AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene64856


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64856.t1 MTR_5g023740 98.638 367 5 0 1 367 1 367 0.0 743
MS.gene64856.t1 MTR_5g023740 97.548 367 5 1 1 367 1 363 0.0 729
MS.gene64856.t1 MTR_8g074030 88.441 372 37 2 1 367 1 371 0.0 673
MS.gene64856.t1 MTR_8g074030 87.366 372 37 3 1 367 1 367 0.0 660
MS.gene64856.t1 MTR_5g023740 98.195 277 5 0 1 277 1 277 0.0 563
MS.gene64856.t1 MTR_5g023740 98.195 277 5 0 1 277 1 277 0.0 562
MS.gene64856.t1 MTR_5g023740 96.751 277 5 1 1 277 1 273 0.0 551
MS.gene64856.t1 MTR_1g064070 48.634 366 174 5 6 366 2 358 1.03e-118 348
MS.gene64856.t1 MTR_3g101470 48.732 355 169 3 17 366 7 353 1.35e-116 342
MS.gene64856.t1 MTR_2g104610 29.132 357 197 15 32 349 35 374 7.26e-28 113
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64856.t1 AT4G35260 84.973 366 54 1 3 367 2 367 0.0 637
MS.gene64856.t1 AT4G35650 81.421 366 66 1 4 367 3 368 0.0 627
MS.gene64856.t1 AT2G17130 81.967 366 65 1 3 367 2 367 0.0 617
MS.gene64856.t1 AT2G17130 80.874 366 65 2 3 367 2 363 0.0 605
MS.gene64856.t1 AT5G03290 51.190 336 156 2 36 366 42 374 1.75e-117 345
MS.gene64856.t1 AT3G09810 51.190 336 156 4 36 366 42 374 8.08e-113 333
MS.gene64856.t1 AT1G32480 62.500 224 69 5 37 257 2 213 1.16e-90 271
MS.gene64856.t1 AT1G80560 29.630 351 197 13 40 354 45 381 1.48e-30 120
MS.gene64856.t1 AT5G14200 28.792 389 224 16 1 349 5 380 1.59e-30 120
MS.gene64856.t1 AT5G14200 28.792 389 224 16 1 349 5 380 1.63e-30 120
MS.gene64856.t1 AT1G31180 28.974 390 223 16 1 349 1 377 2.74e-30 120
MS.gene64856.t1 AT1G31180 28.974 390 223 16 1 349 16 392 4.45e-30 119
MS.gene64856.t1 AT5G14200 26.596 282 165 10 1 246 5 280 3.38e-13 70.1

Find 107 sgRNAs with CRISPR-Local

Find 366 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGATTCCGTCGCCGGGGATT+AGG 0.169058 5.3:+13650588 None:intergenic
ATGTTGATATTGTTGTTATT+AGG 0.236899 5.3:-13650292 MS.gene64856:CDS
GGGGATTAGGGTTACATTGC+GGG 0.275523 5.3:+13650601 None:intergenic
TGTTGATATTGTTGTTATTA+GGG 0.290952 5.3:-13650291 MS.gene64856:CDS
GCTTGCAGATGGTTTATTCT+TGG 0.304514 5.3:-13648220 MS.gene64856:CDS
GATTCCGTCGCCGGGGATTA+GGG 0.344303 5.3:+13650589 None:intergenic
GTGGGTGAGGTGGTGGCGCG+TGG 0.349708 5.3:+13650667 None:intergenic
AACAAGATTTCCATAAAGAT+TGG 0.353298 5.3:+13646723 None:intergenic
CTTGAACATGAGGTTGTTCC+CGG 0.354977 5.3:-13650242 MS.gene64856:CDS
GCTTGTCAGTTGCTTTAATC+TGG 0.358844 5.3:-13650339 MS.gene64856:CDS
AATACAGCGGCAGGCATTGC+TGG 0.369556 5.3:-13646697 MS.gene64856:CDS
ATTTCATTATACTTGATTCC+AGG 0.392374 5.3:+13648168 None:intergenic
ATCTGGAAGGATTGACTACT+AGG 0.394728 5.3:-13650322 MS.gene64856:CDS
ACAAGATTTCCATAAAGATT+GGG 0.395363 5.3:+13646724 None:intergenic
GGAATCGATTAAGAAGAATA+AGG 0.408209 5.3:-13650453 MS.gene64856:CDS
GGGGTTCCGTCTCCGGGGCG+GGG 0.409508 5.3:+13650623 None:intergenic
GGCATGTAGGTTACGGTACG+GGG 0.414877 5.3:+13650644 None:intergenic
TCCAATCGTTCAGCAAATAC+AGG 0.416645 5.3:+13645678 None:intergenic
GGGATTAGGGTTACATTGCG+GGG 0.421936 5.3:+13650602 None:intergenic
ATGTCTTTGCAGGTAATGTT+GGG 0.422079 5.3:-13645833 MS.gene64856:intron
GGAATCGGCCCTCTCGTAAC+CGG 0.429953 5.3:-13650572 MS.gene64856:CDS
GGGCATGTAGGTTACGGTAC+GGG 0.430343 5.3:+13650643 None:intergenic
CTTGATTCCAGGATACTTTG+TGG 0.435276 5.3:+13648179 None:intergenic
TCCTGTATTTGCTGAACGAT+TGG 0.436123 5.3:-13645679 MS.gene64856:CDS
GCAGGCATTGCTGGAGGCAC+TGG 0.441704 5.3:-13646688 MS.gene64856:CDS
CTAATCCCCGGCGACGGAAT+CGG 0.445934 5.3:-13650587 MS.gene64856:CDS
CGGGGATTAGGGTTACATTG+CGG 0.449437 5.3:+13650600 None:intergenic
AAGAATAAGGTCTGTTTGAA+AGG 0.455164 5.3:-13650440 MS.gene64856:CDS
GTCTCCGGGGCGGGGCATGT+AGG 0.455315 5.3:+13650631 None:intergenic
TCGAATTTCTCGAAGTGCAC+TGG 0.458066 5.3:+13650515 None:intergenic
GGAGGCACTGGTGTCATGCC+GGG 0.461037 5.3:-13646676 MS.gene64856:CDS
TACTGCATCAACAACCTCTT+GGG 0.461914 5.3:+13645587 None:intergenic
GGGTGGTGCTTGTCCCTCCA+AGG 0.470554 5.3:+13645607 None:intergenic
ATCGATTCCATCACTTCAGA+TGG 0.475497 5.3:+13650467 None:intergenic
TTACTGCATCAACAACCTCT+TGG 0.475996 5.3:+13645586 None:intergenic
AGAGGGCCGATTCCGTCGCC+GGG 0.478788 5.3:+13650581 None:intergenic
GCCTGAGCAATTTGATGTCA+TGG 0.486144 5.3:-13648109 MS.gene64856:intron
CTTGTTGCAAATACAGCGGC+AGG 0.486316 5.3:-13646706 MS.gene64856:CDS
AAGGAGAAGTGCCACAGGAT+TGG 0.491158 5.3:+13645734 None:intergenic
AAGGTGTTTGAGGAGGTTTG+TGG 0.493042 5.3:+13650694 None:intergenic
GAGAGGGCCGATTCCGTCGC+CGG 0.493954 5.3:+13650580 None:intergenic
GGATTAGGGTTACATTGCGG+GGG 0.495232 5.3:+13650603 None:intergenic
GTCAGTTGCTTTAATCTGGA+AGG 0.496580 5.3:-13650335 MS.gene64856:CDS
CGGCGCTGTTGAACAAGTAA+TGG 0.501927 5.3:-13650552 MS.gene64856:CDS
TGGAGGCACTGGTGTCATGC+CGG 0.510683 5.3:-13646677 MS.gene64856:CDS
TTGGCGACTCCGATGGGTGG+TGG 0.513125 5.3:-13650413 MS.gene64856:CDS
GAGGTTGCCACAAAGTATCC+TGG 0.516332 5.3:-13648186 MS.gene64856:CDS
AATAAGGTCTGTTTGAAAGG+TGG 0.522695 5.3:-13650437 MS.gene64856:CDS
GCGTGGAGATAAGGTGTTTG+AGG 0.525687 5.3:+13650684 None:intergenic
AATGTCTTTGCAGGTAATGT+TGG 0.527179 5.3:-13645834 MS.gene64856:intron
CAAGATTTCCATAAAGATTG+GGG 0.528612 5.3:+13646725 None:intergenic
GCTTAATTTGCAGCTGAGGA+AGG 0.528655 5.3:-13650381 MS.gene64856:CDS
TGAGCATCATTGCGGAAGAA+AGG 0.530564 5.3:+13645715 None:intergenic
GGGGCGGGGCATGTAGGTTA+CGG 0.533314 5.3:+13650637 None:intergenic
TACATGCCCCGCCCCGGAGA+CGG 0.536211 5.3:-13650629 MS.gene64856:CDS
TTTGAACAAGGTGCTTCCGC+AGG 0.536373 5.3:-13645795 MS.gene64856:CDS
GTTATTAGGGAGAATACTGA+AGG 0.537381 5.3:-13650278 MS.gene64856:CDS
GGTGGTGGCGCGTGGAGATA+AGG 0.541475 5.3:+13650675 None:intergenic
CATTACTTGTTCAACAGCGC+CGG 0.543378 5.3:+13650553 None:intergenic
GGTGGATTGGCGACTCCGAT+GGG 0.544930 5.3:-13650419 MS.gene64856:CDS
TTGAGACTCTCAACGACACC+GGG 0.546059 5.3:+13650224 None:intergenic
GGTCTGTTTGAAAGGTGGAT+TGG 0.550611 5.3:-13650432 MS.gene64856:CDS
AGCGATTCCATCTGAAGTGA+TGG 0.550636 5.3:-13650474 MS.gene64856:CDS
AGGTGGATTGGCGACTCCGA+TGG 0.556949 5.3:-13650420 MS.gene64856:CDS
AACATTATGAAGCTTGCAGA+TGG 0.557251 5.3:-13648231 MS.gene64856:CDS
ACCATGACATCAAATTGCTC+AGG 0.558319 5.3:+13648108 None:intergenic
GGTGCTTCCGCAGGAAATGT+TGG 0.560130 5.3:-13645786 MS.gene64856:CDS
GATTAGGGTTACATTGCGGG+GGG 0.563580 5.3:+13650604 None:intergenic
CGCAATGTAACCCTAATCCC+CGG 0.573917 5.3:-13650599 MS.gene64856:CDS
TTCCGCAGGAAATGTTGGTA+AGG 0.574592 5.3:-13645781 MS.gene64856:CDS
AATACTGAAGGGGAATATGC+TGG 0.581107 5.3:-13650266 MS.gene64856:CDS
CTTGAGACTCTCAACGACAC+CGG 0.585873 5.3:+13650223 None:intergenic
ATTCTTGGAATCTTGTCGAG+AGG 0.590626 5.3:-13648205 MS.gene64856:CDS
GGATTGGCGACTCCGATGGG+TGG 0.593367 5.3:-13650416 MS.gene64856:CDS
GTAACCCTAATCCCCGGCGA+CGG 0.593645 5.3:-13650593 MS.gene64856:CDS
TACAGGACAAAGGACCTTGG+AGG 0.595343 5.3:-13645621 MS.gene64856:CDS
GTATCTAAATAACAGAAAGA+AGG 0.597022 5.3:-13648274 MS.gene64856:CDS
GTTCGCTTAATTTGCAGCTG+AGG 0.597579 5.3:-13650385 MS.gene64856:CDS
GGGGCATGTAGGTTACGGTA+CGG 0.599567 5.3:+13650642 None:intergenic
TGGAGATAAGGTGTTTGAGG+AGG 0.600685 5.3:+13650687 None:intergenic
GCATGTAGGTTACGGTACGG+GGG 0.601867 5.3:+13650645 None:intergenic
GTAACCTACATGCCCCGCCC+CGG 0.604970 5.3:-13650635 MS.gene64856:CDS
GAAGAAAGGAGAAGTGCCAC+AGG 0.610058 5.3:+13645729 None:intergenic
TGCATCAACAACCTCTTGGG+TGG 0.620983 5.3:+13645590 None:intergenic
TCAACAGCGCCGGTTACGAG+AGG 0.623169 5.3:+13650563 None:intergenic
CAACAGCGCCGGTTACGAGA+GGG 0.629447 5.3:+13650564 None:intergenic
TTCGAGAAATTCGAAGTGCA+CGG 0.630058 5.3:-13650506 MS.gene64856:CDS
CGGTGTCGTTGAGAGTCTCA+AGG 0.630865 5.3:-13650222 MS.gene64856:intron
ACAGGACAAAGGACCTTGGA+GGG 0.632351 5.3:-13645620 MS.gene64856:CDS
GGCACTGGTGTCATGCCGGG+AGG 0.634816 5.3:-13646673 MS.gene64856:intron
TATTAGGGAGAATACTGAAG+GGG 0.638863 5.3:-13650276 MS.gene64856:CDS
ACAGCGGCAGGCATTGCTGG+AGG 0.645225 5.3:-13646694 MS.gene64856:CDS
CACCTTGTTCAAATACAGCA+TGG 0.646572 5.3:+13645805 None:intergenic
AAGTACAGGACAAAGGACCT+TGG 0.646920 5.3:-13645624 MS.gene64856:CDS
TTCCTTACCAACATTTCCTG+CGG 0.649166 5.3:+13645779 None:intergenic
TTATTAGGGAGAATACTGAA+GGG 0.651297 5.3:-13650277 MS.gene64856:CDS
ATATGCTGGTCTTGAACATG+AGG 0.652648 5.3:-13650252 MS.gene64856:CDS
TGTCTTTGCAGGTAATGTTG+GGG 0.652865 5.3:-13645832 MS.gene64856:intron
AGAGGGTAAGTACAGGACAA+AGG 0.652879 5.3:-13645631 MS.gene64856:CDS
GAACTAACACCACCACCCAT+CGG 0.665416 5.3:+13650404 None:intergenic
AAGATTTCCATAAAGATTGG+GGG 0.670781 5.3:+13646726 None:intergenic
GACCATGCTGTATTTGAACA+AGG 0.680946 5.3:-13645807 MS.gene64856:CDS
AAGATGTCTGAGCATCATTG+CGG 0.685294 5.3:+13645707 None:intergenic
GAGGGCCGATTCCGTCGCCG+GGG 0.686332 5.3:+13650582 None:intergenic
AGGGACAAGCACCACCCAAG+AGG 0.691399 5.3:-13645601 MS.gene64856:CDS
AGAAAAGAAAGCCAATCCTG+TGG 0.714161 5.3:-13645745 MS.gene64856:CDS
AAATCTTGTTGCAAATACAG+CGG 0.734643 5.3:-13646710 MS.gene64856:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTAAATAAAAAAATT+TGG - chr5.3:13648279-13648298 MS.gene64856:CDS 0.0%
!! TAATTAAATATGATAAAAGT+TGG + chr5.3:13647413-13647432 None:intergenic 10.0%
!! TTGTAATAATGAATATAAAA+GGG - chr5.3:13649359-13649378 MS.gene64856:intron 10.0%
!! TTTGTAATAATGAATATAAA+AGG - chr5.3:13649358-13649377 MS.gene64856:intron 10.0%
!!! TTTTTTTTTGCTTATAATAT+GGG - chr5.3:13647628-13647647 MS.gene64856:intron 10.0%
!!! TTTTTTTTTTGCTTATAATA+TGG - chr5.3:13647627-13647646 MS.gene64856:intron 10.0%
!! ATATAATACATTCATTCTTA+CGG - chr5.3:13647245-13647264 MS.gene64856:intron 15.0%
!! ATTCTAATGAAAATATAGAT+AGG - chr5.3:13650304-13650323 MS.gene64856:CDS 15.0%
!! CATATAATTAGATTAAACTA+GGG + chr5.3:13649170-13649189 None:intergenic 15.0%
!! TCATATAATTAGATTAAACT+AGG + chr5.3:13649171-13649190 None:intergenic 15.0%
!! TGTAATAATGAATATAAAAG+GGG - chr5.3:13649360-13649379 MS.gene64856:intron 15.0%
!! TTCTAATGAAAATATAGATA+GGG - chr5.3:13650305-13650324 MS.gene64856:CDS 15.0%
!!! CATCATAATTTTTTTAACAT+AGG - chr5.3:13649142-13649161 MS.gene64856:intron 15.0%
!!! GTTTTTTTTGCTTATAATTT+AGG + chr5.3:13647355-13647374 None:intergenic 15.0%
!!! TATATTTCCTTTTATTACTT+TGG - chr5.3:13648365-13648384 MS.gene64856:intron 15.0%
!!! TATTTAATTAGGTTTTGATA+TGG - chr5.3:13649251-13649270 MS.gene64856:intron 15.0%
!!! TTTAATCAATCACTATATTT+TGG + chr5.3:13649875-13649894 None:intergenic 15.0%
!! AAGACTCAAATAATTATCTT+TGG + chr5.3:13648501-13648520 None:intergenic 20.0%
!! AATATTCAAATGTGATAGTT+TGG + chr5.3:13646219-13646238 None:intergenic 20.0%
!! GAATATACTTTGTATTTAAC+AGG - chr5.3:13646940-13646959 MS.gene64856:intron 20.0%
!! GTTTAATCTAATTATATGAG+AGG - chr5.3:13649172-13649191 MS.gene64856:intron 20.0%
!! TAATTCTCCAAAGTAATAAA+AGG + chr5.3:13648375-13648394 None:intergenic 20.0%
!! TATCTATACAGCAAATATAA+AGG + chr5.3:13647829-13647848 None:intergenic 20.0%
!! TCAATGAAAACAAAAAATAG+AGG - chr5.3:13649910-13649929 MS.gene64856:intron 20.0%
!! TTACAATAAACAACCTTTAA+AGG + chr5.3:13647747-13647766 None:intergenic 20.0%
!! TTCCTATAAAACTTATTTCA+AGG - chr5.3:13647547-13647566 MS.gene64856:intron 20.0%
!! TTCTTTCAATCAATTATTTC+AGG - chr5.3:13649822-13649841 MS.gene64856:intron 20.0%
!! TTGAAATTAAGAAAACATTG+AGG - chr5.3:13649413-13649432 MS.gene64856:intron 20.0%
!! TTGAAATTTGAATCATTTCA+TGG - chr5.3:13646732-13646751 MS.gene64856:CDS 20.0%
!! TTTCTTAACAATTTCTCTTA+TGG + chr5.3:13646469-13646488 None:intergenic 20.0%
!!! AATGTTTTCTTAATTTCAAG+TGG + chr5.3:13649412-13649431 None:intergenic 20.0%
!!! ATCCTTGAAATAAGTTTTAT+AGG + chr5.3:13647552-13647571 None:intergenic 20.0%
!!! ATGTTGATATTGTTGTTATT+AGG - chr5.3:13645987-13646006 MS.gene64856:intron 20.0%
!!! CAAAAAATTATCTTTTCCAA+AGG - chr5.3:13647441-13647460 MS.gene64856:intron 20.0%
!!! GTCTTTTTTGCTTATAATTT+GGG + chr5.3:13647391-13647410 None:intergenic 20.0%
!!! TGTTGATATTGTTGTTATTA+GGG - chr5.3:13645988-13646007 MS.gene64856:intron 20.0%
!!! TTAACTTTTGTCATTTGAAA+AGG - chr5.3:13649218-13649237 MS.gene64856:intron 20.0%
!!! TTTTTGAAAGCAAATTAAAC+AGG - chr5.3:13648569-13648588 MS.gene64856:intron 20.0%
!!! TTTTTGCTTATAATTTAGGA+CGG + chr5.3:13647351-13647370 None:intergenic 20.0%
! AAAAAGAAAATCTAGGAAGA+AGG - chr5.3:13649073-13649092 MS.gene64856:intron 25.0%
! AAAAATGTTTAAACAAGTGC+TGG + chr5.3:13648264-13648283 None:intergenic 25.0%
! AAAATCAAAAGCAAAATGAC+TGG + chr5.3:13649494-13649513 None:intergenic 25.0%
! AAATCAAAAGCAAAATGACT+GGG + chr5.3:13649493-13649512 None:intergenic 25.0%
! AACAAGATTTCCATAAAGAT+TGG + chr5.3:13649559-13649578 None:intergenic 25.0%
! ACAAGATTTCCATAAAGATT+GGG + chr5.3:13649558-13649577 None:intergenic 25.0%
! ATACACTGCTAAAATATTGA+AGG + chr5.3:13650127-13650146 None:intergenic 25.0%
! ATGAAAACAAAAAATAGAGG+TGG - chr5.3:13649913-13649932 MS.gene64856:intron 25.0%
! ATTTCATTATACTTGATTCC+AGG + chr5.3:13648114-13648133 None:intergenic 25.0%
! ATTTGATAAGAAAAATGCCA+CGG + chr5.3:13649694-13649713 None:intergenic 25.0%
! CCAAAAGTGGATAAATAATT+GGG + chr5.3:13648224-13648243 None:intergenic 25.0%
! GATGTAAAAACAATTTCCAT+TGG + chr5.3:13647527-13647546 None:intergenic 25.0%
! GTATCTAAATAACAGAAAGA+AGG - chr5.3:13648005-13648024 MS.gene64856:intron 25.0%
! GTTGGATGTTGTATTTAATT+AGG - chr5.3:13649240-13649259 MS.gene64856:intron 25.0%
! TAATCTTGATACAATCAAGA+TGG - chr5.3:13646246-13646265 MS.gene64856:intron 25.0%
! TTAGTAATATTTATACCTCC+CGG + chr5.3:13649624-13649643 None:intergenic 25.0%
! TTATTGTCGTGAGTTAATAA+GGG + chr5.3:13646558-13646577 None:intergenic 25.0%
! TTCCCATCTACAAATTAATT+AGG - chr5.3:13647027-13647046 MS.gene64856:intron 25.0%
! TTTATTGTCGTGAGTTAATA+AGG + chr5.3:13646559-13646578 None:intergenic 25.0%
!! AAACAATTTCCATTGGTTAT+TGG + chr5.3:13647520-13647539 None:intergenic 25.0%
!! ATGTATAATTTGCGTGTTTA+TGG - chr5.3:13646868-13646887 MS.gene64856:intron 25.0%
!! ATTAGGAGGTTTAATTTCTT+CGG - chr5.3:13647044-13647063 MS.gene64856:intron 25.0%
!! GTTACAGTTAAGTGATTTTT+CGG - chr5.3:13646604-13646623 MS.gene64856:intron 25.0%
!! TTGTTAGACATATTTTGCAT+CGG - chr5.3:13646989-13647008 MS.gene64856:intron 25.0%
!!! CTCCTAATTAATTTGTAGAT+GGG + chr5.3:13647032-13647051 None:intergenic 25.0%
!!! CTTTGCATTTAATTTTCCTT+TGG + chr5.3:13647460-13647479 None:intergenic 25.0%
!!! GAAGGTTGATTTTTCATTAA+TGG + chr5.3:13650109-13650128 None:intergenic 25.0%
!!! GGTCTTTTTTGCTTATAATT+TGG + chr5.3:13647392-13647411 None:intergenic 25.0%
AAATCTTGTTGCAAATACAG+CGG - chr5.3:13649569-13649588 MS.gene64856:intron 30.0%
AAGAATAAGGTCTGTTTGAA+AGG - chr5.3:13645839-13645858 MS.gene64856:intron 30.0%
AAGATTTCCATAAAGATTGG+GGG + chr5.3:13649556-13649575 None:intergenic 30.0%
AATAGTATCTTGCTTCCATA+TGG - chr5.3:13649711-13649730 MS.gene64856:intron 30.0%
AATCGAGATATTCAAGCTTA+AGG + chr5.3:13650416-13650435 None:intergenic 30.0%
AATTTCTCTTATGGTTCTCT+AGG + chr5.3:13646460-13646479 None:intergenic 30.0%
AGGAAATATAAACAGACACA+TGG + chr5.3:13648355-13648374 None:intergenic 30.0%
ATAAACATATCAGCCAAAAG+TGG + chr5.3:13648237-13648256 None:intergenic 30.0%
ATTCATTTATCTTCCTCAAC+AGG - chr5.3:13649955-13649974 MS.gene64856:intron 30.0%
ATTTGAATCATTTCATGGCT+AGG - chr5.3:13646737-13646756 MS.gene64856:intron 30.0%
CAAGATTTCCATAAAGATTG+GGG + chr5.3:13649557-13649576 None:intergenic 30.0%
CCATCTACAAATTAATTAGG+AGG - chr5.3:13647030-13647049 MS.gene64856:intron 30.0%
CTGCTAATTTGAGTAATTTC+TGG - chr5.3:13648950-13648969 MS.gene64856:intron 30.0%
CTTTAGTTGAGTCAAATAAC+GGG - chr5.3:13650236-13650255 MS.gene64856:CDS 30.0%
CTTTCTTGCTAGTAATTGAT+TGG - chr5.3:13649460-13649479 MS.gene64856:intron 30.0%
GAATGAAACAGTATTTGTGT+AGG - chr5.3:13649095-13649114 MS.gene64856:intron 30.0%
GATATTCAAGCTTAAGGTTA+AGG + chr5.3:13650410-13650429 None:intergenic 30.0%
GCCAAAAGTGGATAAATAAT+TGG + chr5.3:13648225-13648244 None:intergenic 30.0%
GCTAACTAAAAGAAAAGTAG+TGG - chr5.3:13647304-13647323 MS.gene64856:intron 30.0%
GCTTTAGTTGAGTCAAATAA+CGG - chr5.3:13650235-13650254 MS.gene64856:CDS 30.0%
GGAAATATAAACAGACACAT+GGG + chr5.3:13648354-13648373 None:intergenic 30.0%
GGAAATTTCCAATCATCTTT+GGG - chr5.3:13647266-13647285 MS.gene64856:intron 30.0%
GGAATCGATTAAGAAGAATA+AGG - chr5.3:13645826-13645845 MS.gene64856:intron 30.0%
GGACTATTCTTTAAATGTAG+AGG - chr5.3:13647796-13647815 MS.gene64856:intron 30.0%
GGATAAATAATTGGGATTCA+GGG + chr5.3:13648216-13648235 None:intergenic 30.0%
TATTACCAGTGAATGCAATA+CGG + chr5.3:13647214-13647233 None:intergenic 30.0%
TCAAATTAGCAGAAACAGAA+AGG + chr5.3:13648942-13648961 None:intergenic 30.0%
TCATCTCACAAGAAAAAACT+TGG - chr5.3:13646812-13646831 MS.gene64856:intron 30.0%
TCTCAATAACCAATAACCAA+TGG - chr5.3:13647508-13647527 MS.gene64856:intron 30.0%
TGGATAAATAATTGGGATTC+AGG + chr5.3:13648217-13648236 None:intergenic 30.0%
TTATTAGGGAGAATACTGAA+GGG - chr5.3:13646002-13646021 MS.gene64856:intron 30.0%
TTTAGTTGAGTCAAATAACG+GGG - chr5.3:13650237-13650256 MS.gene64856:CDS 30.0%
! AAGAATAGTCCTCTAAGAAA+CGG + chr5.3:13647787-13647806 None:intergenic 30.0%
! AATGCTATTTGGTAATATGC+GGG - chr5.3:13647125-13647144 MS.gene64856:intron 30.0%
! AATGGTAGTGACAACATAAT+TGG - chr5.3:13650026-13650045 MS.gene64856:intron 30.0%
! ATTTTGCATCGGAAATTTGT+GGG - chr5.3:13647000-13647019 MS.gene64856:intron 30.0%
! CCCAATTATTTATCCACTTT+TGG - chr5.3:13648221-13648240 MS.gene64856:CDS 30.0%
! CTAGATTTTCTTTTTGTGCA+GGG + chr5.3:13649068-13649087 None:intergenic 30.0%
! GAATGCTATTTGGTAATATG+CGG - chr5.3:13647124-13647143 MS.gene64856:intron 30.0%
! GTTTAATTTCTTCGGTGAAA+TGG - chr5.3:13647052-13647071 MS.gene64856:intron 30.0%
! TATTTTGCATCGGAAATTTG+TGG - chr5.3:13646999-13647018 MS.gene64856:intron 30.0%
! TGTATGAGATTTTCTATCGT+TGG - chr5.3:13648530-13648549 MS.gene64856:intron 30.0%
!! AGTATCTATTTCTGTTGAAC+TGG + chr5.3:13649287-13649306 None:intergenic 30.0%
!! ATTTGGTGCTATTAGTTTGT+TGG - chr5.3:13648296-13648315 MS.gene64856:CDS 30.0%
!! ATTTGTTATACTTCCTCAGA+GGG + chr5.3:13649329-13649348 None:intergenic 30.0%
!! CCTCCTAATTAATTTGTAGA+TGG + chr5.3:13647033-13647052 None:intergenic 30.0%
!! CTTTTGTCATTTGAAAAGGT+TGG - chr5.3:13649222-13649241 MS.gene64856:intron 30.0%
!!! ATGAAGGAAACTTTTTTGAG+AGG - chr5.3:13648640-13648659 MS.gene64856:intron 30.0%
!!! GATTTTTTTGTTCTCGAAAG+CGG - chr5.3:13647094-13647113 MS.gene64856:intron 30.0%
AAACAGTATTTGTGTAGGAC+AGG - chr5.3:13649100-13649119 MS.gene64856:intron 35.0%
AACAGTATTTGTGTAGGACA+GGG - chr5.3:13649101-13649120 MS.gene64856:intron 35.0%
AACATTATGAAGCTTGCAGA+TGG - chr5.3:13648048-13648067 MS.gene64856:intron 35.0%
AAGATGTGGAAATTCGACTT+AGG - chr5.3:13646345-13646364 MS.gene64856:intron 35.0%
AATAAGGTCTGTTTGAAAGG+TGG - chr5.3:13645842-13645861 MS.gene64856:intron 35.0%
AATGTCTTTGCAGGTAATGT+TGG - chr5.3:13650445-13650464 MS.gene64856:CDS 35.0%
AGATATTTCCCGTTTCTTAG+AGG - chr5.3:13647775-13647794 MS.gene64856:intron 35.0%
AGCTTGAATATCTCGATTCA+TGG - chr5.3:13650418-13650437 MS.gene64856:CDS 35.0%
AGGAATGACAACATTAGAGA+GGG - chr5.3:13646297-13646316 MS.gene64856:intron 35.0%
AGGTGGTATAGAAATCAAAC+TGG - chr5.3:13649930-13649949 MS.gene64856:intron 35.0%
ATGTCTTTGCAGGTAATGTT+GGG - chr5.3:13650446-13650465 MS.gene64856:CDS 35.0%
ATTACCAGTGAATGCAATAC+GGG + chr5.3:13647213-13647232 None:intergenic 35.0%
ATTCAAGCTTAAGGTTAAGG+TGG + chr5.3:13650407-13650426 None:intergenic 35.0%
ATTTCCAAGTCCTTAGAAAC+TGG - chr5.3:13647162-13647181 MS.gene64856:intron 35.0%
CAAGAAAAAACTTGGATTGC+TGG - chr5.3:13646820-13646839 MS.gene64856:intron 35.0%
CATTTATCCAGTGATTTCTG+TGG + chr5.3:13648445-13648464 None:intergenic 35.0%
CCTAGCAAAATTTGAGTATG+AGG + chr5.3:13647933-13647952 None:intergenic 35.0%
CCTGCACAAAAAGAAAATCT+AGG - chr5.3:13649066-13649085 MS.gene64856:intron 35.0%
CGGAAATTTCCAATCATCTT+TGG - chr5.3:13647265-13647284 MS.gene64856:intron 35.0%
GAAAATATAGATAGGGCAGT+TGG - chr5.3:13650312-13650331 MS.gene64856:CDS 35.0%
GAAAGCAAATTAAACAGGAG+TGG - chr5.3:13648574-13648593 MS.gene64856:intron 35.0%
GAATACTTATTGGGTAGCAA+AGG + chr5.3:13649036-13649055 None:intergenic 35.0%
GGATAAGAGAACTTACTAGA+GGG - chr5.3:13646418-13646437 MS.gene64856:intron 35.0%
GTTATTAGGGAGAATACTGA+AGG - chr5.3:13646001-13646020 MS.gene64856:intron 35.0%
GTTTATCATCTGAGAAGCTA+AGG + chr5.3:13647191-13647210 None:intergenic 35.0%
TAGGAATGACAACATTAGAG+AGG - chr5.3:13646296-13646315 MS.gene64856:intron 35.0%
TATTAGGGAGAATACTGAAG+GGG - chr5.3:13646003-13646022 MS.gene64856:intron 35.0%
TCAAGTATCCCAAAGATGAT+TGG + chr5.3:13647277-13647296 None:intergenic 35.0%
TCTTGATACAATCAAGATGG+TGG - chr5.3:13646249-13646268 MS.gene64856:intron 35.0%
TGCTTATAATATGGGACAGA+GGG - chr5.3:13647636-13647655 MS.gene64856:intron 35.0%
TGGATAAGAGAACTTACTAG+AGG - chr5.3:13646417-13646436 MS.gene64856:intron 35.0%
TGGCTCGTTGAATACTTATT+GGG + chr5.3:13649045-13649064 None:intergenic 35.0%
TTAAACAACAGAGAAACCCA+TGG + chr5.3:13648408-13648427 None:intergenic 35.0%
TTCTATGAGTACTCACTCAT+TGG - chr5.3:13646702-13646721 MS.gene64856:CDS 35.0%
TTGCTTATAATATGGGACAG+AGG - chr5.3:13647635-13647654 MS.gene64856:intron 35.0%
! AATTGCTTGTACCTTTTGCA+TGG - chr5.3:13646906-13646925 MS.gene64856:intron 35.0%
! AGAATAGTCCTCTAAGAAAC+GGG + chr5.3:13647786-13647805 None:intergenic 35.0%
! CCTAGATTTTCTTTTTGTGC+AGG + chr5.3:13649069-13649088 None:intergenic 35.0%
! CCTCATACTCAAATTTTGCT+AGG - chr5.3:13647930-13647949 MS.gene64856:intron 35.0%
! CTCTGAGGAAGTATAACAAA+TGG - chr5.3:13649328-13649347 MS.gene64856:intron 35.0%
! CTTTTGCATGGTAGATAACT+CGG - chr5.3:13646918-13646937 MS.gene64856:intron 35.0%
! GTAGAAATTGTGATAACGTG+TGG - chr5.3:13646672-13646691 MS.gene64856:intron 35.0%
! TGCTTATAATTTAGGACGGA+GGG + chr5.3:13647347-13647366 None:intergenic 35.0%
! TTGCTTATAATTTAGGACGG+AGG + chr5.3:13647348-13647367 None:intergenic 35.0%
! TTTCTTCGGTGAAATGGATT+CGG - chr5.3:13647058-13647077 MS.gene64856:intron 35.0%
! TTTTGCATCGGAAATTTGTG+GGG - chr5.3:13647001-13647020 MS.gene64856:intron 35.0%
!! ATCATCTTTGGGATACTTGA+TGG - chr5.3:13647277-13647296 MS.gene64856:intron 35.0%
!! CATTTGTTATACTTCCTCAG+AGG + chr5.3:13649330-13649349 None:intergenic 35.0%
!! CTATCGTTGGTTCAATCAAA+AGG - chr5.3:13648543-13648562 MS.gene64856:intron 35.0%
!! GTGAAACGAGTCATTTTAGA+GGG - chr5.3:13650631-13650650 MS.gene64856:CDS 35.0%
!! TAAACACTATTTCTGCTTGC+AGG - chr5.3:13649527-13649546 MS.gene64856:intron 35.0%
!! TCATTTTAGAGGGTAAGTAC+AGG - chr5.3:13650641-13650660 MS.gene64856:CDS 35.0%
!! TGTGAAACGAGTCATTTTAG+AGG - chr5.3:13650630-13650649 MS.gene64856:CDS 35.0%
!!! CTTTTTTGAGAGGATAACGA+AGG - chr5.3:13648650-13648669 MS.gene64856:intron 35.0%
!!! TTGCTGGCTTTTAGATGAAT+TGG - chr5.3:13646836-13646855 MS.gene64856:intron 35.0%
AAATTCGACTTAGGCGGTTT+GGG - chr5.3:13646354-13646373 MS.gene64856:intron 40.0%
AAGATGTCTGAGCATCATTG+CGG + chr5.3:13650575-13650594 None:intergenic 40.0%
AATACTGAAGGGGAATATGC+TGG - chr5.3:13646013-13646032 MS.gene64856:intron 40.0%
ACAACATTAGAGAGGGAGTT+GGG - chr5.3:13646304-13646323 MS.gene64856:intron 40.0%
ACCATGACATCAAATTGCTC+AGG + chr5.3:13648174-13648193 None:intergenic 40.0%
ACCTTGACATTGTGACATGT+GGG - chr5.3:13647895-13647914 MS.gene64856:intron 40.0%
AGAAAAGAAAGCCAATCCTG+TGG - chr5.3:13650534-13650553 MS.gene64856:CDS 40.0%
ATACTTCCTCAGAGGGATAA+AGG + chr5.3:13649322-13649341 None:intergenic 40.0%
ATCTGGAAGGATTGACTACT+AGG - chr5.3:13645957-13645976 MS.gene64856:intron 40.0%
ATGTGGAAATTCGACTTAGG+CGG - chr5.3:13646348-13646367 MS.gene64856:intron 40.0%
ATTCTTGGAATCTTGTCGAG+AGG - chr5.3:13648074-13648093 MS.gene64856:intron 40.0%
CACCTTGTTCAAATACAGCA+TGG + chr5.3:13650477-13650496 None:intergenic 40.0%
CATGGATGAAATGTCTTTGC+AGG - chr5.3:13650436-13650455 MS.gene64856:CDS 40.0%
CCACTGTTGATGTCCTTTAA+AGG - chr5.3:13647731-13647750 MS.gene64856:intron 40.0%
CGAGTTATCTACCATGCAAA+AGG + chr5.3:13646920-13646939 None:intergenic 40.0%
CGGTGATAGAGAATGCTATT+TGG - chr5.3:13647114-13647133 MS.gene64856:intron 40.0%
CTAGCCATTTGCTTATCTCT+GGG - chr5.3:13648599-13648618 MS.gene64856:intron 40.0%
CTCCTTACCAAAGAATCAAC+AGG + chr5.3:13646395-13646414 None:intergenic 40.0%
CTTGATTCCAGGATACTTTG+TGG + chr5.3:13648103-13648122 None:intergenic 40.0%
GACCATGCTGTATTTGAACA+AGG - chr5.3:13650472-13650491 MS.gene64856:CDS 40.0%
GCTTGCAGATGGTTTATTCT+TGG - chr5.3:13648059-13648078 MS.gene64856:intron 40.0%
GTGGCTCGTTGAATACTTAT+TGG + chr5.3:13649046-13649065 None:intergenic 40.0%
TAAACCCGTATTGCATTCAC+TGG - chr5.3:13647206-13647225 MS.gene64856:intron 40.0%
TACTGCATCAACAACCTCTT+GGG + chr5.3:13650695-13650714 None:intergenic 40.0%
TAGCCATTTGCTTATCTCTG+GGG - chr5.3:13648600-13648619 MS.gene64856:intron 40.0%
TCATAACGACAGTGACCATA+TGG + chr5.3:13649729-13649748 None:intergenic 40.0%
TCCAATCGTTCAGCAAATAC+AGG + chr5.3:13650604-13650623 None:intergenic 40.0%
TCTGTTGAACTGGCACAATA+TGG + chr5.3:13649277-13649296 None:intergenic 40.0%
TGATTCTTTGGTAAGGAGAG+TGG - chr5.3:13646397-13646416 MS.gene64856:intron 40.0%
TGCTCTCTTTGTAGTTACTG+TGG - chr5.3:13648862-13648881 MS.gene64856:intron 40.0%
TGGGGGCAATAACATAATGA+AGG - chr5.3:13648624-13648643 MS.gene64856:intron 40.0%
TGTCGTTATGAGATGTGTGA+GGG - chr5.3:13649738-13649757 MS.gene64856:intron 40.0%
TGTCTTTGCAGGTAATGTTG+GGG - chr5.3:13650447-13650466 MS.gene64856:CDS 40.0%
TTACTGCATCAACAACCTCT+TGG + chr5.3:13650696-13650715 None:intergenic 40.0%
TTCCTTACCAACATTTCCTG+CGG + chr5.3:13650503-13650522 None:intergenic 40.0%
TTCGAGAAATTCGAAGTGCA+CGG - chr5.3:13645773-13645792 MS.gene64856:CDS 40.0%
! ATCGATTCCATCACTTCAGA+TGG + chr5.3:13645815-13645834 None:intergenic 40.0%
! CAAGTTGACGGGATATGATT+AGG - chr5.3:13646277-13646296 MS.gene64856:intron 40.0%
! CCTTTAAAGGACATCAACAG+TGG + chr5.3:13647734-13647753 None:intergenic 40.0%
! GATTTTCTTTTTGTGCAGGG+TGG + chr5.3:13649065-13649084 None:intergenic 40.0%
! GCTTGTCAGTTGCTTTAATC+TGG - chr5.3:13645940-13645959 MS.gene64856:intron 40.0%
! GTCAGTTGCTTTAATCTGGA+AGG - chr5.3:13645944-13645963 MS.gene64856:intron 40.0%
! TCCTGTATTTGCTGAACGAT+TGG - chr5.3:13650600-13650619 MS.gene64856:CDS 40.0%
! TTCTTCGGTGAAATGGATTC+GGG - chr5.3:13647059-13647078 MS.gene64856:intron 40.0%
! TTGAGTCAAATAACGGGGAT+GGG - chr5.3:13650242-13650261 MS.gene64856:CDS 40.0%
!! ATATGCTGGTCTTGAACATG+AGG - chr5.3:13646027-13646046 MS.gene64856:intron 40.0%
!! ATGGTGGAAACTCAAGTTGA+CGG - chr5.3:13646265-13646284 MS.gene64856:intron 40.0%
!! GACCTGTTGATTCTTTGGTA+AGG - chr5.3:13646390-13646409 MS.gene64856:intron 40.0%
!! GAGAAGACCTGTTGATTCTT+TGG - chr5.3:13646385-13646404 MS.gene64856:intron 40.0%
AAGTACAGGACAAAGGACCT+TGG - chr5.3:13650655-13650674 MS.gene64856:CDS 45.0%
ACCCACATGTCACAATGTCA+AGG + chr5.3:13647899-13647918 None:intergenic 45.0%
ACTTCTGCCACAGAAATCAC+TGG - chr5.3:13648435-13648454 MS.gene64856:intron 45.0%
AGAATTAGTGCCAACTGCCA+TGG - chr5.3:13648388-13648407 MS.gene64856:intron 45.0%
AGAGGGTAAGTACAGGACAA+AGG - chr5.3:13650648-13650667 MS.gene64856:CDS 45.0%
AGCCATTTGCTTATCTCTGG+GGG - chr5.3:13648601-13648620 MS.gene64856:intron 45.0%
ATGAGTACTCACTCATTGGC+TGG - chr5.3:13646706-13646725 MS.gene64856:CDS 45.0%
CAAATGCTGGAGAGAAGATG+TGG - chr5.3:13646331-13646350 MS.gene64856:intron 45.0%
CAACATTAGAGAGGGAGTTG+GGG - chr5.3:13646305-13646324 MS.gene64856:intron 45.0%
CACCTTGACATTGTGACATG+TGG - chr5.3:13647894-13647913 MS.gene64856:intron 45.0%
CAGGTTACCCCCAATCTTTA+TGG - chr5.3:13649546-13649565 MS.gene64856:intron 45.0%
CATTACTTGTTCAACAGCGC+CGG + chr5.3:13645729-13645748 None:intergenic 45.0%
CTATCTCCTTTATCCCTCTG+AGG - chr5.3:13649313-13649332 MS.gene64856:intron 45.0%
CTGTCGTTATGAGATGTGTG+AGG - chr5.3:13649737-13649756 MS.gene64856:intron 45.0%
CTTGAACATGAGGTTGTTCC+CGG - chr5.3:13646037-13646056 MS.gene64856:intron 45.0%
GAAATTCGACTTAGGCGGTT+TGG - chr5.3:13646353-13646372 MS.gene64856:intron 45.0%
GAATTAGTGCCAACTGCCAT+GGG - chr5.3:13648389-13648408 MS.gene64856:intron 45.0%
GACAACATTAGAGAGGGAGT+TGG - chr5.3:13646303-13646322 MS.gene64856:intron 45.0%
GACGATACATCACACATACG+AGG - chr5.3:13646514-13646533 MS.gene64856:intron 45.0%
GCCTGAGCAATTTGATGTCA+TGG - chr5.3:13648170-13648189 MS.gene64856:CDS 45.0%
GCTAGCCATTTGCTTATCTC+TGG - chr5.3:13648598-13648617 MS.gene64856:intron 45.0%
GCTCTCATTTGATTATGCCG+TGG - chr5.3:13649674-13649693 MS.gene64856:intron 45.0%
GGTCTGTTTGAAAGGTGGAT+TGG - chr5.3:13645847-13645866 MS.gene64856:intron 45.0%
GTCGTTATGAGATGTGTGAG+GGG - chr5.3:13649739-13649758 MS.gene64856:intron 45.0%
TCCAAGTCCTTAGAAACTGG+TGG - chr5.3:13647165-13647184 MS.gene64856:intron 45.0%
TCGAATTTCTCGAAGTGCAC+TGG + chr5.3:13645767-13645786 None:intergenic 45.0%
TCGTTATGAGATGTGTGAGG+GGG - chr5.3:13649740-13649759 MS.gene64856:intron 45.0%
TGAGCATCATTGCGGAAGAA+AGG + chr5.3:13650567-13650586 None:intergenic 45.0%
TGATGCCATCACTGTTTCCA+AGG + chr5.3:13649127-13649146 None:intergenic 45.0%
TTCCGCAGGAAATGTTGGTA+AGG - chr5.3:13650498-13650517 MS.gene64856:CDS 45.0%
TTCCTCAACAGGTTGCAGTA+TGG - chr5.3:13649966-13649985 MS.gene64856:intron 45.0%
! AAGGTGTTTGAGGAGGTTTG+TGG + chr5.3:13645588-13645607 None:intergenic 45.0%
! AGCGATTCCATCTGAAGTGA+TGG - chr5.3:13645805-13645824 MS.gene64856:CDS 45.0%
! AGTTTTCTCGTCAGTCGTTG+AGG - chr5.3:13650185-13650204 MS.gene64856:intron 45.0%
! ATTTGCTTATCTCTGGGGGT+GGG - chr5.3:13648605-13648624 MS.gene64856:intron 45.0%
! GTTGAGTCAAATAACGGGGA+TGG - chr5.3:13650241-13650260 MS.gene64856:CDS 45.0%
! TGAGTACTCACTCATTGGCT+GGG - chr5.3:13646707-13646726 MS.gene64856:CDS 45.0%
! TGGAGATAAGGTGTTTGAGG+AGG + chr5.3:13645595-13645614 None:intergenic 45.0%
!! CTAGACTCAACAGTTCTGAG+TGG + chr5.3:13649772-13649791 None:intergenic 45.0%
!! GCTTAATTTGCAGCTGAGGA+AGG - chr5.3:13645898-13645917 MS.gene64856:intron 45.0%
!! GGGGTAATGGAGTTGTCAAA+TGG - chr5.3:13650008-13650027 MS.gene64856:intron 45.0%
!! GTTCGCTTAATTTGCAGCTG+AGG - chr5.3:13645894-13645913 MS.gene64856:intron 45.0%
!! TGGATTCGGGTTGCAAGTTT+AGG - chr5.3:13647072-13647091 MS.gene64856:intron 45.0%
!! TGGTGGAAACTCAAGTTGAC+GGG - chr5.3:13646266-13646285 MS.gene64856:intron 45.0%
!! TTATTAAGTTAATTAATTAA+TGG - chr5.3:13646145-13646164 MS.gene64856:intron 5.0%
ACAGAGAAACCCATGGCAGT+TGG + chr5.3:13648401-13648420 None:intergenic 50.0%
ACAGGACAAAGGACCTTGGA+GGG - chr5.3:13650659-13650678 MS.gene64856:CDS 50.0%
ATTTGTGTAGGACAGGGCCT+TGG - chr5.3:13649107-13649126 MS.gene64856:intron 50.0%
CACCCCCAGAGATAAGCAAA+TGG + chr5.3:13648606-13648625 None:intergenic 50.0%
CGCAATGTAACCCTAATCCC+CGG - chr5.3:13645680-13645699 MS.gene64856:CDS 50.0%
CGGCGCTGTTGAACAAGTAA+TGG - chr5.3:13645727-13645746 MS.gene64856:CDS 50.0%
CGGGGATTAGGGTTACATTG+CGG + chr5.3:13645682-13645701 None:intergenic 50.0%
CTCAACAGGTTGCAGTATGG+AGG - chr5.3:13649969-13649988 MS.gene64856:intron 50.0%
CTCCATACTGCAACCTGTTG+AGG + chr5.3:13649971-13649990 None:intergenic 50.0%
CTTCCACAAATTCAGCCCAC+AGG + chr5.3:13650352-13650371 None:intergenic 50.0%
CTTGAGACTCTCAACGACAC+CGG + chr5.3:13646059-13646078 None:intergenic 50.0%
CTTGTTGCAAATACAGCGGC+AGG - chr5.3:13649573-13649592 MS.gene64856:intron 50.0%
GAACTAACACCACCACCCAT+CGG + chr5.3:13645878-13645897 None:intergenic 50.0%
GAGAACTTACTAGAGGGCAG+AGG - chr5.3:13646424-13646443 MS.gene64856:intron 50.0%
GATTAGGGTTACATTGCGGG+GGG + chr5.3:13645678-13645697 None:intergenic 50.0%
GCTAAGGCCACCAGTTTCTA+AGG + chr5.3:13647175-13647194 None:intergenic 50.0%
GGATTAGGGTTACATTGCGG+GGG + chr5.3:13645679-13645698 None:intergenic 50.0%
GGGATTAGGGTTACATTGCG+GGG + chr5.3:13645680-13645699 None:intergenic 50.0%
GGGGATTAGGGTTACATTGC+GGG + chr5.3:13645681-13645700 None:intergenic 50.0%
GTCCTTTGTGTTGGACCTGT+GGG - chr5.3:13650334-13650353 MS.gene64856:CDS 50.0%
TACAGGACAAAGGACCTTGG+AGG - chr5.3:13650658-13650677 MS.gene64856:CDS 50.0%
TCAAGTGGCACCAAGAGAAC+AGG + chr5.3:13649397-13649416 None:intergenic 50.0%
TGCATCAACAACCTCTTGGG+TGG + chr5.3:13650692-13650711 None:intergenic 50.0%
TTGAGACTCTCAACGACACC+GGG + chr5.3:13646058-13646077 None:intergenic 50.0%
! CATTTGCTTATCTCTGGGGG+TGG - chr5.3:13648604-13648623 MS.gene64856:intron 50.0%
! CTGTGGGCTGAATTTGTGGA+AGG - chr5.3:13650350-13650369 MS.gene64856:CDS 50.0%
! GAGGTTGCCACAAAGTATCC+TGG - chr5.3:13648093-13648112 MS.gene64856:intron 50.0%
! GCCACCAGTTTCTAAGGACT+TGG + chr5.3:13647169-13647188 None:intergenic 50.0%
! GCGTGGAGATAAGGTGTTTG+AGG + chr5.3:13645598-13645617 None:intergenic 50.0%
! GTCAAATAACGGGGATGGGT+TGG - chr5.3:13650246-13650265 MS.gene64856:CDS 50.0%
! TTTGAACAAGGTGCTTCCGC+AGG - chr5.3:13650484-13650503 MS.gene64856:CDS 50.0%
! TTTGCTTATCTCTGGGGGTG+GGG - chr5.3:13648606-13648625 MS.gene64856:intron 50.0%
!! AAGGAGAAGTGCCACAGGAT+TGG + chr5.3:13650548-13650567 None:intergenic 50.0%
!! GAAGAAAGGAGAAGTGCCAC+AGG + chr5.3:13650553-13650572 None:intergenic 50.0%
ACCAAGAGAACAGGCGGGAA+GGG + chr5.3:13649388-13649407 None:intergenic 55.0%
AGCCCACAGGTCCAACACAA+AGG + chr5.3:13650339-13650358 None:intergenic 55.0%
AGGCAACAGCAGCTGTTGTG+GGG - chr5.3:13649989-13650008 MS.gene64856:intron 55.0%
AGTGGCACCAAGAGAACAGG+CGG + chr5.3:13649394-13649413 None:intergenic 55.0%
CAGCAGCTGTTGTGGGGTAA+TGG - chr5.3:13649995-13650014 MS.gene64856:intron 55.0%
CAGGGCCTTGGAAACAGTGA+TGG - chr5.3:13649119-13649138 MS.gene64856:intron 55.0%
GAGGCAACAGCAGCTGTTGT+GGG - chr5.3:13649988-13650007 MS.gene64856:intron 55.0%
GCATGTAGGTTACGGTACGG+GGG + chr5.3:13645637-13645656 None:intergenic 55.0%
GGAGTTGGGGTAGCAAATGC+TGG - chr5.3:13646318-13646337 MS.gene64856:intron 55.0%
GGCATGTAGGTTACGGTACG+GGG + chr5.3:13645638-13645657 None:intergenic 55.0%
GGGCAGTTGGTCCTTTGTGT+TGG - chr5.3:13650325-13650344 MS.gene64856:CDS 55.0%
GGGCATGTAGGTTACGGTAC+GGG + chr5.3:13645639-13645658 None:intergenic 55.0%
GGGGCATGTAGGTTACGGTA+CGG + chr5.3:13645640-13645659 None:intergenic 55.0%
GGTCCTTTGTGTTGGACCTG+TGG - chr5.3:13650333-13650352 MS.gene64856:CDS 55.0%
GGTGCTTCCGCAGGAAATGT+TGG - chr5.3:13650493-13650512 MS.gene64856:CDS 55.0%
TTACTAGAGGGCAGAGGCAG+AGG - chr5.3:13646430-13646449 MS.gene64856:intron 55.0%
! AATACAGCGGCAGGCATTGC+TGG - chr5.3:13649582-13649601 MS.gene64856:intron 55.0%
! GGACCTGTGGGCTGAATTTG+TGG - chr5.3:13650346-13650365 MS.gene64856:CDS 55.0%
! TTGCTTATCTCTGGGGGTGG+GGG - chr5.3:13648607-13648626 MS.gene64856:intron 55.0%
!! CGGCAGTGCTGTTTGTAGGA+TGG - chr5.3:13650279-13650298 MS.gene64856:CDS 55.0%
!! CGGTGTCGTTGAGAGTCTCA+AGG - chr5.3:13646057-13646076 MS.gene64856:intron 55.0%
ACCCTTCCCGCCTGTTCTCT+TGG - chr5.3:13649384-13649403 MS.gene64856:intron 60.0%
AGGGACAAGCACCACCCAAG+AGG - chr5.3:13650678-13650697 MS.gene64856:CDS 60.0%
CACCAAGAGAACAGGCGGGA+AGG + chr5.3:13649389-13649408 None:intergenic 60.0%
CTAATCCCCGGCGACGGAAT+CGG - chr5.3:13645692-13645711 MS.gene64856:CDS 60.0%
GATTCCGTCGCCGGGGATTA+GGG + chr5.3:13645693-13645712 None:intergenic 60.0%
GGAATCGGCCCTCTCGTAAC+CGG - chr5.3:13645707-13645726 MS.gene64856:CDS 60.0%
GGAGGCAACAGCAGCTGTTG+TGG - chr5.3:13649987-13650006 MS.gene64856:intron 60.0%
GTAACCCTAATCCCCGGCGA+CGG - chr5.3:13645686-13645705 MS.gene64856:CDS 60.0%
GTAGGTTACGGTACGGGGGT+GGG + chr5.3:13645633-13645652 None:intergenic 60.0%
GTGGCACCAAGAGAACAGGC+GGG + chr5.3:13649393-13649412 None:intergenic 60.0%
TGTAGGTTACGGTACGGGGG+TGG + chr5.3:13645634-13645653 None:intergenic 60.0%
!! AACGGGGATGGGTTGGAGTC+TGG - chr5.3:13650253-13650272 MS.gene64856:CDS 60.0%
!! AGGTGGATTGGCGACTCCGA+TGG - chr5.3:13645859-13645878 MS.gene64856:intron 60.0%
!! CAACAGCGCCGGTTACGAGA+GGG + chr5.3:13645718-13645737 None:intergenic 60.0%
!! GATGGGTTGGAGTCTGGTGG+CGG - chr5.3:13650259-13650278 MS.gene64856:CDS 60.0%
!! GGTGGATTGGCGACTCCGAT+GGG - chr5.3:13645860-13645879 MS.gene64856:intron 60.0%
!! GTGGCGGCAGTGCTGTTTGT+AGG - chr5.3:13650275-13650294 MS.gene64856:CDS 60.0%
!! TCAACAGCGCCGGTTACGAG+AGG + chr5.3:13645719-13645738 None:intergenic 60.0%
!! TGGAGGCACTGGTGTCATGC+CGG - chr5.3:13649602-13649621 MS.gene64856:intron 60.0%
ATTGCGGGGGGTTCCGTCTC+CGG + chr5.3:13645666-13645685 None:intergenic 65.0%
CGATTCCGTCGCCGGGGATT+AGG + chr5.3:13645694-13645713 None:intergenic 65.0%
GGGGCGGGGCATGTAGGTTA+CGG + chr5.3:13645645-13645664 None:intergenic 65.0%
GGGTGGTGCTTGTCCCTCCA+AGG + chr5.3:13650675-13650694 None:intergenic 65.0%
GTAACCTACATGCCCCGCCC+CGG - chr5.3:13645644-13645663 MS.gene64856:CDS 65.0%
TTACGGTACGGGGGTGGGTG+AGG + chr5.3:13645628-13645647 None:intergenic 65.0%
TTGGCGACTCCGATGGGTGG+TGG - chr5.3:13645866-13645885 MS.gene64856:intron 65.0%
! ACAGCGGCAGGCATTGCTGG+AGG - chr5.3:13649585-13649604 MS.gene64856:intron 65.0%
! GCAGGCATTGCTGGAGGCAC+TGG - chr5.3:13649591-13649610 MS.gene64856:intron 65.0%
! GGATTGGCGACTCCGATGGG+TGG - chr5.3:13645863-13645882 MS.gene64856:intron 65.0%
! GGTGGTGGCGCGTGGAGATA+AGG + chr5.3:13645607-13645626 None:intergenic 65.0%
!! GGAGGCACTGGTGTCATGCC+GGG - chr5.3:13649603-13649622 MS.gene64856:intron 65.0%
!! GGGGATGGGTTGGAGTCTGG+TGG - chr5.3:13650256-13650275 MS.gene64856:CDS 65.0%
TACATGCCCCGCCCCGGAGA+CGG - chr5.3:13645650-13645669 MS.gene64856:CDS 70.0%
TACGGGGGTGGGTGAGGTGG+TGG + chr5.3:13645622-13645641 None:intergenic 70.0%
TTGCGGGGGGTTCCGTCTCC+GGG + chr5.3:13645665-13645684 None:intergenic 70.0%
! AGAGGGCCGATTCCGTCGCC+GGG + chr5.3:13645701-13645720 None:intergenic 70.0%
! GAGAGGGCCGATTCCGTCGC+CGG + chr5.3:13645702-13645721 None:intergenic 70.0%
!! GGCACTGGTGTCATGCCGGG+AGG - chr5.3:13649606-13649625 MS.gene64856:intron 70.0%
CGGTACGGGGGTGGGTGAGG+TGG + chr5.3:13645625-13645644 None:intergenic 75.0%
GTCTCCGGGGCGGGGCATGT+AGG + chr5.3:13645651-13645670 None:intergenic 75.0%
TGCGGGGGGTTCCGTCTCCG+GGG + chr5.3:13645664-13645683 None:intergenic 75.0%
! GAGGGCCGATTCCGTCGCCG+GGG + chr5.3:13645700-13645719 None:intergenic 75.0%
! GTGGGTGAGGTGGTGGCGCG+TGG + chr5.3:13645615-13645634 None:intergenic 75.0%
! GGGGGGTTCCGTCTCCGGGG+CGG + chr5.3:13645661-13645680 None:intergenic 80.0%
! GGGGGTTCCGTCTCCGGGGC+GGG + chr5.3:13645660-13645679 None:intergenic 80.0%
! GGGGTTCCGTCTCCGGGGCG+GGG + chr5.3:13645659-13645678 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 13645569 13650732 13645569 ID=MS.gene64856
chr5.3 mRNA 13645569 13650732 13645569 ID=MS.gene64856.t1;Parent=MS.gene64856
chr5.3 exon 13650223 13650732 13650223 ID=MS.gene64856.t1.exon1;Parent=MS.gene64856.t1
chr5.3 CDS 13650223 13650732 13650223 ID=cds.MS.gene64856.t1;Parent=MS.gene64856.t1
chr5.3 exon 13648110 13648349 13648110 ID=MS.gene64856.t1.exon2;Parent=MS.gene64856.t1
chr5.3 CDS 13648110 13648349 13648110 ID=cds.MS.gene64856.t1;Parent=MS.gene64856.t1
chr5.3 exon 13646674 13646752 13646674 ID=MS.gene64856.t1.exon3;Parent=MS.gene64856.t1
chr5.3 CDS 13646674 13646752 13646674 ID=cds.MS.gene64856.t1;Parent=MS.gene64856.t1
chr5.3 exon 13645569 13645843 13645569 ID=MS.gene64856.t1.exon4;Parent=MS.gene64856.t1
chr5.3 CDS 13645569 13645843 13645569 ID=cds.MS.gene64856.t1;Parent=MS.gene64856.t1
Gene Sequence

>MS.gene64856

ATGGCGACGAGAAAATCCACAAACCTCCTCAAACACCTTATCTCCACGCGCCACCACCTCACCCACCCCCGTACCGTAACCTACATGCCCCGCCCCGGAGACGGAACCCCCCGCAATGTAACCCTAATCCCCGGCGACGGAATCGGCCCTCTCGTAACCGGCGCTGTTGAACAAGTAATGGAAGCGATGCATGCGCCAGTGCACTTCGAGAAATTCGAAGTGCACGGCAATATGAAAGCGATTCCATCTGAAGTGATGGAATCGATTAAGAAGAATAAGGTCTGTTTGAAAGGTGGATTGGCGACTCCGATGGGTGGTGGTGTTAGTTCGCTTAATTTGCAGCTGAGGAAGGAGCTTGATCTTTATGCTTCGCTTGTCAGTTGCTTTAATCTGGAAGGATTGACTACTAGGCATGATAATGTTGATATTGTTGTTATTAGGGAGAATACTGAAGGGGAATATGCTGGTCTTGAACATGAGGTTGTTCCCGGTGTCGTTGAGAGTCTCAAGGTATTCAAATTATGATCAATTTATTATACAAATATTACATTGTGTGTGTTTTGTTAGTAATTTTATTTATTAAGTTAATTAATTAATGGAAGATACATTTGATGATCAAACTTACTAGCGAAAGACATATTCAATGACCAAACTATCACATTTGAATATTAATTTTGTAATCTTGATACAATCAAGATGGTGGAAACTCAAGTTGACGGGATATGATTAGGAATGACAACATTAGAGAGGGAGTTGGGGTAGCAAATGCTGGAGAGAAGATGTGGAAATTCGACTTAGGCGGTTTGGGTGTGTAGAGAGAAGACCTGTTGATTCTTTGGTAAGGAGAGTGGATAAGAGAACTTACTAGAGGGCAGAGGCAGAGGAAGACCTAGAGAACCATAAGAGAAATTGTTAAGAAAGATCTAGAGATTAATGAGTTATAGTGACGATACATCACACATACGAGGACTAACATGATTTTTTATCCCTTATTAACTCACGACAATAAACTTACAATCAGAATAATTTAGAAACGTTACAGTTAAGTGATTTTTCGGTTGTATTTTTGTTAATTCAAACTTGTTGTAATCAGTAATTCACTTGTAGAAATTGTGATAACGTGTGGAGTTTGTTTCTATGAGTACTCACTCATTGGCTGGGCTTTGAAATTTGAATCATTTCATGGCTAGGTTTGCTGAATTGAGTAGTGACTAGTTTGTAAGCATTGTAATATTTGATCTATTCATCTCACAAGAAAAAACTTGGATTGCTGGCTTTTAGATGAATTGGAAAGCAGTGATGTATAATTTGCGTGTTTATGGTGAAGAATCTTGAAGAATTGCTTGTACCTTTTGCATGGTAGATAACTCGGAATATACTTTGTATTTAACAGGTCGTTAGACTTATTTTGCGTCACAAGTTGTTAGACATATTTTGCATCGGAAATTTGTGGGGAAATTCCCATCTACAAATTAATTAGGAGGTTTAATTTCTTCGGTGAAATGGATTCGGGTTGCAAGTTTAGGATTTTTTTGTTCTCGAAAGCGGTGATAGAGAATGCTATTTGGTAATATGCGGGTTTATTTTACTTATATTTCCAAGTCCTTAGAAACTGGTGGCCTTAGCTTCTCAGATGATAAACCCGTATTGCATTCACTGGTAATATTCGAATTTGAATATAATACATTCATTCTTACGGAAATTTCCAATCATCTTTGGGATACTTGATGGAAATGCTAACTAAAAGAAAAGTAGTGGTGCATAGTAGTTATACTCCCTCCGTCCTAAATTATAAGCAAAAAAAACTCATTTTCTTTGTCCCAAATTATAAGCAAAAAAGACCAACTTTTATCATATTTAATTATGTTATTTCAAAAAATTATCTTTTCCAAAGGAAAATTAAATGCAAAGTGCATTCAATTTGCTTTCTCTTTCATTTTCTCAATAACCAATAACCAATGGAAATTGTTTTTACATCTTCCTATAAAACTTATTTCAAGGATAACACAAGAAACTATGTTGCAAACTACTATGTTTTAGTTTTCTTAATAAATGTGATTTTTTTTTTGCTTATAATATGGGACAGAGGGAGTATTAATTAAGAATATTAGTTTTTAATTTTTTTATTTCTTTTGTATGCATTGTGTTGTGTACTTGCTGCTCCACTGTTGATGTCCTTTAAAGGTTGTTTATTGTAATCATGCTCAGATATTTCCCGTTTCTTAGAGGACTATTCTTTAAATGTAGAGGTTTTATTCCTTTATATTTGCTGTATAGATAGATTTGTATTGTAATATTTAAATGTTATATATCTCATGATGTTAGCACCTTGACATTGTGACATGTGGGTTTTTGTTTGCACCTCATACTCAAATTTTGCTAGGTAATAACAAAGTTCTGTTCAGAGCGCATTGCTAAATATGCTTTCGAGTATGCGTATCTAAATAACAGAAAGAAGGTGACTGCTGTGCACAAAGCAAACATTATGAAGCTTGCAGATGGTTTATTCTTGGAATCTTGTCGAGAGGTTGCCACAAAGTATCCTGGAATCAAGTATAATGAAATTATTGTAGACAATTGTTGCATGCAGCTTGTTTCAAAGCCTGAGCAATTTGATGTCATGGTATGTATATTTATAATTTGACCCTGAATCCCAATTATTTATCCACTTTTGGCTGATATGTTTATGAGTCCAGCACTTGTTTAAACATTTTTTTAAATAAAAAAATTTGGTGCTATTAGTTTGTTGGTTAAATAAGCAACTTTTTCAATTAAATTGTGACCCATGTGTCTGTTTATATTTCCTTTTATTACTTTGGAGAATTAGTGCCAACTGCCATGGGTTTCTCTGTTGTTTAATTTGTTGACTTCTGCCACAGAAATCACTGGATAAATGAGTAGCATTGTAATAAACTATAAACAATTATAGCCAAAGATAATTATTTGAGTCTTTACTTCTTTTGTATGAGATTTTCTATCGTTGGTTCAATCAAAAGGTTATTTTTGAAAGCAAATTAAACAGGAGTGGAGCTAGCCATTTGCTTATCTCTGGGGGTGGGGGCAATAACATAATGAAGGAAACTTTTTTGAGAGGATAACGAAGGAAACTTATTTCTCAAATAAACATATCAAACTTAATCAAAAATCAAAAGATTCTGTATATTTAATTCTTTTATATCATATGTAAATTAAATGAAATAAAAAAGAAATCATTCAATAGTGATTTTGAAAAGTTGAGTTGATAATTCTTTTATATCATCTGTTTTGTTTGTCTAGAAAAATTGAATTGCTTATGCTCTCTTTGTAGTTACTGTGGAGATTATAAGAATCAAAACAAGACAAATCAATCTAGCAATTAAGTTTTGTTTTACCTTTCTGTTTCTGCTAATTTGAGTAATTTCTGGTACAAATTGAGTGCTGCAAGTAATGTTTTAGTTATCAGATAAAGTCTTCTTTTTTGTTAGCCTTTGCTACCCAATAAGTATTCAACGAGCCACCCTGCACAAAAAGAAAATCTAGGAAGAAGGAATGAAACAGTATTTGTGTAGGACAGGGCCTTGGAAACAGTGATGGCATCATAATTTTTTTAACATAGGTTCCCTAGTTTAATCTAATTATATGAGAGGATATATGATAAATAAGTTATTAATTAACTTTTGTCATTTGAAAAGGTTGGATGTTGTATTTAATTAGGTTTTGATATGGCCATATTGTGCCAGTTCAACAGAAATAGATACTAGTTAGCTATCTCCTTTATCCCTCTGAGGAAGTATAACAAATGGATTTGTATTTGTAATAATGAATATAAAAGGGGTACCCTTCCCGCCTGTTCTCTTGGTGCCACTTGAAATTAAGAAAACATTGAGGAGTTTGTTGATTAACATGACGATTCTTTCTTGCTAGTAATTGATTGGTCTTTTTCCCAGTCATTTTGCTTTTGATTTTAAATTCAAAGTCATAAACACTATTTCTGCTTGCAGGTTACCCCCAATCTTTATGGAAATCTTGTTGCAAATACAGCGGCAGGCATTGCTGGAGGCACTGGTGTCATGCCGGGAGGTATAAATATTACTAATAACTATCGCTAATGTGTTGAAACTCTAGAGCTCTCATTTGATTATGCCGTGGCATTTTTCTTATCAAATAGTATCTTGCTTCCATATGGTCACTGTCGTTATGAGATGTGTGAGGGGGTGACTACCACTCAGAACTGTTGAGTCTAGATTTAGAGTGTATTAATCATGTTTGTCTAGTTCTTTCAATCAATTATTTCAGGAACATTTTTCATTCATTGAAAACTCTGCCAAAATATAGTGATTGATTAAATTAGAGATTGTATATTCAATGAAAACAAAAAATAGAGGTGGTATAGAAATCAAACTGGAAATTCATTTATCTTCCTCAACAGGTTGCAGTATGGAGGCAACAGCAGCTGTTGTGGGGTAATGGAGTTGTCAAATGGTAGTGACAACATAATTGGCATTTTACTCTTCTAAAGTGAACATTTCACTTTAGATGATAAAGTAAGAAATCTCAACCATTAATGAAAAATCAACCTTCAATATTTTAGCAGTGTATAGTAAGTAAACTATGAATGTGTTGAAATATCGACTATAAGTTTTCTCGTCAGTCGTTGAGGTCTTGTTGTACTCTAAAATAAGAGTTTGCTTTAGTTGAGTCAAATAACGGGGATGGGTTGGAGTCTGGTGGCGGCAGTGCTGTTTGTAGGATGGAGATTCTAATGAAAATATAGATAGGGCAGTTGGTCCTTTGTGTTGGACCTGTGGGCTGAATTTGTGGAAGGTTATCTAGATAGAAGTGATTGTTGAATAAAGCCACCTTAACCTTAAGCTTGAATATCTCGATTCATGGATGAAATGTCTTTGCAGGTAATGTTGGGGCTGACCATGCTGTATTTGAACAAGGTGCTTCCGCAGGAAATGTTGGTAAGGAAAAAGTAGTACAAGAAAAGAAAGCCAATCCTGTGGCACTTCTCCTTTCTTCCGCAATGATGCTCAGACATCTTCAGTTTCCTGTATTTGCTGAACGATTGGAAAGTGCTGTGAAACGAGTCATTTTAGAGGGTAAGTACAGGACAAAGGACCTTGGAGGGACAAGCACCACCCAAGAGGTTGTTGATGCAGTAATAGATGCATTGCAGTAA

Protein sequence

>MS.gene64856.t1

MATRKSTNLLKHLISTRHHLTHPRTVTYMPRPGDGTPRNVTLIPGDGIGPLVTGAVEQVMEAMHAPVHFEKFEVHGNMKAIPSEVMESIKKNKVCLKGGLATPMGGGVSSLNLQLRKELDLYASLVSCFNLEGLTTRHDNVDIVVIRENTEGEYAGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVATKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGKEKVVQEKKANPVALLLSSAMMLRHLQFPVFAERLESAVKRVILEGKYRTKDLGGTSTTQEVVDAVIDALQ