Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012996.t1 | GAU44317.1 | 97.8 | 358 | 8 | 0 | 1 | 358 | 1 | 358 | 8.00E-198 | 699.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012996.t1 | Q945K7 | 84.7 | 372 | 43 | 1 | 1 | 358 | 3 | 374 | 3.0e-177 | 622.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012996.t1 | A0A2Z6PIA6 | 97.8 | 358 | 8 | 0 | 1 | 358 | 1 | 358 | 5.8e-198 | 699.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012996.t1 | MTR_3g101470 | 96.927 | 358 | 6 | 1 | 1 | 358 | 1 | 353 | 0.0 | 713 |
| MS.gene012996.t1 | MTR_1g064070 | 93.575 | 358 | 23 | 0 | 1 | 358 | 1 | 358 | 0.0 | 698 |
| MS.gene012996.t1 | MTR_8g074030 | 48.774 | 367 | 170 | 4 | 5 | 358 | 9 | 370 | 6.89e-119 | 348 |
| MS.gene012996.t1 | MTR_5g023740 | 47.541 | 366 | 178 | 4 | 2 | 358 | 6 | 366 | 4.68e-116 | 341 |
| MS.gene012996.t1 | MTR_8g074030 | 48.229 | 367 | 168 | 5 | 5 | 358 | 9 | 366 | 5.85e-115 | 338 |
| MS.gene012996.t1 | MTR_5g023740 | 46.995 | 366 | 176 | 5 | 2 | 358 | 6 | 362 | 5.50e-112 | 331 |
| MS.gene012996.t1 | MTR_5g023740 | 48.110 | 291 | 134 | 4 | 2 | 286 | 6 | 285 | 6.18e-94 | 282 |
| MS.gene012996.t1 | MTR_5g023740 | 49.455 | 275 | 128 | 3 | 2 | 270 | 6 | 275 | 1.30e-93 | 281 |
| MS.gene012996.t1 | MTR_5g023740 | 48.727 | 275 | 126 | 4 | 2 | 270 | 6 | 271 | 1.19e-89 | 271 |
| MS.gene012996.t1 | MTR_2g104610 | 31.105 | 344 | 207 | 10 | 23 | 341 | 36 | 374 | 6.18e-43 | 154 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012996.t1 | AT5G03290 | 84.677 | 372 | 43 | 1 | 1 | 358 | 3 | 374 | 0.0 | 642 |
| MS.gene012996.t1 | AT3G09810 | 83.478 | 345 | 57 | 0 | 14 | 358 | 30 | 374 | 0.0 | 610 |
| MS.gene012996.t1 | AT4G35260 | 50.746 | 335 | 157 | 2 | 27 | 358 | 37 | 366 | 3.11e-116 | 342 |
| MS.gene012996.t1 | AT2G17130 | 47.550 | 347 | 166 | 4 | 18 | 358 | 30 | 366 | 2.61e-112 | 332 |
| MS.gene012996.t1 | AT4G35650 | 47.838 | 370 | 170 | 6 | 7 | 358 | 3 | 367 | 4.34e-112 | 331 |
| MS.gene012996.t1 | AT2G17130 | 46.974 | 347 | 164 | 5 | 18 | 358 | 30 | 362 | 1.81e-108 | 322 |
| MS.gene012996.t1 | AT1G32480 | 42.081 | 221 | 115 | 4 | 34 | 252 | 4 | 213 | 1.93e-55 | 181 |
| MS.gene012996.t1 | AT1G31180 | 30.636 | 346 | 210 | 10 | 23 | 341 | 35 | 377 | 7.58e-44 | 156 |
| MS.gene012996.t1 | AT1G31180 | 30.636 | 346 | 210 | 10 | 23 | 341 | 50 | 392 | 1.33e-43 | 156 |
| MS.gene012996.t1 | AT5G14200 | 31.138 | 334 | 204 | 9 | 31 | 341 | 50 | 380 | 2.75e-43 | 154 |
| MS.gene012996.t1 | AT5G14200 | 31.138 | 334 | 204 | 9 | 31 | 341 | 50 | 380 | 4.26e-43 | 154 |
| MS.gene012996.t1 | AT1G80560 | 30.383 | 339 | 200 | 9 | 31 | 341 | 46 | 376 | 2.73e-41 | 149 |
| MS.gene012996.t1 | AT5G14200 | 26.840 | 231 | 145 | 7 | 31 | 239 | 50 | 278 | 9.15e-14 | 71.6 |
Find 88 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAAGAAAGCTCTGTGTTAT+AGG | 0.243276 | 3.2:-84514229 | None:intergenic |
| CGACCTTGTTACAGCCTTCC+TGG | 0.291185 | 3.2:+84514382 | MS.gene012996:CDS |
| GCTGGCTTGATTGGAGGATT+AGG | 0.316432 | 3.2:+84515083 | MS.gene012996:CDS |
| AGTGACCTGTTTGACGGATT+CGG | 0.336125 | 3.2:-84513091 | None:intergenic |
| TGTTACCATGTTGCGCCATT+TGG | 0.339580 | 3.2:+84515506 | MS.gene012996:CDS |
| TAGAATCGGTAAGAAGAAAC+AGG | 0.350254 | 3.2:+84514263 | MS.gene012996:CDS |
| GACCTTTGTGCTGGCTTGAT+TGG | 0.351034 | 3.2:+84515074 | MS.gene012996:CDS |
| CTCACCTTCCCAGCAATATC+AGG | 0.370076 | 3.2:-84515255 | None:intergenic |
| GGCTCAGCACCTGATATTGC+TGG | 0.370773 | 3.2:+84515246 | MS.gene012996:CDS |
| TTGGTGATGCCTAACCTTTA+TGG | 0.384596 | 3.2:+84515038 | MS.gene012996:CDS |
| TAATGCTCTTCCCATTCAAT+TGG | 0.399010 | 3.2:-84514187 | None:intergenic |
| GGGCCAATGGCTACTCCTAT+TGG | 0.403413 | 3.2:+84514298 | MS.gene012996:CDS |
| GAATACTATCTGCTTTATCA+TGG | 0.416549 | 3.2:-84515533 | None:intergenic |
| GAACGATGCCCTTTGCCAAT+AGG | 0.418274 | 3.2:-84514313 | None:intergenic |
| CTTTGTGCTGGCTTGATTGG+AGG | 0.426373 | 3.2:+84515077 | MS.gene012996:CDS |
| CTGCTGAAGTTCCAATTGAA+TGG | 0.426984 | 3.2:+84514176 | MS.gene012996:CDS |
| CGCTGATTATATCACCATAA+AGG | 0.430909 | 3.2:-84515052 | None:intergenic |
| TAACACAGAGCTTTCTTACA+TGG | 0.454052 | 3.2:+84514233 | MS.gene012996:CDS |
| TTTGACGGATTCGGCGATCT+CGG | 0.461264 | 3.2:-84513082 | None:intergenic |
| ACTTCCTCATATACTATCTC+TGG | 0.461486 | 3.2:-84514853 | None:intergenic |
| GATCGCCGAATCCGTCAAAC+AGG | 0.465664 | 3.2:+84513086 | MS.gene012996:CDS |
| TGCTGAAGTTCCAATTGAAT+GGG | 0.465872 | 3.2:+84514177 | MS.gene012996:CDS |
| AGAAACAGGGTTGGCTTGAA+AGG | 0.465983 | 3.2:+84514277 | MS.gene012996:CDS |
| TAAGAAAGCTCTGTGTTATA+GGG | 0.467578 | 3.2:-84514228 | None:intergenic |
| AAGAGAAGTGACCTGTTTGA+CGG | 0.467875 | 3.2:-84513097 | None:intergenic |
| TACATGGGAAAGTTTAGAAT+CGG | 0.469643 | 3.2:+84514249 | MS.gene012996:CDS |
| CAATTGGAACTTCAGCAGCT+TGG | 0.477455 | 3.2:-84514171 | None:intergenic |
| CCTCTCTCTTCCATGTGCCT+TGG | 0.478415 | 3.2:-84514650 | None:intergenic |
| CAGATACTTCGACGAACTCT+CGG | 0.482540 | 3.2:+84512973 | MS.gene012996:CDS |
| ATAATCAGCGACCTTTGTGC+TGG | 0.491910 | 3.2:+84515065 | MS.gene012996:CDS |
| TTGACGGATTCGGCGATCTC+GGG | 0.494209 | 3.2:-84513081 | None:intergenic |
| TCCCTTCTGCAATTGTGTTG+AGG | 0.495446 | 3.2:-84515566 | None:intergenic |
| ATATCCAGAGATAGTATATG+AGG | 0.495498 | 3.2:+84514849 | MS.gene012996:CDS |
| AAGTACCGAACTGCTGATCT+TGG | 0.507542 | 3.2:+84515588 | MS.gene012996:CDS |
| GAGGATTAGGCTTGACACCC+AGG | 0.514136 | 3.2:+84515096 | MS.gene012996:CDS |
| GGCACGAATCGGAGTGGTGG+AGG | 0.523029 | 3.2:-84513031 | None:intergenic |
| CTCGGGACCAATACCATCAC+CGG | 0.527524 | 3.2:-84513064 | None:intergenic |
| GGGAAAAGAGTGGCACGAAT+CGG | 0.530220 | 3.2:-84513042 | None:intergenic |
| GCACTTGCTGAGGCTGTACA+TGG | 0.533721 | 3.2:+84515225 | MS.gene012996:CDS |
| CTTTATCATGGAGATCCAAA+TGG | 0.536914 | 3.2:-84515521 | None:intergenic |
| GTGGAGGAAGAGAAGGACCT+AGG | 0.536981 | 3.2:-84513015 | None:intergenic |
| TTTCACTATGCCAAGGCACA+TGG | 0.540596 | 3.2:+84514640 | MS.gene012996:CDS |
| CGGAGTGGTGGAGGAAGAGA+AGG | 0.541340 | 3.2:-84513022 | None:intergenic |
| TGGCTACTCCTATTGGCAAA+GGG | 0.544231 | 3.2:+84514305 | MS.gene012996:CDS |
| TACCGAACTGCTGATCTTGG+TGG | 0.549369 | 3.2:+84515591 | MS.gene012996:CDS |
| GAAACAGGGTTGGCTTGAAA+GGG | 0.549689 | 3.2:+84514278 | MS.gene012996:CDS |
| TTCTGCAATTGTGTTGAGGA+TGG | 0.552934 | 3.2:-84515562 | None:intergenic |
| AGCTGCAACATTGGCGAGGG+AGG | 0.553258 | 3.2:+84515198 | MS.gene012996:intron |
| AGCACCTGATATTGCTGGGA+AGG | 0.553390 | 3.2:+84515251 | MS.gene012996:CDS |
| TGCCACCAAGATCAGCAGTT+CGG | 0.556271 | 3.2:-84515593 | None:intergenic |
| GTACAGTGGACTTGAACATC+AGG | 0.556840 | 3.2:+84514465 | MS.gene012996:CDS |
| CATTGACAATTGCTGCATGA+TGG | 0.561036 | 3.2:+84514879 | MS.gene012996:CDS |
| ATGGCTACTCCTATTGGCAA+AGG | 0.563155 | 3.2:+84514304 | MS.gene012996:CDS |
| ATTATATCACCATAAAGGTT+AGG | 0.563728 | 3.2:-84515047 | None:intergenic |
| TTTGGGTTATAGGTTGTGAG+GGG | 0.565156 | 3.2:+84514556 | MS.gene012996:intron |
| TCCAGCTGCAACATTGGCGA+GGG | 0.568702 | 3.2:+84515195 | MS.gene012996:intron |
| AACACAGAGCTTTCTTACAT+GGG | 0.574926 | 3.2:+84514234 | MS.gene012996:CDS |
| GAACTCAACAGCAAAGCAGT+TGG | 0.576627 | 3.2:-84515483 | None:intergenic |
| ATCCTCAACACAATTGCAGA+AGG | 0.580671 | 3.2:+84515564 | MS.gene012996:CDS |
| GCTCAGCACCTGATATTGCT+GGG | 0.581328 | 3.2:+84515247 | MS.gene012996:CDS |
| TCGGTAAGAAGAAACAGGGT+TGG | 0.583355 | 3.2:+84514268 | MS.gene012996:CDS |
| CTGTGTTATAGGGTCAATTG+TGG | 0.587270 | 3.2:-84514218 | None:intergenic |
| ACCTAGGGTTTGACAGATAG+CGG | 0.587539 | 3.2:-84512999 | None:intergenic |
| AGTGGCACGAATCGGAGTGG+TGG | 0.588339 | 3.2:-84513034 | None:intergenic |
| TTCCAGCTGCAACATTGGCG+AGG | 0.595214 | 3.2:+84515194 | MS.gene012996:intron |
| TTGCCAATAGGAGTAGCCAT+TGG | 0.595229 | 3.2:-84514301 | None:intergenic |
| GGTTGGCTTGAAAGGGCCAA+TGG | 0.602286 | 3.2:+84514285 | MS.gene012996:CDS |
| GGGAGGTATTGCACTTGCTG+AGG | 0.604265 | 3.2:+84515215 | MS.gene012996:CDS |
| GCCGCTATCTGTCAAACCCT+AGG | 0.605814 | 3.2:+84512998 | MS.gene012996:CDS |
| TCGGGACCAATACCATCACC+GGG | 0.615254 | 3.2:-84513063 | None:intergenic |
| TGGAGGAAGAGAAGGACCTA+GGG | 0.615545 | 3.2:-84513014 | None:intergenic |
| CCAAGGCACATGGAAGAGAG+AGG | 0.619352 | 3.2:+84514650 | MS.gene012996:CDS |
| GAGATCCAAATGGCGCAACA+TGG | 0.630253 | 3.2:-84515511 | None:intergenic |
| AACATTATGCAAAAGACTGA+CGG | 0.632176 | 3.2:+84514694 | MS.gene012996:CDS |
| AATGGGAAGAGCATTACGTA+GGG | 0.633880 | 3.2:+84514194 | MS.gene012996:CDS |
| CAAGGCACATGGAAGAGAGA+GGG | 0.638399 | 3.2:+84514651 | MS.gene012996:CDS |
| CAGGAAGGCTGTAACAAGGT+CGG | 0.645409 | 3.2:-84514381 | None:intergenic |
| TAGCCAGGAAGGCTGTAACA+AGG | 0.645729 | 3.2:-84514385 | None:intergenic |
| AATACAGAAGGCGAGTACAG+TGG | 0.649635 | 3.2:+84514451 | MS.gene012996:CDS |
| ACAATCCGTGAAAATACAGA+AGG | 0.651487 | 3.2:+84514439 | MS.gene012996:CDS |
| GAATGGGAAGAGCATTACGT+AGG | 0.653825 | 3.2:+84514193 | MS.gene012996:CDS |
| ACCATCACCGGGGAAAAGAG+TGG | 0.655812 | 3.2:-84513052 | None:intergenic |
| ACGTCAAGCAAGTTTACGAG+TGG | 0.657438 | 3.2:+84514606 | MS.gene012996:CDS |
| TCCTCAACACAATTGCAGAA+GGG | 0.663199 | 3.2:+84515565 | MS.gene012996:CDS |
| AGAATCGGTAAGAAGAAACA+GGG | 0.666965 | 3.2:+84514264 | MS.gene012996:CDS |
| AAGAGTGGCACGAATCGGAG+TGG | 0.687099 | 3.2:-84513037 | None:intergenic |
| CTCCAATCAAGCCAGCACAA+AGG | 0.693100 | 3.2:-84515076 | None:intergenic |
| CGGGACCAATACCATCACCG+GGG | 0.794777 | 3.2:-84513062 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTATAAAATTAAATTT+GGG | - | chr3.2:84513234-84513253 | None:intergenic | 0.0% |
| !! | TATAATTATAAAATTAAATT+TGG | - | chr3.2:84513235-84513254 | None:intergenic | 0.0% |
| !!! | TTAATTTATTTAGCATTTTT+GGG | + | chr3.2:84514539-84514558 | MS.gene012996:intron | 10.0% |
| !!! | TTTAATTTATTTAGCATTTT+TGG | + | chr3.2:84514538-84514557 | MS.gene012996:intron | 10.0% |
| !!! | TTTGTTTTGTTTTAAATTTT+GGG | + | chr3.2:84515122-84515141 | MS.gene012996:intron | 10.0% |
| !!! | TTTTGTTTTGTTTTAAATTT+TGG | + | chr3.2:84515121-84515140 | MS.gene012996:intron | 10.0% |
| !! | AACAAGTGAAATTTAATTAA+AGG | - | chr3.2:84515432-84515451 | None:intergenic | 15.0% |
| !! | TTAAAAAAACTGATACAAAT+GGG | + | chr3.2:84513364-84513383 | MS.gene012996:intron | 15.0% |
| !! | TTTAAAAAAACTGATACAAA+TGG | + | chr3.2:84513363-84513382 | MS.gene012996:intron | 15.0% |
| !! | AAATTAAATTGATCAGAACT+TGG | - | chr3.2:84514526-84514545 | None:intergenic | 20.0% |
| !! | TAAAACAAAACAAAAAACCT+GGG | - | chr3.2:84515116-84515135 | None:intergenic | 20.0% |
| !! | TAAATTTGGGAAAACATATT+TGG | - | chr3.2:84513221-84513240 | None:intergenic | 20.0% |
| !! | TTAAAACAAAACAAAAAACC+TGG | - | chr3.2:84515117-84515136 | None:intergenic | 20.0% |
| !!! | ACAAGCATAAAGTTTTAAAA+CGG | - | chr3.2:84515311-84515330 | None:intergenic | 20.0% |
| !!! | GTTTTAAAACGGATAATATA+TGG | - | chr3.2:84515300-84515319 | None:intergenic | 20.0% |
| !!! | TTTTTACTATTGCTACAATT+AGG | + | chr3.2:84514144-84514163 | MS.gene012996:intron | 20.0% |
| ! | AAAATGAACCAATATACTGA+TGG | - | chr3.2:84513939-84513958 | None:intergenic | 25.0% |
| ! | AAATAAGATAACAGCAAACA+AGG | - | chr3.2:84513278-84513297 | None:intergenic | 25.0% |
| ! | AAATGAACCAATATACTGAT+GGG | - | chr3.2:84513938-84513957 | None:intergenic | 25.0% |
| ! | ATTATATCACCATAAAGGTT+AGG | - | chr3.2:84515050-84515069 | None:intergenic | 25.0% |
| ! | ATTTAAGGAGTAAATATCCA+GGG | - | chr3.2:84513858-84513877 | None:intergenic | 25.0% |
| ! | CTAAGAGATTAAAGGATTTA+AGG | - | chr3.2:84513873-84513892 | None:intergenic | 25.0% |
| ! | GTCATTATTACTAGTATTCA+AGG | - | chr3.2:84514783-84514802 | None:intergenic | 25.0% |
| ! | TATAAGCTCAAGTTCAAATT+AGG | - | chr3.2:84513395-84513414 | None:intergenic | 25.0% |
| !! | TAAGTTCTTTTCTTAGAGTA+AGG | - | chr3.2:84514345-84514364 | None:intergenic | 25.0% |
| !!! | AAACTTTATGCTTGTTTTCA+TGG | + | chr3.2:84515316-84515335 | MS.gene012996:intron | 25.0% |
| !!! | ATTGAGACAGAGTATTTTAT+AGG | - | chr3.2:84514754-84514773 | None:intergenic | 25.0% |
| !!! | ATTTAGCATTTTTGGGTTAT+AGG | + | chr3.2:84514546-84514565 | MS.gene012996:intron | 25.0% |
| !!! | TGCTTTGTTTGTTTCTTATT+GGG | + | chr3.2:84514061-84514080 | MS.gene012996:intron | 25.0% |
| !!! | TTGCTTTGTTTGTTTCTTAT+TGG | + | chr3.2:84514060-84514079 | MS.gene012996:intron | 25.0% |
| AACATTATGCAAAAGACTGA+CGG | + | chr3.2:84514694-84514713 | MS.gene012996:CDS | 30.0% | |
| AAGTTTCTTAGTTCATCTGA+AGG | - | chr3.2:84515382-84515401 | None:intergenic | 30.0% | |
| AATACTATAGTTTATGTGCG+AGG | + | chr3.2:84513723-84513742 | MS.gene012996:intron | 30.0% | |
| ATATCCAGAGATAGTATATG+AGG | + | chr3.2:84514849-84514868 | MS.gene012996:CDS | 30.0% | |
| GAATACTATCTGCTTTATCA+TGG | - | chr3.2:84515536-84515555 | None:intergenic | 30.0% | |
| GATTTAAGGAGTAAATATCC+AGG | - | chr3.2:84513859-84513878 | None:intergenic | 30.0% | |
| TAAGAAAGCTCTGTGTTATA+GGG | - | chr3.2:84514231-84514250 | None:intergenic | 30.0% | |
| TCTTTCTTTGTCAATTGTCA+TGG | + | chr3.2:84513964-84513983 | MS.gene012996:intron | 30.0% | |
| ! | TACATGGGAAAGTTTAGAAT+CGG | + | chr3.2:84514249-84514268 | MS.gene012996:CDS | 30.0% |
| ! | TTGCAATTGACTTAAACCTT+TGG | + | chr3.2:84513304-84513323 | MS.gene012996:intron | 30.0% |
| !! | AAATTTCACTTGTTTTCCTG+TGG | + | chr3.2:84515438-84515457 | MS.gene012996:intron | 30.0% |
| !! | TTAACTTGATGAGTTGATGT+AGG | + | chr3.2:84514911-84514930 | MS.gene012996:intron | 30.0% |
| AACACAGAGCTTTCTTACAT+GGG | + | chr3.2:84514234-84514253 | MS.gene012996:CDS | 35.0% | |
| AAGTTAGGTCTGTTTGGTTA+TGG | + | chr3.2:84513493-84513512 | MS.gene012996:intron | 35.0% | |
| ACAATCCGTGAAAATACAGA+AGG | + | chr3.2:84514439-84514458 | MS.gene012996:CDS | 35.0% | |
| ACTTCCTCATATACTATCTC+TGG | - | chr3.2:84514856-84514875 | None:intergenic | 35.0% | |
| AGAATCGGTAAGAAGAAACA+GGG | + | chr3.2:84514264-84514283 | MS.gene012996:CDS | 35.0% | |
| ATGGTTCAAAATACAGCATC+TGG | + | chr3.2:84513445-84513464 | MS.gene012996:intron | 35.0% | |
| CAAACAAAGCAAGAGATAGA+AGG | - | chr3.2:84514052-84514071 | None:intergenic | 35.0% | |
| CAAATTCTGCATAAAACCAC+AGG | - | chr3.2:84515457-84515476 | None:intergenic | 35.0% | |
| CCAACGAAAGAAAACAGAAT+GGG | - | chr3.2:84513912-84513931 | None:intergenic | 35.0% | |
| CTTTATCATGGAGATCCAAA+TGG | - | chr3.2:84515524-84515543 | None:intergenic | 35.0% | |
| GTAAGAAAGCTCTGTGTTAT+AGG | - | chr3.2:84514232-84514251 | None:intergenic | 35.0% | |
| TAACACAGAGCTTTCTTACA+TGG | + | chr3.2:84514233-84514252 | MS.gene012996:CDS | 35.0% | |
| TAATGCTCTTCCCATTCAAT+TGG | - | chr3.2:84514190-84514209 | None:intergenic | 35.0% | |
| TAGAATCGGTAAGAAGAAAC+AGG | + | chr3.2:84514263-84514282 | MS.gene012996:CDS | 35.0% | |
| TGCTGAAGTTCCAATTGAAT+GGG | + | chr3.2:84514177-84514196 | MS.gene012996:CDS | 35.0% | |
| TGGTTGTGCTAAGAGATTAA+AGG | - | chr3.2:84513881-84513900 | None:intergenic | 35.0% | |
| TTTGTCAATTGTCATGGATG+TGG | + | chr3.2:84513970-84513989 | MS.gene012996:intron | 35.0% | |
| ! | ACCAATACATCAAAAAGTGC+AGG | - | chr3.2:84515023-84515042 | None:intergenic | 35.0% |
| ! | CCATTCTGTTTTCTTTCGTT+GGG | + | chr3.2:84513910-84513929 | MS.gene012996:intron | 35.0% |
| ! | CGCTGATTATATCACCATAA+AGG | - | chr3.2:84515055-84515074 | None:intergenic | 35.0% |
| ! | GTCAGTCTTTTGCATAATGT+TGG | - | chr3.2:84514695-84514714 | None:intergenic | 35.0% |
| ! | GTTTTCTTCGAAACCAGTAA+TGG | + | chr3.2:84513142-84513161 | MS.gene012996:intron | 35.0% |
| ! | TTAGTATTTTCTCCATTGCC+AGG | + | chr3.2:84513825-84513844 | MS.gene012996:intron | 35.0% |
| !! | AGATGCTGTATTTTGAACCA+TGG | - | chr3.2:84513446-84513465 | None:intergenic | 35.0% |
| !! | GATATTTTTCAGCAACCTCA+CGG | - | chr3.2:84514834-84514853 | None:intergenic | 35.0% |
| !! | TCCTGCACTTTTTGATGTAT+TGG | + | chr3.2:84515019-84515038 | MS.gene012996:CDS | 35.0% |
| !!! | CTGTGGTTTTATGCAGAATT+TGG | + | chr3.2:84515455-84515474 | MS.gene012996:intron | 35.0% |
| !!! | GACACTAGTTTTATCTCCAA+AGG | - | chr3.2:84513323-84513342 | None:intergenic | 35.0% |
| !!! | TTATTTTTAGTGTTGCCGTG+AGG | + | chr3.2:84514816-84514835 | MS.gene012996:intron | 35.0% |
| !!! | TTTTGGGTTATAGGTTGTGA+GGG | + | chr3.2:84514555-84514574 | MS.gene012996:intron | 35.0% |
| !!! | TTTTTGGGTTATAGGTTGTG+AGG | + | chr3.2:84514554-84514573 | MS.gene012996:intron | 35.0% |
| AAGAGAAGTGACCTGTTTGA+CGG | - | chr3.2:84513100-84513119 | None:intergenic | 40.0% | |
| AATACAGCATCTGGTGATAG+TGG | + | chr3.2:84513454-84513473 | MS.gene012996:intron | 40.0% | |
| AATATCCAGGGTTTGAATCC+TGG | - | chr3.2:84513846-84513865 | None:intergenic | 40.0% | |
| AATCCTAGGGTATGTTTGGA+TGG | - | chr3.2:84513686-84513705 | None:intergenic | 40.0% | |
| ACGAGTAAGTTAGGTCTGTT+TGG | + | chr3.2:84513487-84513506 | MS.gene012996:intron | 40.0% | |
| ATCCTCAACACAATTGCAGA+AGG | + | chr3.2:84515564-84515583 | MS.gene012996:CDS | 40.0% | |
| ATGGAGGAGAGGATTTAGAA+GGG | + | chr3.2:84513512-84513531 | MS.gene012996:intron | 40.0% | |
| CAGGTCACTTCTCTTTCAAT+TGG | + | chr3.2:84513105-84513124 | MS.gene012996:intron | 40.0% | |
| CATTGACAATTGCTGCATGA+TGG | + | chr3.2:84514879-84514898 | MS.gene012996:CDS | 40.0% | |
| CCCAACGAAAGAAAACAGAA+TGG | - | chr3.2:84513913-84513932 | None:intergenic | 40.0% | |
| CTGCTGAAGTTCCAATTGAA+TGG | + | chr3.2:84514176-84514195 | MS.gene012996:CDS | 40.0% | |
| CTGTGTTATAGGGTCAATTG+TGG | - | chr3.2:84514221-84514240 | None:intergenic | 40.0% | |
| TATGGAGGAGAGGATTTAGA+AGG | + | chr3.2:84513511-84513530 | MS.gene012996:intron | 40.0% | |
| TCCTCAACACAATTGCAGAA+GGG | + | chr3.2:84515565-84515584 | MS.gene012996:CDS | 40.0% | |
| TTAGGTCTGTTTGGTTATGG+AGG | + | chr3.2:84513496-84513515 | MS.gene012996:intron | 40.0% | |
| TTCTGCAATTGTGTTGAGGA+TGG | - | chr3.2:84515565-84515584 | None:intergenic | 40.0% | |
| TTGCTGCATGATGGTAATCT+TGG | + | chr3.2:84514888-84514907 | MS.gene012996:intron | 40.0% | |
| TTGGGTTCCCATCAGTATAT+TGG | + | chr3.2:84513928-84513947 | MS.gene012996:intron | 40.0% | |
| ! | ACTCGCCTTCTGTATTTTCA+CGG | - | chr3.2:84514447-84514466 | None:intergenic | 40.0% |
| ! | ATCTTTTCCAGCTGCAACAT+TGG | + | chr3.2:84515189-84515208 | MS.gene012996:intron | 40.0% |
| ! | CCCATTCTGTTTTCTTTCGT+TGG | + | chr3.2:84513909-84513928 | MS.gene012996:intron | 40.0% |
| ! | GTATGCTTTTCACTATGCCA+AGG | + | chr3.2:84514633-84514652 | MS.gene012996:CDS | 40.0% |
| ! | TTTGGGTTATAGGTTGTGAG+GGG | + | chr3.2:84514556-84514575 | MS.gene012996:intron | 40.0% |
| !! | AATGGGAAGAGCATTACGTA+GGG | + | chr3.2:84514194-84514213 | MS.gene012996:CDS | 40.0% |
| !! | TCATATCGAGTTTTGTAGCC+AGG | - | chr3.2:84514403-84514422 | None:intergenic | 40.0% |
| !! | TTGGTGATGCCTAACCTTTA+TGG | + | chr3.2:84515038-84515057 | MS.gene012996:CDS | 40.0% |
| AAACAGAATGGGAGCTCACT+TGG | - | chr3.2:84513901-84513920 | None:intergenic | 45.0% | |
| AAACCAGTAATGGCATGGCA+TGG | + | chr3.2:84513152-84513171 | MS.gene012996:intron | 45.0% | |
| AAGGTTGTCCTTGATGCAAG+TGG | - | chr3.2:84515363-84515382 | None:intergenic | 45.0% | |
| AATACAGAAGGCGAGTACAG+TGG | + | chr3.2:84514451-84514470 | MS.gene012996:CDS | 45.0% | |
| ACCCAATAGCAGCAATCCTA+GGG | - | chr3.2:84513699-84513718 | None:intergenic | 45.0% | |
| ACCCTAGGATTGCTGCTATT+GGG | + | chr3.2:84513695-84513714 | MS.gene012996:intron | 45.0% | |
| ACCTAGGGTTTGACAGATAG+CGG | - | chr3.2:84513002-84513021 | None:intergenic | 45.0% | |
| ACGTCAAGCAAGTTTACGAG+TGG | + | chr3.2:84514606-84514625 | MS.gene012996:CDS | 45.0% | |
| ATAATCAGCGACCTTTGTGC+TGG | + | chr3.2:84515065-84515084 | MS.gene012996:CDS | 45.0% | |
| ATGGCTACTCCTATTGGCAA+AGG | + | chr3.2:84514304-84514323 | MS.gene012996:CDS | 45.0% | |
| CAATTGGAACTTCAGCAGCT+TGG | - | chr3.2:84514174-84514193 | None:intergenic | 45.0% | |
| CAGATACTTCGACGAACTCT+CGG | + | chr3.2:84512973-84512992 | MS.gene012996:CDS | 45.0% | |
| CAGCAATCCTAGGGTATGTT+TGG | - | chr3.2:84513690-84513709 | None:intergenic | 45.0% | |
| CCATGGATGATTGTAGTGAC+AGG | - | chr3.2:84513429-84513448 | None:intergenic | 45.0% | |
| CCTGTCACTACAATCATCCA+TGG | + | chr3.2:84513426-84513445 | MS.gene012996:intron | 45.0% | |
| CTAGGGTATGTTTGGATGGA+GGG | - | chr3.2:84513682-84513701 | None:intergenic | 45.0% | |
| CTTCGAAACCAGTAATGGCA+TGG | + | chr3.2:84513147-84513166 | MS.gene012996:intron | 45.0% | |
| GAACTCAACAGCAAAGCAGT+TGG | - | chr3.2:84515486-84515505 | None:intergenic | 45.0% | |
| GAATGTGTTAGCGAACCTTC+AGG | - | chr3.2:84514726-84514745 | None:intergenic | 45.0% | |
| GATTCTTCACAAGCTGTGGA+TGG | - | chr3.2:84515001-84515020 | None:intergenic | 45.0% | |
| TACCCTAGGATTGCTGCTAT+TGG | + | chr3.2:84513694-84513713 | MS.gene012996:intron | 45.0% | |
| TAGGGTATGTTTGGATGGAG+GGG | - | chr3.2:84513681-84513700 | None:intergenic | 45.0% | |
| TCCCTTCTGCAATTGTGTTG+AGG | - | chr3.2:84515569-84515588 | None:intergenic | 45.0% | |
| TCGGTAAGAAGAAACAGGGT+TGG | + | chr3.2:84514268-84514287 | MS.gene012996:CDS | 45.0% | |
| TCTGTTTGGTTATGGAGGAG+AGG | + | chr3.2:84513501-84513520 | MS.gene012996:intron | 45.0% | |
| TGGCTACTCCTATTGGCAAA+GGG | + | chr3.2:84514305-84514324 | MS.gene012996:CDS | 45.0% | |
| TGTTACCATGTTGCGCCATT+TGG | + | chr3.2:84515506-84515525 | MS.gene012996:CDS | 45.0% | |
| TTGCCAATAGGAGTAGCCAT+TGG | - | chr3.2:84514304-84514323 | None:intergenic | 45.0% | |
| TTTCACTATGCCAAGGCACA+TGG | + | chr3.2:84514640-84514659 | MS.gene012996:CDS | 45.0% | |
| TTTGTGCACCACTTGCATCA+AGG | + | chr3.2:84515352-84515371 | MS.gene012996:intron | 45.0% | |
| ! | GTACAGTGGACTTGAACATC+AGG | + | chr3.2:84514465-84514484 | MS.gene012996:CDS | 45.0% |
| !! | AAGTACCGAACTGCTGATCT+TGG | + | chr3.2:84515588-84515607 | MS.gene012996:CDS | 45.0% |
| !! | AGAAACAGGGTTGGCTTGAA+AGG | + | chr3.2:84514277-84514296 | MS.gene012996:CDS | 45.0% |
| !! | AGTGACCTGTTTGACGGATT+CGG | - | chr3.2:84513094-84513113 | None:intergenic | 45.0% |
| !! | ATCGAGTTTTGTAGCCAGGA+AGG | - | chr3.2:84514399-84514418 | None:intergenic | 45.0% |
| !! | GAAACAGGGTTGGCTTGAAA+GGG | + | chr3.2:84514278-84514297 | MS.gene012996:CDS | 45.0% |
| !! | GAATGGGAAGAGCATTACGT+AGG | + | chr3.2:84514193-84514212 | MS.gene012996:CDS | 45.0% |
| AGCACCTGATATTGCTGGGA+AGG | + | chr3.2:84515251-84515270 | MS.gene012996:CDS | 50.0% | |
| ATGCCATGCCATGCCATTAC+TGG | - | chr3.2:84513158-84513177 | None:intergenic | 50.0% | |
| CAAGGCACATGGAAGAGAGA+GGG | + | chr3.2:84514651-84514670 | MS.gene012996:CDS | 50.0% | |
| CACCCAATAGCAGCAATCCT+AGG | - | chr3.2:84513700-84513719 | None:intergenic | 50.0% | |
| CAGGAAGGCTGTAACAAGGT+CGG | - | chr3.2:84514384-84514403 | None:intergenic | 50.0% | |
| CAGGGTTTGAATCCTGGCAA+TGG | - | chr3.2:84513840-84513859 | None:intergenic | 50.0% | |
| CATTGCCAGGATTCAAACCC+TGG | + | chr3.2:84513838-84513857 | MS.gene012996:intron | 50.0% | |
| CCTAGGGTATGTTTGGATGG+AGG | - | chr3.2:84513683-84513702 | None:intergenic | 50.0% | |
| CCTCCATCCAAACATACCCT+AGG | + | chr3.2:84513680-84513699 | MS.gene012996:intron | 50.0% | |
| CTCACCTTCCCAGCAATATC+AGG | - | chr3.2:84515258-84515277 | None:intergenic | 50.0% | |
| CTCCAATCAAGCCAGCACAA+AGG | - | chr3.2:84515079-84515098 | None:intergenic | 50.0% | |
| GAACGATGCCCTTTGCCAAT+AGG | - | chr3.2:84514316-84514335 | None:intergenic | 50.0% | |
| GAGATCCAAATGGCGCAACA+TGG | - | chr3.2:84515514-84515533 | None:intergenic | 50.0% | |
| GCAGGATTCTTCACAAGCTG+TGG | - | chr3.2:84515005-84515024 | None:intergenic | 50.0% | |
| GCTCAGCACCTGATATTGCT+GGG | + | chr3.2:84515247-84515266 | MS.gene012996:CDS | 50.0% | |
| GGGAAAAGAGTGGCACGAAT+CGG | - | chr3.2:84513045-84513064 | None:intergenic | 50.0% | |
| GTATGTTTGGATGGAGGGGA+GGG | - | chr3.2:84513677-84513696 | None:intergenic | 50.0% | |
| GTGTGTGGGACGAGTAAGTT+AGG | + | chr3.2:84513478-84513497 | MS.gene012996:intron | 50.0% | |
| TACCGAACTGCTGATCTTGG+TGG | + | chr3.2:84515591-84515610 | MS.gene012996:CDS | 50.0% | |
| TAGCCAGGAAGGCTGTAACA+AGG | - | chr3.2:84514388-84514407 | None:intergenic | 50.0% | |
| TATGTTTGGATGGAGGGGAG+GGG | - | chr3.2:84513676-84513695 | None:intergenic | 50.0% | |
| TGCCACCAAGATCAGCAGTT+CGG | - | chr3.2:84515596-84515615 | None:intergenic | 50.0% | |
| TGGAGGAAGAGAAGGACCTA+GGG | - | chr3.2:84513017-84513036 | None:intergenic | 50.0% | |
| ! | CTCTGCTCTGGGTTTGGTTA+CGG | + | chr3.2:84513748-84513767 | MS.gene012996:intron | 50.0% |
| ! | GACTGACGGTCTTTTCCTGA+AGG | + | chr3.2:84514708-84514727 | MS.gene012996:CDS | 50.0% |
| ! | GTCTGTTTTGCTGCTGAGAG+TGG | + | chr3.2:84513994-84514013 | MS.gene012996:intron | 50.0% |
| ! | TCTGCTCTGGGTTTGGTTAC+GGG | + | chr3.2:84513749-84513768 | MS.gene012996:intron | 50.0% |
| !! | ATTCGTGCCACTCTTTTCCC+CGG | + | chr3.2:84513045-84513064 | MS.gene012996:CDS | 50.0% |
| !! | CTGGTGATAGTGGTGTGTGT+GGG | + | chr3.2:84513464-84513483 | MS.gene012996:intron | 50.0% |
| !! | CTTTGTGCTGGCTTGATTGG+AGG | + | chr3.2:84515077-84515096 | MS.gene012996:CDS | 50.0% |
| !! | CTTTTCCCCGGTGATGGTAT+TGG | + | chr3.2:84513057-84513076 | MS.gene012996:CDS | 50.0% |
| !! | GACCTTTGTGCTGGCTTGAT+TGG | + | chr3.2:84515074-84515093 | MS.gene012996:CDS | 50.0% |
| !! | GCTGGCTTGATTGGAGGATT+AGG | + | chr3.2:84515083-84515102 | MS.gene012996:CDS | 50.0% |
| !! | TCTGGTGATAGTGGTGTGTG+TGG | + | chr3.2:84513463-84513482 | MS.gene012996:intron | 50.0% |
| !! | TTTGACGGATTCGGCGATCT+CGG | - | chr3.2:84513085-84513104 | None:intergenic | 50.0% |
| AAGAGTGGCACGAATCGGAG+TGG | - | chr3.2:84513040-84513059 | None:intergenic | 55.0% | |
| ACCATCACCGGGGAAAAGAG+TGG | - | chr3.2:84513055-84513074 | None:intergenic | 55.0% | |
| ATGTTTGGATGGAGGGGAGG+GGG | - | chr3.2:84513675-84513694 | None:intergenic | 55.0% | |
| ATTGCTGGGAAGGTGAGCTG+TGG | + | chr3.2:84515261-84515280 | MS.gene012996:intron | 55.0% | |
| CCAAGGCACATGGAAGAGAG+AGG | + | chr3.2:84514650-84514669 | MS.gene012996:CDS | 55.0% | |
| CCTCTCTCTTCCATGTGCCT+TGG | - | chr3.2:84514653-84514672 | None:intergenic | 55.0% | |
| CGACCTTGTTACAGCCTTCC+TGG | + | chr3.2:84514382-84514401 | MS.gene012996:CDS | 55.0% | |
| CTCGGGACCAATACCATCAC+CGG | - | chr3.2:84513067-84513086 | None:intergenic | 55.0% | |
| GAGGATTAGGCTTGACACCC+AGG | + | chr3.2:84515096-84515115 | MS.gene012996:CDS | 55.0% | |
| GATCGCCGAATCCGTCAAAC+AGG | + | chr3.2:84513086-84513105 | MS.gene012996:CDS | 55.0% | |
| GCCGCTATCTGTCAAACCCT+AGG | + | chr3.2:84512998-84513017 | MS.gene012996:CDS | 55.0% | |
| GGCTCAGCACCTGATATTGC+TGG | + | chr3.2:84515246-84515265 | MS.gene012996:CDS | 55.0% | |
| GGGCCAATGGCTACTCCTAT+TGG | + | chr3.2:84514298-84514317 | MS.gene012996:CDS | 55.0% | |
| GGTATGTTTGGATGGAGGGG+AGG | - | chr3.2:84513678-84513697 | None:intergenic | 55.0% | |
| GTGGAGGAAGAGAAGGACCT+AGG | - | chr3.2:84513018-84513037 | None:intergenic | 55.0% | |
| TCCAGCTGCAACATTGGCGA+GGG | + | chr3.2:84515195-84515214 | MS.gene012996:intron | 55.0% | |
| TCGGGACCAATACCATCACC+GGG | - | chr3.2:84513066-84513085 | None:intergenic | 55.0% | |
| TTCCAGCTGCAACATTGGCG+AGG | + | chr3.2:84515194-84515213 | MS.gene012996:intron | 55.0% | |
| ! | CTGCTCTGGGTTTGGTTACG+GGG | + | chr3.2:84513750-84513769 | MS.gene012996:intron | 55.0% |
| ! | GCACTTGCTGAGGCTGTACA+TGG | + | chr3.2:84515225-84515244 | MS.gene012996:CDS | 55.0% |
| ! | TGCTCTGGGTTTGGTTACGG+GGG | + | chr3.2:84513751-84513770 | MS.gene012996:intron | 55.0% |
| !! | GGGAGGTATTGCACTTGCTG+AGG | + | chr3.2:84515215-84515234 | MS.gene012996:CDS | 55.0% |
| !! | GGTTGGCTTGAAAGGGCCAA+TGG | + | chr3.2:84514285-84514304 | MS.gene012996:CDS | 55.0% |
| !! | TTGACGGATTCGGCGATCTC+GGG | - | chr3.2:84513084-84513103 | None:intergenic | 55.0% |
| AGCTGCAACATTGGCGAGGG+AGG | + | chr3.2:84515198-84515217 | MS.gene012996:intron | 60.0% | |
| AGTGGCACGAATCGGAGTGG+TGG | - | chr3.2:84513037-84513056 | None:intergenic | 60.0% | |
| ATGTGCGAGGAGCTCTGCTC+TGG | + | chr3.2:84513736-84513755 | MS.gene012996:intron | 60.0% | |
| CGGGACCAATACCATCACCG+GGG | - | chr3.2:84513065-84513084 | None:intergenic | 60.0% | |
| TCCCTCGCCAATGTTGCAGC+TGG | - | chr3.2:84515199-84515218 | None:intergenic | 60.0% | |
| TGTGCGAGGAGCTCTGCTCT+GGG | + | chr3.2:84513737-84513756 | MS.gene012996:intron | 60.0% | |
| ! | CGGAGTGGTGGAGGAAGAGA+AGG | - | chr3.2:84513025-84513044 | None:intergenic | 60.0% |
| ! | GAGGAGCTCTGCTCTGGGTT+TGG | + | chr3.2:84513742-84513761 | MS.gene012996:intron | 60.0% |
| ! | GCCACTCTTTTCCCCGGTGA+TGG | + | chr3.2:84513051-84513070 | MS.gene012996:CDS | 60.0% |
| ! | GCTCTGGGTTTGGTTACGGG+GGG | + | chr3.2:84513752-84513771 | MS.gene012996:intron | 60.0% |
| GGCACGAATCGGAGTGGTGG+AGG | - | chr3.2:84513034-84513053 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 84512964 | 84515662 | 84512964 | ID=MS.gene012996 |
| chr3.2 | mRNA | 84512964 | 84515662 | 84512964 | ID=MS.gene012996.t1;Parent=MS.gene012996 |
| chr3.2 | exon | 84512964 | 84513107 | 84512964 | ID=MS.gene012996.t1.exon1;Parent=MS.gene012996.t1 |
| chr3.2 | CDS | 84512964 | 84513107 | 84512964 | ID=cds.MS.gene012996.t1;Parent=MS.gene012996.t1 |
| chr3.2 | exon | 84514166 | 84514486 | 84514166 | ID=MS.gene012996.t1.exon2;Parent=MS.gene012996.t1 |
| chr3.2 | CDS | 84514166 | 84514486 | 84514166 | ID=cds.MS.gene012996.t1;Parent=MS.gene012996.t1 |
| chr3.2 | exon | 84514568 | 84514729 | 84514568 | ID=MS.gene012996.t1.exon3;Parent=MS.gene012996.t1 |
| chr3.2 | CDS | 84514568 | 84514729 | 84514568 | ID=cds.MS.gene012996.t1;Parent=MS.gene012996.t1 |
| chr3.2 | exon | 84514826 | 84514900 | 84514826 | ID=MS.gene012996.t1.exon4;Parent=MS.gene012996.t1 |
| chr3.2 | CDS | 84514826 | 84514900 | 84514826 | ID=cds.MS.gene012996.t1;Parent=MS.gene012996.t1 |
| chr3.2 | exon | 84515008 | 84515117 | 84515008 | ID=MS.gene012996.t1.exon5;Parent=MS.gene012996.t1 |
| chr3.2 | CDS | 84515008 | 84515117 | 84515008 | ID=cds.MS.gene012996.t1;Parent=MS.gene012996.t1 |
| chr3.2 | exon | 84515200 | 84515272 | 84515200 | ID=MS.gene012996.t1.exon6;Parent=MS.gene012996.t1 |
| chr3.2 | CDS | 84515200 | 84515272 | 84515200 | ID=cds.MS.gene012996.t1;Parent=MS.gene012996.t1 |
| chr3.2 | exon | 84515471 | 84515662 | 84515471 | ID=MS.gene012996.t1.exon7;Parent=MS.gene012996.t1 |
| chr3.2 | CDS | 84515471 | 84515662 | 84515471 | ID=cds.MS.gene012996.t1;Parent=MS.gene012996.t1 |
| Gene Sequence |
| Protein sequence |
