Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38729.t1 | GAU44317.1 | 97.8 | 358 | 8 | 0 | 1 | 358 | 1 | 358 | 2.10E-198 | 701.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38729.t1 | Q945K7 | 84.7 | 372 | 43 | 1 | 1 | 358 | 3 | 374 | 7.9e-178 | 624.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38729.t1 | A0A2Z6PIA6 | 97.8 | 358 | 8 | 0 | 1 | 358 | 1 | 358 | 1.5e-198 | 701.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38729.t1 | MTR_3g101470 | 96.927 | 358 | 6 | 1 | 1 | 358 | 1 | 353 | 0.0 | 715 |
| MS.gene38729.t1 | MTR_1g064070 | 93.575 | 358 | 23 | 0 | 1 | 358 | 1 | 358 | 0.0 | 701 |
| MS.gene38729.t1 | MTR_8g074030 | 48.774 | 367 | 170 | 4 | 5 | 358 | 9 | 370 | 1.53e-118 | 348 |
| MS.gene38729.t1 | MTR_5g023740 | 47.397 | 365 | 178 | 4 | 3 | 358 | 7 | 366 | 2.06e-115 | 340 |
| MS.gene38729.t1 | MTR_8g074030 | 48.229 | 367 | 168 | 5 | 5 | 358 | 9 | 366 | 1.21e-114 | 337 |
| MS.gene38729.t1 | MTR_5g023740 | 46.849 | 365 | 176 | 5 | 3 | 358 | 7 | 362 | 2.82e-111 | 329 |
| MS.gene38729.t1 | MTR_5g023740 | 47.931 | 290 | 134 | 4 | 3 | 286 | 7 | 285 | 3.80e-93 | 280 |
| MS.gene38729.t1 | MTR_5g023740 | 49.270 | 274 | 128 | 3 | 3 | 270 | 7 | 275 | 1.11e-92 | 279 |
| MS.gene38729.t1 | MTR_5g023740 | 48.540 | 274 | 126 | 4 | 3 | 270 | 7 | 271 | 7.08e-89 | 269 |
| MS.gene38729.t1 | MTR_2g104610 | 31.105 | 344 | 207 | 10 | 23 | 341 | 36 | 374 | 7.54e-43 | 153 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38729.t1 | AT5G03290 | 91.124 | 338 | 30 | 0 | 21 | 358 | 37 | 374 | 0.0 | 644 |
| MS.gene38729.t1 | AT3G09810 | 83.768 | 345 | 56 | 0 | 14 | 358 | 30 | 374 | 0.0 | 613 |
| MS.gene38729.t1 | AT4G35260 | 48.889 | 360 | 170 | 4 | 2 | 358 | 18 | 366 | 2.19e-116 | 342 |
| MS.gene38729.t1 | AT2G17130 | 46.832 | 363 | 173 | 6 | 2 | 358 | 18 | 366 | 3.20e-112 | 332 |
| MS.gene38729.t1 | AT4G35650 | 47.838 | 370 | 170 | 6 | 7 | 358 | 3 | 367 | 2.67e-111 | 329 |
| MS.gene38729.t1 | AT2G17130 | 46.281 | 363 | 171 | 7 | 2 | 358 | 18 | 362 | 2.92e-108 | 321 |
| MS.gene38729.t1 | AT1G32480 | 42.081 | 221 | 115 | 4 | 34 | 252 | 4 | 213 | 2.90e-56 | 183 |
| MS.gene38729.t1 | AT1G31180 | 30.636 | 346 | 210 | 10 | 23 | 341 | 35 | 377 | 2.46e-43 | 155 |
| MS.gene38729.t1 | AT1G31180 | 30.636 | 346 | 210 | 10 | 23 | 341 | 50 | 392 | 5.23e-43 | 154 |
| MS.gene38729.t1 | AT5G14200 | 31.138 | 334 | 204 | 9 | 31 | 341 | 50 | 380 | 1.30e-42 | 152 |
| MS.gene38729.t1 | AT5G14200 | 31.138 | 334 | 204 | 9 | 31 | 341 | 50 | 380 | 1.64e-42 | 152 |
| MS.gene38729.t1 | AT1G80560 | 30.383 | 339 | 200 | 9 | 31 | 341 | 46 | 376 | 1.15e-40 | 147 |
| MS.gene38729.t1 | AT5G14200 | 26.840 | 231 | 145 | 7 | 31 | 239 | 50 | 278 | 3.10e-13 | 70.1 |
Find 84 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAAGAAAGCTCTGTGTTCT+AGG | 0.277010 | 3.3:-84058066 | None:intergenic |
| GCTGGCTTGATTGGAGGATT+AGG | 0.316432 | 3.3:+84058921 | MS.gene38729:CDS |
| CGACCTTGTTACAGCCTTCC+TGG | 0.319613 | 3.3:+84058219 | MS.gene38729:CDS |
| AGTGACCTGTTTGACGGATT+CGG | 0.336125 | 3.3:-84056902 | None:intergenic |
| TGTTACCATGTTGCGCCATT+TGG | 0.339580 | 3.3:+84059344 | MS.gene38729:CDS |
| GGGCCAATGGCTACTCCTAT+TGG | 0.346491 | 3.3:+84058135 | MS.gene38729:CDS |
| TAGAATCGGTAAGAAGAAAC+AGG | 0.350254 | 3.3:+84058100 | MS.gene38729:CDS |
| GACCTTTGTGCTGGCTTGAT+TGG | 0.351034 | 3.3:+84058912 | MS.gene38729:CDS |
| CTCACCTTCCCAGCAATATC+AGG | 0.370076 | 3.3:-84059093 | None:intergenic |
| GGCTCAGCACCTGATATTGC+TGG | 0.370773 | 3.3:+84059084 | MS.gene38729:CDS |
| TTGGTGATGCCTAACCTTTA+TGG | 0.384596 | 3.3:+84058876 | MS.gene38729:CDS |
| TAATGCTCTTCCCATTCAAT+TGG | 0.399010 | 3.3:-84058024 | None:intergenic |
| GAATACTATCTGCTTTATCA+TGG | 0.416549 | 3.3:-84059371 | None:intergenic |
| GAACACAGAGCTTTCTTACA+TGG | 0.419020 | 3.3:+84058070 | MS.gene38729:CDS |
| CTTTGTGCTGGCTTGATTGG+AGG | 0.426373 | 3.3:+84058915 | MS.gene38729:CDS |
| CTGCTGAAGTTCCAATTGAA+TGG | 0.426984 | 3.3:+84058013 | MS.gene38729:CDS |
| CGCTGATTATATCACCATAA+AGG | 0.430909 | 3.3:-84058890 | None:intergenic |
| ATGGCTACTCCTATTGGAAA+AGG | 0.433692 | 3.3:+84058141 | MS.gene38729:CDS |
| TTTGACGGATTCGGCGATCT+CGG | 0.461264 | 3.3:-84056893 | None:intergenic |
| ACTTCCTCATATACTATCTC+TGG | 0.461486 | 3.3:-84058690 | None:intergenic |
| GATCGCCGAATCCGTCAAAC+AGG | 0.465664 | 3.3:+84056897 | MS.gene38729:CDS |
| TGCTGAAGTTCCAATTGAAT+GGG | 0.465872 | 3.3:+84058014 | MS.gene38729:CDS |
| AGAAACAGGGTTGGCTTGAA+AGG | 0.465983 | 3.3:+84058114 | MS.gene38729:CDS |
| AAGAGAAGTGACCTGTTTGA+CGG | 0.467875 | 3.3:-84056908 | None:intergenic |
| TACATGGGAAAGTTTAGAAT+CGG | 0.469643 | 3.3:+84058086 | MS.gene38729:CDS |
| CAATTGGAACTTCAGCAGCT+TGG | 0.477455 | 3.3:-84058008 | None:intergenic |
| CAGATACTTCGACGAACTCT+CGG | 0.482540 | 3.3:+84056784 | MS.gene38729:CDS |
| TCTCTCTCTTCCATGTGCCT+TGG | 0.491167 | 3.3:-84058487 | None:intergenic |
| ATAATCAGCGACCTTTGTGC+TGG | 0.491910 | 3.3:+84058903 | MS.gene38729:CDS |
| TTGACGGATTCGGCGATCTC+GGG | 0.494209 | 3.3:-84056892 | None:intergenic |
| TCCCTTCTGCAATTGTGTTG+AGG | 0.495446 | 3.3:-84059404 | None:intergenic |
| ATATCCAGAGATAGTATATG+AGG | 0.495498 | 3.3:+84058686 | MS.gene38729:CDS |
| AAGTACCGAACTGCTGATCT+TGG | 0.507542 | 3.3:+84059426 | MS.gene38729:CDS |
| GAGGATTAGGCTTGACACCC+AGG | 0.514136 | 3.3:+84058934 | MS.gene38729:CDS |
| GGCACGAATCGGAGTGGTGG+AGG | 0.523029 | 3.3:-84056842 | None:intergenic |
| CTCGGGACCAATACCATCAC+CGG | 0.527524 | 3.3:-84056875 | None:intergenic |
| TGGCTACTCCTATTGGAAAA+GGG | 0.528777 | 3.3:+84058142 | MS.gene38729:CDS |
| GGGAAAAGAGTGGCACGAAT+CGG | 0.530220 | 3.3:-84056853 | None:intergenic |
| GCACTTGCTGAGGCTGTACA+TGG | 0.533721 | 3.3:+84059063 | MS.gene38729:CDS |
| CTTTATCATGGAGATCCAAA+TGG | 0.536914 | 3.3:-84059359 | None:intergenic |
| GTGGAGGAAGAGAAGGACCT+AGG | 0.536981 | 3.3:-84056826 | None:intergenic |
| TTTCACTATGCCAAGGCACA+TGG | 0.540596 | 3.3:+84058477 | MS.gene38729:CDS |
| CGGAGTGGTGGAGGAAGAGA+AGG | 0.541340 | 3.3:-84056833 | None:intergenic |
| TAAGAAAGCTCTGTGTTCTA+GGG | 0.543527 | 3.3:-84058065 | None:intergenic |
| TACCGAACTGCTGATCTTGG+TGG | 0.549369 | 3.3:+84059429 | MS.gene38729:CDS |
| GAAACAGGGTTGGCTTGAAA+GGG | 0.549689 | 3.3:+84058115 | MS.gene38729:CDS |
| TTCTGCAATTGTGTTGAGGA+TGG | 0.552934 | 3.3:-84059400 | None:intergenic |
| AGCTGCAACATTGGCGAGGG+AGG | 0.553258 | 3.3:+84059036 | MS.gene38729:intron |
| AGCACCTGATATTGCTGGGA+AGG | 0.553390 | 3.3:+84059089 | MS.gene38729:CDS |
| TGCCACCAAGATCAGCAGTT+CGG | 0.556271 | 3.3:-84059431 | None:intergenic |
| GTACAGTGGACTTGAACATC+AGG | 0.556840 | 3.3:+84058302 | MS.gene38729:CDS |
| CATTGACAATTGCTGCATGA+TGG | 0.561036 | 3.3:+84058716 | MS.gene38729:CDS |
| ATTATATCACCATAAAGGTT+AGG | 0.563728 | 3.3:-84058885 | None:intergenic |
| TTTGGGTTATAGGTTGTGAG+GGG | 0.565156 | 3.3:+84058393 | MS.gene38729:intron |
| TCCAGCTGCAACATTGGCGA+GGG | 0.568702 | 3.3:+84059033 | MS.gene38729:intron |
| TTTCCAATAGGAGTAGCCAT+TGG | 0.572387 | 3.3:-84058138 | None:intergenic |
| AACACAGAGCTTTCTTACAT+GGG | 0.574926 | 3.3:+84058071 | MS.gene38729:CDS |
| GAACTCAACAGCAAAGCAGT+TGG | 0.576627 | 3.3:-84059321 | None:intergenic |
| ATCCTCAACACAATTGCAGA+AGG | 0.580671 | 3.3:+84059402 | MS.gene38729:CDS |
| GCTCAGCACCTGATATTGCT+GGG | 0.581328 | 3.3:+84059085 | MS.gene38729:CDS |
| TCGGTAAGAAGAAACAGGGT+TGG | 0.583355 | 3.3:+84058105 | MS.gene38729:CDS |
| ACCTAGGGTTTGACAGATAG+CGG | 0.587539 | 3.3:-84056810 | None:intergenic |
| AGTGGCACGAATCGGAGTGG+TGG | 0.588339 | 3.3:-84056845 | None:intergenic |
| TTCCAGCTGCAACATTGGCG+AGG | 0.595214 | 3.3:+84059032 | MS.gene38729:intron |
| GGTTGGCTTGAAAGGGCCAA+TGG | 0.602286 | 3.3:+84058122 | MS.gene38729:CDS |
| GGGAGGTATTGCACTTGCTG+AGG | 0.604265 | 3.3:+84059053 | MS.gene38729:CDS |
| GCCGCTATCTGTCAAACCCT+AGG | 0.605814 | 3.3:+84056809 | MS.gene38729:CDS |
| CTGTGTTCTAGGGTCAATTG+TGG | 0.611038 | 3.3:-84058055 | None:intergenic |
| TCGGGACCAATACCATCACC+GGG | 0.615254 | 3.3:-84056874 | None:intergenic |
| TGGAGGAAGAGAAGGACCTA+GGG | 0.615545 | 3.3:-84056825 | None:intergenic |
| GAGATCCAAATGGCGCAACA+TGG | 0.630253 | 3.3:-84059349 | None:intergenic |
| AACATTATGCAAAAGACTGA+CGG | 0.632176 | 3.3:+84058531 | MS.gene38729:CDS |
| AATGGGAAGAGCATTACGTA+GGG | 0.633880 | 3.3:+84058031 | MS.gene38729:CDS |
| TAGCCAGGAAGGCTGTAACA+AGG | 0.645729 | 3.3:-84058222 | None:intergenic |
| AATACAGAAGGCGAGTACAG+TGG | 0.649635 | 3.3:+84058288 | MS.gene38729:CDS |
| ACAATCCGTGAAAATACAGA+AGG | 0.651487 | 3.3:+84058276 | MS.gene38729:CDS |
| GAATGGGAAGAGCATTACGT+AGG | 0.653825 | 3.3:+84058030 | MS.gene38729:CDS |
| ACCATCACCGGGGAAAAGAG+TGG | 0.655812 | 3.3:-84056863 | None:intergenic |
| ACGTCAAGCAAGTTTACGAG+TGG | 0.657438 | 3.3:+84058443 | MS.gene38729:CDS |
| TCCTCAACACAATTGCAGAA+GGG | 0.663199 | 3.3:+84059403 | MS.gene38729:CDS |
| AGAATCGGTAAGAAGAAACA+GGG | 0.666965 | 3.3:+84058101 | MS.gene38729:CDS |
| AAGAGTGGCACGAATCGGAG+TGG | 0.687099 | 3.3:-84056848 | None:intergenic |
| CTCCAATCAAGCCAGCACAA+AGG | 0.693100 | 3.3:-84058914 | None:intergenic |
| CGGGACCAATACCATCACCG+GGG | 0.794777 | 3.3:-84056873 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTATAAAATTAAATTT+GGG | - | chr3.3:84057040-84057059 | None:intergenic | 0.0% |
| !! | TATAATTATAAAATTAAATT+TGG | - | chr3.3:84057041-84057060 | None:intergenic | 0.0% |
| !! | TAAAAATAATTCAAAATAGA+CGG | - | chr3.3:84058642-84058661 | None:intergenic | 10.0% |
| !! | AACAAGTGAAATTTAATTAA+AGG | - | chr3.3:84059270-84059289 | None:intergenic | 15.0% |
| !!! | TTAATGTATTTAGCATTTTT+GGG | + | chr3.3:84058376-84058395 | MS.gene38729:intron | 15.0% |
| !!! | TTTAATGTATTTAGCATTTT+TGG | + | chr3.3:84058375-84058394 | MS.gene38729:intron | 15.0% |
| !!! | TTTGTTTTGTTTTGAATTTT+GGG | + | chr3.3:84058960-84058979 | MS.gene38729:intron | 15.0% |
| !!! | TTTTGTTTTGTTTTGAATTT+TGG | + | chr3.3:84058959-84058978 | MS.gene38729:intron | 15.0% |
| !!! | TTTTTAAAACTGATACAAAT+GGG | + | chr3.3:84057166-84057185 | MS.gene38729:intron | 15.0% |
| !!! | TTTTTACTATTGCTATAATT+AGG | + | chr3.3:84057981-84058000 | MS.gene38729:intron | 15.0% |
| !!! | TTTTTTAAAACTGATACAAA+TGG | + | chr3.3:84057165-84057184 | MS.gene38729:intron | 15.0% |
| !! | TAAATTTGGGAAAACATATT+TGG | - | chr3.3:84057027-84057046 | None:intergenic | 20.0% |
| !!! | ACAAGCATAAAGTTTTAAAA+CGG | - | chr3.3:84059149-84059168 | None:intergenic | 20.0% |
| !!! | GTTTTAAAACGGATAATATA+TGG | - | chr3.3:84059138-84059157 | None:intergenic | 20.0% |
| ! | AAAATGAACCAATATACTGA+TGG | - | chr3.3:84057776-84057795 | None:intergenic | 25.0% |
| ! | AAATAAGATAACAGCAAACA+AGG | - | chr3.3:84057082-84057101 | None:intergenic | 25.0% |
| ! | AAATGAACCAATATACTGAT+GGG | - | chr3.3:84057775-84057794 | None:intergenic | 25.0% |
| ! | ACATTAAATTGATCAGAACT+TGG | - | chr3.3:84058363-84058382 | None:intergenic | 25.0% |
| ! | ATTATATCACCATAAAGGTT+AGG | - | chr3.3:84058888-84058907 | None:intergenic | 25.0% |
| ! | CAAAACAAAACAAAAAACCT+GGG | - | chr3.3:84058954-84058973 | None:intergenic | 25.0% |
| ! | TATAAGCTCAAGTTCAAATT+AGG | - | chr3.3:84057197-84057216 | None:intergenic | 25.0% |
| ! | TCAAAACAAAACAAAAAACC+TGG | - | chr3.3:84058955-84058974 | None:intergenic | 25.0% |
| !! | ATTGAGACACAGTATTTTAT+AGG | - | chr3.3:84058591-84058610 | None:intergenic | 25.0% |
| !! | TAAGTTCTTTTCTTAGAGTA+AGG | - | chr3.3:84058182-84058201 | None:intergenic | 25.0% |
| !!! | AAACTTTATGCTTGTTTTCA+TGG | + | chr3.3:84059154-84059173 | MS.gene38729:intron | 25.0% |
| !!! | ATTTAGCATTTTTGGGTTAT+AGG | + | chr3.3:84058383-84058402 | MS.gene38729:intron | 25.0% |
| !!! | TGCTTTGTTTGTTTCTTATT+GGG | + | chr3.3:84057898-84057917 | MS.gene38729:intron | 25.0% |
| !!! | TTGCTTTGTTTGTTTCTTAT+TGG | + | chr3.3:84057897-84057916 | MS.gene38729:intron | 25.0% |
| AAATGTACTGTAATCATCCA+TGG | + | chr3.3:84057256-84057275 | MS.gene38729:intron | 30.0% | |
| AACATTATGCAAAAGACTGA+CGG | + | chr3.3:84058531-84058550 | MS.gene38729:CDS | 30.0% | |
| AAGTTTCTTAGTTCATCTGA+AGG | - | chr3.3:84059220-84059239 | None:intergenic | 30.0% | |
| ATATCCAGAGATAGTATATG+AGG | + | chr3.3:84058686-84058705 | MS.gene38729:CDS | 30.0% | |
| ATGGATGATTACAGTACATT+TGG | - | chr3.3:84057257-84057276 | None:intergenic | 30.0% | |
| CAAACAAAGCAAGAGATATA+AGG | - | chr3.3:84057889-84057908 | None:intergenic | 30.0% | |
| CTAAGAGATTAAAGGATTGA+AGG | - | chr3.3:84057710-84057729 | None:intergenic | 30.0% | |
| GAATACTATCTGCTTTATCA+TGG | - | chr3.3:84059374-84059393 | None:intergenic | 30.0% | |
| TCTTTCTTTGTCAATTGTCA+TGG | + | chr3.3:84057801-84057820 | MS.gene38729:intron | 30.0% | |
| ! | TACATGGGAAAGTTTAGAAT+CGG | + | chr3.3:84058086-84058105 | MS.gene38729:CDS | 30.0% |
| ! | TTGCAATTGACTTAAACCTT+TGG | + | chr3.3:84057108-84057127 | MS.gene38729:intron | 30.0% |
| !! | AAATTTCACTTGTTTTCCTG+TGG | + | chr3.3:84059276-84059295 | MS.gene38729:intron | 30.0% |
| !! | TTAACTTGATGAGTTGATGT+AGG | + | chr3.3:84058748-84058767 | MS.gene38729:intron | 30.0% |
| AAACCTATGAACATAACGAC+AGG | - | chr3.3:84057231-84057250 | None:intergenic | 35.0% | |
| AACACAGAGCTTTCTTACAT+GGG | + | chr3.3:84058071-84058090 | MS.gene38729:CDS | 35.0% | |
| ACAATCCGTGAAAATACAGA+AGG | + | chr3.3:84058276-84058295 | MS.gene38729:CDS | 35.0% | |
| ACTTCCTCATATACTATCTC+TGG | - | chr3.3:84058693-84058712 | None:intergenic | 35.0% | |
| AGAATCGGTAAGAAGAAACA+GGG | + | chr3.3:84058101-84058120 | MS.gene38729:CDS | 35.0% | |
| AGTTAGGTCTGTTTGGTTAA+TGG | + | chr3.3:84057324-84057343 | MS.gene38729:intron | 35.0% | |
| ATGGTTCAAAATACAGCATC+TGG | + | chr3.3:84057275-84057294 | MS.gene38729:intron | 35.0% | |
| ATTGAAGGAGTAAATGTCCA+GGG | - | chr3.3:84057695-84057714 | None:intergenic | 35.0% | |
| CAAATTCTGCATAAAACCAC+AGG | - | chr3.3:84059295-84059314 | None:intergenic | 35.0% | |
| CCAACGAAAGAAAACAGAAT+GGG | - | chr3.3:84057749-84057768 | None:intergenic | 35.0% | |
| CTTTATCATGGAGATCCAAA+TGG | - | chr3.3:84059362-84059381 | None:intergenic | 35.0% | |
| GATGATTACAGTACATTTGG+AGG | - | chr3.3:84057254-84057273 | None:intergenic | 35.0% | |
| GATTCTATAGTTTATGTGCG+AGG | + | chr3.3:84057554-84057573 | MS.gene38729:intron | 35.0% | |
| TAAGAAAGCTCTGTGTTCTA+GGG | - | chr3.3:84058068-84058087 | None:intergenic | 35.0% | |
| TAATGCTCTTCCCATTCAAT+TGG | - | chr3.3:84058027-84058046 | None:intergenic | 35.0% | |
| TAGAATCGGTAAGAAGAAAC+AGG | + | chr3.3:84058100-84058119 | MS.gene38729:CDS | 35.0% | |
| TGCTGAAGTTCCAATTGAAT+GGG | + | chr3.3:84058014-84058033 | MS.gene38729:CDS | 35.0% | |
| TGGTTGTGCTAAGAGATTAA+AGG | - | chr3.3:84057718-84057737 | None:intergenic | 35.0% | |
| TTTGTCAATTGTCATGGATG+TGG | + | chr3.3:84057807-84057826 | MS.gene38729:intron | 35.0% | |
| ! | ACCAATACATCAAAAAGTGC+AGG | - | chr3.3:84058861-84058880 | None:intergenic | 35.0% |
| ! | CCATTCTGTTTTCTTTCGTT+GGG | + | chr3.3:84057747-84057766 | MS.gene38729:intron | 35.0% |
| ! | CGCTGATTATATCACCATAA+AGG | - | chr3.3:84058893-84058912 | None:intergenic | 35.0% |
| ! | GTCAGTCTTTTGCATAATGT+TGG | - | chr3.3:84058532-84058551 | None:intergenic | 35.0% |
| ! | TTAGTATTTTCTCCATTGCC+AGG | + | chr3.3:84057662-84057681 | MS.gene38729:intron | 35.0% |
| !! | AGATGCTGTATTTTGAACCA+TGG | - | chr3.3:84057276-84057295 | None:intergenic | 35.0% |
| !! | GATATTTTTCAGCAACCTCA+CGG | - | chr3.3:84058671-84058690 | None:intergenic | 35.0% |
| !! | TCCTGCACTTTTTGATGTAT+TGG | + | chr3.3:84058857-84058876 | MS.gene38729:CDS | 35.0% |
| !!! | CTGTGGTTTTATGCAGAATT+TGG | + | chr3.3:84059293-84059312 | MS.gene38729:intron | 35.0% |
| !!! | GACACTAGTTTTATCTCCAA+AGG | - | chr3.3:84057127-84057146 | None:intergenic | 35.0% |
| !!! | TTATTTTTAGTGTTGCCGTG+AGG | + | chr3.3:84058653-84058672 | MS.gene38729:intron | 35.0% |
| !!! | TTTTGGGTTATAGGTTGTGA+GGG | + | chr3.3:84058392-84058411 | MS.gene38729:intron | 35.0% |
| !!! | TTTTTGGGTTATAGGTTGTG+AGG | + | chr3.3:84058391-84058410 | MS.gene38729:intron | 35.0% |
| AAAAAAAGTAAGAACCCCCC+CGG | - | chr3.3:84057602-84057621 | None:intergenic | 40.0% | |
| AAGAGAAGTGACCTGTTTGA+CGG | - | chr3.3:84056911-84056930 | None:intergenic | 40.0% | |
| AATACAGCATCTGGTGATAG+TGG | + | chr3.3:84057284-84057303 | MS.gene38729:intron | 40.0% | |
| AATCCTAGGGTATGTTTGGA+TGG | - | chr3.3:84057517-84057536 | None:intergenic | 40.0% | |
| AATGGAGGAGAGGATTTAGA+AGG | + | chr3.3:84057342-84057361 | MS.gene38729:intron | 40.0% | |
| ACGAGTAAGTTAGGTCTGTT+TGG | + | chr3.3:84057317-84057336 | MS.gene38729:intron | 40.0% | |
| AGACCTGTCGTTATGTTCAT+AGG | + | chr3.3:84057225-84057244 | MS.gene38729:intron | 40.0% | |
| ATCCTCAACACAATTGCAGA+AGG | + | chr3.3:84059402-84059421 | MS.gene38729:CDS | 40.0% | |
| ATGGAGGAGAGGATTTAGAA+GGG | + | chr3.3:84057343-84057362 | MS.gene38729:intron | 40.0% | |
| ATGGCTACTCCTATTGGAAA+AGG | + | chr3.3:84058141-84058160 | MS.gene38729:CDS | 40.0% | |
| CAGGTCACTTCTCTTTCAAT+TGG | + | chr3.3:84056916-84056935 | MS.gene38729:intron | 40.0% | |
| CATTGACAATTGCTGCATGA+TGG | + | chr3.3:84058716-84058735 | MS.gene38729:CDS | 40.0% | |
| CCCAACGAAAGAAAACAGAA+TGG | - | chr3.3:84057750-84057769 | None:intergenic | 40.0% | |
| CTGCTGAAGTTCCAATTGAA+TGG | + | chr3.3:84058013-84058032 | MS.gene38729:CDS | 40.0% | |
| GAACACAGAGCTTTCTTACA+TGG | + | chr3.3:84058070-84058089 | MS.gene38729:CDS | 40.0% | |
| GATTGAAGGAGTAAATGTCC+AGG | - | chr3.3:84057696-84057715 | None:intergenic | 40.0% | |
| GTAAGAAAGCTCTGTGTTCT+AGG | - | chr3.3:84058069-84058088 | None:intergenic | 40.0% | |
| TAGGTCTGTTTGGTTAATGG+AGG | + | chr3.3:84057327-84057346 | MS.gene38729:intron | 40.0% | |
| TCCTCAACACAATTGCAGAA+GGG | + | chr3.3:84059403-84059422 | MS.gene38729:CDS | 40.0% | |
| TGGCTACTCCTATTGGAAAA+GGG | + | chr3.3:84058142-84058161 | MS.gene38729:CDS | 40.0% | |
| TTCTGCAATTGTGTTGAGGA+TGG | - | chr3.3:84059403-84059422 | None:intergenic | 40.0% | |
| TTGCTGCATGATGGTAATCT+TGG | + | chr3.3:84058725-84058744 | MS.gene38729:intron | 40.0% | |
| TTGGGTTCCCATCAGTATAT+TGG | + | chr3.3:84057765-84057784 | MS.gene38729:intron | 40.0% | |
| TTTCCAATAGGAGTAGCCAT+TGG | - | chr3.3:84058141-84058160 | None:intergenic | 40.0% | |
| ! | ACTCGCCTTCTGTATTTTCA+CGG | - | chr3.3:84058284-84058303 | None:intergenic | 40.0% |
| ! | ATCTTTTCCAGCTGCAACAT+TGG | + | chr3.3:84059027-84059046 | MS.gene38729:intron | 40.0% |
| ! | CCCATTCTGTTTTCTTTCGT+TGG | + | chr3.3:84057746-84057765 | MS.gene38729:intron | 40.0% |
| ! | GTATGCTTTTCACTATGCCA+AGG | + | chr3.3:84058470-84058489 | MS.gene38729:CDS | 40.0% |
| ! | GTTTTCTTCGAAACCAGTCA+TGG | + | chr3.3:84056953-84056972 | MS.gene38729:intron | 40.0% |
| ! | TTTGGGTTATAGGTTGTGAG+GGG | + | chr3.3:84058393-84058412 | MS.gene38729:intron | 40.0% |
| !! | AATGGGAAGAGCATTACGTA+GGG | + | chr3.3:84058031-84058050 | MS.gene38729:CDS | 40.0% |
| !! | TCATATCGAGTTTTGTAGCC+AGG | - | chr3.3:84058240-84058259 | None:intergenic | 40.0% |
| !! | TTGGTGATGCCTAACCTTTA+TGG | + | chr3.3:84058876-84058895 | MS.gene38729:CDS | 40.0% |
| AAACAGAATGGGAGCTCACT+TGG | - | chr3.3:84057738-84057757 | None:intergenic | 45.0% | |
| AAGGTTGTCCTTGATGCAAG+TGG | - | chr3.3:84059201-84059220 | None:intergenic | 45.0% | |
| AATACAGAAGGCGAGTACAG+TGG | + | chr3.3:84058288-84058307 | MS.gene38729:CDS | 45.0% | |
| AATGTCCAGGGTTTGAATCC+TGG | - | chr3.3:84057683-84057702 | None:intergenic | 45.0% | |
| ACCCAATAGCAGCAATCCTA+GGG | - | chr3.3:84057530-84057549 | None:intergenic | 45.0% | |
| ACCCTAGGATTGCTGCTATT+GGG | + | chr3.3:84057526-84057545 | MS.gene38729:intron | 45.0% | |
| ACCTAGGGTTTGACAGATAG+CGG | - | chr3.3:84056813-84056832 | None:intergenic | 45.0% | |
| ACGTCAAGCAAGTTTACGAG+TGG | + | chr3.3:84058443-84058462 | MS.gene38729:CDS | 45.0% | |
| ATAATCAGCGACCTTTGTGC+TGG | + | chr3.3:84058903-84058922 | MS.gene38729:CDS | 45.0% | |
| CAATTGGAACTTCAGCAGCT+TGG | - | chr3.3:84058011-84058030 | None:intergenic | 45.0% | |
| CAGATACTTCGACGAACTCT+CGG | + | chr3.3:84056784-84056803 | MS.gene38729:CDS | 45.0% | |
| CAGCAATCCTAGGGTATGTT+TGG | - | chr3.3:84057521-84057540 | None:intergenic | 45.0% | |
| CTAGGGTATGTTTGGATGGA+GGG | - | chr3.3:84057513-84057532 | None:intergenic | 45.0% | |
| CTGTTTGGTTAATGGAGGAG+AGG | + | chr3.3:84057332-84057351 | MS.gene38729:intron | 45.0% | |
| GAACTCAACAGCAAAGCAGT+TGG | - | chr3.3:84059324-84059343 | None:intergenic | 45.0% | |
| GAATGTGTTAGCGAACCTTC+AGG | - | chr3.3:84058563-84058582 | None:intergenic | 45.0% | |
| GATTCTTCACAAGCTGTGGA+TGG | - | chr3.3:84058839-84058858 | None:intergenic | 45.0% | |
| TACCCTAGGATTGCTGCTAT+TGG | + | chr3.3:84057525-84057544 | MS.gene38729:intron | 45.0% | |
| TAGGGTATGTTTGGATGGAG+GGG | - | chr3.3:84057512-84057531 | None:intergenic | 45.0% | |
| TCCCTTCTGCAATTGTGTTG+AGG | - | chr3.3:84059407-84059426 | None:intergenic | 45.0% | |
| TCGGTAAGAAGAAACAGGGT+TGG | + | chr3.3:84058105-84058124 | MS.gene38729:CDS | 45.0% | |
| TGTTACCATGTTGCGCCATT+TGG | + | chr3.3:84059344-84059363 | MS.gene38729:CDS | 45.0% | |
| TTTCACTATGCCAAGGCACA+TGG | + | chr3.3:84058477-84058496 | MS.gene38729:CDS | 45.0% | |
| TTTGTGCACCACTTGCATCA+AGG | + | chr3.3:84059190-84059209 | MS.gene38729:intron | 45.0% | |
| ! | GAACGATGCCCTTTTCCAAT+AGG | - | chr3.3:84058153-84058172 | None:intergenic | 45.0% |
| ! | GTACAGTGGACTTGAACATC+AGG | + | chr3.3:84058302-84058321 | MS.gene38729:CDS | 45.0% |
| !! | AAGTACCGAACTGCTGATCT+TGG | + | chr3.3:84059426-84059445 | MS.gene38729:CDS | 45.0% |
| !! | AGAAACAGGGTTGGCTTGAA+AGG | + | chr3.3:84058114-84058133 | MS.gene38729:CDS | 45.0% |
| !! | AGTGACCTGTTTGACGGATT+CGG | - | chr3.3:84056905-84056924 | None:intergenic | 45.0% |
| !! | ATCGAGTTTTGTAGCCAGGA+AGG | - | chr3.3:84058236-84058255 | None:intergenic | 45.0% |
| !! | CTGTGTTCTAGGGTCAATTG+TGG | - | chr3.3:84058058-84058077 | None:intergenic | 45.0% |
| !! | GAAACAGGGTTGGCTTGAAA+GGG | + | chr3.3:84058115-84058134 | MS.gene38729:CDS | 45.0% |
| !! | GAATGGGAAGAGCATTACGT+AGG | + | chr3.3:84058030-84058049 | MS.gene38729:CDS | 45.0% |
| AGCACCTGATATTGCTGGGA+AGG | + | chr3.3:84059089-84059108 | MS.gene38729:CDS | 50.0% | |
| CACCCAATAGCAGCAATCCT+AGG | - | chr3.3:84057531-84057550 | None:intergenic | 50.0% | |
| CAGGGTTTGAATCCTGGCAA+TGG | - | chr3.3:84057677-84057696 | None:intergenic | 50.0% | |
| CATTGCCAGGATTCAAACCC+TGG | + | chr3.3:84057675-84057694 | MS.gene38729:intron | 50.0% | |
| CCTAGGGTATGTTTGGATGG+AGG | - | chr3.3:84057514-84057533 | None:intergenic | 50.0% | |
| CCTCCATCCAAACATACCCT+AGG | + | chr3.3:84057511-84057530 | MS.gene38729:intron | 50.0% | |
| CTCACCTTCCCAGCAATATC+AGG | - | chr3.3:84059096-84059115 | None:intergenic | 50.0% | |
| CTCCAATCAAGCCAGCACAA+AGG | - | chr3.3:84058917-84058936 | None:intergenic | 50.0% | |
| CTTCGAAACCAGTCATGGCA+TGG | + | chr3.3:84056958-84056977 | MS.gene38729:intron | 50.0% | |
| GAGATCCAAATGGCGCAACA+TGG | - | chr3.3:84059352-84059371 | None:intergenic | 50.0% | |
| GCAGGATTCTTCACAAGCTG+TGG | - | chr3.3:84058843-84058862 | None:intergenic | 50.0% | |
| GCTCAGCACCTGATATTGCT+GGG | + | chr3.3:84059085-84059104 | MS.gene38729:CDS | 50.0% | |
| GGGAAAAGAGTGGCACGAAT+CGG | - | chr3.3:84056856-84056875 | None:intergenic | 50.0% | |
| GTATGTTTGGATGGAGGGGA+GGG | - | chr3.3:84057508-84057527 | None:intergenic | 50.0% | |
| GTGTGAGGGACGAGTAAGTT+AGG | + | chr3.3:84057308-84057327 | MS.gene38729:intron | 50.0% | |
| TACCGAACTGCTGATCTTGG+TGG | + | chr3.3:84059429-84059448 | MS.gene38729:CDS | 50.0% | |
| TAGCCAGGAAGGCTGTAACA+AGG | - | chr3.3:84058225-84058244 | None:intergenic | 50.0% | |
| TATGTTTGGATGGAGGGGAG+GGG | - | chr3.3:84057507-84057526 | None:intergenic | 50.0% | |
| TCTCTCTCTTCCATGTGCCT+TGG | - | chr3.3:84058490-84058509 | None:intergenic | 50.0% | |
| TGCCACCAAGATCAGCAGTT+CGG | - | chr3.3:84059434-84059453 | None:intergenic | 50.0% | |
| TGGAGGAAGAGAAGGACCTA+GGG | - | chr3.3:84056828-84056847 | None:intergenic | 50.0% | |
| ! | GACTGACGGTCTTTTCCTGA+AGG | + | chr3.3:84058545-84058564 | MS.gene38729:CDS | 50.0% |
| ! | GTCTGTTTTGCTGCTGAGAG+TGG | + | chr3.3:84057831-84057850 | MS.gene38729:intron | 50.0% |
| !! | ATTCGTGCCACTCTTTTCCC+CGG | + | chr3.3:84056856-84056875 | MS.gene38729:CDS | 50.0% |
| !! | CTGGTGATAGTGGTGTGTGA+GGG | + | chr3.3:84057294-84057313 | MS.gene38729:intron | 50.0% |
| !! | CTTTGTGCTGGCTTGATTGG+AGG | + | chr3.3:84058915-84058934 | MS.gene38729:CDS | 50.0% |
| !! | CTTTTCCCCGGTGATGGTAT+TGG | + | chr3.3:84056868-84056887 | MS.gene38729:CDS | 50.0% |
| !! | GACCTTTGTGCTGGCTTGAT+TGG | + | chr3.3:84058912-84058931 | MS.gene38729:CDS | 50.0% |
| !! | GCTGGCTTGATTGGAGGATT+AGG | + | chr3.3:84058921-84058940 | MS.gene38729:CDS | 50.0% |
| !! | TCTGGTGATAGTGGTGTGTG+AGG | + | chr3.3:84057293-84057312 | MS.gene38729:intron | 50.0% |
| !! | TTTGACGGATTCGGCGATCT+CGG | - | chr3.3:84056896-84056915 | None:intergenic | 50.0% |
| AAGAGTGGCACGAATCGGAG+TGG | - | chr3.3:84056851-84056870 | None:intergenic | 55.0% | |
| ACCATCACCGGGGAAAAGAG+TGG | - | chr3.3:84056866-84056885 | None:intergenic | 55.0% | |
| ATGTTTGGATGGAGGGGAGG+GGG | - | chr3.3:84057506-84057525 | None:intergenic | 55.0% | |
| ATTGCTGGGAAGGTGAGCTG+TGG | + | chr3.3:84059099-84059118 | MS.gene38729:intron | 55.0% | |
| CGACCTTGTTACAGCCTTCC+TGG | + | chr3.3:84058219-84058238 | MS.gene38729:CDS | 55.0% | |
| CTCGGGACCAATACCATCAC+CGG | - | chr3.3:84056878-84056897 | None:intergenic | 55.0% | |
| GACACATGCCATGCCATGAC+TGG | - | chr3.3:84056969-84056988 | None:intergenic | 55.0% | |
| GAGGATTAGGCTTGACACCC+AGG | + | chr3.3:84058934-84058953 | MS.gene38729:CDS | 55.0% | |
| GATCGCCGAATCCGTCAAAC+AGG | + | chr3.3:84056897-84056916 | MS.gene38729:CDS | 55.0% | |
| GCCGCTATCTGTCAAACCCT+AGG | + | chr3.3:84056809-84056828 | MS.gene38729:CDS | 55.0% | |
| GGCTCAGCACCTGATATTGC+TGG | + | chr3.3:84059084-84059103 | MS.gene38729:CDS | 55.0% | |
| GGGCCAATGGCTACTCCTAT+TGG | + | chr3.3:84058135-84058154 | MS.gene38729:CDS | 55.0% | |
| GGTATGTTTGGATGGAGGGG+AGG | - | chr3.3:84057509-84057528 | None:intergenic | 55.0% | |
| GTGGAGGAAGAGAAGGACCT+AGG | - | chr3.3:84056829-84056848 | None:intergenic | 55.0% | |
| TCCAGCTGCAACATTGGCGA+GGG | + | chr3.3:84059033-84059052 | MS.gene38729:intron | 55.0% | |
| TCGGGACCAATACCATCACC+GGG | - | chr3.3:84056877-84056896 | None:intergenic | 55.0% | |
| TTCCAGCTGCAACATTGGCG+AGG | + | chr3.3:84059032-84059051 | MS.gene38729:intron | 55.0% | |
| ! | GCACTTGCTGAGGCTGTACA+TGG | + | chr3.3:84059063-84059082 | MS.gene38729:CDS | 55.0% |
| ! | TCTGCTCTGGGTTGGGTTAC+CGG | + | chr3.3:84057580-84057599 | MS.gene38729:intron | 55.0% |
| !! | GGGAGGTATTGCACTTGCTG+AGG | + | chr3.3:84059053-84059072 | MS.gene38729:CDS | 55.0% |
| !! | GGTTGGCTTGAAAGGGCCAA+TGG | + | chr3.3:84058122-84058141 | MS.gene38729:CDS | 55.0% |
| !! | TTGACGGATTCGGCGATCTC+GGG | - | chr3.3:84056895-84056914 | None:intergenic | 55.0% |
| AGCTGCAACATTGGCGAGGG+AGG | + | chr3.3:84059036-84059055 | MS.gene38729:intron | 60.0% | |
| AGTGGCACGAATCGGAGTGG+TGG | - | chr3.3:84056848-84056867 | None:intergenic | 60.0% | |
| ATGTGCGAGGAGCTCTGCTC+TGG | + | chr3.3:84057567-84057586 | MS.gene38729:intron | 60.0% | |
| CGGGACCAATACCATCACCG+GGG | - | chr3.3:84056876-84056895 | None:intergenic | 60.0% | |
| TCCCTCGCCAATGTTGCAGC+TGG | - | chr3.3:84059037-84059056 | None:intergenic | 60.0% | |
| TGTGCGAGGAGCTCTGCTCT+GGG | + | chr3.3:84057568-84057587 | MS.gene38729:intron | 60.0% | |
| ! | CGGAGTGGTGGAGGAAGAGA+AGG | - | chr3.3:84056836-84056855 | None:intergenic | 60.0% |
| ! | CTGCTCTGGGTTGGGTTACC+GGG | + | chr3.3:84057581-84057600 | MS.gene38729:intron | 60.0% |
| ! | GAGGAGCTCTGCTCTGGGTT+GGG | + | chr3.3:84057573-84057592 | MS.gene38729:intron | 60.0% |
| ! | GCCACTCTTTTCCCCGGTGA+TGG | + | chr3.3:84056862-84056881 | MS.gene38729:CDS | 60.0% |
| ! | TGCTCTGGGTTGGGTTACCG+GGG | + | chr3.3:84057582-84057601 | MS.gene38729:intron | 60.0% |
| GGCACGAATCGGAGTGGTGG+AGG | - | chr3.3:84056845-84056864 | None:intergenic | 65.0% | |
| ! | CGAGGAGCTCTGCTCTGGGT+TGG | + | chr3.3:84057572-84057591 | MS.gene38729:intron | 65.0% |
| ! | CTCTGGGTTGGGTTACCGGG+GGG | + | chr3.3:84057584-84057603 | MS.gene38729:intron | 65.0% |
| ! | GCTCTGGGTTGGGTTACCGG+GGG | + | chr3.3:84057583-84057602 | MS.gene38729:intron | 65.0% |
| ! | TCTGGGTTGGGTTACCGGGG+GGG | + | chr3.3:84057585-84057604 | MS.gene38729:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 84056775 | 84059500 | 84056775 | ID=MS.gene38729 |
| chr3.3 | mRNA | 84056775 | 84059500 | 84056775 | ID=MS.gene38729.t1;Parent=MS.gene38729 |
| chr3.3 | exon | 84056775 | 84056918 | 84056775 | ID=MS.gene38729.t1.exon1;Parent=MS.gene38729.t1 |
| chr3.3 | CDS | 84056775 | 84056918 | 84056775 | ID=cds.MS.gene38729.t1;Parent=MS.gene38729.t1 |
| chr3.3 | exon | 84058003 | 84058323 | 84058003 | ID=MS.gene38729.t1.exon2;Parent=MS.gene38729.t1 |
| chr3.3 | CDS | 84058003 | 84058323 | 84058003 | ID=cds.MS.gene38729.t1;Parent=MS.gene38729.t1 |
| chr3.3 | exon | 84058405 | 84058566 | 84058405 | ID=MS.gene38729.t1.exon3;Parent=MS.gene38729.t1 |
| chr3.3 | CDS | 84058405 | 84058566 | 84058405 | ID=cds.MS.gene38729.t1;Parent=MS.gene38729.t1 |
| chr3.3 | exon | 84058663 | 84058737 | 84058663 | ID=MS.gene38729.t1.exon4;Parent=MS.gene38729.t1 |
| chr3.3 | CDS | 84058663 | 84058737 | 84058663 | ID=cds.MS.gene38729.t1;Parent=MS.gene38729.t1 |
| chr3.3 | exon | 84058846 | 84058955 | 84058846 | ID=MS.gene38729.t1.exon5;Parent=MS.gene38729.t1 |
| chr3.3 | CDS | 84058846 | 84058955 | 84058846 | ID=cds.MS.gene38729.t1;Parent=MS.gene38729.t1 |
| chr3.3 | exon | 84059038 | 84059110 | 84059038 | ID=MS.gene38729.t1.exon6;Parent=MS.gene38729.t1 |
| chr3.3 | CDS | 84059038 | 84059110 | 84059038 | ID=cds.MS.gene38729.t1;Parent=MS.gene38729.t1 |
| chr3.3 | exon | 84059309 | 84059500 | 84059309 | ID=MS.gene38729.t1.exon7;Parent=MS.gene38729.t1 |
| chr3.3 | CDS | 84059309 | 84059500 | 84059309 | ID=cds.MS.gene38729.t1;Parent=MS.gene38729.t1 |
| Gene Sequence |
| Protein sequence |
