Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63003.t1 | XP_003589591.1 | 93.6 | 1187 | 67 | 2 | 1 | 1187 | 1 | 1178 | 0.00E+00 | 2140.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63003.t1 | Q96QE3 | 28.2 | 387 | 210 | 7 | 278 | 607 | 1044 | 1419 | 5.3e-29 | 131.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63003.t1 | G7I8G1 | 93.6 | 1187 | 67 | 2 | 1 | 1187 | 1 | 1178 | 0.0e+00 | 2140.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049378 | MS.gene63003 | 0.83686 | 7.31E-57 | -1.69E-46 |
| MS.gene050226 | MS.gene63003 | 0.839989 | 1.14E-57 | -1.69E-46 |
| MS.gene050227 | MS.gene63003 | 0.8366 | 8.51E-57 | -1.69E-46 |
| MS.gene050228 | MS.gene63003 | 0.838112 | 3.49E-57 | -1.69E-46 |
| MS.gene050442 | MS.gene63003 | 0.800079 | 1.71E-48 | -1.69E-46 |
| MS.gene050623 | MS.gene63003 | -0.852505 | 4.42E-61 | -1.69E-46 |
| MS.gene050762 | MS.gene63003 | 0.823815 | 1.13E-53 | -1.69E-46 |
| MS.gene050763 | MS.gene63003 | 0.823399 | 1.41E-53 | -1.69E-46 |
| MS.gene051210 | MS.gene63003 | 0.823628 | 1.25E-53 | -1.69E-46 |
| MS.gene051983 | MS.gene63003 | 0.813583 | 2.38E-51 | -1.69E-46 |
| MS.gene053811 | MS.gene63003 | 0.825686 | 4.09E-54 | -1.69E-46 |
| MS.gene054379 | MS.gene63003 | 0.814554 | 1.45E-51 | -1.69E-46 |
| MS.gene054468 | MS.gene63003 | 0.815701 | 8.08E-52 | -1.69E-46 |
| MS.gene054479 | MS.gene63003 | 0.804962 | 1.68E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene63003 | 0.83264 | 8.43E-56 | -1.69E-46 |
| MS.gene055926 | MS.gene63003 | 0.804962 | 1.68E-49 | -1.69E-46 |
| MS.gene056552 | MS.gene63003 | 0.811504 | 6.77E-51 | -1.69E-46 |
| MS.gene056979 | MS.gene63003 | 0.809127 | 2.21E-50 | -1.69E-46 |
| MS.gene059609 | MS.gene63003 | 0.823026 | 1.73E-53 | -1.69E-46 |
| MS.gene060084 | MS.gene63003 | 0.803355 | 3.63E-49 | -1.69E-46 |
| MS.gene060683 | MS.gene63003 | 0.806631 | 7.49E-50 | -1.69E-46 |
| MS.gene060685 | MS.gene63003 | 0.802871 | 4.57E-49 | -1.69E-46 |
| MS.gene060802 | MS.gene63003 | 0.832541 | 8.91E-56 | -1.69E-46 |
| MS.gene060803 | MS.gene63003 | 0.817501 | 3.19E-52 | -1.69E-46 |
| MS.gene060998 | MS.gene63003 | 0.826461 | 2.68E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63003.t1 | MTR_1g030410 | 93.597 | 1187 | 67 | 2 | 1 | 1187 | 1 | 1178 | 0.0 | 2303 |
| MS.gene63003.t1 | MTR_3g072400 | 54.366 | 1168 | 475 | 15 | 25 | 1177 | 70 | 1194 | 0.0 | 1117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63003.t1 | AT1G77620 | 32.625 | 1223 | 675 | 39 | 4 | 1173 | 23 | 1149 | 8.05e-136 | 442 |
Find 224 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAAAGTTATCAAAATTTA+AGG | 0.124385 | 1.3:+16315908 | None:intergenic |
| TCTACAGAATGTCTATTATT+TGG | 0.163033 | 1.3:+16310645 | None:intergenic |
| TTAGCATCTTCCGGCTTTAA+AGG | 0.204313 | 1.3:+16315747 | None:intergenic |
| GGCTTCTACTACAAATATTA+TGG | 0.214892 | 1.3:-16309648 | MS.gene63003:CDS |
| ACTGCTGTCAAGCAGTATTT+TGG | 0.216334 | 1.3:-16312398 | MS.gene63003:CDS |
| ACTACAAATATTATGGCTTT+TGG | 0.229067 | 1.3:-16309641 | MS.gene63003:CDS |
| GCTGAACATGCAGGGTATTA+TGG | 0.230458 | 1.3:-16309837 | MS.gene63003:intron |
| AGCAGAAGTGGGATCGAAAT+TGG | 0.230948 | 1.3:-16309708 | MS.gene63003:CDS |
| TAAGGTGGAAAAGAAATTTA+AGG | 0.235150 | 1.3:-16316662 | MS.gene63003:CDS |
| AATCCTCTGAAATTGAAATT+TGG | 0.243694 | 1.3:+16309321 | None:intergenic |
| TTTGGTGAGCTACTGCATTC+TGG | 0.246063 | 1.3:-16310528 | MS.gene63003:CDS |
| ACCAGTCACGCAAGAAATTC+AGG | 0.253423 | 1.3:+16315041 | None:intergenic |
| TGTAGTCTACAAAAGTTATT+TGG | 0.257206 | 1.3:+16311695 | None:intergenic |
| CCATTCTGCATCTTCAGTTC+TGG | 0.277127 | 1.3:-16311449 | MS.gene63003:CDS |
| TATTTCTCTTGGAGAAGATT+TGG | 0.284568 | 1.3:+16310209 | None:intergenic |
| TCGGAAACAAATCTTGATTC+TGG | 0.296800 | 1.3:+16310408 | None:intergenic |
| TCTGAGTTATATAGTTGTTC+TGG | 0.300439 | 1.3:-16310744 | MS.gene63003:CDS |
| ACTATAGCTACTCATGGTTT+TGG | 0.301974 | 1.3:+16309595 | None:intergenic |
| AAACCTCAAACCCTTGTTCT+TGG | 0.302769 | 1.3:+16314130 | None:intergenic |
| TGTTGATTCTAGTCCATCTA+TGG | 0.308758 | 1.3:-16310091 | MS.gene63003:CDS |
| GATGAAGGCAGTACTGTATC+AGG | 0.309635 | 1.3:-16315551 | MS.gene63003:CDS |
| AAGAAAGTGCAGACATTATA+TGG | 0.315116 | 1.3:-16311053 | MS.gene63003:CDS |
| TTATTTGAGCAGAGGTAAAA+TGG | 0.324209 | 1.3:-16309141 | MS.gene63003:CDS |
| ATCCACGATCTTCAGGAAAA+AGG | 0.325167 | 1.3:+16311882 | None:intergenic |
| GACTTCGTTCTCAATTAGTT+TGG | 0.333349 | 1.3:+16310953 | None:intergenic |
| AGCTATGCCAGTACGTCTTT+TGG | 0.333721 | 1.3:-16310546 | MS.gene63003:CDS |
| TAATTAAAAGAACATTCTTC+AGG | 0.338128 | 1.3:+16314879 | None:intergenic |
| GAGTCTACAGTTGTGTCTTC+TGG | 0.342872 | 1.3:-16310357 | MS.gene63003:CDS |
| TCAGTAGTCACCACCAAATC+TGG | 0.343163 | 1.3:+16310237 | None:intergenic |
| GGAAAAGAAATTTAAGGATT+CGG | 0.344345 | 1.3:-16316656 | MS.gene63003:CDS |
| ATTTCTCTTGGAGAAGATTT+GGG | 0.344875 | 1.3:+16310210 | None:intergenic |
| GAAAAGAAATTTAAGGATTC+GGG | 0.348265 | 1.3:-16316655 | MS.gene63003:CDS |
| CATACCACTTTAGCATCTTC+CGG | 0.349737 | 1.3:+16315738 | None:intergenic |
| CCCTGAATTTCTTGCGTGAC+TGG | 0.351843 | 1.3:-16315042 | MS.gene63003:CDS |
| TCATGTATTTGAAGATATTA+CGG | 0.359838 | 1.3:-16316569 | MS.gene63003:intron |
| TGTTGTTGTTGTTCAGCTAC+TGG | 0.375512 | 1.3:+16317332 | None:intergenic |
| CTGTTGCTGGTCAATATAAT+TGG | 0.375579 | 1.3:+16311818 | None:intergenic |
| GTCAGTTTGATCCTTGTTAG+AGG | 0.378622 | 1.3:+16314976 | None:intergenic |
| CATCTCTTGACTGGAGTGAT+TGG | 0.380843 | 1.3:-16316010 | MS.gene63003:CDS |
| TTTGATTCAATAGAAAGTTA+AGG | 0.382479 | 1.3:+16310568 | None:intergenic |
| AACCTCAAACCCTTGTTCTT+GGG | 0.386304 | 1.3:+16314131 | None:intergenic |
| TAACTTAGATGTTCAGTGTA+TGG | 0.388265 | 1.3:-16310847 | MS.gene63003:CDS |
| GCAATACATCCACGATCTTC+AGG | 0.389679 | 1.3:+16311875 | None:intergenic |
| ATATCTTCAAATACATGAAT+AGG | 0.393586 | 1.3:+16316574 | None:intergenic |
| TGAGCTACTGCATTCTGGTT+TGG | 0.393661 | 1.3:-16310523 | MS.gene63003:CDS |
| TATACCTCTTATCGTTTCTT+CGG | 0.403039 | 1.3:+16309549 | None:intergenic |
| TGCGTGACTGGTTACATCAT+TGG | 0.404069 | 1.3:-16315030 | MS.gene63003:CDS |
| TCTTTAGCTTCTTTAACATT+AGG | 0.404506 | 1.3:+16312052 | None:intergenic |
| GCCGTTGTTGATGATCTTGC+AGG | 0.405319 | 1.3:+16309386 | None:intergenic |
| TAGCATCTTCCGGCTTTAAA+GGG | 0.405552 | 1.3:+16315748 | None:intergenic |
| GTTGCTTCGTCACTTGTTAA+CGG | 0.406105 | 1.3:-16311642 | MS.gene63003:intron |
| TTGATTCAATAGAAAGTTAA+GGG | 0.406538 | 1.3:+16310569 | None:intergenic |
| TCAGCTACTGGTTTCTGATT+CGG | 0.407682 | 1.3:+16317344 | None:intergenic |
| ATAAGGCTGAGAGCAGCTTA+TGG | 0.408031 | 1.3:-16315240 | MS.gene63003:CDS |
| TGGTGGACACCTTGCTTGTC+CGG | 0.410037 | 1.3:-16310337 | MS.gene63003:CDS |
| TTCGGTGAATTGACATCGGT+TGG | 0.410937 | 1.3:+16317362 | None:intergenic |
| AGACAAGGCATTCTGAGAAA+TGG | 0.412315 | 1.3:+16315860 | None:intergenic |
| CTTTCAAACTCACCACGGTC+TGG | 0.412982 | 1.3:+16310783 | None:intergenic |
| AGGGCATGTTTCTTTCTCAT+TGG | 0.415987 | 1.3:+16315767 | None:intergenic |
| TGCTCTATATCTCAGTTTAG+TGG | 0.416926 | 1.3:-16312131 | MS.gene63003:intron |
| AAATCTGGTGCTATTTCTCT+TGG | 0.417438 | 1.3:+16310198 | None:intergenic |
| TCTTTAACATTAGGCGAAGC+TGG | 0.426037 | 1.3:+16312061 | None:intergenic |
| CTGCCAAAGTTGTGAAGATA+AGG | 0.431284 | 1.3:-16315257 | MS.gene63003:CDS |
| AAGAATCAGTGTTGCCTTCA+AGG | 0.431318 | 1.3:+16310592 | None:intergenic |
| TTTGAAGCATAGTCACAATC+AGG | 0.433575 | 1.3:+16314923 | None:intergenic |
| ATCTGGATCTTGAGGCACTT+TGG | 0.434126 | 1.3:+16310254 | None:intergenic |
| AGAAAGTTATCAAAATTTAA+GGG | 0.434763 | 1.3:+16315909 | None:intergenic |
| ATATGCAAACTCACTGTTGC+TGG | 0.434866 | 1.3:+16311805 | None:intergenic |
| GTTAATGGAGTTAAGGGAAC+TGG | 0.451103 | 1.3:-16317009 | MS.gene63003:CDS |
| CAGCCTTATCTTCACAACTT+TGG | 0.452105 | 1.3:+16315254 | None:intergenic |
| CGGGTCGGTTAATGGAGTTA+AGG | 0.454889 | 1.3:-16317016 | MS.gene63003:CDS |
| TTTCAGCGTTTGTCAGCGCT+TGG | 0.454940 | 1.3:-16310277 | MS.gene63003:CDS |
| TACAAGAGACAGTCCCTTGA+AGG | 0.455029 | 1.3:-16310606 | MS.gene63003:CDS |
| CTCTTTACTATAGCTACTCA+TGG | 0.455923 | 1.3:+16309589 | None:intergenic |
| GCAGAAGTGGGATCGAAATT+GGG | 0.456250 | 1.3:-16309707 | MS.gene63003:CDS |
| CAATGGAAAACCACTCAAGC+TGG | 0.456812 | 1.3:-16310914 | MS.gene63003:CDS |
| ATAAATTTCTCAAGTAAAAG+AGG | 0.461699 | 1.3:+16311501 | None:intergenic |
| TTTCTCAAGTAAAAGAGGTT+CGG | 0.467269 | 1.3:+16311506 | None:intergenic |
| GAAAATTCGAGGATGTTTGC+GGG | 0.467912 | 1.3:-16316715 | MS.gene63003:CDS |
| GACATCGGTTGGGTTGTTCA+TGG | 0.468678 | 1.3:+16317373 | None:intergenic |
| AACTTAGATGTTCAGTGTAT+GGG | 0.468798 | 1.3:-16310846 | MS.gene63003:CDS |
| GAAAATTGATTTGCGGTTGG+AGG | 0.469124 | 1.3:-16316968 | MS.gene63003:CDS |
| GGGTCGGTTAATGGAGTTAA+GGG | 0.472590 | 1.3:-16317015 | MS.gene63003:CDS |
| TTGGATCACAATGTGTCAAA+AGG | 0.473045 | 1.3:-16312367 | MS.gene63003:intron |
| AGTGCCTCAAGATCCAGATT+TGG | 0.473131 | 1.3:-16310250 | MS.gene63003:CDS |
| TGACCAGCCTCAAGATCAAA+AGG | 0.474195 | 1.3:+16311023 | None:intergenic |
| CATTAGGCGAAGCTGGAGCT+TGG | 0.479606 | 1.3:+16312068 | None:intergenic |
| GGAAAATTCGAGGATGTTTG+CGG | 0.482351 | 1.3:-16316716 | MS.gene63003:CDS |
| TCTTCATCAGACAGGGAAGT+TGG | 0.482991 | 1.3:+16309809 | None:intergenic |
| ATGTCAACTGTTGCTGTACA+TGG | 0.483504 | 1.3:-16309755 | MS.gene63003:CDS |
| ATAATTCTACATACCCCAAC+TGG | 0.483632 | 1.3:+16314851 | None:intergenic |
| TCCCACTTCTGCTATATGCT+TGG | 0.484587 | 1.3:+16309718 | None:intergenic |
| CTGGTTCGCCTGACGTGGCT+CGG | 0.491132 | 1.3:-16316990 | MS.gene63003:CDS |
| ACATCACTACAAATTTACTT+TGG | 0.491579 | 1.3:+16310691 | None:intergenic |
| CAGTTTGTCTGCTGCTAAGA+GGG | 0.493510 | 1.3:-16316620 | MS.gene63003:CDS |
| TGTTTCGGCAATGTGTTGTA+TGG | 0.497684 | 1.3:+16311850 | None:intergenic |
| ATAAATCACTTGATATGTCC+TGG | 0.499529 | 1.3:-16310434 | MS.gene63003:CDS |
| GGTAACATCCTCTTGGCAAA+AGG | 0.500082 | 1.3:-16310715 | MS.gene63003:CDS |
| CACAACAATGATATATCGTC+AGG | 0.500190 | 1.3:+16309110 | None:intergenic |
| TTATAATCACCATCACCATC+TGG | 0.502378 | 1.3:+16314950 | None:intergenic |
| TGCCCAAGAACAAGGGTTTG+AGG | 0.503673 | 1.3:-16314133 | MS.gene63003:CDS |
| TTCCATTGTAGCTATTGACT+TGG | 0.505558 | 1.3:+16310929 | None:intergenic |
| AGACATAACTTCAGAGATGT+TGG | 0.505661 | 1.3:-16309669 | MS.gene63003:CDS |
| AAGTGACGAAGCAACTCATC+TGG | 0.510259 | 1.3:+16311650 | None:intergenic |
| TAACTCTGAGGGGAAACTCC+AGG | 0.512348 | 1.3:+16310977 | None:intergenic |
| GCAGTTTGTCTGCTGCTAAG+AGG | 0.512515 | 1.3:-16316621 | MS.gene63003:CDS |
| AATTAAAAGAACATTCTTCA+GGG | 0.512671 | 1.3:+16314880 | None:intergenic |
| TGACAAACGCTGAAAGAGAA+TGG | 0.515735 | 1.3:+16310285 | None:intergenic |
| TAAACGTCTCTTCATCAGAC+AGG | 0.516468 | 1.3:+16309801 | None:intergenic |
| CACATTGCCGAAACAGCAAA+AGG | 0.518228 | 1.3:-16311842 | MS.gene63003:CDS |
| GAAAACCACTCAAGCTGGGA+AGG | 0.518997 | 1.3:-16310909 | MS.gene63003:CDS |
| GAATATCTCTGTCACAAGAC+TGG | 0.519467 | 1.3:+16311478 | None:intergenic |
| ATGATACTTCATCTCTTGAC+TGG | 0.519939 | 1.3:-16316019 | MS.gene63003:CDS |
| GTCCACTGATGCTATGGATA+AGG | 0.520330 | 1.3:-16310670 | MS.gene63003:CDS |
| GAGTGACTGCACTCATCCAT+CGG | 0.521670 | 1.3:+16310138 | None:intergenic |
| TCAAAAGATGTTAGCGAGGA+GGG | 0.523175 | 1.3:-16314905 | MS.gene63003:CDS |
| GACCCTCGGTAACATCCTCT+TGG | 0.525045 | 1.3:-16310722 | MS.gene63003:CDS |
| ATGATAACCCTATCCGATGA+TGG | 0.525665 | 1.3:-16312007 | MS.gene63003:CDS |
| TCATCAGACAGGGAAGTTGG+AGG | 0.526181 | 1.3:+16309812 | None:intergenic |
| TCGGTGAATTGACATCGGTT+GGG | 0.526361 | 1.3:+16317363 | None:intergenic |
| AGATGTAAGTGTATTATCAA+TGG | 0.529296 | 1.3:+16311946 | None:intergenic |
| ACTGTATCGATCTCCATAGA+TGG | 0.531998 | 1.3:+16310078 | None:intergenic |
| CCCCTTCAAAATCCACTCCT+CGG | 0.532038 | 1.3:-16317268 | MS.gene63003:CDS |
| CATGAGCTCCATCATCGGAT+AGG | 0.532379 | 1.3:+16311999 | None:intergenic |
| AACTTCTGAGACGTTCCACC+AGG | 0.532892 | 1.3:+16311974 | None:intergenic |
| CTGATGAAGAGACGTTTAGT+TGG | 0.532923 | 1.3:-16309796 | MS.gene63003:CDS |
| CGCCAAGTCAATAGCTACAA+TGG | 0.533424 | 1.3:-16310931 | MS.gene63003:CDS |
| CAGAAAGGATTCCTCTAACA+AGG | 0.536790 | 1.3:-16314987 | MS.gene63003:CDS |
| CAGGACTTGGAGGTGGATGA+AGG | 0.537608 | 1.3:-16315566 | MS.gene63003:CDS |
| AATTGGATTAGGAAAATTCG+AGG | 0.537859 | 1.3:-16316726 | MS.gene63003:intron |
| ATGAGCTCCATCATCGGATA+GGG | 0.538228 | 1.3:+16312000 | None:intergenic |
| TTATTACCAGGACTTGGAGG+TGG | 0.541586 | 1.3:-16315573 | MS.gene63003:intron |
| TTCTGGTTTGGAAGATTCAG+AGG | 0.541655 | 1.3:-16310511 | MS.gene63003:CDS |
| TGCCAAGCATATAGCAGAAG+TGG | 0.544206 | 1.3:-16309720 | MS.gene63003:CDS |
| TGGCTCGGAAAATTGATTTG+CGG | 0.545116 | 1.3:-16316975 | MS.gene63003:CDS |
| AGCACCTGTCTGTTCTGAGC+TGG | 0.547082 | 1.3:+16310011 | None:intergenic |
| AAATTATTACCAGGACTTGG+AGG | 0.547686 | 1.3:-16315576 | MS.gene63003:intron |
| ATGATAATTATTTAGGTATG+CGG | 0.547846 | 1.3:-16315076 | MS.gene63003:intron |
| TAGCTCACCAAAAGACGTAC+TGG | 0.549623 | 1.3:+16310539 | None:intergenic |
| ATATAGTTGTTCTGGACCCT+CGG | 0.550650 | 1.3:-16310736 | MS.gene63003:CDS |
| GAAGTTGTTAAGCTTGCTAG+TGG | 0.551315 | 1.3:-16309985 | MS.gene63003:CDS |
| CTGAGAAATGGATGTGCTTG+AGG | 0.551351 | 1.3:+16315872 | None:intergenic |
| TATGCTTGTGCCCAAGAACA+AGG | 0.551433 | 1.3:-16314141 | MS.gene63003:CDS |
| GATGATGGAGCTCATGGTCC+TGG | 0.552540 | 1.3:-16311992 | MS.gene63003:CDS |
| CTGATTCGGTGAATTGACAT+CGG | 0.554757 | 1.3:+16317358 | None:intergenic |
| GCGCCAAATTTCAATTTCAG+AGG | 0.555629 | 1.3:-16309324 | MS.gene63003:CDS |
| AAGCTGGGAAGGGTTAGTTA+AGG | 0.555894 | 1.3:-16310898 | MS.gene63003:CDS |
| AGAAACATGCCCTTTAAAGC+CGG | 0.559741 | 1.3:-16315757 | MS.gene63003:CDS |
| ATTAGTTTGGATAACTCTGA+GGG | 0.559852 | 1.3:+16310966 | None:intergenic |
| TCGGAAAATTGATTTGCGGT+TGG | 0.559901 | 1.3:-16316971 | MS.gene63003:CDS |
| GGGAACTGGTTCGCCTGACG+TGG | 0.564149 | 1.3:-16316995 | MS.gene63003:CDS |
| CCAGTCACGCAAGAAATTCA+GGG | 0.564944 | 1.3:+16315042 | None:intergenic |
| AGAATCAGTGTTGCCTTCAA+GGG | 0.565025 | 1.3:+16310593 | None:intergenic |
| AGTGATGTCCACTGATGCTA+TGG | 0.566893 | 1.3:-16310676 | MS.gene63003:CDS |
| ATCCTTATCCATAGCATCAG+TGG | 0.568152 | 1.3:+16310668 | None:intergenic |
| AGTGACTGCACTCATCCATC+GGG | 0.568345 | 1.3:+16310139 | None:intergenic |
| GCCTCAAGATCCAGATTTGG+TGG | 0.568603 | 1.3:-16310247 | MS.gene63003:CDS |
| AAAGCCGGAAGATGCTAAAG+TGG | 0.573555 | 1.3:-16315742 | MS.gene63003:intron |
| CTATCCGATGATGGAGCTCA+TGG | 0.576560 | 1.3:-16311998 | MS.gene63003:CDS |
| AATGGAAAACCACTCAAGCT+GGG | 0.579058 | 1.3:-16310913 | MS.gene63003:CDS |
| AATTGAATGTTGTACCTACT+CGG | 0.580618 | 1.3:+16315491 | None:intergenic |
| CCAGAACTGAAGATGCAGAA+TGG | 0.580669 | 1.3:+16311449 | None:intergenic |
| CTAACCCTTCCCAGCTTGAG+TGG | 0.581738 | 1.3:+16310904 | None:intergenic |
| TTTAATTACAGGACCAGTTG+GGG | 0.582149 | 1.3:-16314864 | MS.gene63003:intron |
| TTCGGCGTTGACTTCTTCTG+TGG | 0.585218 | 1.3:+16311524 | None:intergenic |
| TGTTAAAGAAGCTAAAGAGA+TGG | 0.585445 | 1.3:-16312047 | MS.gene63003:CDS |
| AACTCTGAGGGGAAACTCCA+GGG | 0.593785 | 1.3:+16310978 | None:intergenic |
| GAGGATTTCCGCATTTCACA+AGG | 0.594146 | 1.3:-16309305 | MS.gene63003:CDS |
| ACGACCGAAGAAACGATAAG+AGG | 0.596585 | 1.3:-16309553 | MS.gene63003:intron |
| ACTTAGATGTTCAGTGTATG+GGG | 0.597797 | 1.3:-16310845 | MS.gene63003:CDS |
| AAATCTTGATTCTGGAAACC+AGG | 0.600916 | 1.3:+16310416 | None:intergenic |
| TGCCAAGAGGATGTTACCGA+GGG | 0.601703 | 1.3:+16310720 | None:intergenic |
| CGAAGCAACTCATCTGGCAA+TGG | 0.602772 | 1.3:+16311656 | None:intergenic |
| AGAGCTTTGCATCAATGAGA+AGG | 0.605568 | 1.3:-16310874 | MS.gene63003:CDS |
| AAGACGTTATCAAAACAGAA+AGG | 0.607322 | 1.3:-16315002 | MS.gene63003:CDS |
| ACCACCAAATCTGGATCTTG+AGG | 0.607687 | 1.3:+16310246 | None:intergenic |
| GCTGAACATTATTTGAGCAG+AGG | 0.607924 | 1.3:-16309149 | MS.gene63003:CDS |
| TCTACAGTTGTGTCTTCTGG+TGG | 0.608964 | 1.3:-16310354 | MS.gene63003:CDS |
| TGATGATCTTGCAGGAACAA+TGG | 0.609492 | 1.3:+16309394 | None:intergenic |
| TTACTCAGAGAAACATCTAC+CGG | 0.609977 | 1.3:+16310318 | None:intergenic |
| AGGACCATGAGCTCCATCAT+CGG | 0.610961 | 1.3:+16311994 | None:intergenic |
| AATTAGTTTGGATAACTCTG+AGG | 0.615241 | 1.3:+16310965 | None:intergenic |
| CGCAACTGTGTATAACCCGA+TGG | 0.615930 | 1.3:-16310154 | MS.gene63003:CDS |
| TCGATACAGTGCAAAATGTG+TGG | 0.616276 | 1.3:-16310065 | MS.gene63003:CDS |
| ATCTTGCAGGAACAATGGAT+CGG | 0.620287 | 1.3:+16309399 | None:intergenic |
| AAAACCACTCAAGCTGGGAA+GGG | 0.622887 | 1.3:-16310908 | MS.gene63003:CDS |
| TCTGCTGCTAAGAGGGAGAG+TGG | 0.625391 | 1.3:-16316613 | MS.gene63003:CDS |
| GCCAAGCATATAGCAGAAGT+GGG | 0.625606 | 1.3:-16309719 | MS.gene63003:CDS |
| TTCTGGACTACAATCTACAA+TGG | 0.627792 | 1.3:+16315968 | None:intergenic |
| CGTTGATTAAATTACCCTGG+AGG | 0.629714 | 1.3:+16317238 | None:intergenic |
| TACTACAAAAGATGATACCC+TGG | 0.629872 | 1.3:-16310995 | MS.gene63003:CDS |
| CATGCCAGCTCAGAACAGAC+AGG | 0.630314 | 1.3:-16310015 | MS.gene63003:CDS |
| TGGTTTGGAAGATTCAGAGG+TGG | 0.632543 | 1.3:-16310508 | MS.gene63003:CDS |
| CAAACCAACAAAAGCCTCAG+AGG | 0.633080 | 1.3:-16315206 | MS.gene63003:intron |
| TTCACAGTATGCTGCTAACG+TGG | 0.634312 | 1.3:-16309060 | MS.gene63003:CDS |
| TTCAAAAGATGTTAGCGAGG+AGG | 0.638177 | 1.3:-16314906 | MS.gene63003:CDS |
| GGAGGCGAAATTGTCAGCTG+AGG | 0.639126 | 1.3:-16316950 | MS.gene63003:intron |
| ACAACAAGGATCATGCACTC+CGG | 0.639565 | 1.3:-16317315 | MS.gene63003:CDS |
| AAACATCTACCGGACAAGCA+AGG | 0.647550 | 1.3:+16310328 | None:intergenic |
| ATGCTTGTGCCCAAGAACAA+GGG | 0.649836 | 1.3:-16314140 | MS.gene63003:CDS |
| CAGATGCTGAGCCACCGAGT+AGG | 0.651091 | 1.3:-16315505 | MS.gene63003:CDS |
| GATATATCATTGTTGTGTGA+AGG | 0.651596 | 1.3:-16309104 | MS.gene63003:CDS |
| TTGCCAAGAGGATGTTACCG+AGG | 0.651979 | 1.3:+16310719 | None:intergenic |
| ATGAAGGCAGTACTGTATCA+GGG | 0.653597 | 1.3:-16315550 | MS.gene63003:CDS |
| AAGTTGTTAAGCTTGCTAGT+GGG | 0.656691 | 1.3:-16309984 | MS.gene63003:CDS |
| GATGGAGCTCATGGTCCTGG+TGG | 0.657711 | 1.3:-16311989 | MS.gene63003:CDS |
| TGCTTCAAAAGATGTTAGCG+AGG | 0.658230 | 1.3:-16314909 | MS.gene63003:CDS |
| ACCTTACACAAAGAAAAGAA+CGG | 0.658899 | 1.3:+16316679 | None:intergenic |
| TTGTCAACAGCTCAATACAT+CGG | 0.659863 | 1.3:-16312435 | MS.gene63003:intron |
| TGGACTACAATCTACAATGG+TGG | 0.661598 | 1.3:+16315971 | None:intergenic |
| GATCAAACTGACATACCAGA+TGG | 0.670055 | 1.3:-16314965 | MS.gene63003:CDS |
| ATACAGTGCAAAATGTGTGG+AGG | 0.671272 | 1.3:-16310062 | MS.gene63003:CDS |
| CTAGAAATGTCAGACCTCTG+AGG | 0.672592 | 1.3:+16315192 | None:intergenic |
| AAACGTCTCTTCATCAGACA+GGG | 0.675440 | 1.3:+16309802 | None:intergenic |
| ATTGACTTTCAAACTCACCA+CGG | 0.678678 | 1.3:+16310778 | None:intergenic |
| TCCTGCAAGATCATCAACAA+CGG | 0.691180 | 1.3:-16309387 | MS.gene63003:CDS |
| TTTATCATCTGAATAAGACA+AGG | 0.711090 | 1.3:+16315845 | None:intergenic |
| GAGAGTGGAAGAACTAACTG+TGG | 0.712518 | 1.3:-16316598 | MS.gene63003:CDS |
| TTAGTTTGGATAACTCTGAG+GGG | 0.713297 | 1.3:+16310967 | None:intergenic |
| ATTAGATCTATTCCAGACCG+TGG | 0.713490 | 1.3:-16310795 | MS.gene63003:CDS |
| ATCATGTGTTCTGACTGTGT+AGG | 0.728555 | 1.3:+16315819 | None:intergenic |
| ACTGACATACCAGATGGTGA+TGG | 0.730638 | 1.3:-16314959 | MS.gene63003:CDS |
| GTAGCTGAACAACAACAACA+AGG | 0.737627 | 1.3:-16317329 | MS.gene63003:CDS |
| TGAATGTTGTACCTACTCGG+TGG | 0.740553 | 1.3:+16315494 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 16309043 | 16317393 | 16309043 | ID=MS.gene63003 |
| chr1.3 | mRNA | 16309043 | 16317393 | 16309043 | ID=MS.gene63003.t1;Parent=MS.gene63003 |
| chr1.3 | exon | 16317253 | 16317393 | 16317253 | ID=MS.gene63003.t1.exon1;Parent=MS.gene63003.t1 |
| chr1.3 | CDS | 16317253 | 16317393 | 16317253 | ID=cds.MS.gene63003.t1;Parent=MS.gene63003.t1 |
| chr1.3 | exon | 16316951 | 16317058 | 16316951 | ID=MS.gene63003.t1.exon2;Parent=MS.gene63003.t1 |
| chr1.3 | CDS | 16316951 | 16317058 | 16316951 | ID=cds.MS.gene63003.t1;Parent=MS.gene63003.t1 |
| chr1.3 | exon | 16316570 | 16316737 | 16316570 | ID=MS.gene63003.t1.exon3;Parent=MS.gene63003.t1 |
| chr1.3 | CDS | 16316570 | 16316737 | 16316570 | ID=cds.MS.gene63003.t1;Parent=MS.gene63003.t1 |
| chr1.3 | exon | 16315743 | 16316042 | 16315743 | ID=MS.gene63003.t1.exon4;Parent=MS.gene63003.t1 |
| chr1.3 | CDS | 16315743 | 16316042 | 16315743 | ID=cds.MS.gene63003.t1;Parent=MS.gene63003.t1 |
| chr1.3 | exon | 16315491 | 16315585 | 16315491 | ID=MS.gene63003.t1.exon5;Parent=MS.gene63003.t1 |
| chr1.3 | CDS | 16315491 | 16315585 | 16315491 | ID=cds.MS.gene63003.t1;Parent=MS.gene63003.t1 |
| chr1.3 | exon | 16315207 | 16315291 | 16315207 | ID=MS.gene63003.t1.exon6;Parent=MS.gene63003.t1 |
| chr1.3 | CDS | 16315207 | 16315291 | 16315207 | ID=cds.MS.gene63003.t1;Parent=MS.gene63003.t1 |
| chr1.3 | exon | 16314865 | 16315083 | 16314865 | ID=MS.gene63003.t1.exon7;Parent=MS.gene63003.t1 |
| chr1.3 | CDS | 16314865 | 16315083 | 16314865 | ID=cds.MS.gene63003.t1;Parent=MS.gene63003.t1 |
| chr1.3 | exon | 16314125 | 16314184 | 16314125 | ID=MS.gene63003.t1.exon8;Parent=MS.gene63003.t1 |
| chr1.3 | CDS | 16314125 | 16314184 | 16314125 | ID=cds.MS.gene63003.t1;Parent=MS.gene63003.t1 |
| chr1.3 | exon | 16312368 | 16312447 | 16312368 | ID=MS.gene63003.t1.exon9;Parent=MS.gene63003.t1 |
| chr1.3 | CDS | 16312368 | 16312447 | 16312368 | ID=cds.MS.gene63003.t1;Parent=MS.gene63003.t1 |
| chr1.3 | exon | 16311819 | 16312138 | 16311819 | ID=MS.gene63003.t1.exon10;Parent=MS.gene63003.t1 |
| chr1.3 | CDS | 16311819 | 16312138 | 16311819 | ID=cds.MS.gene63003.t1;Parent=MS.gene63003.t1 |
| chr1.3 | exon | 16311643 | 16311734 | 16311643 | ID=MS.gene63003.t1.exon11;Parent=MS.gene63003.t1 |
| chr1.3 | CDS | 16311643 | 16311734 | 16311643 | ID=cds.MS.gene63003.t1;Parent=MS.gene63003.t1 |
| chr1.3 | exon | 16311424 | 16311553 | 16311424 | ID=MS.gene63003.t1.exon12;Parent=MS.gene63003.t1 |
| chr1.3 | CDS | 16311424 | 16311553 | 16311424 | ID=cds.MS.gene63003.t1;Parent=MS.gene63003.t1 |
| chr1.3 | exon | 16309924 | 16311077 | 16309924 | ID=MS.gene63003.t1.exon13;Parent=MS.gene63003.t1 |
| chr1.3 | CDS | 16309924 | 16311077 | 16309924 | ID=cds.MS.gene63003.t1;Parent=MS.gene63003.t1 |
| chr1.3 | exon | 16309554 | 16309846 | 16309554 | ID=MS.gene63003.t1.exon14;Parent=MS.gene63003.t1 |
| chr1.3 | CDS | 16309554 | 16309846 | 16309554 | ID=cds.MS.gene63003.t1;Parent=MS.gene63003.t1 |
| chr1.3 | exon | 16309281 | 16309463 | 16309281 | ID=MS.gene63003.t1.exon15;Parent=MS.gene63003.t1 |
| chr1.3 | CDS | 16309281 | 16309463 | 16309281 | ID=cds.MS.gene63003.t1;Parent=MS.gene63003.t1 |
| chr1.3 | exon | 16309043 | 16309178 | 16309043 | ID=MS.gene63003.t1.exon16;Parent=MS.gene63003.t1 |
| chr1.3 | CDS | 16309043 | 16309178 | 16309043 | ID=cds.MS.gene63003.t1;Parent=MS.gene63003.t1 |
| Gene Sequence |
| Protein sequence |
