AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene65298


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene65298.t1 MTR_5g023740 98.638 367 5 0 1 367 1 367 0.0 743
MS.gene65298.t1 MTR_5g023740 97.548 367 5 1 1 367 1 363 0.0 729
MS.gene65298.t1 MTR_8g074030 88.441 372 37 2 1 367 1 371 0.0 673
MS.gene65298.t1 MTR_8g074030 87.366 372 37 3 1 367 1 367 0.0 660
MS.gene65298.t1 MTR_5g023740 98.195 277 5 0 1 277 1 277 0.0 563
MS.gene65298.t1 MTR_5g023740 98.195 277 5 0 1 277 1 277 0.0 562
MS.gene65298.t1 MTR_5g023740 96.751 277 5 1 1 277 1 273 0.0 551
MS.gene65298.t1 MTR_1g064070 48.634 366 174 5 6 366 2 358 1.03e-118 348
MS.gene65298.t1 MTR_3g101470 48.732 355 169 3 17 366 7 353 1.35e-116 342
MS.gene65298.t1 MTR_2g104610 29.132 357 197 15 32 349 35 374 7.26e-28 113
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene65298.t1 AT4G35260 84.973 366 54 1 3 367 2 367 0.0 637
MS.gene65298.t1 AT4G35650 81.421 366 66 1 4 367 3 368 0.0 627
MS.gene65298.t1 AT2G17130 81.967 366 65 1 3 367 2 367 0.0 617
MS.gene65298.t1 AT2G17130 80.874 366 65 2 3 367 2 363 0.0 605
MS.gene65298.t1 AT5G03290 51.190 336 156 2 36 366 42 374 1.75e-117 345
MS.gene65298.t1 AT3G09810 51.190 336 156 4 36 366 42 374 8.08e-113 333
MS.gene65298.t1 AT1G32480 62.500 224 69 5 37 257 2 213 1.16e-90 271
MS.gene65298.t1 AT1G80560 29.630 351 197 13 40 354 45 381 1.48e-30 120
MS.gene65298.t1 AT5G14200 28.792 389 224 16 1 349 5 380 1.59e-30 120
MS.gene65298.t1 AT5G14200 28.792 389 224 16 1 349 5 380 1.63e-30 120
MS.gene65298.t1 AT1G31180 28.974 390 223 16 1 349 1 377 2.74e-30 120
MS.gene65298.t1 AT1G31180 28.974 390 223 16 1 349 16 392 4.45e-30 119
MS.gene65298.t1 AT5G14200 26.596 282 165 10 1 246 5 280 3.38e-13 70.1

Find 107 sgRNAs with CRISPR-Local

Find 366 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGATTCCGTCGCCGGGGATT+AGG 0.169058 5.2:+14599475 None:intergenic
ATGTTGATATTGTTGTTATT+AGG 0.236899 5.2:-14599179 MS.gene65298:CDS
GGGGATTAGGGTTACATTGC+GGG 0.275523 5.2:+14599488 None:intergenic
TGTTGATATTGTTGTTATTA+GGG 0.290952 5.2:-14599178 MS.gene65298:CDS
GCTTGCAGATGGTTTATTCT+TGG 0.304514 5.2:-14597107 MS.gene65298:CDS
GATTCCGTCGCCGGGGATTA+GGG 0.344303 5.2:+14599476 None:intergenic
GTGGGTGAGGTGGTGGCGCG+TGG 0.349708 5.2:+14599554 None:intergenic
AACAAGATTTCCATAAAGAT+TGG 0.353298 5.2:+14595611 None:intergenic
CTTGAACATGAGGTTGTTCC+CGG 0.354977 5.2:-14599129 MS.gene65298:CDS
GCTTGTCAGTTGCTTTAATC+TGG 0.358844 5.2:-14599226 MS.gene65298:CDS
AATACAGCGGCAGGCATTGC+TGG 0.369556 5.2:-14595585 MS.gene65298:CDS
ATTTCATTATACTTGATTCC+AGG 0.392374 5.2:+14597055 None:intergenic
ATCTGGAAGGATTGACTACT+AGG 0.394728 5.2:-14599209 MS.gene65298:CDS
ACAAGATTTCCATAAAGATT+GGG 0.395363 5.2:+14595612 None:intergenic
GGAATCGATTAAGAAGAATA+AGG 0.408209 5.2:-14599340 MS.gene65298:CDS
GGGGTTCCGTCTCCGGGGCG+GGG 0.409508 5.2:+14599510 None:intergenic
GGCATGTAGGTTACGGTACG+GGG 0.414877 5.2:+14599531 None:intergenic
TCCAATCGTTCAGCAAATAC+AGG 0.416645 5.2:+14594566 None:intergenic
GGGATTAGGGTTACATTGCG+GGG 0.421936 5.2:+14599489 None:intergenic
ATGTCTTTGCAGGTAATGTT+GGG 0.422079 5.2:-14594721 MS.gene65298:intron
GGAATCGGCCCTCTCGTAAC+CGG 0.429953 5.2:-14599459 MS.gene65298:CDS
GGGCATGTAGGTTACGGTAC+GGG 0.430343 5.2:+14599530 None:intergenic
CTTGATTCCAGGATACTTTG+TGG 0.435276 5.2:+14597066 None:intergenic
TCCTGTATTTGCTGAACGAT+TGG 0.436123 5.2:-14594567 MS.gene65298:CDS
GCAGGCATTGCTGGAGGCAC+TGG 0.441704 5.2:-14595576 MS.gene65298:CDS
CTAATCCCCGGCGACGGAAT+CGG 0.445934 5.2:-14599474 MS.gene65298:CDS
CGGGGATTAGGGTTACATTG+CGG 0.449437 5.2:+14599487 None:intergenic
AAGAATAAGGTCTGTTTGAA+AGG 0.455164 5.2:-14599327 MS.gene65298:CDS
GTCTCCGGGGCGGGGCATGT+AGG 0.455315 5.2:+14599518 None:intergenic
TCGAATTTCTCGAAGTGCAC+TGG 0.458066 5.2:+14599402 None:intergenic
GGAGGCACTGGTGTCATGCC+GGG 0.461037 5.2:-14595564 MS.gene65298:CDS
TACTGCATCAACAACCTCTT+GGG 0.461914 5.2:+14594475 None:intergenic
GGGTGGTGCTTGTCCCTCCA+AGG 0.470554 5.2:+14594495 None:intergenic
ATCGATTCCATCACTTCAGA+TGG 0.475497 5.2:+14599354 None:intergenic
TTACTGCATCAACAACCTCT+TGG 0.475996 5.2:+14594474 None:intergenic
AGAGGGCCGATTCCGTCGCC+GGG 0.478788 5.2:+14599468 None:intergenic
GCCTGAGCAATTTGATGTCA+TGG 0.486144 5.2:-14596996 MS.gene65298:intron
CTTGTTGCAAATACAGCGGC+AGG 0.486316 5.2:-14595594 MS.gene65298:CDS
AAGGAGAAGTGCCACAGGAT+TGG 0.491158 5.2:+14594622 None:intergenic
AAGGTGTTTGAGGAGGTTTG+TGG 0.493042 5.2:+14599581 None:intergenic
GAGAGGGCCGATTCCGTCGC+CGG 0.493954 5.2:+14599467 None:intergenic
GGATTAGGGTTACATTGCGG+GGG 0.495232 5.2:+14599490 None:intergenic
GTCAGTTGCTTTAATCTGGA+AGG 0.496580 5.2:-14599222 MS.gene65298:CDS
TGGAGGCACTGGTGTCATGC+CGG 0.510683 5.2:-14595565 MS.gene65298:CDS
TTGGCGACTCCGATGGGTGG+TGG 0.513125 5.2:-14599300 MS.gene65298:CDS
GAGGTTGCCACAAAGTATCC+TGG 0.516332 5.2:-14597073 MS.gene65298:CDS
CATTACTTGCTCAACAGCGC+CGG 0.519638 5.2:+14599440 None:intergenic
AATAAGGTCTGTTTGAAAGG+TGG 0.522695 5.2:-14599324 MS.gene65298:CDS
GCGTGGAGATAAGGTGTTTG+AGG 0.525687 5.2:+14599571 None:intergenic
AATGTCTTTGCAGGTAATGT+TGG 0.527179 5.2:-14594722 MS.gene65298:intron
CAAGATTTCCATAAAGATTG+GGG 0.528612 5.2:+14595613 None:intergenic
GCTTAATTTGCAGCTGAGGA+AGG 0.528655 5.2:-14599268 MS.gene65298:CDS
TGAGCATCATTGCGGAAGAA+AGG 0.530564 5.2:+14594603 None:intergenic
GGGGCGGGGCATGTAGGTTA+CGG 0.533314 5.2:+14599524 None:intergenic
TACATGCCCCGCCCCGGAGA+CGG 0.536211 5.2:-14599516 MS.gene65298:CDS
TTTGAACAAGGTGCTTCCGC+AGG 0.536373 5.2:-14594683 MS.gene65298:CDS
GTTATTAGGGAGAATACTGA+AGG 0.537381 5.2:-14599165 MS.gene65298:CDS
GGTGGTGGCGCGTGGAGATA+AGG 0.541475 5.2:+14599562 None:intergenic
CGGCGCTGTTGAGCAAGTAA+TGG 0.541644 5.2:-14599439 MS.gene65298:CDS
GGTGGATTGGCGACTCCGAT+GGG 0.544930 5.2:-14599306 MS.gene65298:CDS
TTGAGACTCTCAACGACACC+GGG 0.546059 5.2:+14599111 None:intergenic
GGTCTGTTTGAAAGGTGGAT+TGG 0.550611 5.2:-14599319 MS.gene65298:CDS
AGCGATTCCATCTGAAGTGA+TGG 0.550636 5.2:-14599361 MS.gene65298:CDS
AGGTGGATTGGCGACTCCGA+TGG 0.556949 5.2:-14599307 MS.gene65298:CDS
AACATTATGAAGCTTGCAGA+TGG 0.557251 5.2:-14597118 MS.gene65298:CDS
ACCATGACATCAAATTGCTC+AGG 0.558319 5.2:+14596995 None:intergenic
GGTGCTTCCGCAGGAAATGT+TGG 0.560130 5.2:-14594674 MS.gene65298:CDS
GATTAGGGTTACATTGCGGG+GGG 0.563580 5.2:+14599491 None:intergenic
CGCAATGTAACCCTAATCCC+CGG 0.573917 5.2:-14599486 MS.gene65298:CDS
TTCCGCAGGAAATGTTGGTA+AGG 0.574592 5.2:-14594669 MS.gene65298:CDS
AATACTGAAGGGGAATATGC+TGG 0.581107 5.2:-14599153 MS.gene65298:CDS
CTTGAGACTCTCAACGACAC+CGG 0.585873 5.2:+14599110 None:intergenic
ATTCTTGGAATCTTGTCGAG+AGG 0.590626 5.2:-14597092 MS.gene65298:CDS
GGATTGGCGACTCCGATGGG+TGG 0.593367 5.2:-14599303 MS.gene65298:CDS
GTAACCCTAATCCCCGGCGA+CGG 0.593645 5.2:-14599480 MS.gene65298:CDS
TACAGGACAAAGGACCTTGG+AGG 0.595343 5.2:-14594509 MS.gene65298:CDS
GTATCTAAATAACAGAAAGA+AGG 0.597022 5.2:-14597161 MS.gene65298:CDS
GTTCGCTTAATTTGCAGCTG+AGG 0.597579 5.2:-14599272 MS.gene65298:CDS
GGGGCATGTAGGTTACGGTA+CGG 0.599567 5.2:+14599529 None:intergenic
TGGAGATAAGGTGTTTGAGG+AGG 0.600685 5.2:+14599574 None:intergenic
GCATGTAGGTTACGGTACGG+GGG 0.601867 5.2:+14599532 None:intergenic
GTAACCTACATGCCCCGCCC+CGG 0.604970 5.2:-14599522 MS.gene65298:CDS
GAAGAAAGGAGAAGTGCCAC+AGG 0.610058 5.2:+14594617 None:intergenic
TGCATCAACAACCTCTTGGG+TGG 0.620983 5.2:+14594478 None:intergenic
CAACAGCGCCGGTTACGAGA+GGG 0.629447 5.2:+14599451 None:intergenic
TTCGAGAAATTCGAAGTGCA+CGG 0.630058 5.2:-14599393 MS.gene65298:CDS
CGGTGTCGTTGAGAGTCTCA+AGG 0.630865 5.2:-14599109 MS.gene65298:intron
ACAGGACAAAGGACCTTGGA+GGG 0.632351 5.2:-14594508 MS.gene65298:CDS
GGCACTGGTGTCATGCCGGG+AGG 0.634816 5.2:-14595561 MS.gene65298:intron
TATTAGGGAGAATACTGAAG+GGG 0.638863 5.2:-14599163 MS.gene65298:CDS
ACAGCGGCAGGCATTGCTGG+AGG 0.645225 5.2:-14595582 MS.gene65298:CDS
CACCTTGTTCAAATACAGCA+TGG 0.646572 5.2:+14594693 None:intergenic
AAGTACAGGACAAAGGACCT+TGG 0.646920 5.2:-14594512 MS.gene65298:CDS
TTCCTTACCAACATTTCCTG+CGG 0.649166 5.2:+14594667 None:intergenic
TCAACAGCGCCGGTTACGAG+AGG 0.650212 5.2:+14599450 None:intergenic
TTATTAGGGAGAATACTGAA+GGG 0.651297 5.2:-14599164 MS.gene65298:CDS
ATATGCTGGTCTTGAACATG+AGG 0.652648 5.2:-14599139 MS.gene65298:CDS
TGTCTTTGCAGGTAATGTTG+GGG 0.652865 5.2:-14594720 MS.gene65298:intron
AGAGGGTAAGTACAGGACAA+AGG 0.652879 5.2:-14594519 MS.gene65298:CDS
GAACTAACACCACCACCCAT+CGG 0.665416 5.2:+14599291 None:intergenic
AAGATTTCCATAAAGATTGG+GGG 0.670781 5.2:+14595614 None:intergenic
GACCATGCTGTATTTGAACA+AGG 0.680946 5.2:-14594695 MS.gene65298:CDS
AAGATGTCTGAGCATCATTG+CGG 0.685294 5.2:+14594595 None:intergenic
GAGGGCCGATTCCGTCGCCG+GGG 0.686332 5.2:+14599469 None:intergenic
AGGGACAAGCACCACCCAAG+AGG 0.691399 5.2:-14594489 MS.gene65298:CDS
AGAAAAGAAAGCCAATCCTG+TGG 0.714161 5.2:-14594633 MS.gene65298:CDS
AAATCTTGTTGCAAATACAG+CGG 0.734643 5.2:-14595598 MS.gene65298:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTAAATAAAAAAATT+TGG - chr5.2:14597166-14597185 MS.gene65298:CDS 0.0%
!! TAATTAAATATGATAAAAGT+TGG + chr5.2:14596301-14596320 None:intergenic 10.0%
!! TTGTAATAATGAATATAAAA+GGG - chr5.2:14598246-14598265 MS.gene65298:intron 10.0%
!! TTTGTAATAATGAATATAAA+AGG - chr5.2:14598245-14598264 MS.gene65298:intron 10.0%
!!! TTTTTTTTTGCTTATAATAT+GGG - chr5.2:14596516-14596535 MS.gene65298:intron 10.0%
!!! TTTTTTTTTTGCTTATAATA+TGG - chr5.2:14596515-14596534 MS.gene65298:intron 10.0%
!! ATATAATACATTCATTCTTA+CGG - chr5.2:14596133-14596152 MS.gene65298:intron 15.0%
!! ATTCTAATGAAAATATAGAT+AGG - chr5.2:14599191-14599210 MS.gene65298:CDS 15.0%
!! CATATAATTAGATTAAACTA+GGG + chr5.2:14598057-14598076 None:intergenic 15.0%
!! TCATATAATTAGATTAAACT+AGG + chr5.2:14598058-14598077 None:intergenic 15.0%
!! TGTAATAATGAATATAAAAG+GGG - chr5.2:14598247-14598266 MS.gene65298:intron 15.0%
!! TTCTAATGAAAATATAGATA+GGG - chr5.2:14599192-14599211 MS.gene65298:CDS 15.0%
!!! CATCATAATTTTTTTAACAT+AGG - chr5.2:14598029-14598048 MS.gene65298:intron 15.0%
!!! GTTTTTTTTGCTTATAATTT+AGG + chr5.2:14596243-14596262 None:intergenic 15.0%
!!! TATATTTCCTTTTATTACTT+TGG - chr5.2:14597252-14597271 MS.gene65298:intron 15.0%
!!! TATTTAATTAGGTTTTGATA+TGG - chr5.2:14598138-14598157 MS.gene65298:intron 15.0%
!!! TTTAATCAATCACTATATTT+TGG + chr5.2:14598762-14598781 None:intergenic 15.0%
!! AAGACTCAAATAATTATCTT+TGG + chr5.2:14597388-14597407 None:intergenic 20.0%
!! AATATTCAAATGTGATAGTT+TGG + chr5.2:14595107-14595126 None:intergenic 20.0%
!! GAATATACTTTGTATTTAAC+AGG - chr5.2:14595828-14595847 MS.gene65298:intron 20.0%
!! GTTTAATCTAATTATATGAG+AGG - chr5.2:14598059-14598078 MS.gene65298:intron 20.0%
!! TAATTCTCCAAAGTAATAAA+AGG + chr5.2:14597262-14597281 None:intergenic 20.0%
!! TATCTATACAGCAAATATAA+AGG + chr5.2:14596717-14596736 None:intergenic 20.0%
!! TCAATGAAAACAAAAAATAG+AGG - chr5.2:14598797-14598816 MS.gene65298:intron 20.0%
!! TTACAATAAACAACCTTTAA+AGG + chr5.2:14596635-14596654 None:intergenic 20.0%
!! TTCCTATAAAACTTATTTCA+AGG - chr5.2:14596435-14596454 MS.gene65298:intron 20.0%
!! TTCTTTCAATCAATTATTTC+AGG - chr5.2:14598709-14598728 MS.gene65298:intron 20.0%
!! TTGAAATTAAGAAAACATTG+AGG - chr5.2:14598300-14598319 MS.gene65298:intron 20.0%
!! TTGAAATTTGAATCATTTCA+TGG - chr5.2:14595620-14595639 MS.gene65298:CDS 20.0%
!! TTTCTTAACAATTTCTCTTA+TGG + chr5.2:14595357-14595376 None:intergenic 20.0%
!!! AATGTTTTCTTAATTTCAAG+TGG + chr5.2:14598299-14598318 None:intergenic 20.0%
!!! ATCCTTGAAATAAGTTTTAT+AGG + chr5.2:14596440-14596459 None:intergenic 20.0%
!!! ATGTTGATATTGTTGTTATT+AGG - chr5.2:14594875-14594894 MS.gene65298:intron 20.0%
!!! CAAAAAATTATCTTTTCCAA+AGG - chr5.2:14596329-14596348 MS.gene65298:intron 20.0%
!!! GTCTTTTTTGCTTATAATTT+GGG + chr5.2:14596279-14596298 None:intergenic 20.0%
!!! TGTTGATATTGTTGTTATTA+GGG - chr5.2:14594876-14594895 MS.gene65298:intron 20.0%
!!! TTAACTTTTGTCATTTGAAA+AGG - chr5.2:14598105-14598124 MS.gene65298:intron 20.0%
!!! TTTTTGAAAGCAAATTAAAC+AGG - chr5.2:14597456-14597475 MS.gene65298:intron 20.0%
!!! TTTTTGCTTATAATTTAGGA+CGG + chr5.2:14596239-14596258 None:intergenic 20.0%
! AAAAAGAAAATCTAGGAAGA+AGG - chr5.2:14597960-14597979 MS.gene65298:intron 25.0%
! AAAAATGTTTAAACAAGTGC+TGG + chr5.2:14597152-14597171 None:intergenic 25.0%
! AAAATCAAAAGCAAAATGAC+TGG + chr5.2:14598381-14598400 None:intergenic 25.0%
! AAATCAAAAGCAAAATGACT+GGG + chr5.2:14598380-14598399 None:intergenic 25.0%
! AACAAGATTTCCATAAAGAT+TGG + chr5.2:14598446-14598465 None:intergenic 25.0%
! ACAAGATTTCCATAAAGATT+GGG + chr5.2:14598445-14598464 None:intergenic 25.0%
! ATACACTGCTAAAATATTGA+AGG + chr5.2:14599014-14599033 None:intergenic 25.0%
! ATGAAAACAAAAAATAGAGG+TGG - chr5.2:14598800-14598819 MS.gene65298:intron 25.0%
! ATTTCATTATACTTGATTCC+AGG + chr5.2:14597002-14597021 None:intergenic 25.0%
! ATTTGATAAGAAAAATGCCA+CGG + chr5.2:14598581-14598600 None:intergenic 25.0%
! CCAAAAGTGGATAAATAATT+GGG + chr5.2:14597112-14597131 None:intergenic 25.0%
! GATGTAAAAACAATTTCCAT+TGG + chr5.2:14596415-14596434 None:intergenic 25.0%
! GTATCTAAATAACAGAAAGA+AGG - chr5.2:14596893-14596912 MS.gene65298:intron 25.0%
! GTTGGATGTTGTATTTAATT+AGG - chr5.2:14598127-14598146 MS.gene65298:intron 25.0%
! TAATCTTGATACAATCAAGA+TGG - chr5.2:14595134-14595153 MS.gene65298:intron 25.0%
! TTAGTAATATTTATACCTCC+CGG + chr5.2:14598511-14598530 None:intergenic 25.0%
! TTATTGTCGTGAGTTAATAA+GGG + chr5.2:14595446-14595465 None:intergenic 25.0%
! TTCCCATCTACAAATTAATT+AGG - chr5.2:14595915-14595934 MS.gene65298:intron 25.0%
! TTTATTGTCGTGAGTTAATA+AGG + chr5.2:14595447-14595466 None:intergenic 25.0%
!! AAACAATTTCCATTGGTTAT+TGG + chr5.2:14596408-14596427 None:intergenic 25.0%
!! ATGTATAATTTGCGTGTTTA+TGG - chr5.2:14595756-14595775 MS.gene65298:intron 25.0%
!! ATTAGGAGGTTTAATTTCTT+CGG - chr5.2:14595932-14595951 MS.gene65298:intron 25.0%
!! GTTACAGTTAAGTGATTTTT+CGG - chr5.2:14595492-14595511 MS.gene65298:intron 25.0%
!! TTGTTAGACATATTTTGCAT+CGG - chr5.2:14595877-14595896 MS.gene65298:intron 25.0%
!!! CTCCTAATTAATTTGTAGAT+GGG + chr5.2:14595920-14595939 None:intergenic 25.0%
!!! CTTTGCATTTAATTTTCCTT+TGG + chr5.2:14596348-14596367 None:intergenic 25.0%
!!! GAAGGTTGATTTTTCATTAA+TGG + chr5.2:14598996-14599015 None:intergenic 25.0%
!!! GGTCTTTTTTGCTTATAATT+TGG + chr5.2:14596280-14596299 None:intergenic 25.0%
AAATCTTGTTGCAAATACAG+CGG - chr5.2:14598456-14598475 MS.gene65298:intron 30.0%
AAGAATAAGGTCTGTTTGAA+AGG - chr5.2:14594727-14594746 MS.gene65298:intron 30.0%
AAGATTTCCATAAAGATTGG+GGG + chr5.2:14598443-14598462 None:intergenic 30.0%
AATAGTATCTTGCTTCCATA+TGG - chr5.2:14598598-14598617 MS.gene65298:intron 30.0%
AATCGAGATATTCAAGCTTA+AGG + chr5.2:14599303-14599322 None:intergenic 30.0%
AATTTCTCTTATGGTTCTCT+AGG + chr5.2:14595348-14595367 None:intergenic 30.0%
AGGAAATATAAACAGACACA+TGG + chr5.2:14597242-14597261 None:intergenic 30.0%
ATAAACATATCAGCCAAAAG+TGG + chr5.2:14597125-14597144 None:intergenic 30.0%
ATTCATTTATCTTCCTCAAC+AGG - chr5.2:14598842-14598861 MS.gene65298:intron 30.0%
ATTTGAATCATTTCATGGCT+AGG - chr5.2:14595625-14595644 MS.gene65298:intron 30.0%
CAAGATTTCCATAAAGATTG+GGG + chr5.2:14598444-14598463 None:intergenic 30.0%
CCATCTACAAATTAATTAGG+AGG - chr5.2:14595918-14595937 MS.gene65298:intron 30.0%
CTGCTAATTTGAGTAATTTC+TGG - chr5.2:14597837-14597856 MS.gene65298:intron 30.0%
CTTTAGTTGAGTCAAATAAC+GGG - chr5.2:14599123-14599142 MS.gene65298:CDS 30.0%
CTTTCTTGCTAGTAATTGAT+TGG - chr5.2:14598347-14598366 MS.gene65298:intron 30.0%
GAATGAAACAGTATTTGTGT+AGG - chr5.2:14597982-14598001 MS.gene65298:intron 30.0%
GATATTCAAGCTTAAGGTTA+AGG + chr5.2:14599297-14599316 None:intergenic 30.0%
GCCAAAAGTGGATAAATAAT+TGG + chr5.2:14597113-14597132 None:intergenic 30.0%
GCTAACTAAAAGAAAAGTAG+TGG - chr5.2:14596192-14596211 MS.gene65298:intron 30.0%
GCTTTAGTTGAGTCAAATAA+CGG - chr5.2:14599122-14599141 MS.gene65298:CDS 30.0%
GGAAATATAAACAGACACAT+GGG + chr5.2:14597241-14597260 None:intergenic 30.0%
GGAAATTTCCAATCATCTTT+GGG - chr5.2:14596154-14596173 MS.gene65298:intron 30.0%
GGAATCGATTAAGAAGAATA+AGG - chr5.2:14594714-14594733 MS.gene65298:intron 30.0%
GGACTATTCTTTAAATGTAG+AGG - chr5.2:14596684-14596703 MS.gene65298:intron 30.0%
GGATAAATAATTGGGATTCA+GGG + chr5.2:14597104-14597123 None:intergenic 30.0%
TATTACCAGTGAATGCAATA+CGG + chr5.2:14596102-14596121 None:intergenic 30.0%
TCAAATTAGCAGAAACAGAA+AGG + chr5.2:14597829-14597848 None:intergenic 30.0%
TCATCTCACAAGAAAAAACT+TGG - chr5.2:14595700-14595719 MS.gene65298:intron 30.0%
TCTCAATAACCAATAACCAA+TGG - chr5.2:14596396-14596415 MS.gene65298:intron 30.0%
TGGATAAATAATTGGGATTC+AGG + chr5.2:14597105-14597124 None:intergenic 30.0%
TTATTAGGGAGAATACTGAA+GGG - chr5.2:14594890-14594909 MS.gene65298:intron 30.0%
TTTAGTTGAGTCAAATAACG+GGG - chr5.2:14599124-14599143 MS.gene65298:CDS 30.0%
! AAGAATAGTCCTCTAAGAAA+CGG + chr5.2:14596675-14596694 None:intergenic 30.0%
! AATGCTATTTGGTAATATGC+GGG - chr5.2:14596013-14596032 MS.gene65298:intron 30.0%
! AATGGTAGTGACAACATAAT+TGG - chr5.2:14598913-14598932 MS.gene65298:intron 30.0%
! ATTTTGCATCGGAAATTTGT+GGG - chr5.2:14595888-14595907 MS.gene65298:intron 30.0%
! CCCAATTATTTATCCACTTT+TGG - chr5.2:14597109-14597128 MS.gene65298:CDS 30.0%
! CTAGATTTTCTTTTTGTGCA+GGG + chr5.2:14597955-14597974 None:intergenic 30.0%
! GAATGCTATTTGGTAATATG+CGG - chr5.2:14596012-14596031 MS.gene65298:intron 30.0%
! GTTTAATTTCTTCGGTGAAA+TGG - chr5.2:14595940-14595959 MS.gene65298:intron 30.0%
! TATTTTGCATCGGAAATTTG+TGG - chr5.2:14595887-14595906 MS.gene65298:intron 30.0%
! TGTATGAGATTTTCTATCGT+TGG - chr5.2:14597417-14597436 MS.gene65298:intron 30.0%
!! AGTATCTATTTCTGTTGAAC+TGG + chr5.2:14598174-14598193 None:intergenic 30.0%
!! ATTTGGTGCTATTAGTTTGT+TGG - chr5.2:14597183-14597202 MS.gene65298:CDS 30.0%
!! ATTTGTTATACTTCCTCAGA+GGG + chr5.2:14598216-14598235 None:intergenic 30.0%
!! CCTCCTAATTAATTTGTAGA+TGG + chr5.2:14595921-14595940 None:intergenic 30.0%
!! CTTTTGTCATTTGAAAAGGT+TGG - chr5.2:14598109-14598128 MS.gene65298:intron 30.0%
!!! ATGAAGGAAACTTTTTTGAG+AGG - chr5.2:14597527-14597546 MS.gene65298:intron 30.0%
!!! GATTTTTTTGTTCTCGAAAG+CGG - chr5.2:14595982-14596001 MS.gene65298:intron 30.0%
AAACAGTATTTGTGTAGGAC+AGG - chr5.2:14597987-14598006 MS.gene65298:intron 35.0%
AACAGTATTTGTGTAGGACA+GGG - chr5.2:14597988-14598007 MS.gene65298:intron 35.0%
AACATTATGAAGCTTGCAGA+TGG - chr5.2:14596936-14596955 MS.gene65298:intron 35.0%
AAGATGTGGAAATTCGACTT+AGG - chr5.2:14595233-14595252 MS.gene65298:intron 35.0%
AATAAGGTCTGTTTGAAAGG+TGG - chr5.2:14594730-14594749 MS.gene65298:intron 35.0%
AATGTCTTTGCAGGTAATGT+TGG - chr5.2:14599332-14599351 MS.gene65298:CDS 35.0%
AGATATTTCCCGTTTCTTAG+AGG - chr5.2:14596663-14596682 MS.gene65298:intron 35.0%
AGCTTGAATATCTCGATTCA+TGG - chr5.2:14599305-14599324 MS.gene65298:CDS 35.0%
AGGAATGACAACATTAGAGA+GGG - chr5.2:14595185-14595204 MS.gene65298:intron 35.0%
AGGTGGTATAGAAATCAAAC+TGG - chr5.2:14598817-14598836 MS.gene65298:intron 35.0%
ATGTCTTTGCAGGTAATGTT+GGG - chr5.2:14599333-14599352 MS.gene65298:CDS 35.0%
ATTACCAGTGAATGCAATAC+GGG + chr5.2:14596101-14596120 None:intergenic 35.0%
ATTCAAGCTTAAGGTTAAGG+TGG + chr5.2:14599294-14599313 None:intergenic 35.0%
ATTTCCAAGTCCTTAGAAAC+TGG - chr5.2:14596050-14596069 MS.gene65298:intron 35.0%
CAAGAAAAAACTTGGATTGC+TGG - chr5.2:14595708-14595727 MS.gene65298:intron 35.0%
CATTTATCCAGTGATTTCTG+TGG + chr5.2:14597332-14597351 None:intergenic 35.0%
CCTAGCAAAATTTGAGTATG+AGG + chr5.2:14596821-14596840 None:intergenic 35.0%
CCTGCACAAAAAGAAAATCT+AGG - chr5.2:14597953-14597972 MS.gene65298:intron 35.0%
CGGAAATTTCCAATCATCTT+TGG - chr5.2:14596153-14596172 MS.gene65298:intron 35.0%
GAAAATATAGATAGGGCAGT+TGG - chr5.2:14599199-14599218 MS.gene65298:CDS 35.0%
GAAAGCAAATTAAACAGGAG+TGG - chr5.2:14597461-14597480 MS.gene65298:intron 35.0%
GAATACTTATTGGGTAGCAA+AGG + chr5.2:14597923-14597942 None:intergenic 35.0%
GGATAAGAGAACTTACTAGA+GGG - chr5.2:14595306-14595325 MS.gene65298:intron 35.0%
GTTATTAGGGAGAATACTGA+AGG - chr5.2:14594889-14594908 MS.gene65298:intron 35.0%
GTTTATCATCTGAGAAGCTA+AGG + chr5.2:14596079-14596098 None:intergenic 35.0%
TAGGAATGACAACATTAGAG+AGG - chr5.2:14595184-14595203 MS.gene65298:intron 35.0%
TATTAGGGAGAATACTGAAG+GGG - chr5.2:14594891-14594910 MS.gene65298:intron 35.0%
TCAAGTATCCCAAAGATGAT+TGG + chr5.2:14596165-14596184 None:intergenic 35.0%
TCTTGATACAATCAAGATGG+TGG - chr5.2:14595137-14595156 MS.gene65298:intron 35.0%
TGCTTATAATATGGGACAGA+GGG - chr5.2:14596524-14596543 MS.gene65298:intron 35.0%
TGGATAAGAGAACTTACTAG+AGG - chr5.2:14595305-14595324 MS.gene65298:intron 35.0%
TGGCTCGTTGAATACTTATT+GGG + chr5.2:14597932-14597951 None:intergenic 35.0%
TTAAACAACAGAGAAACCCA+TGG + chr5.2:14597295-14597314 None:intergenic 35.0%
TTCTATGAGTACTCACTCAT+TGG - chr5.2:14595590-14595609 MS.gene65298:CDS 35.0%
TTGCTTATAATATGGGACAG+AGG - chr5.2:14596523-14596542 MS.gene65298:intron 35.0%
! AATTGCTTGTACCTTTTGCA+TGG - chr5.2:14595794-14595813 MS.gene65298:intron 35.0%
! AGAATAGTCCTCTAAGAAAC+GGG + chr5.2:14596674-14596693 None:intergenic 35.0%
! CCTAGATTTTCTTTTTGTGC+AGG + chr5.2:14597956-14597975 None:intergenic 35.0%
! CCTCATACTCAAATTTTGCT+AGG - chr5.2:14596818-14596837 MS.gene65298:intron 35.0%
! CTCTGAGGAAGTATAACAAA+TGG - chr5.2:14598215-14598234 MS.gene65298:intron 35.0%
! CTTTTGCATGGTAGATAACT+CGG - chr5.2:14595806-14595825 MS.gene65298:intron 35.0%
! GTAGAAATTGTGATAACGTG+TGG - chr5.2:14595560-14595579 MS.gene65298:intron 35.0%
! TGCTTATAATTTAGGACGGA+GGG + chr5.2:14596235-14596254 None:intergenic 35.0%
! TTGCTTATAATTTAGGACGG+AGG + chr5.2:14596236-14596255 None:intergenic 35.0%
! TTTCTTCGGTGAAATGGATT+CGG - chr5.2:14595946-14595965 MS.gene65298:intron 35.0%
! TTTTGCATCGGAAATTTGTG+GGG - chr5.2:14595889-14595908 MS.gene65298:intron 35.0%
!! ATCATCTTTGGGATACTTGA+TGG - chr5.2:14596165-14596184 MS.gene65298:intron 35.0%
!! CATTTGTTATACTTCCTCAG+AGG + chr5.2:14598217-14598236 None:intergenic 35.0%
!! CTATCGTTGGTTCAATCAAA+AGG - chr5.2:14597430-14597449 MS.gene65298:intron 35.0%
!! GTGAAACGAGTCATTTTAGA+GGG - chr5.2:14599518-14599537 MS.gene65298:CDS 35.0%
!! TAAACACTATTTCTGCTTGC+AGG - chr5.2:14598414-14598433 MS.gene65298:intron 35.0%
!! TCATTTTAGAGGGTAAGTAC+AGG - chr5.2:14599528-14599547 MS.gene65298:CDS 35.0%
!! TGTGAAACGAGTCATTTTAG+AGG - chr5.2:14599517-14599536 MS.gene65298:CDS 35.0%
!!! CTTTTTTGAGAGGATAACGA+AGG - chr5.2:14597537-14597556 MS.gene65298:intron 35.0%
!!! TTGCTGGCTTTTAGATGAAT+TGG - chr5.2:14595724-14595743 MS.gene65298:intron 35.0%
AAATTCGACTTAGGCGGTTT+GGG - chr5.2:14595242-14595261 MS.gene65298:intron 40.0%
AAGATGTCTGAGCATCATTG+CGG + chr5.2:14599462-14599481 None:intergenic 40.0%
AATACTGAAGGGGAATATGC+TGG - chr5.2:14594901-14594920 MS.gene65298:intron 40.0%
ACAACATTAGAGAGGGAGTT+GGG - chr5.2:14595192-14595211 MS.gene65298:intron 40.0%
ACCATGACATCAAATTGCTC+AGG + chr5.2:14597062-14597081 None:intergenic 40.0%
ACCTTGACATTGTGACATGT+GGG - chr5.2:14596783-14596802 MS.gene65298:intron 40.0%
AGAAAAGAAAGCCAATCCTG+TGG - chr5.2:14599421-14599440 MS.gene65298:CDS 40.0%
ATACTTCCTCAGAGGGATAA+AGG + chr5.2:14598209-14598228 None:intergenic 40.0%
ATCTGGAAGGATTGACTACT+AGG - chr5.2:14594845-14594864 MS.gene65298:intron 40.0%
ATGTGGAAATTCGACTTAGG+CGG - chr5.2:14595236-14595255 MS.gene65298:intron 40.0%
ATTCTTGGAATCTTGTCGAG+AGG - chr5.2:14596962-14596981 MS.gene65298:intron 40.0%
CACCTTGTTCAAATACAGCA+TGG + chr5.2:14599364-14599383 None:intergenic 40.0%
CATGGATGAAATGTCTTTGC+AGG - chr5.2:14599323-14599342 MS.gene65298:CDS 40.0%
CCACTGTTGATGTCCTTTAA+AGG - chr5.2:14596619-14596638 MS.gene65298:intron 40.0%
CGAGTTATCTACCATGCAAA+AGG + chr5.2:14595808-14595827 None:intergenic 40.0%
CGGTGATAGAGAATGCTATT+TGG - chr5.2:14596002-14596021 MS.gene65298:intron 40.0%
CTAGCCATTTGCTTATCTCT+GGG - chr5.2:14597486-14597505 MS.gene65298:intron 40.0%
CTCCTTACCAAAGAATCAAC+AGG + chr5.2:14595283-14595302 None:intergenic 40.0%
CTTGATTCCAGGATACTTTG+TGG + chr5.2:14596991-14597010 None:intergenic 40.0%
GACCATGCTGTATTTGAACA+AGG - chr5.2:14599359-14599378 MS.gene65298:CDS 40.0%
GCTTGCAGATGGTTTATTCT+TGG - chr5.2:14596947-14596966 MS.gene65298:intron 40.0%
GTGGCTCGTTGAATACTTAT+TGG + chr5.2:14597933-14597952 None:intergenic 40.0%
TAAACCCGTATTGCATTCAC+TGG - chr5.2:14596094-14596113 MS.gene65298:intron 40.0%
TACTGCATCAACAACCTCTT+GGG + chr5.2:14599582-14599601 None:intergenic 40.0%
TAGCCATTTGCTTATCTCTG+GGG - chr5.2:14597487-14597506 MS.gene65298:intron 40.0%
TCATAACGACAGTGACCATA+TGG + chr5.2:14598616-14598635 None:intergenic 40.0%
TCCAATCGTTCAGCAAATAC+AGG + chr5.2:14599491-14599510 None:intergenic 40.0%
TCTGTTGAACTGGCACAATA+TGG + chr5.2:14598164-14598183 None:intergenic 40.0%
TGATTCTTTGGTAAGGAGAG+TGG - chr5.2:14595285-14595304 MS.gene65298:intron 40.0%
TGCTCTCTTTGTAGTTACTG+TGG - chr5.2:14597749-14597768 MS.gene65298:intron 40.0%
TGGGGGCAATAACATAATGA+AGG - chr5.2:14597511-14597530 MS.gene65298:intron 40.0%
TGTCGTTATGAGATGTGTGA+GGG - chr5.2:14598625-14598644 MS.gene65298:intron 40.0%
TGTCTTTGCAGGTAATGTTG+GGG - chr5.2:14599334-14599353 MS.gene65298:CDS 40.0%
TTACTGCATCAACAACCTCT+TGG + chr5.2:14599583-14599602 None:intergenic 40.0%
TTCCTTACCAACATTTCCTG+CGG + chr5.2:14599390-14599409 None:intergenic 40.0%
TTCGAGAAATTCGAAGTGCA+CGG - chr5.2:14594661-14594680 MS.gene65298:CDS 40.0%
! ATCGATTCCATCACTTCAGA+TGG + chr5.2:14594703-14594722 None:intergenic 40.0%
! CAAGTTGACGGGATATGATT+AGG - chr5.2:14595165-14595184 MS.gene65298:intron 40.0%
! CCTTTAAAGGACATCAACAG+TGG + chr5.2:14596622-14596641 None:intergenic 40.0%
! GATTTTCTTTTTGTGCAGGG+TGG + chr5.2:14597952-14597971 None:intergenic 40.0%
! GCTTGTCAGTTGCTTTAATC+TGG - chr5.2:14594828-14594847 MS.gene65298:intron 40.0%
! GTCAGTTGCTTTAATCTGGA+AGG - chr5.2:14594832-14594851 MS.gene65298:intron 40.0%
! TCCTGTATTTGCTGAACGAT+TGG - chr5.2:14599487-14599506 MS.gene65298:CDS 40.0%
! TTCTTCGGTGAAATGGATTC+GGG - chr5.2:14595947-14595966 MS.gene65298:intron 40.0%
! TTGAGTCAAATAACGGGGAT+GGG - chr5.2:14599129-14599148 MS.gene65298:CDS 40.0%
!! ATATGCTGGTCTTGAACATG+AGG - chr5.2:14594915-14594934 MS.gene65298:intron 40.0%
!! ATGGTGGAAACTCAAGTTGA+CGG - chr5.2:14595153-14595172 MS.gene65298:intron 40.0%
!! GACCTGTTGATTCTTTGGTA+AGG - chr5.2:14595278-14595297 MS.gene65298:intron 40.0%
!! GAGAAGACCTGTTGATTCTT+TGG - chr5.2:14595273-14595292 MS.gene65298:intron 40.0%
AAGTACAGGACAAAGGACCT+TGG - chr5.2:14599542-14599561 MS.gene65298:CDS 45.0%
ACCCACATGTCACAATGTCA+AGG + chr5.2:14596787-14596806 None:intergenic 45.0%
ACTTCTGCCACAGAAATCAC+TGG - chr5.2:14597322-14597341 MS.gene65298:intron 45.0%
AGAATTAGTGCCAACTGCCA+TGG - chr5.2:14597275-14597294 MS.gene65298:intron 45.0%
AGAGGGTAAGTACAGGACAA+AGG - chr5.2:14599535-14599554 MS.gene65298:CDS 45.0%
AGCCATTTGCTTATCTCTGG+GGG - chr5.2:14597488-14597507 MS.gene65298:intron 45.0%
ATGAGTACTCACTCATTGGC+TGG - chr5.2:14595594-14595613 MS.gene65298:CDS 45.0%
CAAATGCTGGAGAGAAGATG+TGG - chr5.2:14595219-14595238 MS.gene65298:intron 45.0%
CAACATTAGAGAGGGAGTTG+GGG - chr5.2:14595193-14595212 MS.gene65298:intron 45.0%
CACCTTGACATTGTGACATG+TGG - chr5.2:14596782-14596801 MS.gene65298:intron 45.0%
CAGGTTACCCCCAATCTTTA+TGG - chr5.2:14598433-14598452 MS.gene65298:intron 45.0%
CTATCTCCTTTATCCCTCTG+AGG - chr5.2:14598200-14598219 MS.gene65298:intron 45.0%
CTGTCGTTATGAGATGTGTG+AGG - chr5.2:14598624-14598643 MS.gene65298:intron 45.0%
CTTGAACATGAGGTTGTTCC+CGG - chr5.2:14594925-14594944 MS.gene65298:intron 45.0%
GAAATTCGACTTAGGCGGTT+TGG - chr5.2:14595241-14595260 MS.gene65298:intron 45.0%
GAATTAGTGCCAACTGCCAT+GGG - chr5.2:14597276-14597295 MS.gene65298:intron 45.0%
GACAACATTAGAGAGGGAGT+TGG - chr5.2:14595191-14595210 MS.gene65298:intron 45.0%
GACGATACATCACACATACG+AGG - chr5.2:14595402-14595421 MS.gene65298:intron 45.0%
GCCTGAGCAATTTGATGTCA+TGG - chr5.2:14597058-14597077 MS.gene65298:CDS 45.0%
GCTAGCCATTTGCTTATCTC+TGG - chr5.2:14597485-14597504 MS.gene65298:intron 45.0%
GCTCTCATTTGATTATGCCG+TGG - chr5.2:14598561-14598580 MS.gene65298:intron 45.0%
GGTCTGTTTGAAAGGTGGAT+TGG - chr5.2:14594735-14594754 MS.gene65298:intron 45.0%
GTCGTTATGAGATGTGTGAG+GGG - chr5.2:14598626-14598645 MS.gene65298:intron 45.0%
TCCAAGTCCTTAGAAACTGG+TGG - chr5.2:14596053-14596072 MS.gene65298:intron 45.0%
TCGAATTTCTCGAAGTGCAC+TGG + chr5.2:14594655-14594674 None:intergenic 45.0%
TCGTTATGAGATGTGTGAGG+GGG - chr5.2:14598627-14598646 MS.gene65298:intron 45.0%
TGAGCATCATTGCGGAAGAA+AGG + chr5.2:14599454-14599473 None:intergenic 45.0%
TGATGCCATCACTGTTTCCA+AGG + chr5.2:14598014-14598033 None:intergenic 45.0%
TTCCGCAGGAAATGTTGGTA+AGG - chr5.2:14599385-14599404 MS.gene65298:CDS 45.0%
TTCCTCAACAGGTTGCAGTA+TGG - chr5.2:14598853-14598872 MS.gene65298:intron 45.0%
! AAGGTGTTTGAGGAGGTTTG+TGG + chr5.2:14594476-14594495 None:intergenic 45.0%
! AGCGATTCCATCTGAAGTGA+TGG - chr5.2:14594693-14594712 MS.gene65298:CDS 45.0%
! AGTTTTCTCGTCAGTCGTTG+AGG - chr5.2:14599072-14599091 MS.gene65298:intron 45.0%
! ATTTGCTTATCTCTGGGGGT+GGG - chr5.2:14597492-14597511 MS.gene65298:intron 45.0%
! GTTGAGTCAAATAACGGGGA+TGG - chr5.2:14599128-14599147 MS.gene65298:CDS 45.0%
! TGAGTACTCACTCATTGGCT+GGG - chr5.2:14595595-14595614 MS.gene65298:CDS 45.0%
! TGGAGATAAGGTGTTTGAGG+AGG + chr5.2:14594483-14594502 None:intergenic 45.0%
!! CTAGACTCAACAGTTCTGAG+TGG + chr5.2:14598659-14598678 None:intergenic 45.0%
!! GCTTAATTTGCAGCTGAGGA+AGG - chr5.2:14594786-14594805 MS.gene65298:intron 45.0%
!! GGGGTAATGGAGTTGTCAAA+TGG - chr5.2:14598895-14598914 MS.gene65298:intron 45.0%
!! GTTCGCTTAATTTGCAGCTG+AGG - chr5.2:14594782-14594801 MS.gene65298:intron 45.0%
!! TGGATTCGGGTTGCAAGTTT+AGG - chr5.2:14595960-14595979 MS.gene65298:intron 45.0%
!! TGGTGGAAACTCAAGTTGAC+GGG - chr5.2:14595154-14595173 MS.gene65298:intron 45.0%
!! TTATTAAGTTAATTAATTAA+TGG - chr5.2:14595033-14595052 MS.gene65298:intron 5.0%
ACAGAGAAACCCATGGCAGT+TGG + chr5.2:14597288-14597307 None:intergenic 50.0%
ACAGGACAAAGGACCTTGGA+GGG - chr5.2:14599546-14599565 MS.gene65298:CDS 50.0%
ATTTGTGTAGGACAGGGCCT+TGG - chr5.2:14597994-14598013 MS.gene65298:intron 50.0%
CACCCCCAGAGATAAGCAAA+TGG + chr5.2:14597493-14597512 None:intergenic 50.0%
CATTACTTGCTCAACAGCGC+CGG + chr5.2:14594617-14594636 None:intergenic 50.0%
CGCAATGTAACCCTAATCCC+CGG - chr5.2:14594568-14594587 MS.gene65298:CDS 50.0%
CGGGGATTAGGGTTACATTG+CGG + chr5.2:14594570-14594589 None:intergenic 50.0%
CTCAACAGGTTGCAGTATGG+AGG - chr5.2:14598856-14598875 MS.gene65298:intron 50.0%
CTCCATACTGCAACCTGTTG+AGG + chr5.2:14598858-14598877 None:intergenic 50.0%
CTTCCACAAATTCAGCCCAC+AGG + chr5.2:14599239-14599258 None:intergenic 50.0%
CTTGAGACTCTCAACGACAC+CGG + chr5.2:14594947-14594966 None:intergenic 50.0%
CTTGTTGCAAATACAGCGGC+AGG - chr5.2:14598460-14598479 MS.gene65298:intron 50.0%
GAACTAACACCACCACCCAT+CGG + chr5.2:14594766-14594785 None:intergenic 50.0%
GAGAACTTACTAGAGGGCAG+AGG - chr5.2:14595312-14595331 MS.gene65298:intron 50.0%
GATTAGGGTTACATTGCGGG+GGG + chr5.2:14594566-14594585 None:intergenic 50.0%
GCTAAGGCCACCAGTTTCTA+AGG + chr5.2:14596063-14596082 None:intergenic 50.0%
GGATTAGGGTTACATTGCGG+GGG + chr5.2:14594567-14594586 None:intergenic 50.0%
GGGATTAGGGTTACATTGCG+GGG + chr5.2:14594568-14594587 None:intergenic 50.0%
GGGGATTAGGGTTACATTGC+GGG + chr5.2:14594569-14594588 None:intergenic 50.0%
GTCCTTTGTGTTGGACCTGT+GGG - chr5.2:14599221-14599240 MS.gene65298:CDS 50.0%
TACAGGACAAAGGACCTTGG+AGG - chr5.2:14599545-14599564 MS.gene65298:CDS 50.0%
TCAAGTGGCACCAAGAGAAC+AGG + chr5.2:14598284-14598303 None:intergenic 50.0%
TGCATCAACAACCTCTTGGG+TGG + chr5.2:14599579-14599598 None:intergenic 50.0%
TTGAGACTCTCAACGACACC+GGG + chr5.2:14594946-14594965 None:intergenic 50.0%
! CATTTGCTTATCTCTGGGGG+TGG - chr5.2:14597491-14597510 MS.gene65298:intron 50.0%
! CTGTGGGCTGAATTTGTGGA+AGG - chr5.2:14599237-14599256 MS.gene65298:CDS 50.0%
! GAGGTTGCCACAAAGTATCC+TGG - chr5.2:14596981-14597000 MS.gene65298:intron 50.0%
! GCCACCAGTTTCTAAGGACT+TGG + chr5.2:14596057-14596076 None:intergenic 50.0%
! GCGTGGAGATAAGGTGTTTG+AGG + chr5.2:14594486-14594505 None:intergenic 50.0%
! GTCAAATAACGGGGATGGGT+TGG - chr5.2:14599133-14599152 MS.gene65298:CDS 50.0%
! TTTGAACAAGGTGCTTCCGC+AGG - chr5.2:14599371-14599390 MS.gene65298:CDS 50.0%
! TTTGCTTATCTCTGGGGGTG+GGG - chr5.2:14597493-14597512 MS.gene65298:intron 50.0%
!! AAGGAGAAGTGCCACAGGAT+TGG + chr5.2:14599435-14599454 None:intergenic 50.0%
!! GAAGAAAGGAGAAGTGCCAC+AGG + chr5.2:14599440-14599459 None:intergenic 50.0%
ACCAAGAGAACAGGCGGGAA+GGG + chr5.2:14598275-14598294 None:intergenic 55.0%
AGCCCACAGGTCCAACACAA+AGG + chr5.2:14599226-14599245 None:intergenic 55.0%
AGGCAACAGCAGCTGTTGTG+GGG - chr5.2:14598876-14598895 MS.gene65298:intron 55.0%
AGTGGCACCAAGAGAACAGG+CGG + chr5.2:14598281-14598300 None:intergenic 55.0%
CAGCAGCTGTTGTGGGGTAA+TGG - chr5.2:14598882-14598901 MS.gene65298:intron 55.0%
CAGGGCCTTGGAAACAGTGA+TGG - chr5.2:14598006-14598025 MS.gene65298:intron 55.0%
CGGCGCTGTTGAGCAAGTAA+TGG - chr5.2:14594615-14594634 MS.gene65298:CDS 55.0%
GAGGCAACAGCAGCTGTTGT+GGG - chr5.2:14598875-14598894 MS.gene65298:intron 55.0%
GCATGTAGGTTACGGTACGG+GGG + chr5.2:14594525-14594544 None:intergenic 55.0%
GGAGTTGGGGTAGCAAATGC+TGG - chr5.2:14595206-14595225 MS.gene65298:intron 55.0%
GGCATGTAGGTTACGGTACG+GGG + chr5.2:14594526-14594545 None:intergenic 55.0%
GGGCAGTTGGTCCTTTGTGT+TGG - chr5.2:14599212-14599231 MS.gene65298:CDS 55.0%
GGGCATGTAGGTTACGGTAC+GGG + chr5.2:14594527-14594546 None:intergenic 55.0%
GGGGCATGTAGGTTACGGTA+CGG + chr5.2:14594528-14594547 None:intergenic 55.0%
GGTCCTTTGTGTTGGACCTG+TGG - chr5.2:14599220-14599239 MS.gene65298:CDS 55.0%
GGTGCTTCCGCAGGAAATGT+TGG - chr5.2:14599380-14599399 MS.gene65298:CDS 55.0%
TTACTAGAGGGCAGAGGCAG+AGG - chr5.2:14595318-14595337 MS.gene65298:intron 55.0%
! AATACAGCGGCAGGCATTGC+TGG - chr5.2:14598469-14598488 MS.gene65298:intron 55.0%
! GGACCTGTGGGCTGAATTTG+TGG - chr5.2:14599233-14599252 MS.gene65298:CDS 55.0%
! TTGCTTATCTCTGGGGGTGG+GGG - chr5.2:14597494-14597513 MS.gene65298:intron 55.0%
!! CGGCAGTGCTGTTTGTAGGA+TGG - chr5.2:14599166-14599185 MS.gene65298:CDS 55.0%
!! CGGTGTCGTTGAGAGTCTCA+AGG - chr5.2:14594945-14594964 MS.gene65298:intron 55.0%
ACCCTTCCCGCCTGTTCTCT+TGG - chr5.2:14598271-14598290 MS.gene65298:intron 60.0%
AGGGACAAGCACCACCCAAG+AGG - chr5.2:14599565-14599584 MS.gene65298:CDS 60.0%
CACCAAGAGAACAGGCGGGA+AGG + chr5.2:14598276-14598295 None:intergenic 60.0%
CTAATCCCCGGCGACGGAAT+CGG - chr5.2:14594580-14594599 MS.gene65298:CDS 60.0%
GATTCCGTCGCCGGGGATTA+GGG + chr5.2:14594581-14594600 None:intergenic 60.0%
GGAATCGGCCCTCTCGTAAC+CGG - chr5.2:14594595-14594614 MS.gene65298:CDS 60.0%
GGAGGCAACAGCAGCTGTTG+TGG - chr5.2:14598874-14598893 MS.gene65298:intron 60.0%
GTAACCCTAATCCCCGGCGA+CGG - chr5.2:14594574-14594593 MS.gene65298:CDS 60.0%
GTAGGTTACGGTACGGGGGT+GGG + chr5.2:14594521-14594540 None:intergenic 60.0%
GTGGCACCAAGAGAACAGGC+GGG + chr5.2:14598280-14598299 None:intergenic 60.0%
TGTAGGTTACGGTACGGGGG+TGG + chr5.2:14594522-14594541 None:intergenic 60.0%
!! AACGGGGATGGGTTGGAGTC+TGG - chr5.2:14599140-14599159 MS.gene65298:CDS 60.0%
!! AGGTGGATTGGCGACTCCGA+TGG - chr5.2:14594747-14594766 MS.gene65298:intron 60.0%
!! CAACAGCGCCGGTTACGAGA+GGG + chr5.2:14594606-14594625 None:intergenic 60.0%
!! GATGGGTTGGAGTCTGGTGG+CGG - chr5.2:14599146-14599165 MS.gene65298:CDS 60.0%
!! GGTGGATTGGCGACTCCGAT+GGG - chr5.2:14594748-14594767 MS.gene65298:intron 60.0%
!! GTGGCGGCAGTGCTGTTTGT+AGG - chr5.2:14599162-14599181 MS.gene65298:CDS 60.0%
!! TCAACAGCGCCGGTTACGAG+AGG + chr5.2:14594607-14594626 None:intergenic 60.0%
!! TGGAGGCACTGGTGTCATGC+CGG - chr5.2:14598489-14598508 MS.gene65298:intron 60.0%
ATTGCGGGGGGTTCCGTCTC+CGG + chr5.2:14594554-14594573 None:intergenic 65.0%
CGATTCCGTCGCCGGGGATT+AGG + chr5.2:14594582-14594601 None:intergenic 65.0%
GGGGCGGGGCATGTAGGTTA+CGG + chr5.2:14594533-14594552 None:intergenic 65.0%
GGGTGGTGCTTGTCCCTCCA+AGG + chr5.2:14599562-14599581 None:intergenic 65.0%
GTAACCTACATGCCCCGCCC+CGG - chr5.2:14594532-14594551 MS.gene65298:CDS 65.0%
TTACGGTACGGGGGTGGGTG+AGG + chr5.2:14594516-14594535 None:intergenic 65.0%
TTGGCGACTCCGATGGGTGG+TGG - chr5.2:14594754-14594773 MS.gene65298:intron 65.0%
! ACAGCGGCAGGCATTGCTGG+AGG - chr5.2:14598472-14598491 MS.gene65298:intron 65.0%
! GCAGGCATTGCTGGAGGCAC+TGG - chr5.2:14598478-14598497 MS.gene65298:intron 65.0%
! GGATTGGCGACTCCGATGGG+TGG - chr5.2:14594751-14594770 MS.gene65298:intron 65.0%
! GGTGGTGGCGCGTGGAGATA+AGG + chr5.2:14594495-14594514 None:intergenic 65.0%
!! GGAGGCACTGGTGTCATGCC+GGG - chr5.2:14598490-14598509 MS.gene65298:intron 65.0%
!! GGGGATGGGTTGGAGTCTGG+TGG - chr5.2:14599143-14599162 MS.gene65298:CDS 65.0%
TACATGCCCCGCCCCGGAGA+CGG - chr5.2:14594538-14594557 MS.gene65298:CDS 70.0%
TACGGGGGTGGGTGAGGTGG+TGG + chr5.2:14594510-14594529 None:intergenic 70.0%
TTGCGGGGGGTTCCGTCTCC+GGG + chr5.2:14594553-14594572 None:intergenic 70.0%
! AGAGGGCCGATTCCGTCGCC+GGG + chr5.2:14594589-14594608 None:intergenic 70.0%
! GAGAGGGCCGATTCCGTCGC+CGG + chr5.2:14594590-14594609 None:intergenic 70.0%
!! GGCACTGGTGTCATGCCGGG+AGG - chr5.2:14598493-14598512 MS.gene65298:intron 70.0%
CGGTACGGGGGTGGGTGAGG+TGG + chr5.2:14594513-14594532 None:intergenic 75.0%
GTCTCCGGGGCGGGGCATGT+AGG + chr5.2:14594539-14594558 None:intergenic 75.0%
TGCGGGGGGTTCCGTCTCCG+GGG + chr5.2:14594552-14594571 None:intergenic 75.0%
! GAGGGCCGATTCCGTCGCCG+GGG + chr5.2:14594588-14594607 None:intergenic 75.0%
! GTGGGTGAGGTGGTGGCGCG+TGG + chr5.2:14594503-14594522 None:intergenic 75.0%
! GGGGGGTTCCGTCTCCGGGG+CGG + chr5.2:14594549-14594568 None:intergenic 80.0%
! GGGGGTTCCGTCTCCGGGGC+GGG + chr5.2:14594548-14594567 None:intergenic 80.0%
! GGGGTTCCGTCTCCGGGGCG+GGG + chr5.2:14594547-14594566 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 14594457 14599619 14594457 ID=MS.gene65298
chr5.2 mRNA 14594457 14599619 14594457 ID=MS.gene65298.t1;Parent=MS.gene65298
chr5.2 exon 14599110 14599619 14599110 ID=MS.gene65298.t1.exon1;Parent=MS.gene65298.t1
chr5.2 CDS 14599110 14599619 14599110 ID=cds.MS.gene65298.t1;Parent=MS.gene65298.t1
chr5.2 exon 14596997 14597236 14596997 ID=MS.gene65298.t1.exon2;Parent=MS.gene65298.t1
chr5.2 CDS 14596997 14597236 14596997 ID=cds.MS.gene65298.t1;Parent=MS.gene65298.t1
chr5.2 exon 14595562 14595640 14595562 ID=MS.gene65298.t1.exon3;Parent=MS.gene65298.t1
chr5.2 CDS 14595562 14595640 14595562 ID=cds.MS.gene65298.t1;Parent=MS.gene65298.t1
chr5.2 exon 14594457 14594731 14594457 ID=MS.gene65298.t1.exon4;Parent=MS.gene65298.t1
chr5.2 CDS 14594457 14594731 14594457 ID=cds.MS.gene65298.t1;Parent=MS.gene65298.t1
Gene Sequence

>MS.gene65298

ATGGCGACGAGAAAATCCACAAACCTCCTCAAACACCTTATCTCCACGCGCCACCACCTCACCCACCCCCGTACCGTAACCTACATGCCCCGCCCCGGAGACGGAACCCCCCGCAATGTAACCCTAATCCCCGGCGACGGAATCGGCCCTCTCGTAACCGGCGCTGTTGAGCAAGTAATGGAAGCGATGCATGCGCCAGTGCACTTCGAGAAATTCGAAGTGCACGGCAATATGAAAGCGATTCCATCTGAAGTGATGGAATCGATTAAGAAGAATAAGGTCTGTTTGAAAGGTGGATTGGCGACTCCGATGGGTGGTGGTGTTAGTTCGCTTAATTTGCAGCTGAGGAAGGAGCTTGATCTTTATGCTTCGCTTGTCAGTTGCTTTAATCTGGAAGGATTGACTACTAGGCATGATAATGTTGATATTGTTGTTATTAGGGAGAATACTGAAGGGGAATATGCTGGTCTTGAACATGAGGTTGTTCCCGGTGTCGTTGAGAGTCTCAAGGTATTCAAATTATGATCAATTTATTATACAAATATTACATTGTGTGTGTTTTGTTAGTAATTTTATTTATTAAGTTAATTAATTAATGGAAGATACATTTGATGATCAAACTTACTAGCGAAAGACATATTCAATGACCAAACTATCACATTTGAATATTAATTTTGTAATCTTGATACAATCAAGATGGTGGAAACTCAAGTTGACGGGATATGATTAGGAATGACAACATTAGAGAGGGAGTTGGGGTAGCAAATGCTGGAGAGAAGATGTGGAAATTCGACTTAGGCGGTTTGGGTGTGTAGAGAGAAGACCTGTTGATTCTTTGGTAAGGAGAGTGGATAAGAGAACTTACTAGAGGGCAGAGGCAGAGGAAGACCTAGAGAACCATAAGAGAAATTGTTAAGAAAGATCTAGAGATTAATGAGTTATAGTGACGATACATCACACATACGAGGACTAACATGATTTTTTATCCCTTATTAACTCACGACAATAAACTTACAATCAGAATAATTTAGAAACGTTACAGTTAAGTGATTTTTCGGTTGTATTTTTGTTAATTCAAACTTGTTGTAATCAGTAATTCACTTGTAGAAATTGTGATAACGTGTGGAGTTTGTTTCTATGAGTACTCACTCATTGGCTGGGCTTTGAAATTTGAATCATTTCATGGCTAGGTTTGCTGAATTGAGTAGTGACTAGTTTGTAAGCATTGTAATATTTGATCTATTCATCTCACAAGAAAAAACTTGGATTGCTGGCTTTTAGATGAATTGGAAAGCAGTGATGTATAATTTGCGTGTTTATGGTGAAGAATCTTGAAGAATTGCTTGTACCTTTTGCATGGTAGATAACTCGGAATATACTTTGTATTTAACAGGTCGTTAGACTTATTTTGCGTCACAAGTTGTTAGACATATTTTGCATCGGAAATTTGTGGGGAAATTCCCATCTACAAATTAATTAGGAGGTTTAATTTCTTCGGTGAAATGGATTCGGGTTGCAAGTTTAGGATTTTTTTGTTCTCGAAAGCGGTGATAGAGAATGCTATTTGGTAATATGCGGGTTTATTTTACTTATATTTCCAAGTCCTTAGAAACTGGTGGCCTTAGCTTCTCAGATGATAAACCCGTATTGCATTCACTGGTAATATTCGAATTTGAATATAATACATTCATTCTTACGGAAATTTCCAATCATCTTTGGGATACTTGATGGAAATGCTAACTAAAAGAAAAGTAGTGGTGCATAGTAGTTATACTCCCTCCGTCCTAAATTATAAGCAAAAAAAACTCATTTTCTTTGTCCCAAATTATAAGCAAAAAAGACCAACTTTTATCATATTTAATTATGTTATTTCAAAAAATTATCTTTTCCAAAGGAAAATTAAATGCAAAGTGCATTCAATTTGCTTTCTCTTTCATTTTCTCAATAACCAATAACCAATGGAAATTGTTTTTACATCTTCCTATAAAACTTATTTCAAGGATAACACAAGAAACTATGTTGCAAACTACTATGTTTTAGTTTTCTTAATAAATGTGATTTTTTTTTTGCTTATAATATGGGACAGAGGGAGTATTAATTAAGAATATTAGTTTTTAATTTTTTTATTTCTTTTGTATGCATTGTGTTGTGTACTTGCTGCTCCACTGTTGATGTCCTTTAAAGGTTGTTTATTGTAATCATGCTCAGATATTTCCCGTTTCTTAGAGGACTATTCTTTAAATGTAGAGGTTTTATTCCTTTATATTTGCTGTATAGATAGATTTGTATTGTAATATTTAAATGTTATATATCTCATGATGTTAGCACCTTGACATTGTGACATGTGGGTTTTTGTTTGCACCTCATACTCAAATTTTGCTAGGTAATAACAAAGTTCTGTTCAGAGCGCATTGCTAAATATGCTTTCGAGTATGCGTATCTAAATAACAGAAAGAAGGTGACTGCTGTGCACAAAGCAAACATTATGAAGCTTGCAGATGGTTTATTCTTGGAATCTTGTCGAGAGGTTGCCACAAAGTATCCTGGAATCAAGTATAATGAAATTATTGTAGACAATTGTTGCATGCAGCTTGTTTCAAAGCCTGAGCAATTTGATGTCATGGTATGTATATTTATAATTTGACCCTGAATCCCAATTATTTATCCACTTTTGGCTGATATGTTTATGAGTCCAGCACTTGTTTAAACATTTTTTAAATAAAAAAATTTGGTGCTATTAGTTTGTTGGTTAAATAAGCAACTTTTTCAATTAAATTGTGACCCATGTGTCTGTTTATATTTCCTTTTATTACTTTGGAGAATTAGTGCCAACTGCCATGGGTTTCTCTGTTGTTTAATTTGTTGACTTCTGCCACAGAAATCACTGGATAAATGAGTAGCATTGTAATAAACTATAAACAATTATAGCCAAAGATAATTATTTGAGTCTTTACTTCTTTTGTATGAGATTTTCTATCGTTGGTTCAATCAAAAGGTTATTTTTGAAAGCAAATTAAACAGGAGTGGAGCTAGCCATTTGCTTATCTCTGGGGGTGGGGGCAATAACATAATGAAGGAAACTTTTTTGAGAGGATAACGAAGGAAACTTATTTCTCAAATAAACATATCAAACTTAATCAAAAATCAAAAGATTCTGTATATTTAATTCTTTTATATCATATGTAAATTAAATGAAATAAAAAAGAAATCATTCAATAGTGATTTTGAAAAGTTGAGTTGATAATTCTTTTATATCATCTGTTTTGTTTGTCTAGAAAAATTGAATTGCTTATGCTCTCTTTGTAGTTACTGTGGAGATTATAAGAATCAAAACAAGACAAATCAATCTAGCAATTAAGTTTTGTTTTACCTTTCTGTTTCTGCTAATTTGAGTAATTTCTGGTACAAATTGAGTGCTGCAAGTAATGTTTTAGTTATCAGATAAAGTCTTCTTTTTTGTTAGCCTTTGCTACCCAATAAGTATTCAACGAGCCACCCTGCACAAAAAGAAAATCTAGGAAGAAGGAATGAAACAGTATTTGTGTAGGACAGGGCCTTGGAAACAGTGATGGCATCATAATTTTTTTAACATAGGTTCCCTAGTTTAATCTAATTATATGAGAGGATATATGATAAATAAGTTATTAATTAACTTTTGTCATTTGAAAAGGTTGGATGTTGTATTTAATTAGGTTTTGATATGGCCATATTGTGCCAGTTCAACAGAAATAGATACTAGTTAGCTATCTCCTTTATCCCTCTGAGGAAGTATAACAAATGGATTTGTATTTGTAATAATGAATATAAAAGGGGTACCCTTCCCGCCTGTTCTCTTGGTGCCACTTGAAATTAAGAAAACATTGAGGAGTTTGTTGATTAACATGACGATTCTTTCTTGCTAGTAATTGATTGGTCTTTTTCCCAGTCATTTTGCTTTTGATTTTAAATTCAAAGTCATAAACACTATTTCTGCTTGCAGGTTACCCCCAATCTTTATGGAAATCTTGTTGCAAATACAGCGGCAGGCATTGCTGGAGGCACTGGTGTCATGCCGGGAGGTATAAATATTACTAATAACTATCGCTAATGTGTTGAAACTCTAGAGCTCTCATTTGATTATGCCGTGGCATTTTTCTTATCAAATAGTATCTTGCTTCCATATGGTCACTGTCGTTATGAGATGTGTGAGGGGGTGACTACCACTCAGAACTGTTGAGTCTAGATTTAGAGTGTATTAATCATGTTTGTCTAGTTCTTTCAATCAATTATTTCAGGAACATTTTTCATTCATTGAAAACTCTGCCAAAATATAGTGATTGATTAAATTAGAGATTGTATATTCAATGAAAACAAAAAATAGAGGTGGTATAGAAATCAAACTGGAAATTCATTTATCTTCCTCAACAGGTTGCAGTATGGAGGCAACAGCAGCTGTTGTGGGGTAATGGAGTTGTCAAATGGTAGTGACAACATAATTGGCATTTTACTCTTCTAAAGTGAACATTTCACTTTAGATGATAAAGTAAGAAATCTCAACCATTAATGAAAAATCAACCTTCAATATTTTAGCAGTGTATAGTAAGTAAACTATGAATGTGTTGAAATATCGACTATAAGTTTTCTCGTCAGTCGTTGAGGTCTTGTTGTACTCTAAAATAAGAGTTTGCTTTAGTTGAGTCAAATAACGGGGATGGGTTGGAGTCTGGTGGCGGCAGTGCTGTTTGTAGGATGGAGATTCTAATGAAAATATAGATAGGGCAGTTGGTCCTTTGTGTTGGACCTGTGGGCTGAATTTGTGGAAGGTTATCTAGATAGAAGTGATTGTTGAATAAAGCCACCTTAACCTTAAGCTTGAATATCTCGATTCATGGATGAAATGTCTTTGCAGGTAATGTTGGGGCTGACCATGCTGTATTTGAACAAGGTGCTTCCGCAGGAAATGTTGGTAAGGAAAAAGTAGTACAAGAAAAGAAAGCCAATCCTGTGGCACTTCTCCTTTCTTCCGCAATGATGCTCAGACATCTTCAGTTTCCTGTATTTGCTGAACGATTGGAAAGTGCTGTGAAACGAGTCATTTTAGAGGGTAAGTACAGGACAAAGGACCTTGGAGGGACAAGCACCACCCAAGAGGTTGTTGATGCAGTAATAGATGCATTGCAGTAA

Protein sequence

>MS.gene65298.t1

MATRKSTNLLKHLISTRHHLTHPRTVTYMPRPGDGTPRNVTLIPGDGIGPLVTGAVEQVMEAMHAPVHFEKFEVHGNMKAIPSEVMESIKKNKVCLKGGLATPMGGGVSSLNLQLRKELDLYASLVSCFNLEGLTTRHDNVDIVVIRENTEGEYAGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVATKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGKEKVVQEKKANPVALLLSSAMMLRHLQFPVFAERLESAVKRVILEGKYRTKDLGGTSTTQEVVDAVIDALQ