 25.0% |
| !!! | TTCCACCACAAATATTTTTA+TGG | + | chr1.3:9356995-9357014 | MS.gene61670:CDS | 25.0% |
| AAAATGCTTGTACTTTGACT+TGG | + | chr1.3:9357385-9357404 | MS.gene61670:CDS | 30.0% | |
| AAATGATCATCAGTAACAAC+GGG | + | chr1.3:9356617-9356636 | MS.gene61670:intron | 30.0% | |
| AACAATCTTACCTTTACTTC+AGG | - | chr1.3:9357488-9357507 | None:intergenic | 30.0% | |
| AACATGCTTCAATTCAAAAC+AGG | + | chr1.3:9357601-9357620 | MS.gene61670:intron | 30.0% | |
| AGCATGCAAACTATAGATTT+CGG | - | chr1.3:9357942-9357961 | None:intergenic | 30.0% | |
| ATAGTGAGAAGAAGGTTAAT+TGG | + | chr1.3:9356896-9356915 | MS.gene61670:CDS | 30.0% | |
| ATTGAATGATTTGAAGAGAG+AGG | - | chr1.3:9356377-9356396 | None:intergenic | 30.0% | |
| CCTAAAGTAACATACATGAT+TGG | + | chr1.3:9356745-9356764 | MS.gene61670:intron | 30.0% | |
| CTATAGATTTCGGAACAAAA+TGG | - | chr1.3:9357932-9357951 | None:intergenic | 30.0% | |
| CTCTTCAAATCATTCAATCT+TGG | + | chr1.3:9356379-9356398 | MS.gene61670:CDS | 30.0% | |
| GCTTATCTGACAACAATAAA+AGG | - | chr1.3:9358154-9358173 | None:intergenic | 30.0% | |
| TATGTTCCTAGTTACGATAT+TGG | + | chr1.3:9357633-9357652 | MS.gene61670:intron | 30.0% | |
| TGACCCCATAAAAATATTTG+TGG | - | chr1.3:9357003-9357022 | None:intergenic | 30.0% | |
| TTCCATGTTGCAAATGAAAA+GGG | + | chr1.3:9357036-9357055 | MS.gene61670:CDS | 30.0% | |
| TTGAATGATTTGAAGAGAGA+GGG | - | chr1.3:9356376-9356395 | None:intergenic | 30.0% | |
| TTTCCATGTTGCAAATGAAA+AGG | + | chr1.3:9357035-9357054 | MS.gene61670:CDS | 30.0% | |
| ! | ACAAGCATTTTCCTAAATCA+GGG | - | chr1.3:9357376-9357395 | None:intergenic | 30.0% |
| ! | ACAGACCTTAGTTTAAAATC+AGG | - | chr1.3:9357174-9357193 | None:intergenic | 30.0% |
| ! | ATCTCCCTGATTTTAAACTA+AGG | + | chr1.3:9357166-9357185 | MS.gene61670:CDS | 30.0% |
| ! | CAGACCTTAGTTTAAAATCA+GGG | - | chr1.3:9357173-9357192 | None:intergenic | 30.0% |
| ! | TACAAGCATTTTCCTAAATC+AGG | - | chr1.3:9357377-9357396 | None:intergenic | 30.0% |
| ! | TCAACTGTGTCATTAAATAG+AGG | + | chr1.3:9358004-9358023 | MS.gene61670:intron | 30.0% |
| ! | TTGAATTGAAGCATGTTTTG+AGG | - | chr1.3:9357598-9357617 | None:intergenic | 30.0% |
| !! | CCAATCATGTATGTTACTTT+AGG | - | chr1.3:9356748-9356767 | None:intergenic | 30.0% |
| !! | CCACCACAAATATTTTTATG+GGG | + | chr1.3:9356997-9357016 | MS.gene61670:CDS | 30.0% |
| !!! | GTTGATTGTATTTTAATCCG+TGG | + | chr1.3:9358178-9358197 | MS.gene61670:intron | 30.0% |
| !!! | TATTGGGATATTTTGATTCG+AGG | - | chr1.3:9357511-9357530 | None:intergenic | 30.0% |
| AAACCAAAAGCAGTGATTGT+TGG | + | chr1.3:9356225-9356244 | MS.gene61670:CDS | 35.0% | |
| AAAGGTCATGAAAGAAACGA+AGG | + | chr1.3:9358303-9358322 | MS.gene61670:CDS | 35.0% | |
| AAGGCTAAAGTTGTGAAAAC+TGG | + | chr1.3:9357072-9357091 | MS.gene61670:CDS | 35.0% | |
| ACCAAGAAGCAGAAAAAGTA+TGG | + | chr1.3:9358266-9358285 | MS.gene61670:CDS | 35.0% | |
| AGGCAAATGCATAGAGAAAT+GGG | + | chr1.3:9358471-9358490 | MS.gene61670:CDS | 35.0% | |
| CATGACAATATTAGATGCAG+CGG | + | chr1.3:9358444-9358463 | MS.gene61670:CDS | 35.0% | |
| CCCCATAAAAATATTTGTGG+TGG | - | chr1.3:9357000-9357019 | None:intergenic | 35.0% | |
| CGTGGTTTCAAAATTCTTCA+GGG | + | chr1.3:9358196-9358215 | MS.gene61670:intron | 35.0% | |
| GATCAAAAGGATCTCTATCA+GGG | - | chr1.3:9358612-9358631 | None:intergenic | 35.0% | |
| TAAAGTTGTGAAAACTGGAG+AGG | + | chr1.3:9357077-9357096 | MS.gene61670:CDS | 35.0% | |
| TACACTGATGTGGCAATAAA+AGG | - | chr1.3:9357966-9357985 | None:intergenic | 35.0% | |
| TAGGCAAATGCATAGAGAAA+TGG | + | chr1.3:9358470-9358489 | MS.gene61670:CDS | 35.0% | |
| TCATCCACTAACTATTGATC+AGG | + | chr1.3:9356437-9356456 | MS.gene61670:CDS | 35.0% | |
| TCTTAATCTTGAACAGAACC+TGG | + | chr1.3:9356867-9356886 | MS.gene61670:intron | 35.0% | |
| TTGACCTGATCAATAGTTAG+TGG | - | chr1.3:9356444-9356463 | None:intergenic | 35.0% | |
| TTGTCATGTTTGTGCTTCTA+AGG | - | chr1.3:9358432-9358451 | None:intergenic | 35.0% | |
| ! | ACATACATGATTGGTTGTGT+TGG | + | chr1.3:9356754-9356773 | MS.gene61670:intron | 35.0% |
| ! | ACTTTAGCCTTTACAATGAC+AGG | - | chr1.3:9357063-9357082 | None:intergenic | 35.0% |
| ! | ATCAATAGTTAGTGGATGAG+TGG | - | chr1.3:9356436-9356455 | None:intergenic | 35.0% |
| ! | CATATATGATAGTGATCCCT+TGG | + | chr1.3:9358342-9358361 | MS.gene61670:CDS | 35.0% |
| ! | CTTCTCTTTGATTTAAAGGG+CGG | - | chr1.3:9357834-9357853 | None:intergenic | 35.0% |
| ! | GCTTTTCCAATATCGTAACT+AGG | - | chr1.3:9357642-9357661 | None:intergenic | 35.0% |
| ! | TGGAAAAGCTTTCTAGCAAA+GGG | + | chr1.3:9357653-9357672 | MS.gene61670:intron | 35.0% |
| ! | TTGGAAAAGCTTTCTAGCAA+AGG | + | chr1.3:9357652-9357671 | MS.gene61670:intron | 35.0% |
| !! | TTGTTCTGCTTAGTTTGCTT+GGG | + | chr1.3:9357745-9357764 | MS.gene61670:intron | 35.0% |
| !! | TTTGTTCTGCTTAGTTTGCT+TGG | + | chr1.3:9357744-9357763 | MS.gene61670:intron | 35.0% |
| !!! | CCTGAAGAATTTTGAAACCA+CGG | - | chr1.3:9358198-9358217 | None:intergenic | 35.0% |
| !!! | TCCATACTTTTTCTGCTTCT+TGG | - | chr1.3:9358270-9358289 | None:intergenic | 35.0% |
| AAACTTCAGAGCAGCACATT+GGG | + | chr1.3:9356942-9356961 | MS.gene61670:CDS | 40.0% | |
| AAAGGGTCCTGTCATTGTAA+AGG | + | chr1.3:9357053-9357072 | MS.gene61670:CDS | 40.0% | |
| AACCATCACAGGTATCAAGA+AGG | + | chr1.3:9357346-9357365 | MS.gene61670:CDS | 40.0% | |
| AATCAGGGAGATATTTCCGA+CGG | - | chr1.3:9357158-9357177 | None:intergenic | 40.0% | |
| ATAGCAGCACTATAGTGTAG+CGG | + | chr1.3:9358031-9358050 | MS.gene61670:intron | 40.0% | |
| ATATTAGATGCAGCGGTGTT+AGG | + | chr1.3:9358451-9358470 | MS.gene61670:CDS | 40.0% | |
| ATCCCAACCAGCTAAGATAA+GGG | - | chr1.3:9356283-9356302 | None:intergenic | 40.0% | |
| ATCCCTTGGAGAAGATATTC+TGG | + | chr1.3:9358356-9358375 | MS.gene61670:CDS | 40.0% | |
| ATGGATTCCTGAGTTAGCAA+AGG | + | chr1.3:9358285-9358304 | MS.gene61670:CDS | 40.0% | |
| CCGTGGTTTCAAAATTCTTC+AGG | + | chr1.3:9358195-9358214 | MS.gene61670:intron | 40.0% | |
| GAGAATTCAGAAACCATCAC+AGG | + | chr1.3:9357335-9357354 | MS.gene61670:CDS | 40.0% | |
| GGAAGCTGAAAAGCTTGAAT+CGG | + | chr1.3:9358492-9358511 | MS.gene61670:CDS | 40.0% | |
| GGAGAGGTTATTGAGATTGT+AGG | + | chr1.3:9357093-9357112 | MS.gene61670:CDS | 40.0% | |
| GGATCAAAAGGATCTCTATC+AGG | - | chr1.3:9358613-9358632 | None:intergenic | 40.0% | |
| TAAACTTCAGAGCAGCACAT+TGG | + | chr1.3:9356941-9356960 | MS.gene61670:CDS | 40.0% | |
| TCCCAGAATATCTTCTCCAA+GGG | - | chr1.3:9358361-9358380 | None:intergenic | 40.0% | |
| TCCCTTGGAGAAGATATTCT+GGG | + | chr1.3:9358357-9358376 | MS.gene61670:CDS | 40.0% | |
| TCTTCTCACTATCAGTTACC+AGG | - | chr1.3:9356888-9356907 | None:intergenic | 40.0% | |
| TTCATGACCTTTGCTAACTC+AGG | - | chr1.3:9358295-9358314 | None:intergenic | 40.0% | |
| TTCGGAACAAAATGGAGAGT+AGG | - | chr1.3:9357924-9357943 | None:intergenic | 40.0% | |
| ! | AAGAAGGCATACCCTGATTT+AGG | + | chr1.3:9357362-9357381 | MS.gene61670:CDS | 40.0% |
| ! | AGAACTTGCTTGGAAGTAAC+TGG | - | chr1.3:9358547-9358566 | None:intergenic | 40.0% |
| ! | GACCCTTTTCATTTGCAACA+TGG | - | chr1.3:9357041-9357060 | None:intergenic | 40.0% |
| ! | GGTAACTGATAGTGAGAAGA+AGG | + | chr1.3:9356888-9356907 | MS.gene61670:CDS | 40.0% |
| ! | TGAAAAGCTTGAATCGGCTT+TGG | + | chr1.3:9358498-9358517 | MS.gene61670:CDS | 40.0% |
| !! | ATTCTGGGACAATGTGGTAT+TGG | + | chr1.3:9358372-9358391 | MS.gene61670:CDS | 40.0% |
| !! | GAAGATATTCTGGGACAATG+TGG | + | chr1.3:9358366-9358385 | MS.gene61670:CDS | 40.0% |
| !! | TGTTCTGCTTAGTTTGCTTG+GGG | + | chr1.3:9357746-9357765 | MS.gene61670:intron | 40.0% |
| !! | TTAGTTTGCTTGGGGATGTA+AGG | + | chr1.3:9357754-9357773 | MS.gene61670:intron | 40.0% |
| !! | TTTGTGCTTCTAAGGTAGTG+AGG | - | chr1.3:9358424-9358443 | None:intergenic | 40.0% |
| !!! | AGGTGGTTTTTTCAAGGACA+AGG | - | chr1.3:9356308-9356327 | None:intergenic | 40.0% |
| !!! | AGTTACTTTTGTCGTCACAG+AGG | - | chr1.3:9358224-9358243 | None:intergenic | 40.0% |
| AACTTCAGAGCAGCACATTG+GGG | + | chr1.3:9356943-9356962 | MS.gene61670:CDS | 45.0% | |
| ATGCCCTTATCTTAGCTGGT+TGG | + | chr1.3:9356277-9356296 | MS.gene61670:CDS | 45.0% | |
| CATCCCAACCAGCTAAGATA+AGG | - | chr1.3:9356284-9356303 | None:intergenic | 45.0% | |
| CCAAAAGCAGTGATTGTTGG+AGG | + | chr1.3:9356228-9356247 | MS.gene61670:CDS | 45.0% | |
| CCAAGCAAGTTCTTCATGCA+AGG | + | chr1.3:9358554-9358573 | MS.gene61670:CDS | 45.0% | |
| CTTACCTTTACTTCAGGCTC+TGG | - | chr1.3:9357482-9357501 | None:intergenic | 45.0% | |
| CTTGCAGACTTGGGATCAAA+AGG | - | chr1.3:9358625-9358644 | None:intergenic | 45.0% | |
| GCCACTGAACAAACACTTCA+GGG | - | chr1.3:9356538-9356557 | None:intergenic | 45.0% | |
| GTCCCAGAATATCTTCTCCA+AGG | - | chr1.3:9358362-9358381 | None:intergenic | 45.0% | |
| GTGATTGTTGGAGGTAGCAT+TGG | + | chr1.3:9356237-9356256 | MS.gene61670:CDS | 45.0% | |
| GTGTTGTGTAGGAATTGTGG+TGG | - | chr1.3:9356414-9356433 | None:intergenic | 45.0% | |
| GTTGTCTCTCTTCAATCCGT+CGG | + | chr1.3:9357139-9357158 | MS.gene61670:CDS | 45.0% | |
| TAACACACTGTGTGTACCTG+AGG | - | chr1.3:9357411-9357430 | None:intergenic | 45.0% | |
| TAAGGTAGTGAGGCGTAGTA+GGG | - | chr1.3:9358414-9358433 | None:intergenic | 45.0% | |
| TCATCAGTAACAACGGGACA+AGG | + | chr1.3:9356623-9356642 | MS.gene61670:intron | 45.0% | |
| TCCTCTTTCCTTGCAGACTT+GGG | - | chr1.3:9358634-9358653 | None:intergenic | 45.0% | |
| TGCCACTGAACAAACACTTC+AGG | - | chr1.3:9356539-9356558 | None:intergenic | 45.0% | |
| TGCCCTTATCTTAGCTGGTT+GGG | + | chr1.3:9356278-9356297 | MS.gene61670:CDS | 45.0% | |
| TGCCTTCTTGATACCTGTGA+TGG | - | chr1.3:9357351-9357370 | None:intergenic | 45.0% | |
| ! | ATTGTTGGAGGTAGCATTGG+AGG | + | chr1.3:9356240-9356259 | MS.gene61670:CDS | 45.0% |
| ! | CCTCCAACAATCACTGCTTT+TGG | - | chr1.3:9356231-9356250 | None:intergenic | 45.0% |
| ! | CCTTGCATGAAGAACTTGCT+TGG | - | chr1.3:9358557-9358576 | None:intergenic | 45.0% |
| ! | CTTTTGATCCCAAGTCTGCA+AGG | + | chr1.3:9358623-9358642 | MS.gene61670:CDS | 45.0% |
| ! | GATTTGCTTGTTGCTGCAGA+TGG | + | chr1.3:9357117-9357136 | MS.gene61670:CDS | 45.0% |
| ! | TCCCTGAAGTGTTTGTTCAG+TGG | + | chr1.3:9356534-9356553 | MS.gene61670:intron | 45.0% |
| ! | TGAAGTGTTTGTTCAGTGGC+AGG | + | chr1.3:9356538-9356557 | MS.gene61670:intron | 45.0% |
| ! | TTGTTGGAGGTAGCATTGGA+GGG | + | chr1.3:9356241-9356260 | MS.gene61670:CDS | 45.0% |
| !! | GGACAATGTGGTATTGGTAG+GGG | + | chr1.3:9358378-9358397 | MS.gene61670:CDS | 45.0% |
| !! | GGGACAATGTGGTATTGGTA+GGG | + | chr1.3:9358377-9358396 | MS.gene61670:CDS | 45.0% |
| !! | GTGGTGTTGTGTAGGAATTG+TGG | - | chr1.3:9356417-9356436 | None:intergenic | 45.0% |
| !! | TGGGACAATGTGGTATTGGT+AGG | + | chr1.3:9358376-9358395 | MS.gene61670:CDS | 45.0% |
| !! | TTGTACTTTGACTTGGCCTC+AGG | + | chr1.3:9357392-9357411 | MS.gene61670:CDS | 45.0% |
| !!! | GAGGTGAGGTGGTTTTTTCA+AGG | - | chr1.3:9356314-9356333 | None:intergenic | 45.0% |
| AAAACCACCTCACCTCCAAC+TGG | + | chr1.3:9356318-9356337 | MS.gene61670:CDS | 50.0% | |
| CGGTCGCATAAAACAAGGTC+TGG | + | chr1.3:9358582-9358601 | MS.gene61670:CDS | 50.0% | |
| CGTCTCGGTCGCATAAAACA+AGG | + | chr1.3:9358577-9358596 | MS.gene61670:CDS | 50.0% | |
| CTAAGGTAGTGAGGCGTAGT+AGG | - | chr1.3:9358415-9358434 | None:intergenic | 50.0% | |
| CTCCTCTTTCCTTGCAGACT+TGG | - | chr1.3:9358635-9358654 | None:intergenic | 50.0% | |
| GCACATGCCCTTATCTTAGC+TGG | + | chr1.3:9356273-9356292 | MS.gene61670:CDS | 50.0% | |
| GCACATTGGGGTGATCTTCA+TGG | + | chr1.3:9356955-9356974 | MS.gene61670:CDS | 50.0% | |
| TCAGCCAGAGCCTGAAGTAA+AGG | + | chr1.3:9357475-9357494 | MS.gene61670:CDS | 50.0% | |
| TCCCAAGTCTGCAAGGAAAG+AGG | + | chr1.3:9358630-9358649 | MS.gene61670:CDS | 50.0% | |
| ! | GTTCTTCATGCAAGGCGTCT+CGG | + | chr1.3:9358562-9358581 | MS.gene61670:CDS | 50.0% |
| !! | GTGGATGAGTGGTGTTGTGT+AGG | - | chr1.3:9356425-9356444 | None:intergenic | 50.0% |
| !! | TGCAAGGAAAGAGGAGTGTC+AGG | + | chr1.3:9358639-9358658 | MS.gene61670:CDS | 50.0% |
| ACTGGAAGTCCTACTGGTGC+AGG | + | chr1.3:9356336-9356355 | MS.gene61670:CDS | 55.0% | |
| ACTTCCAGTTGGAGGTGAGG+TGG | - | chr1.3:9356325-9356344 | None:intergenic | 55.0% | |
| AGGACTTCCAGTTGGAGGTG+AGG | - | chr1.3:9356328-9356347 | None:intergenic | 55.0% | |
| AGTCCAAGACCTGCACCAGT+AGG | - | chr1.3:9356348-9356367 | None:intergenic | 55.0% | |
| AGTCCTACTGGTGCAGGTCT+TGG | + | chr1.3:9356342-9356361 | MS.gene61670:CDS | 55.0% | |
| ATCCCCTGACTCCATCTGGT+GGG | + | chr1.3:9357792-9357811 | MS.gene61670:intron | 55.0% | |
| CCAGTAGGACTTCCAGTTGG+AGG | - | chr1.3:9356333-9356352 | None:intergenic | 55.0% | |
| CCTCCAACTGGAAGTCCTAC+TGG | + | chr1.3:9356330-9356349 | MS.gene61670:CDS | 55.0% | |
| GCACCAGTAGGACTTCCAGT+TGG | - | chr1.3:9356336-9356355 | None:intergenic | 55.0% | |
| TGTACAACGCTCCCACCAGA+TGG | - | chr1.3:9357806-9357825 | None:intergenic | 55.0% | |
| CACCAGATGGAGTCAGGGGA+TGG | - | chr1.3:9357793-9357812 | None:intergenic | 60.0% | |
| CACCATCCCCTGACTCCATC+TGG | + | chr1.3:9357788-9357807 | MS.gene61670:intron | 60.0% | |
| CAGATGGAGTCAGGGGATGG+TGG | - | chr1.3:9357790-9357809 | None:intergenic | 60.0% | |
| CATCCCCTGACTCCATCTGG+TGG | + | chr1.3:9357791-9357810 | MS.gene61670:intron | 60.0% | |
| CTCCCACCAGATGGAGTCAG+GGG | - | chr1.3:9357797-9357816 | None:intergenic | 60.0% | |
| GCTCCCACCAGATGGAGTCA+GGG | - | chr1.3:9357798-9357817 | None:intergenic | 60.0% | |
| CGCTCCCACCAGATGGAGTC+AGG | - | chr1.3:9357799-9357818 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 9356207 | 9358735 | 9356207 | ID=MS.gene61670 |
| chr1.3 | mRNA | 9356207 | 9358735 | 9356207 | ID=MS.gene61670.t1;Parent=MS.gene61670 |
| chr1.3 | exon | 9356207 | 9356458 | 9356207 | ID=MS.gene61670.t1.exon1;Parent=MS.gene61670.t1 |
| chr1.3 | CDS | 9356207 | 9356458 | 9356207 | ID=cds.MS.gene61670.t1;Parent=MS.gene61670.t1 |
| chr1.3 | exon | 9356883 | 9357191 | 9356883 | ID=MS.gene61670.t1.exon2;Parent=MS.gene61670.t1 |
| chr1.3 | CDS | 9356883 | 9357191 | 9356883 | ID=cds.MS.gene61670.t1;Parent=MS.gene61670.t1 |
| chr1.3 | exon | 9357323 | 9357496 | 9357323 | ID=MS.gene61670.t1.exon3;Parent=MS.gene61670.t1 |
| chr1.3 | CDS | 9357323 | 9357496 | 9357323 | ID=cds.MS.gene61670.t1;Parent=MS.gene61670.t1 |
| chr1.3 | exon | 9358217 | 9358735 | 9358217 | ID=MS.gene61670.t1.exon4;Parent=MS.gene61670.t1 |
| chr1.3 | CDS | 9358217 | 9358735 | 9358217 | ID=cds.MS.gene61670.t1;Parent=MS.gene61670.t1 |
| Gene Sequence |
| Protein sequence |
