Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62049.t1 | XP_003588697.1 | 98.2 | 386 | 7 | 0 | 1 | 386 | 21 | 406 | 3.00E-227 | 797.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62049.t1 | Q9LFM5 | 71.9 | 388 | 103 | 2 | 1 | 384 | 22 | 407 | 1.1e-164 | 580.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62049.t1 | G7I6C3 | 98.2 | 386 | 7 | 0 | 1 | 386 | 21 | 406 | 2.2e-227 | 797.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050020 | MS.gene62049 | 0.844741 | 6.27E-59 | -1.69E-46 |
| MS.gene050298 | MS.gene62049 | 0.845065 | 5.12E-59 | -1.69E-46 |
| MS.gene050563 | MS.gene62049 | 0.8892 | 3.00E-73 | -1.69E-46 |
| MS.gene050584 | MS.gene62049 | 0.815187 | 1.05E-51 | -1.69E-46 |
| MS.gene050585 | MS.gene62049 | 0.807834 | 4.17E-50 | -1.69E-46 |
| MS.gene050587 | MS.gene62049 | 0.809523 | 1.81E-50 | -1.69E-46 |
| MS.gene051199 | MS.gene62049 | 0.813444 | 2.55E-51 | -1.69E-46 |
| MS.gene05143 | MS.gene62049 | 0.844385 | 7.81E-59 | -1.69E-46 |
| MS.gene052142 | MS.gene62049 | 0.8492 | 3.77E-60 | -1.69E-46 |
| MS.gene052187 | MS.gene62049 | 0.816059 | 6.72E-52 | -1.69E-46 |
| MS.gene052456 | MS.gene62049 | 0.849124 | 3.95E-60 | -1.69E-46 |
| MS.gene053383 | MS.gene62049 | 0.885048 | 1.14E-71 | -1.69E-46 |
| MS.gene05456 | MS.gene62049 | 0.877402 | 6.47E-69 | -1.69E-46 |
| MS.gene054791 | MS.gene62049 | 0.807809 | 4.22E-50 | -1.69E-46 |
| MS.gene055359 | MS.gene62049 | 0.899027 | 2.97E-77 | -1.69E-46 |
| MS.gene057022 | MS.gene62049 | 0.812678 | 3.76E-51 | -1.69E-46 |
| MS.gene058918 | MS.gene62049 | 0.843539 | 1.32E-58 | -1.69E-46 |
| MS.gene059006 | MS.gene62049 | 0.852315 | 5.01E-61 | -1.69E-46 |
| MS.gene059632 | MS.gene62049 | 0.827299 | 1.69E-54 | -1.69E-46 |
| MS.gene059768 | MS.gene62049 | 0.85377 | 1.92E-61 | -1.69E-46 |
| MS.gene060691 | MS.gene62049 | 0.851371 | 9.27E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 60 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATTCAAGTTCTCAAATT+TGG | 0.134264 | 1.4:+9013562 | MS.gene62049:CDS |
| GTCATTGGTTGTGGGAATTC+TGG | 0.224967 | 1.4:+9013762 | MS.gene62049:CDS |
| GTTAGTTTCAAGCTTCTTCT+TGG | 0.280395 | 1.4:+9014679 | MS.gene62049:CDS |
| TAGCTATGGGATTATATAAA+TGG | 0.285172 | 1.4:+9014624 | MS.gene62049:CDS |
| AATTAAATCCGGTAACATTA+AGG | 0.303146 | 1.4:+9014805 | MS.gene62049:CDS |
| GTTGCAAGTTTGAGTTCTAT+TGG | 0.313027 | 1.4:-9014743 | None:intergenic |
| ATGTTTGGTTTCTCAACATA+TGG | 0.323559 | 1.4:+9014599 | MS.gene62049:CDS |
| TTCTGGAATGGAAGTCAGTT+TGG | 0.347203 | 1.4:+9013779 | MS.gene62049:CDS |
| CATACAAGTGATTATAAATC+TGG | 0.355020 | 1.4:+9013711 | MS.gene62049:CDS |
| GATGCAATAATCTTAGCAAC+AGG | 0.380414 | 1.4:+9015000 | MS.gene62049:CDS |
| TAATCACTTGTATGAGCAAC+AGG | 0.388008 | 1.4:-9013702 | None:intergenic |
| GTAACATACCTTAATGTTAC+CGG | 0.400738 | 1.4:-9014813 | None:intergenic |
| ATAGTAGGTGCTGGTCCTTC+AGG | 0.401110 | 1.4:+9013270 | None:intergenic |
| ACACAATGCTATGCCTCATT+TGG | 0.405714 | 1.4:+9013812 | MS.gene62049:CDS |
| CCTTGGCTTATTGTTGCTAC+TGG | 0.412409 | 1.4:+9013624 | MS.gene62049:CDS |
| TTAGTTTCAAGCTTCTTCTT+GGG | 0.427173 | 1.4:+9014680 | MS.gene62049:CDS |
| TGTTCCATACCATGAATTGT+TGG | 0.436540 | 1.4:-9013669 | None:intergenic |
| ATTCTTCCAAGAGATATGTT+TGG | 0.437726 | 1.4:+9014584 | MS.gene62049:CDS |
| GGTATCAAGAGGCCTAAAAC+TGG | 0.451158 | 1.4:+9014719 | MS.gene62049:CDS |
| ACAAGAGCAATGTGCCTACT+TGG | 0.453063 | 1.4:+9015025 | MS.gene62049:CDS |
| GTTTGAGGAAAACTCATCAT+AGG | 0.461046 | 1.4:-9013432 | None:intergenic |
| GAGAAACCAAACATATCTCT+TGG | 0.462714 | 1.4:-9014590 | None:intergenic |
| TTGGGAAACACCAATCACTA+TGG | 0.465852 | 1.4:+9014698 | MS.gene62049:CDS |
| ATAGAACTCAAACTTGCAAC+AGG | 0.466421 | 1.4:+9014746 | MS.gene62049:CDS |
| CAAATAGCACAAATTAAATC+CGG | 0.476052 | 1.4:+9014794 | MS.gene62049:CDS |
| CTGAAGATATTACTAATCAA+TGG | 0.476187 | 1.4:+9015700 | MS.gene62049:CDS |
| GTGAAAGAGATAACAAGAAA+TGG | 0.481980 | 1.4:+9014943 | MS.gene62049:CDS |
| GTGATTGCATAGCTTCACTA+TGG | 0.487978 | 1.4:+9013352 | MS.gene62049:CDS |
| ATCACTTTGATATTCATCCT+AGG | 0.490915 | 1.4:+9013511 | MS.gene62049:CDS |
| CCTCTTGATACCATAGTGAT+TGG | 0.496998 | 1.4:-9014708 | None:intergenic |
| CCCTTTCCTCATGGTTGGAA+AGG | 0.498580 | 1.4:+9015603 | MS.gene62049:CDS |
| CTCAACATATGGAATAGCTA+TGG | 0.500774 | 1.4:+9014610 | MS.gene62049:CDS |
| AAACACCCTTTCCTCATGGT+TGG | 0.503476 | 1.4:+9015598 | MS.gene62049:CDS |
| CCTTTCCAACCATGAGGAAA+GGG | 0.506085 | 1.4:-9015603 | None:intergenic |
| ACATCAGTTCATTTCCTACA+TGG | 0.512049 | 1.4:+9013476 | MS.gene62049:CDS |
| TCAACATATGGAATAGCTAT+GGG | 0.521973 | 1.4:+9014611 | MS.gene62049:CDS |
| GAGTTTCGTGCAACCAAATG+AGG | 0.533241 | 1.4:-9013825 | None:intergenic |
| TTCAAGTTCTCAAATTTGGA+TGG | 0.536810 | 1.4:+9013566 | MS.gene62049:CDS |
| AAAACTCCTGTACTTGATGT+TGG | 0.551364 | 1.4:+9014770 | MS.gene62049:CDS |
| GGATACTTAGGAAATGTTTG+AGG | 0.552505 | 1.4:-9013447 | None:intergenic |
| ACCTTTCCAACCATGAGGAA+AGG | 0.554382 | 1.4:-9015604 | None:intergenic |
| GAGCAAGGATTGTATACAGT+GGG | 0.564264 | 1.4:+9015627 | MS.gene62049:CDS |
| CTTCTCTCAAGAATGAGACT+TGG | 0.577619 | 1.4:-9013330 | None:intergenic |
| TTCACAAGAAGAGGTCTACA+TGG | 0.580526 | 1.4:+9015651 | MS.gene62049:CDS |
| AATATCAAAGTGATCAGCAT+AGG | 0.584130 | 1.4:-9013502 | None:intergenic |
| ATTTGACCAACATCAAGTAC+AGG | 0.585749 | 1.4:-9014776 | None:intergenic |
| CAATGTGCCTACTTGGCTCA+AGG | 0.592907 | 1.4:+9015032 | MS.gene62049:CDS |
| AGAACAGTTTGATTAAACCT+AGG | 0.595686 | 1.4:-9013528 | None:intergenic |
| ACAGTGGGTTTCACAAGAAG+AGG | 0.597945 | 1.4:+9015642 | MS.gene62049:CDS |
| CATGGTTGGAAAGGTGAGCA+AGG | 0.614511 | 1.4:+9015612 | MS.gene62049:CDS |
| TGGTTGTGGGAATTCTGGAA+TGG | 0.619937 | 1.4:+9013767 | MS.gene62049:CDS |
| GCTGCTTGTTTATCAGAACA+AGG | 0.634289 | 1.4:+9013303 | MS.gene62049:CDS |
| TGCTCACCTTTCCAACCATG+AGG | 0.637968 | 1.4:-9015609 | None:intergenic |
| TTAATATTGTAGGTGATGGA+AGG | 0.640132 | 1.4:+9014919 | MS.gene62049:intron |
| CCAATCACTATGGTATCAAG+AGG | 0.641108 | 1.4:+9014708 | MS.gene62049:CDS |
| CCAGTAGCAACAATAAGCCA+AGG | 0.647996 | 1.4:-9013624 | None:intergenic |
| GCAGCTACTGCTATACCTGA+AGG | 0.661207 | 1.4:-9013285 | None:intergenic |
| ATGCAATAATCTTAGCAACA+GGG | 0.685349 | 1.4:+9015001 | MS.gene62049:CDS |
| ATCAGCATAGGATTCCATGT+AGG | 0.688016 | 1.4:-9013490 | None:intergenic |
| TGAGCAAGGATTGTATACAG+TGG | 0.697920 | 1.4:+9015626 | MS.gene62049:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATATTAATAAATTTATT+AGG | + | chr1.4:9014841-9014860 | MS.gene62049:intron | 0.0% |
| !! | AAATAAATATTAAATGATGA+AGG | - | chr1.4:9014182-9014201 | None:intergenic | 10.0% |
| !! | TTGATATTATAAAAAAAATG+CGG | + | chr1.4:9013893-9013912 | MS.gene62049:intron | 10.0% |
| !!! | ATTTTTTTTTTATTGATTCA+GGG | + | chr1.4:9015543-9015562 | MS.gene62049:intron | 10.0% |
| !!! | TATTTTTTTTTTATTGATTC+AGG | + | chr1.4:9015542-9015561 | MS.gene62049:intron | 10.0% |
| !!! | TTTGATATGTATATTTTTTT+AGG | + | chr1.4:9014876-9014895 | MS.gene62049:intron | 10.0% |
| !! | ATTATTAAAATTACCCAAAT+GGG | - | chr1.4:9014499-9014518 | None:intergenic | 15.0% |
| !!! | AAAGAATAGTACTTTTTAAA+AGG | - | chr1.4:9015419-9015438 | None:intergenic | 15.0% |
| !!! | AAGAATAGTACTTTTTAAAA+GGG | - | chr1.4:9015418-9015437 | None:intergenic | 15.0% |
| !!! | GCAATATTTTATATGATTTA+AGG | + | chr1.4:9014556-9014575 | MS.gene62049:intron | 15.0% |
| !! | AAAGAATAAAATCAGTTTCT+TGG | + | chr1.4:9015193-9015212 | MS.gene62049:intron | 20.0% |
| !! | AAATGACAATTAAAAAGGAA+CGG | + | chr1.4:9014313-9014332 | MS.gene62049:intron | 20.0% |
| !! | ATTGAAATTCGAAAGAAAAA+AGG | - | chr1.4:9013860-9013879 | None:intergenic | 20.0% |
| !! | ATTGTTTAGTACTTAAAATG+AGG | + | chr1.4:9014453-9014472 | MS.gene62049:intron | 20.0% |
| !! | GATTATTAAAATTACCCAAA+TGG | - | chr1.4:9014500-9014519 | None:intergenic | 20.0% |
| !! | TAAATAATCAAGGGTAATAA+AGG | + | chr1.4:9014222-9014241 | MS.gene62049:intron | 20.0% |
| !! | TTCTGAGTACAAAAATAAAA+AGG | + | chr1.4:9013734-9013753 | MS.gene62049:CDS | 20.0% |
| !! | TTGAAATTCGAAAGAAAAAA+GGG | - | chr1.4:9013859-9013878 | None:intergenic | 20.0% |
| !!! | AACTTGTCTACTAATTTTAA+TGG | - | chr1.4:9014653-9014672 | None:intergenic | 20.0% |
| !!! | AATGATTTTTTCACTAAAGA+TGG | + | chr1.4:9015567-9015586 | MS.gene62049:CDS | 20.0% |
| !!! | ATAAAACAGTACTAAACTTT+TGG | + | chr1.4:9015444-9015463 | MS.gene62049:intron | 20.0% |
| !!! | ATATGTTATTTTTTCCCATT+TGG | + | chr1.4:9014482-9014501 | MS.gene62049:intron | 20.0% |
| !!! | GTACAAAAATAAAAAGGTTT+TGG | + | chr1.4:9013740-9013759 | MS.gene62049:CDS | 20.0% |
| !!! | TAGGTAAATGAAGTTTTAAA+CGG | - | chr1.4:9013395-9013414 | None:intergenic | 20.0% |
| !!! | TATGTATATTTTTTTAGGCT+AGG | + | chr1.4:9014881-9014900 | MS.gene62049:intron | 20.0% |
| !!! | TATGTTATTTTTTCCCATTT+GGG | + | chr1.4:9014483-9014502 | MS.gene62049:intron | 20.0% |
| ! | AAAAAAAATGCGGTTTAATG+TGG | + | chr1.4:9013903-9013922 | MS.gene62049:intron | 25.0% |
| ! | AAAATCACGACAAAAAAAGA+TGG | - | chr1.4:9014009-9014028 | None:intergenic | 25.0% |
| ! | AATTAAATCCGGTAACATTA+AGG | + | chr1.4:9014805-9014824 | MS.gene62049:CDS | 25.0% |
| ! | CAAATAGCACAAATTAAATC+CGG | + | chr1.4:9014794-9014813 | MS.gene62049:CDS | 25.0% |
| ! | CATACAAGTGATTATAAATC+TGG | + | chr1.4:9013711-9013730 | MS.gene62049:CDS | 25.0% |
| ! | CTGAAGATATTACTAATCAA+TGG | + | chr1.4:9015700-9015719 | MS.gene62049:CDS | 25.0% |
| ! | CTGCAAAATGACAATTAAAA+AGG | + | chr1.4:9014308-9014327 | MS.gene62049:intron | 25.0% |
| ! | TAGCTATGGGATTATATAAA+TGG | + | chr1.4:9014624-9014643 | MS.gene62049:CDS | 25.0% |
| ! | TCTCTGCAATAAATAATCAA+GGG | + | chr1.4:9014213-9014232 | MS.gene62049:intron | 25.0% |
| ! | TTAATACATGTTTCGATTCA+TGG | + | chr1.4:9013939-9013958 | MS.gene62049:intron | 25.0% |
| ! | TTGATTAATATTGTAGGTGA+TGG | + | chr1.4:9014915-9014934 | MS.gene62049:intron | 25.0% |
| ! | TTGGGATTGATTAATATTGT+AGG | + | chr1.4:9014909-9014928 | MS.gene62049:intron | 25.0% |
| ! | TTTAATAAGGTCACTCATAA+AGG | + | chr1.4:9014389-9014408 | MS.gene62049:intron | 25.0% |
| !! | AAGAAATGGTGCAAAATTTT+TGG | + | chr1.4:9014957-9014976 | MS.gene62049:CDS | 25.0% |
| !! | ATTTTCAGTATTTTTCACCT+TGG | + | chr1.4:9013607-9013626 | MS.gene62049:CDS | 25.0% |
| !! | TGTTTTTCTCTTCTTTTACA+TGG | + | chr1.4:9015508-9015527 | MS.gene62049:intron | 25.0% |
| !! | TTGATTCAAGTTCTCAAATT+TGG | + | chr1.4:9013562-9013581 | MS.gene62049:CDS | 25.0% |
| !!! | AATAAAAAGGTTTTGGTCAT+TGG | + | chr1.4:9013747-9013766 | MS.gene62049:CDS | 25.0% |
| !!! | AATATCTTCAGCTATTTTGA+TGG | - | chr1.4:9015691-9015710 | None:intergenic | 25.0% |
| !!! | TTTTTAGGCTAGGATTAATT+GGG | + | chr1.4:9014891-9014910 | MS.gene62049:intron | 25.0% |
| !!! | TTTTTTAGGCTAGGATTAAT+TGG | + | chr1.4:9014890-9014909 | MS.gene62049:intron | 25.0% |
| AAGTGACCATTAAAAAGGAA+CGG | - | chr1.4:9014079-9014098 | None:intergenic | 30.0% | |
| AATATCAAAGTGATCAGCAT+AGG | - | chr1.4:9013505-9013524 | None:intergenic | 30.0% | |
| AGAACAGTTTGATTAAACCT+AGG | - | chr1.4:9013531-9013550 | None:intergenic | 30.0% | |
| ATCACTTTGATATTCATCCT+AGG | + | chr1.4:9013511-9013530 | MS.gene62049:CDS | 30.0% | |
| ATGCAATAATCTTAGCAACA+GGG | + | chr1.4:9015001-9015020 | MS.gene62049:CDS | 30.0% | |
| ATTCTTCCAAGAGATATGTT+TGG | + | chr1.4:9014584-9014603 | MS.gene62049:CDS | 30.0% | |
| CATGTATTAAAGATGCATCT+CGG | - | chr1.4:9013929-9013948 | None:intergenic | 30.0% | |
| CTCTCTGCAATAAATAATCA+AGG | + | chr1.4:9014212-9014231 | MS.gene62049:intron | 30.0% | |
| GGTAGTTCACAAAAATGTTT+AGG | - | chr1.4:9013414-9013433 | None:intergenic | 30.0% | |
| GTAACATACCTTAATGTTAC+CGG | - | chr1.4:9014816-9014835 | None:intergenic | 30.0% | |
| GTGAAAGAGATAACAAGAAA+TGG | + | chr1.4:9014943-9014962 | MS.gene62049:CDS | 30.0% | |
| TCAACATATGGAATAGCTAT+GGG | + | chr1.4:9014611-9014630 | MS.gene62049:CDS | 30.0% | |
| TTAGTTTCAAGCTTCTTCTT+GGG | + | chr1.4:9014680-9014699 | MS.gene62049:CDS | 30.0% | |
| ! | ATGTTTGGTTTCTCAACATA+TGG | + | chr1.4:9014599-9014618 | MS.gene62049:CDS | 30.0% |
| ! | GAAATGAACTGATGTTTTGT+AGG | - | chr1.4:9013471-9013490 | None:intergenic | 30.0% |
| ! | GATGGTTTTTGACAAAATTG+CGG | - | chr1.4:9013991-9014010 | None:intergenic | 30.0% |
| ! | TGATGTTTTGTAGGATACTT+AGG | - | chr1.4:9013462-9013481 | None:intergenic | 30.0% |
| ! | TTCAAGTTCTCAAATTTGGA+TGG | + | chr1.4:9013566-9013585 | MS.gene62049:CDS | 30.0% |
| ! | TTTTCCAACAATTCATGGTA+TGG | + | chr1.4:9013665-9013684 | MS.gene62049:CDS | 30.0% |
| !! | AATGGTGCAAAATTTTTGGA+TGG | + | chr1.4:9014961-9014980 | MS.gene62049:CDS | 30.0% |
| !! | ACTTGTGAGTTTGTTCTTTT+TGG | + | chr1.4:9014522-9014541 | MS.gene62049:intron | 30.0% |
| !! | ATTTTTGGATGGACAAGAAA+AGG | + | chr1.4:9014972-9014991 | MS.gene62049:CDS | 30.0% |
| !! | TAGCTAGAACTTTGAAATGA+CGG | - | chr1.4:9014042-9014061 | None:intergenic | 30.0% |
| !! | TCCTTTTTAATGGTCACTTT+TGG | + | chr1.4:9014080-9014099 | MS.gene62049:intron | 30.0% |
| !! | TTAATATTGTAGGTGATGGA+AGG | + | chr1.4:9014919-9014938 | MS.gene62049:intron | 30.0% |
| !!! | ATGAAGTTTTAAACGGTCAT+AGG | - | chr1.4:9013388-9013407 | None:intergenic | 30.0% |
| !!! | CCTTTTTAATGGTCACTTTT+GGG | + | chr1.4:9014081-9014100 | MS.gene62049:intron | 30.0% |
| !!! | TTGTTCTTTTTGGCTAACTT+TGG | + | chr1.4:9014532-9014551 | MS.gene62049:intron | 30.0% |
| AAAACTCCTGTACTTGATGT+TGG | + | chr1.4:9014770-9014789 | MS.gene62049:CDS | 35.0% | |
| ACATCAGTTCATTTCCTACA+TGG | + | chr1.4:9013476-9013495 | MS.gene62049:CDS | 35.0% | |
| ATAGAACTCAAACTTGCAAC+AGG | + | chr1.4:9014746-9014765 | MS.gene62049:CDS | 35.0% | |
| ATTTGACCAACATCAAGTAC+AGG | - | chr1.4:9014779-9014798 | None:intergenic | 35.0% | |
| CCATGAATTGTTGGAAAAAC+AGG | - | chr1.4:9013663-9013682 | None:intergenic | 35.0% | |
| CCCAAAAGTGACCATTAAAA+AGG | - | chr1.4:9014084-9014103 | None:intergenic | 35.0% | |
| CTCAACATATGGAATAGCTA+TGG | + | chr1.4:9014610-9014629 | MS.gene62049:CDS | 35.0% | |
| CTTATGACCTATCACTATCT+AGG | + | chr1.4:9015108-9015127 | MS.gene62049:intron | 35.0% | |
| GAGAAACCAAACATATCTCT+TGG | - | chr1.4:9014593-9014612 | None:intergenic | 35.0% | |
| GATGCAATAATCTTAGCAAC+AGG | + | chr1.4:9015000-9015019 | MS.gene62049:CDS | 35.0% | |
| GGATACTTAGGAAATGTTTG+AGG | - | chr1.4:9013450-9013469 | None:intergenic | 35.0% | |
| GTTTGAGGAAAACTCATCAT+AGG | - | chr1.4:9013435-9013454 | None:intergenic | 35.0% | |
| TAATCACTTGTATGAGCAAC+AGG | - | chr1.4:9013705-9013724 | None:intergenic | 35.0% | |
| TGACAATTAAAAAGGAACGG+AGG | + | chr1.4:9014316-9014335 | MS.gene62049:intron | 35.0% | |
| TGTTCCATACCATGAATTGT+TGG | - | chr1.4:9013672-9013691 | None:intergenic | 35.0% | |
| TTTGACAAAATTGCGGTCAT+AGG | - | chr1.4:9013984-9014003 | None:intergenic | 35.0% | |
| ! | AGTTCTATTGGACCAGTTTT+AGG | - | chr1.4:9014734-9014753 | None:intergenic | 35.0% |
| ! | CATGGTATGGAACATTTTCA+TGG | + | chr1.4:9013678-9013697 | MS.gene62049:CDS | 35.0% |
| ! | GTTAGTTTCAAGCTTCTTCT+TGG | + | chr1.4:9014679-9014698 | MS.gene62049:CDS | 35.0% |
| ! | GTTGCAAGTTTGAGTTCTAT+TGG | - | chr1.4:9014746-9014765 | None:intergenic | 35.0% |
| ! | TTTTTAACCTTGAGCCAAGT+AGG | - | chr1.4:9015042-9015061 | None:intergenic | 35.0% |
| !! | CCTGTTTTTCCAACAATTCA+TGG | + | chr1.4:9013660-9013679 | MS.gene62049:CDS | 35.0% |
| ACACAATGCTATGCCTCATT+TGG | + | chr1.4:9013812-9013831 | MS.gene62049:CDS | 40.0% | |
| ACCTATCACTATCTAGGCTT+GGG | + | chr1.4:9015114-9015133 | MS.gene62049:intron | 40.0% | |
| ATCAGCATAGGATTCCATGT+AGG | - | chr1.4:9013493-9013512 | None:intergenic | 40.0% | |
| CCAATCACTATGGTATCAAG+AGG | + | chr1.4:9014708-9014727 | MS.gene62049:CDS | 40.0% | |
| CCTCTTGATACCATAGTGAT+TGG | - | chr1.4:9014711-9014730 | None:intergenic | 40.0% | |
| CTTCTCTCAAGAATGAGACT+TGG | - | chr1.4:9013333-9013352 | None:intergenic | 40.0% | |
| GAGCAAGGATTGTATACAGT+GGG | + | chr1.4:9015627-9015646 | MS.gene62049:CDS | 40.0% | |
| GCTGCTTGTTTATCAGAACA+AGG | + | chr1.4:9013303-9013322 | MS.gene62049:CDS | 40.0% | |
| GTGATTGCATAGCTTCACTA+TGG | + | chr1.4:9013352-9013371 | MS.gene62049:CDS | 40.0% | |
| TGACCATTAAAAAGGAACGG+AGG | - | chr1.4:9014076-9014095 | None:intergenic | 40.0% | |
| TGAGCAAGGATTGTATACAG+TGG | + | chr1.4:9015626-9015645 | MS.gene62049:CDS | 40.0% | |
| TTCACAAGAAGAGGTCTACA+TGG | + | chr1.4:9015651-9015670 | MS.gene62049:CDS | 40.0% | |
| TTGGGAAACACCAATCACTA+TGG | + | chr1.4:9014698-9014717 | MS.gene62049:CDS | 40.0% | |
| ! | CTTCCTCCGTTCCTTTTTAA+TGG | + | chr1.4:9014070-9014089 | MS.gene62049:intron | 40.0% |
| !! | AAGGTTTTGGTCATTGGTTG+TGG | + | chr1.4:9013753-9013772 | MS.gene62049:CDS | 40.0% |
| !! | AGGTTTTGGTCATTGGTTGT+GGG | + | chr1.4:9013754-9013773 | MS.gene62049:CDS | 40.0% |
| !! | TTCTGGAATGGAAGTCAGTT+TGG | + | chr1.4:9013779-9013798 | MS.gene62049:CDS | 40.0% |
| AAACACCCTTTCCTCATGGT+TGG | + | chr1.4:9015598-9015617 | MS.gene62049:CDS | 45.0% | |
| ACAAGAGCAATGTGCCTACT+TGG | + | chr1.4:9015025-9015044 | MS.gene62049:CDS | 45.0% | |
| ACCTTTCCAACCATGAGGAA+AGG | - | chr1.4:9015607-9015626 | None:intergenic | 45.0% | |
| CCAAAAACACCCTTTCCTCA+TGG | + | chr1.4:9015594-9015613 | MS.gene62049:CDS | 45.0% | |
| CCAGTAGCAACAATAAGCCA+AGG | - | chr1.4:9013627-9013646 | None:intergenic | 45.0% | |
| CCTTGGCTTATTGTTGCTAC+TGG | + | chr1.4:9013624-9013643 | MS.gene62049:CDS | 45.0% | |
| CCTTTCCAACCATGAGGAAA+GGG | - | chr1.4:9015606-9015625 | None:intergenic | 45.0% | |
| GACCTATCACTATCTAGGCT+TGG | + | chr1.4:9015113-9015132 | MS.gene62049:intron | 45.0% | |
| GAGTTTCGTGCAACCAAATG+AGG | - | chr1.4:9013828-9013847 | None:intergenic | 45.0% | |
| GGTATCAAGAGGCCTAAAAC+TGG | + | chr1.4:9014719-9014738 | MS.gene62049:CDS | 45.0% | |
| TCCCAAGCCTAGATAGTGAT+AGG | - | chr1.4:9015118-9015137 | None:intergenic | 45.0% | |
| ! | ACAGTGGGTTTCACAAGAAG+AGG | + | chr1.4:9015642-9015661 | MS.gene62049:CDS | 45.0% |
| ! | GTCATTGGTTGTGGGAATTC+TGG | + | chr1.4:9013762-9013781 | MS.gene62049:CDS | 45.0% |
| ! | TGGTTGTGGGAATTCTGGAA+TGG | + | chr1.4:9013767-9013786 | MS.gene62049:CDS | 45.0% |
| !!! | CCATGAGGAAAGGGTGTTTT+TGG | - | chr1.4:9015597-9015616 | None:intergenic | 45.0% |
| !! | TATTTAAATATTAAAAAAAG+TGG | - | chr1.4:9015226-9015245 | None:intergenic | 5.0% |
| !!! | TTATATTAATACTTTTAATA+AGG | + | chr1.4:9014376-9014395 | MS.gene62049:intron | 5.0% |
| CAATGTGCCTACTTGGCTCA+AGG | + | chr1.4:9015032-9015051 | MS.gene62049:CDS | 50.0% | |
| CATGGTTGGAAAGGTGAGCA+AGG | + | chr1.4:9015612-9015631 | MS.gene62049:CDS | 50.0% | |
| CCCTTTCCTCATGGTTGGAA+AGG | + | chr1.4:9015603-9015622 | MS.gene62049:CDS | 50.0% | |
| GCAGCTACTGCTATACCTGA+AGG | - | chr1.4:9013288-9013307 | None:intergenic | 50.0% | |
| TGCTCACCTTTCCAACCATG+AGG | - | chr1.4:9015612-9015631 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 9013277 | 9015782 | 9013277 | ID=MS.gene62049 |
| chr1.4 | mRNA | 9013277 | 9015782 | 9013277 | ID=MS.gene62049.t1;Parent=MS.gene62049 |
| chr1.4 | exon | 9013277 | 9013848 | 9013277 | ID=MS.gene62049.t1.exon1;Parent=MS.gene62049.t1 |
| chr1.4 | CDS | 9013277 | 9013848 | 9013277 | ID=cds.MS.gene62049.t1;Parent=MS.gene62049.t1 |
| chr1.4 | exon | 9014578 | 9014826 | 9014578 | ID=MS.gene62049.t1.exon2;Parent=MS.gene62049.t1 |
| chr1.4 | CDS | 9014578 | 9014826 | 9014578 | ID=cds.MS.gene62049.t1;Parent=MS.gene62049.t1 |
| chr1.4 | exon | 9014931 | 9015053 | 9014931 | ID=MS.gene62049.t1.exon3;Parent=MS.gene62049.t1 |
| chr1.4 | CDS | 9014931 | 9015053 | 9014931 | ID=cds.MS.gene62049.t1;Parent=MS.gene62049.t1 |
| chr1.4 | exon | 9015564 | 9015782 | 9015564 | ID=MS.gene62049.t1.exon4;Parent=MS.gene62049.t1 |
| chr1.4 | CDS | 9015564 | 9015782 | 9015564 | ID=cds.MS.gene62049.t1;Parent=MS.gene62049.t1 |
| Gene Sequence |
| Protein sequence |
