Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055904.t1 | XP_003590469.1 | 99.7 | 358 | 1 | 0 | 1 | 358 | 1 | 358 | 9.10E-202 | 712.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055904.t1 | Q945K7 | 81.7 | 372 | 54 | 1 | 1 | 358 | 3 | 374 | 4.9e-172 | 605.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055904.t1 | G7IAA3 | 99.7 | 358 | 1 | 0 | 1 | 358 | 1 | 358 | 6.6e-202 | 712.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055904 | MS.gene24619 | 0.946981 | 1.63E-105 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055904.t1 | MTR_1g064070 | 99.721 | 358 | 1 | 0 | 1 | 358 | 1 | 358 | 0.0 | 739 |
| MS.gene055904.t1 | MTR_3g101470 | 91.899 | 358 | 24 | 1 | 1 | 358 | 1 | 353 | 0.0 | 680 |
| MS.gene055904.t1 | MTR_8g074030 | 52.035 | 344 | 155 | 4 | 18 | 358 | 34 | 370 | 1.07e-119 | 350 |
| MS.gene055904.t1 | MTR_5g023740 | 48.634 | 366 | 174 | 4 | 2 | 358 | 6 | 366 | 6.44e-119 | 348 |
| MS.gene055904.t1 | MTR_8g074030 | 51.163 | 344 | 154 | 5 | 18 | 358 | 34 | 366 | 1.18e-115 | 340 |
| MS.gene055904.t1 | MTR_5g023740 | 48.087 | 366 | 172 | 5 | 2 | 358 | 6 | 362 | 6.38e-115 | 338 |
| MS.gene055904.t1 | MTR_5g023740 | 49.141 | 291 | 131 | 4 | 2 | 286 | 6 | 285 | 3.45e-96 | 288 |
| MS.gene055904.t1 | MTR_5g023740 | 50.545 | 275 | 125 | 3 | 2 | 270 | 6 | 275 | 7.01e-96 | 287 |
| MS.gene055904.t1 | MTR_5g023740 | 49.818 | 275 | 123 | 4 | 2 | 270 | 6 | 271 | 8.32e-92 | 276 |
| MS.gene055904.t1 | MTR_2g104610 | 31.953 | 338 | 200 | 10 | 29 | 341 | 42 | 374 | 1.23e-42 | 153 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055904.t1 | AT5G03290 | 81.720 | 372 | 54 | 1 | 1 | 358 | 3 | 374 | 0.0 | 625 |
| MS.gene055904.t1 | AT3G09810 | 83.478 | 345 | 57 | 0 | 14 | 358 | 30 | 374 | 0.0 | 609 |
| MS.gene055904.t1 | AT4G35260 | 50.581 | 344 | 162 | 2 | 18 | 358 | 28 | 366 | 1.04e-117 | 345 |
| MS.gene055904.t1 | AT2G17130 | 48.991 | 347 | 163 | 4 | 18 | 358 | 28 | 366 | 2.03e-112 | 332 |
| MS.gene055904.t1 | AT4G35650 | 49.419 | 344 | 166 | 3 | 18 | 358 | 29 | 367 | 3.22e-111 | 329 |
| MS.gene055904.t1 | AT2G17130 | 48.415 | 347 | 161 | 6 | 18 | 358 | 28 | 362 | 1.38e-108 | 322 |
| MS.gene055904.t1 | AT1G32480 | 42.534 | 221 | 114 | 4 | 34 | 252 | 4 | 213 | 1.87e-56 | 183 |
| MS.gene055904.t1 | AT5G14200 | 30.838 | 334 | 205 | 9 | 31 | 341 | 50 | 380 | 1.43e-42 | 152 |
| MS.gene055904.t1 | AT5G14200 | 30.838 | 334 | 205 | 9 | 31 | 341 | 50 | 380 | 1.94e-42 | 152 |
| MS.gene055904.t1 | AT1G31180 | 29.775 | 356 | 220 | 10 | 13 | 341 | 25 | 377 | 2.12e-42 | 152 |
| MS.gene055904.t1 | AT1G31180 | 29.775 | 356 | 220 | 10 | 13 | 341 | 40 | 392 | 3.68e-42 | 152 |
| MS.gene055904.t1 | AT1G80560 | 29.794 | 339 | 202 | 9 | 31 | 341 | 46 | 376 | 3.02e-40 | 147 |
| MS.gene055904.t1 | AT5G14200 | 25.974 | 231 | 147 | 7 | 31 | 239 | 50 | 278 | 6.09e-13 | 68.9 |
Find 93 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGACCTTGCTACAGCCTTAA+TGG | 0.178931 | 1.1:-48419147 | MS.gene055904:CDS |
| ACCTCTGTGCTGGCTTGATT+GGG | 0.204671 | 1.1:-48418465 | MS.gene055904:CDS |
| GACCTCTGTGCTGGCTTGAT+TGG | 0.229295 | 1.1:-48418466 | MS.gene055904:CDS |
| TTGACAGAATCGGCGATTTC+GGG | 0.246225 | 1.1:+48420567 | None:intergenic |
| TTTGACAGAATCGGCGATTT+CGG | 0.250060 | 1.1:+48420566 | None:intergenic |
| GTCAGAAAGCTCTTTGTTCT+AGG | 0.256069 | 1.1:+48419300 | None:intergenic |
| TTACACGTCAAGCAAGTATA+AGG | 0.294037 | 1.1:-48418927 | MS.gene055904:CDS |
| TGTCTCAATGTTGCGCCATT+TGG | 0.311641 | 1.1:-48413926 | MS.gene055904:CDS |
| CGGAATAAGGTTGGCTTGAA+AGG | 0.360215 | 1.1:-48419252 | MS.gene055904:CDS |
| CTCACCTTTCCAGCAATATC+AGG | 0.370328 | 1.1:+48418275 | None:intergenic |
| AGAATCGGTTAGGCGGAATA+AGG | 0.372075 | 1.1:-48419265 | MS.gene055904:CDS |
| TCTCTTTCTTCCATGTTCCT+TGG | 0.407655 | 1.1:+48418879 | None:intergenic |
| CTCTGTGCTGGCTTGATTGG+GGG | 0.437503 | 1.1:-48418463 | MS.gene055904:CDS |
| GGTTCAGCACCTGATATTGC+TGG | 0.442057 | 1.1:-48418284 | MS.gene055904:CDS |
| TTCAGCAATTGTGTTAAGAA+TGG | 0.446588 | 1.1:+48413870 | None:intergenic |
| ATGGCCACCCCTATCGGTAA+AGG | 0.450045 | 1.1:-48419225 | MS.gene055904:CDS |
| GGCGCGGATCGGAGTGGAAT+CGG | 0.453688 | 1.1:+48420617 | None:intergenic |
| CCTCTGTGCTGGCTTGATTG+GGG | 0.463943 | 1.1:-48418464 | MS.gene055904:CDS |
| CTGCTGATGCACAAATAGAA+TGG | 0.464162 | 1.1:-48419353 | MS.gene055904:CDS |
| CCATAGCTTGTGAAGAATCC+TGG | 0.468996 | 1.1:-48418538 | MS.gene055904:intron |
| TTGGTGATGCCTAATCTTTA+CGG | 0.469141 | 1.1:-48418502 | MS.gene055904:CDS |
| AATCGCCGATTCTGTCAAAC+AGG | 0.472954 | 1.1:-48420562 | MS.gene055904:intron |
| TCTGTGCTGGCTTGATTGGG+GGG | 0.474277 | 1.1:-48418462 | MS.gene055904:CDS |
| GACATGGGAAAGTTTAGAAT+CGG | 0.478701 | 1.1:-48419280 | MS.gene055904:CDS |
| TGGCCACCCCTATCGGTAAA+GGG | 0.479393 | 1.1:-48419224 | MS.gene055904:CDS |
| TGCTGATGCACAAATAGAAT+GGG | 0.483323 | 1.1:-48419352 | MS.gene055904:CDS |
| AACGATGCCCTTTACCGATA+GGG | 0.490915 | 1.1:+48419217 | None:intergenic |
| GGGAAAGTTTAGAATCGGTT+AGG | 0.495200 | 1.1:-48419275 | MS.gene055904:CDS |
| GGGCCAATGGCCACCCCTAT+CGG | 0.496960 | 1.1:-48419231 | MS.gene055904:CDS |
| AATACCGAAGGCGAGTATAG+TGG | 0.498637 | 1.1:-48419078 | MS.gene055904:CDS |
| TTACCGATAGGGGTGGCCAT+TGG | 0.498964 | 1.1:+48419228 | None:intergenic |
| GCACTTGCTGAGGCTGTACA+TGG | 0.499237 | 1.1:-48418305 | MS.gene055904:CDS |
| GAATGGGAAGAGCATTATGT+AGG | 0.499589 | 1.1:-48419336 | MS.gene055904:CDS |
| ACGAACCTGTTTGACAGAAT+CGG | 0.506762 | 1.1:+48420557 | None:intergenic |
| AAGTACCGAACTGCTGATCT+TGG | 0.507542 | 1.1:-48413844 | MS.gene055904:CDS |
| CTTTGTCATGGAGATCCAAA+TGG | 0.508562 | 1.1:+48413911 | None:intergenic |
| ACTTCCTCATACACTATCTC+AGG | 0.511480 | 1.1:+48418682 | None:intergenic |
| TCAGAAAGCTCTTTGTTCTA+GGG | 0.512067 | 1.1:+48419301 | None:intergenic |
| CTATTTGTGCATCAGCAGCT+TGG | 0.514272 | 1.1:+48419358 | None:intergenic |
| CATTGACAATTGCTGTATGA+TGG | 0.519185 | 1.1:-48418656 | MS.gene055904:intron |
| GTATAGTGGACTTGAACATC+AGG | 0.526249 | 1.1:-48419064 | MS.gene055904:intron |
| ATATCCTGAGATAGTGTATG+AGG | 0.527921 | 1.1:-48418686 | MS.gene055904:CDS |
| TGCAGCCTCAACATTGGTGA+GGG | 0.528347 | 1.1:-48418335 | MS.gene055904:intron |
| GGAATAAGGTTGGCTTGAAA+GGG | 0.532355 | 1.1:-48419251 | MS.gene055904:CDS |
| TTTCACTACGCCAAGGAACA+TGG | 0.535570 | 1.1:-48418889 | MS.gene055904:CDS |
| TACACGTCAAGCAAGTATAA+GGG | 0.538825 | 1.1:-48418926 | MS.gene055904:CDS |
| TCGGTTAGGCGGAATAAGGT+TGG | 0.541684 | 1.1:-48419261 | MS.gene055904:CDS |
| AACAAAGAGCTTTCTGACAT+GGG | 0.543341 | 1.1:-48419295 | MS.gene055904:CDS |
| ATAATCAGTGACCTCTGTGC+TGG | 0.544154 | 1.1:-48418475 | MS.gene055904:CDS |
| GAGCTCAGCAGCAAAGCTGT+TGG | 0.544179 | 1.1:+48413949 | None:intergenic |
| TTCGGGACCGATACCATCGC+CGG | 0.544895 | 1.1:+48420584 | None:intergenic |
| GAATCCGATCCGCTTTGTCA+TGG | 0.545293 | 1.1:+48413899 | None:intergenic |
| ATTATATCACCGTAAAGATT+AGG | 0.545467 | 1.1:+48418493 | None:intergenic |
| ATTCTTAACACAATTGCTGA+AGG | 0.547614 | 1.1:-48413868 | MS.gene055904:CDS |
| TCGGGACCGATACCATCGCC+GGG | 0.548928 | 1.1:+48420585 | None:intergenic |
| TACCGAACTGCTGATCTTGG+TGG | 0.549369 | 1.1:-48413841 | MS.gene055904:CDS |
| AAGTCCACTATACTCGCCTT+CGG | 0.550678 | 1.1:+48419074 | None:intergenic |
| GGGAAAAGAGTGGCGCGGAT+CGG | 0.552555 | 1.1:+48420606 | None:intergenic |
| AGCACCTGATATTGCTGGAA+AGG | 0.552746 | 1.1:-48418279 | MS.gene055904:intron |
| GAACAAAGAGCTTTCTGACA+TGG | 0.555879 | 1.1:-48419296 | MS.gene055904:CDS |
| TGCCACCAAGATCAGCAGTT+CGG | 0.556271 | 1.1:+48413839 | None:intergenic |
| CAGATCCTCAGAAGAACACT+CGG | 0.561691 | 1.1:-48420675 | MS.gene055904:CDS |
| GTCTGTGGTTTGCGAAATAG+CGG | 0.565447 | 1.1:+48420649 | None:intergenic |
| AACATTATGCAAAAGACTGA+TGG | 0.584659 | 1.1:-48418835 | MS.gene055904:CDS |
| GAACGATGCCCTTTACCGAT+AGG | 0.585920 | 1.1:+48419216 | None:intergenic |
| AATGGGAAGAGCATTATGTA+GGG | 0.586731 | 1.1:-48419335 | MS.gene055904:CDS |
| GGCTTCCGAGTGTTCTTCTG+AGG | 0.587678 | 1.1:+48420670 | None:intergenic |
| TTGCAGCCTCAACATTGGTG+AGG | 0.595052 | 1.1:-48418336 | MS.gene055904:intron |
| ATCTCCATGACAAAGCGGAT+CGG | 0.597944 | 1.1:-48413903 | MS.gene055904:CDS |
| GGGAGGTATTGCACTTGCTG+AGG | 0.602788 | 1.1:-48418315 | MS.gene055904:CDS |
| GGTTGGCTTGAAAGGGCCAA+TGG | 0.604612 | 1.1:-48419244 | MS.gene055904:CDS |
| AGCCTCAACATTGGTGAGGG+AGG | 0.610365 | 1.1:-48418332 | MS.gene055904:CDS |
| ACGATGCCCTTTACCGATAG+GGG | 0.614779 | 1.1:+48419218 | None:intergenic |
| TACCTCCCTCACCAATGTTG+AGG | 0.618003 | 1.1:+48418330 | None:intergenic |
| TTCTTAACACAATTGCTGAA+GGG | 0.618710 | 1.1:-48413867 | MS.gene055904:CDS |
| GCTGTAGCAAGGTCGAACAT+TGG | 0.627515 | 1.1:+48419155 | None:intergenic |
| GGAGTGGAATCGGAAGAGAA+AGG | 0.628474 | 1.1:+48420627 | None:intergenic |
| TTTGGGTTACAGGTTGTGAG+GGG | 0.632209 | 1.1:-48418973 | MS.gene055904:intron |
| AAAGTTTAGAATCGGTTAGG+CGG | 0.637872 | 1.1:-48419272 | MS.gene055904:CDS |
| AAGAGTGGCGCGGATCGGAG+TGG | 0.641212 | 1.1:+48420611 | None:intergenic |
| TATCCATTAAGGCTGTAGCA+AGG | 0.643076 | 1.1:+48419144 | None:intergenic |
| ACCATCGCCGGGGAAAAGAG+TGG | 0.644691 | 1.1:+48420596 | None:intergenic |
| CGCCGGGGAAAAGAGTGGCG+CGG | 0.660910 | 1.1:+48420601 | None:intergenic |
| ATGCCCTTTACCGATAGGGG+TGG | 0.670871 | 1.1:+48419221 | None:intergenic |
| ACAATCCGTGAAAATACCGA+AGG | 0.679482 | 1.1:-48419090 | MS.gene055904:CDS |
| GATATTTCTCTGCAACCTCG+CGG | 0.680379 | 1.1:+48418704 | None:intergenic |
| TGGTGGCAGTTCAAAGACAA+CGG | 0.682693 | 1.1:-48413824 | MS.gene055904:CDS |
| ACGTCAAGCAAGTATAAGGG+TGG | 0.699254 | 1.1:-48418923 | MS.gene055904:CDS |
| TTTGGATCTCCATGACAAAG+CGG | 0.721494 | 1.1:-48413908 | MS.gene055904:CDS |
| TTATGTTTAGTGTTGCCGCG+AGG | 0.727035 | 1.1:-48418719 | MS.gene055904:intron |
| AATCGGAAGAGAAAGGTCTG+TGG | 0.734444 | 1.1:+48420634 | None:intergenic |
| CGGGACCGATACCATCGCCG+GGG | 0.744899 | 1.1:+48420586 | None:intergenic |
| CCCCAATCAAGCCAGCACAG+AGG | 0.762091 | 1.1:+48418464 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 48413792 | 48420706 | 48413792 | ID=MS.gene055904 |
| chr1.1 | mRNA | 48413792 | 48420706 | 48413792 | ID=MS.gene055904.t1;Parent=MS.gene055904 |
| chr1.1 | exon | 48420563 | 48420706 | 48420563 | ID=MS.gene055904.t1.exon1;Parent=MS.gene055904.t1 |
| chr1.1 | CDS | 48420563 | 48420706 | 48420563 | ID=cds.MS.gene055904.t1;Parent=MS.gene055904.t1 |
| chr1.1 | exon | 48419065 | 48419385 | 48419065 | ID=MS.gene055904.t1.exon2;Parent=MS.gene055904.t1 |
| chr1.1 | CDS | 48419065 | 48419385 | 48419065 | ID=cds.MS.gene055904.t1;Parent=MS.gene055904.t1 |
| chr1.1 | exon | 48418822 | 48418983 | 48418822 | ID=MS.gene055904.t1.exon3;Parent=MS.gene055904.t1 |
| chr1.1 | CDS | 48418822 | 48418983 | 48418822 | ID=cds.MS.gene055904.t1;Parent=MS.gene055904.t1 |
| chr1.1 | exon | 48418657 | 48418731 | 48418657 | ID=MS.gene055904.t1.exon4;Parent=MS.gene055904.t1 |
| chr1.1 | CDS | 48418657 | 48418731 | 48418657 | ID=cds.MS.gene055904.t1;Parent=MS.gene055904.t1 |
| chr1.1 | exon | 48418445 | 48418554 | 48418445 | ID=MS.gene055904.t1.exon5;Parent=MS.gene055904.t1 |
| chr1.1 | CDS | 48418445 | 48418554 | 48418445 | ID=cds.MS.gene055904.t1;Parent=MS.gene055904.t1 |
| chr1.1 | exon | 48418280 | 48418352 | 48418280 | ID=MS.gene055904.t1.exon6;Parent=MS.gene055904.t1 |
| chr1.1 | CDS | 48418280 | 48418352 | 48418280 | ID=cds.MS.gene055904.t1;Parent=MS.gene055904.t1 |
| chr1.1 | exon | 48413792 | 48413983 | 48413792 | ID=MS.gene055904.t1.exon7;Parent=MS.gene055904.t1 |
| chr1.1 | CDS | 48413792 | 48413983 | 48413792 | ID=cds.MS.gene055904.t1;Parent=MS.gene055904.t1 |
| Gene Sequence |
| Protein sequence |