Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48488.t1 | GAU44317.1 | 98 | 358 | 7 | 0 | 1 | 358 | 1 | 358 | 5.50E-199 | 703.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48488.t1 | Q945K7 | 84.9 | 372 | 42 | 1 | 1 | 358 | 3 | 374 | 2.7e-178 | 625.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48488.t1 | A0A2Z6PIA6 | 98.0 | 358 | 7 | 0 | 1 | 358 | 1 | 358 | 4.0e-199 | 703.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48488.t1 | MTR_3g101470 | 96.927 | 358 | 6 | 1 | 1 | 358 | 1 | 353 | 0.0 | 715 |
MS.gene48488.t1 | MTR_1g064070 | 93.575 | 358 | 23 | 0 | 1 | 358 | 1 | 358 | 0.0 | 701 |
MS.gene48488.t1 | MTR_8g074030 | 48.774 | 367 | 170 | 4 | 5 | 358 | 9 | 370 | 5.14e-119 | 349 |
MS.gene48488.t1 | MTR_5g023740 | 47.268 | 366 | 179 | 4 | 2 | 358 | 6 | 366 | 5.64e-116 | 341 |
MS.gene48488.t1 | MTR_8g074030 | 48.229 | 367 | 168 | 5 | 5 | 358 | 9 | 366 | 5.85e-115 | 338 |
MS.gene48488.t1 | MTR_5g023740 | 46.721 | 366 | 177 | 5 | 2 | 358 | 6 | 362 | 7.55e-112 | 330 |
MS.gene48488.t1 | MTR_5g023740 | 47.766 | 291 | 135 | 4 | 2 | 286 | 6 | 285 | 9.76e-94 | 281 |
MS.gene48488.t1 | MTR_5g023740 | 49.091 | 275 | 129 | 3 | 2 | 270 | 6 | 275 | 2.71e-93 | 280 |
MS.gene48488.t1 | MTR_5g023740 | 48.364 | 275 | 127 | 4 | 2 | 270 | 6 | 271 | 2.34e-89 | 270 |
MS.gene48488.t1 | MTR_2g104610 | 31.105 | 344 | 207 | 10 | 23 | 341 | 36 | 374 | 3.83e-43 | 154 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48488.t1 | AT5G03290 | 84.946 | 372 | 42 | 1 | 1 | 358 | 3 | 374 | 0.0 | 645 |
MS.gene48488.t1 | AT3G09810 | 83.768 | 345 | 56 | 0 | 14 | 358 | 30 | 374 | 0.0 | 613 |
MS.gene48488.t1 | AT4G35260 | 50.746 | 335 | 157 | 2 | 27 | 358 | 37 | 366 | 2.91e-116 | 342 |
MS.gene48488.t1 | AT2G17130 | 47.839 | 347 | 165 | 4 | 18 | 358 | 30 | 366 | 2.19e-112 | 332 |
MS.gene48488.t1 | AT4G35650 | 47.838 | 370 | 170 | 6 | 7 | 358 | 3 | 367 | 1.91e-111 | 330 |
MS.gene48488.t1 | AT2G17130 | 47.262 | 347 | 163 | 5 | 18 | 358 | 30 | 362 | 1.42e-108 | 322 |
MS.gene48488.t1 | AT1G32480 | 42.081 | 221 | 115 | 4 | 34 | 252 | 4 | 213 | 2.44e-56 | 183 |
MS.gene48488.t1 | AT1G31180 | 30.636 | 346 | 210 | 10 | 23 | 341 | 35 | 377 | 1.75e-43 | 155 |
MS.gene48488.t1 | AT1G31180 | 30.636 | 346 | 210 | 10 | 23 | 341 | 50 | 392 | 3.60e-43 | 155 |
MS.gene48488.t1 | AT5G14200 | 31.138 | 334 | 204 | 9 | 31 | 341 | 50 | 380 | 8.66e-43 | 153 |
MS.gene48488.t1 | AT5G14200 | 31.138 | 334 | 204 | 9 | 31 | 341 | 50 | 380 | 1.14e-42 | 153 |
MS.gene48488.t1 | AT1G80560 | 30.383 | 339 | 200 | 9 | 31 | 341 | 46 | 376 | 5.95e-41 | 148 |
MS.gene48488.t1 | AT5G14200 | 26.957 | 230 | 144 | 7 | 32 | 239 | 51 | 278 | 1.85e-13 | 70.5 |
Find 88 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTAAGAAAGCTCTGTGTTCT+AGG | 0.277010 | 3.1:-80570594 | None:intergenic |
CGACCTTGTTACAGCCTTCC+TGG | 0.291185 | 3.1:+80570747 | MS.gene48488:CDS |
CGTTACCATGTTGCGCCATT+TGG | 0.298167 | 3.1:+80571870 | MS.gene48488:CDS |
GCTGGCTTGATTGGAGGATT+AGG | 0.316432 | 3.1:+80571448 | MS.gene48488:CDS |
AGTGACCTGTTTGACGGATT+CGG | 0.336125 | 3.1:-80569440 | None:intergenic |
TAGAATCGGTAAGAAGAAAC+AGG | 0.350254 | 3.1:+80570628 | MS.gene48488:CDS |
GACCTTTGTGCTGGCTTGAT+TGG | 0.351034 | 3.1:+80571439 | MS.gene48488:CDS |
CTCACCTTCCCAGCAATATC+AGG | 0.370076 | 3.1:-80571620 | None:intergenic |
GGCTCAGCACCTGATATTGC+TGG | 0.370773 | 3.1:+80571611 | MS.gene48488:CDS |
TTGGTGATGCCTAACCTTTA+TGG | 0.384596 | 3.1:+80571403 | MS.gene48488:CDS |
TAATGCTCTTCCCATTCAAT+TGG | 0.399010 | 3.1:-80570552 | None:intergenic |
GGGCCAATGGCTACTCCTAT+TGG | 0.403413 | 3.1:+80570663 | MS.gene48488:CDS |
GAATACTATCTGCTTTATCA+TGG | 0.416549 | 3.1:-80571897 | None:intergenic |
GAACGATGCCCTTTGCCAAT+AGG | 0.418274 | 3.1:-80570678 | None:intergenic |
GAACACAGAGCTTTCTTACA+TGG | 0.419020 | 3.1:+80570598 | MS.gene48488:CDS |
CTTTGTGCTGGCTTGATTGG+AGG | 0.426373 | 3.1:+80571442 | MS.gene48488:CDS |
CTGCTGAAGTTCCAATTGAA+TGG | 0.426984 | 3.1:+80570541 | MS.gene48488:CDS |
CGCTGATTATATCACCATAA+AGG | 0.430909 | 3.1:-80571417 | None:intergenic |
ACTTCCTCATATGCTATCTC+TGG | 0.456407 | 3.1:-80571218 | None:intergenic |
TTTGACGGATTCGGCGATCT+CGG | 0.461264 | 3.1:-80569431 | None:intergenic |
GATCGCCGAATCCGTCAAAC+AGG | 0.465664 | 3.1:+80569435 | MS.gene48488:CDS |
TGCTGAAGTTCCAATTGAAT+GGG | 0.465872 | 3.1:+80570542 | MS.gene48488:CDS |
AGAAACAGGGTTGGCTTGAA+AGG | 0.465983 | 3.1:+80570642 | MS.gene48488:CDS |
AAGAGAAGTGACCTGTTTGA+CGG | 0.467875 | 3.1:-80569446 | None:intergenic |
TACATGGGAAAGTTTAGAAT+CGG | 0.469643 | 3.1:+80570614 | MS.gene48488:CDS |
CAATTGGAACTTCAGCAGCT+TGG | 0.477455 | 3.1:-80570536 | None:intergenic |
CCTCTCTCTTCCATGTGCCT+TGG | 0.478415 | 3.1:-80571015 | None:intergenic |
CAGATACTTCGACGAACTCT+CGG | 0.482540 | 3.1:+80569322 | MS.gene48488:CDS |
ATATCCAGAGATAGCATATG+AGG | 0.484439 | 3.1:+80571214 | MS.gene48488:CDS |
TTCCTTCTGCAATTGTGTTG+AGG | 0.484815 | 3.1:-80571930 | None:intergenic |
ATAATCAGCGACCTTTGTGC+TGG | 0.491910 | 3.1:+80571430 | MS.gene48488:CDS |
TTGACGGATTCGGCGATCTC+GGG | 0.494209 | 3.1:-80569430 | None:intergenic |
AAGTACCGAACTGCTGATCT+TGG | 0.507542 | 3.1:+80571952 | MS.gene48488:CDS |
GAGGATTAGGCTTGACACCC+AGG | 0.514136 | 3.1:+80571461 | MS.gene48488:CDS |
GGCACGAATCGGAGTGGTGG+AGG | 0.523029 | 3.1:-80569380 | None:intergenic |
TTCTGCAATTGTGTTGAGGA+TGG | 0.523916 | 3.1:-80571926 | None:intergenic |
CTCGGGACCAATACCATCAC+CGG | 0.527524 | 3.1:-80569413 | None:intergenic |
GGGAAAAGAGTGGCACGAAT+CGG | 0.530220 | 3.1:-80569391 | None:intergenic |
GCACTTGCTGAGGCTGTACA+TGG | 0.533721 | 3.1:+80571590 | MS.gene48488:CDS |
CTTTATCATGGAGATCCAAA+TGG | 0.536914 | 3.1:-80571885 | None:intergenic |
GTGGAGGAAGAGAAGGACCT+AGG | 0.536981 | 3.1:-80569364 | None:intergenic |
TTTCACTATGCCAAGGCACA+TGG | 0.540596 | 3.1:+80571005 | MS.gene48488:CDS |
CGGAGTGGTGGAGGAAGAGA+AGG | 0.541340 | 3.1:-80569371 | None:intergenic |
TAAGAAAGCTCTGTGTTCTA+GGG | 0.543527 | 3.1:-80570593 | None:intergenic |
TGGCTACTCCTATTGGCAAA+GGG | 0.544231 | 3.1:+80570670 | MS.gene48488:CDS |
TACCGAACTGCTGATCTTGG+TGG | 0.549369 | 3.1:+80571955 | MS.gene48488:CDS |
GAAACAGGGTTGGCTTGAAA+GGG | 0.549689 | 3.1:+80570643 | MS.gene48488:CDS |
AGCTGCAACATTGGCGAGGG+AGG | 0.553258 | 3.1:+80571563 | MS.gene48488:intron |
AGCACCTGATATTGCTGGGA+AGG | 0.553390 | 3.1:+80571616 | MS.gene48488:CDS |
TGCCACCAAGATCAGCAGTT+CGG | 0.556271 | 3.1:-80571957 | None:intergenic |
GTACAGTGGACTTGAACATC+AGG | 0.556840 | 3.1:+80570830 | MS.gene48488:CDS |
CATTGACAATTGCTGCATGA+TGG | 0.561036 | 3.1:+80571244 | MS.gene48488:CDS |
ATGGCTACTCCTATTGGCAA+AGG | 0.563155 | 3.1:+80570669 | MS.gene48488:CDS |
ATTATATCACCATAAAGGTT+AGG | 0.563728 | 3.1:-80571412 | None:intergenic |
TTTGGGTTATAGGTTGTGAG+GGG | 0.565156 | 3.1:+80570921 | MS.gene48488:intron |
TCCAGCTGCAACATTGGCGA+GGG | 0.568702 | 3.1:+80571560 | MS.gene48488:intron |
AACACAGAGCTTTCTTACAT+GGG | 0.574926 | 3.1:+80570599 | MS.gene48488:CDS |
GAACTCAACAGCAAAGCAGT+TGG | 0.576627 | 3.1:-80571847 | None:intergenic |
GCTCAGCACCTGATATTGCT+GGG | 0.581328 | 3.1:+80571612 | MS.gene48488:CDS |
TCGGTAAGAAGAAACAGGGT+TGG | 0.583355 | 3.1:+80570633 | MS.gene48488:CDS |
CAAATGGCGCAACATGGTAA+CGG | 0.584966 | 3.1:-80571869 | None:intergenic |
ACCTAGGGTTTGACAGATAG+CGG | 0.587539 | 3.1:-80569348 | None:intergenic |
AGTGGCACGAATCGGAGTGG+TGG | 0.588339 | 3.1:-80569383 | None:intergenic |
TTCCAGCTGCAACATTGGCG+AGG | 0.595214 | 3.1:+80571559 | MS.gene48488:intron |
TTGCCAATAGGAGTAGCCAT+TGG | 0.595229 | 3.1:-80570666 | None:intergenic |
GGTTGGCTTGAAAGGGCCAA+TGG | 0.602286 | 3.1:+80570650 | MS.gene48488:CDS |
GGGAGGTATTGCACTTGCTG+AGG | 0.604265 | 3.1:+80571580 | MS.gene48488:CDS |
GCCGCTATCTGTCAAACCCT+AGG | 0.605814 | 3.1:+80569347 | MS.gene48488:CDS |
ATCCTCAACACAATTGCAGA+AGG | 0.609103 | 3.1:+80571928 | MS.gene48488:CDS |
CTGTGTTCTAGGGTCAATTG+TGG | 0.611038 | 3.1:-80570583 | None:intergenic |
TCGGGACCAATACCATCACC+GGG | 0.615254 | 3.1:-80569412 | None:intergenic |
TGGAGGAAGAGAAGGACCTA+GGG | 0.615545 | 3.1:-80569363 | None:intergenic |
CCAAGGCACATGGAAGAGAG+AGG | 0.619352 | 3.1:+80571015 | MS.gene48488:CDS |
GAGATCCAAATGGCGCAACA+TGG | 0.630253 | 3.1:-80571875 | None:intergenic |
AACATTATGCAAAAGACTGA+CGG | 0.632176 | 3.1:+80571059 | MS.gene48488:CDS |
AATGGGAAGAGCATTACGTA+GGG | 0.633880 | 3.1:+80570559 | MS.gene48488:CDS |
CAAGGCACATGGAAGAGAGA+GGG | 0.638399 | 3.1:+80571016 | MS.gene48488:CDS |
CAGGAAGGCTGTAACAAGGT+CGG | 0.645409 | 3.1:-80570746 | None:intergenic |
TAGCCAGGAAGGCTGTAACA+AGG | 0.645729 | 3.1:-80570750 | None:intergenic |
AATACAGAAGGCGAGTACAG+TGG | 0.649635 | 3.1:+80570816 | MS.gene48488:CDS |
ACAATCCGTGAAAATACAGA+AGG | 0.651487 | 3.1:+80570804 | MS.gene48488:CDS |
GAATGGGAAGAGCATTACGT+AGG | 0.653825 | 3.1:+80570558 | MS.gene48488:CDS |
ACCATCACCGGGGAAAAGAG+TGG | 0.655812 | 3.1:-80569401 | None:intergenic |
ACGTCAAGCAAGTTTACGAG+TGG | 0.657438 | 3.1:+80570971 | MS.gene48488:CDS |
AGAATCGGTAAGAAGAAACA+GGG | 0.666965 | 3.1:+80570629 | MS.gene48488:CDS |
AAGAGTGGCACGAATCGGAG+TGG | 0.687099 | 3.1:-80569386 | None:intergenic |
CTCCAATCAAGCCAGCACAA+AGG | 0.693100 | 3.1:-80571441 | None:intergenic |
CGGGACCAATACCATCACCG+GGG | 0.794777 | 3.1:-80569411 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAATTATAAAATTAAATTT+GGG | - | chr3.1:80569573-80569592 | None:intergenic | 0.0% |
!! | TATAATTATAAAATTAAATT+TGG | - | chr3.1:80569574-80569593 | None:intergenic | 0.0% |
!!! | TTAATTTATTTAGCATTTTT+GGG | + | chr3.1:80570904-80570923 | MS.gene48488:intron | 10.0% |
!!! | TTTAATTTATTTAGCATTTT+TGG | + | chr3.1:80570903-80570922 | MS.gene48488:intron | 10.0% |
!!! | TTTGTTTTGTTTTAAATTTT+GGG | + | chr3.1:80571487-80571506 | MS.gene48488:intron | 10.0% |
!!! | TTTTGTTTTGTTTTAAATTT+TGG | + | chr3.1:80571486-80571505 | MS.gene48488:intron | 10.0% |
!! | AACAAGTGTAATTTAATTAA+AGG | - | chr3.1:80571796-80571815 | None:intergenic | 15.0% |
!!! | TTTTTTAAACTGATACAAAT+GGG | + | chr3.1:80569696-80569715 | MS.gene48488:intron | 15.0% |
!!! | TTTTTTTAAACTGATACAAA+TGG | + | chr3.1:80569695-80569714 | MS.gene48488:intron | 15.0% |
!! | AAATTAAATTGATCAGAACT+TGG | - | chr3.1:80570891-80570910 | None:intergenic | 20.0% |
!! | GTCAATAATTTAAAAGAGAA+AGG | + | chr3.1:80570006-80570025 | MS.gene48488:intron | 20.0% |
!! | TAAAACAAAACAAAAAACCT+GGG | - | chr3.1:80571481-80571500 | None:intergenic | 20.0% |
!! | TAAATTTGGGAAAACATATT+TGG | - | chr3.1:80569560-80569579 | None:intergenic | 20.0% |
!! | TTAAAACAAAACAAAAAACC+TGG | - | chr3.1:80571482-80571501 | None:intergenic | 20.0% |
!!! | ACAAGCATAAAGTTTTAAAA+CGG | - | chr3.1:80571676-80571695 | None:intergenic | 20.0% |
!!! | GTTTTAAAACGGATAATATA+TGG | - | chr3.1:80571665-80571684 | None:intergenic | 20.0% |
!!! | TTTTTACTATTGCTACAATT+AGG | + | chr3.1:80570509-80570528 | MS.gene48488:intron | 20.0% |
! | AAAATGAACCAATATACTGA+TGG | - | chr3.1:80570304-80570323 | None:intergenic | 25.0% |
! | AAATAAGATAACAGCAAACA+AGG | - | chr3.1:80569615-80569634 | None:intergenic | 25.0% |
! | AAATGAACCAATATACTGAT+GGG | - | chr3.1:80570303-80570322 | None:intergenic | 25.0% |
! | AATGACAAATGTTAGTATGT+TGG | + | chr3.1:80570159-80570178 | MS.gene48488:intron | 25.0% |
! | ATTATATCACCATAAAGGTT+AGG | - | chr3.1:80571415-80571434 | None:intergenic | 25.0% |
! | TATAAGCTCAAGTTCAAATT+AGG | - | chr3.1:80569727-80569746 | None:intergenic | 25.0% |
!! | TAAGTTCTTTTCTTAGAGTA+AGG | - | chr3.1:80570710-80570729 | None:intergenic | 25.0% |
!!! | AAACTTTATGCTTGTTTTCA+TGG | + | chr3.1:80571681-80571700 | MS.gene48488:intron | 25.0% |
!!! | ATTGAGACAGAGTATTTTAT+AGG | - | chr3.1:80571119-80571138 | None:intergenic | 25.0% |
!!! | ATTTAGCATTTTTGGGTTAT+AGG | + | chr3.1:80570911-80570930 | MS.gene48488:intron | 25.0% |
!!! | TGCTTTGTTTGTTTCTTATT+GGG | + | chr3.1:80570426-80570445 | MS.gene48488:intron | 25.0% |
!!! | TTGCTTTGTTTGTTTCTTAT+TGG | + | chr3.1:80570425-80570444 | MS.gene48488:intron | 25.0% |
AAATGTACTGTAATCATCCA+TGG | + | chr3.1:80569786-80569805 | MS.gene48488:intron | 30.0% | |
AACATTATGCAAAAGACTGA+CGG | + | chr3.1:80571059-80571078 | MS.gene48488:CDS | 30.0% | |
AAGTTTCTTAGTTCATCTGA+AGG | - | chr3.1:80571753-80571772 | None:intergenic | 30.0% | |
ATGGATGATTACAGTACATT+TGG | - | chr3.1:80569787-80569806 | None:intergenic | 30.0% | |
CAAACAAAGCAAGAGATATA+AGG | - | chr3.1:80570417-80570436 | None:intergenic | 30.0% | |
CTAAGAGATTAAAGGATTGA+AGG | - | chr3.1:80570238-80570257 | None:intergenic | 30.0% | |
GAATACTATCTGCTTTATCA+TGG | - | chr3.1:80571900-80571919 | None:intergenic | 30.0% | |
TCTTTCTTTGTCAATTGTCA+TGG | + | chr3.1:80570329-80570348 | MS.gene48488:intron | 30.0% | |
! | TACATGGGAAAGTTTAGAAT+CGG | + | chr3.1:80570614-80570633 | MS.gene48488:CDS | 30.0% |
! | TTGCAATTGACTTAAACCTT+TGG | + | chr3.1:80569641-80569660 | MS.gene48488:intron | 30.0% |
!! | AAATTACACTTGTTTTCCTG+TGG | + | chr3.1:80571802-80571821 | MS.gene48488:intron | 30.0% |
!! | TTAACTTGATGAGTTGATGT+AGG | + | chr3.1:80571276-80571295 | MS.gene48488:intron | 30.0% |
AAACCTATGAACATAACGAC+AGG | - | chr3.1:80569761-80569780 | None:intergenic | 35.0% | |
AACACAGAGCTTTCTTACAT+GGG | + | chr3.1:80570599-80570618 | MS.gene48488:CDS | 35.0% | |
ACAATCCGTGAAAATACAGA+AGG | + | chr3.1:80570804-80570823 | MS.gene48488:CDS | 35.0% | |
AGAATCGGTAAGAAGAAACA+GGG | + | chr3.1:80570629-80570648 | MS.gene48488:CDS | 35.0% | |
AGTTAGGTCTGTTTGGTTAA+TGG | + | chr3.1:80569854-80569873 | MS.gene48488:intron | 35.0% | |
ATATCCAGAGATAGCATATG+AGG | + | chr3.1:80571214-80571233 | MS.gene48488:CDS | 35.0% | |
ATGGTTCAAAATACAGCATC+TGG | + | chr3.1:80569805-80569824 | MS.gene48488:intron | 35.0% | |
ATTGAAGGAGTAAATGTCCA+GGG | - | chr3.1:80570223-80570242 | None:intergenic | 35.0% | |
CAAATTCTGCATAAAACCAC+AGG | - | chr3.1:80571821-80571840 | None:intergenic | 35.0% | |
CCAACGAAAGAAAACAGAAT+GGG | - | chr3.1:80570277-80570296 | None:intergenic | 35.0% | |
CTTTATCATGGAGATCCAAA+TGG | - | chr3.1:80571888-80571907 | None:intergenic | 35.0% | |
GATACTATAGTTTATGTGCG+AGG | + | chr3.1:80570084-80570103 | MS.gene48488:intron | 35.0% | |
GATGATTACAGTACATTTGG+AGG | - | chr3.1:80569784-80569803 | None:intergenic | 35.0% | |
TAAGAAAGCTCTGTGTTCTA+GGG | - | chr3.1:80570596-80570615 | None:intergenic | 35.0% | |
TAATGCTCTTCCCATTCAAT+TGG | - | chr3.1:80570555-80570574 | None:intergenic | 35.0% | |
TAGAATCGGTAAGAAGAAAC+AGG | + | chr3.1:80570628-80570647 | MS.gene48488:CDS | 35.0% | |
TGCTGAAGTTCCAATTGAAT+GGG | + | chr3.1:80570542-80570561 | MS.gene48488:CDS | 35.0% | |
TGGTTGTGCTAAGAGATTAA+AGG | - | chr3.1:80570246-80570265 | None:intergenic | 35.0% | |
TTTGTCAATTGTCATGGATG+TGG | + | chr3.1:80570335-80570354 | MS.gene48488:intron | 35.0% | |
! | ACCAATACATCAAAAAGTGC+AGG | - | chr3.1:80571388-80571407 | None:intergenic | 35.0% |
! | CCATTCTGTTTTCTTTCGTT+GGG | + | chr3.1:80570275-80570294 | MS.gene48488:intron | 35.0% |
! | CGCTGATTATATCACCATAA+AGG | - | chr3.1:80571420-80571439 | None:intergenic | 35.0% |
! | GTCAGTCTTTTGCATAATGT+TGG | - | chr3.1:80571060-80571079 | None:intergenic | 35.0% |
! | TTAGTATTTTCTCCATTGCC+AGG | + | chr3.1:80570190-80570209 | MS.gene48488:intron | 35.0% |
!! | AGATGCTGTATTTTGAACCA+TGG | - | chr3.1:80569806-80569825 | None:intergenic | 35.0% |
!! | GATATTTTTCAGCAACCTCA+CGG | - | chr3.1:80571199-80571218 | None:intergenic | 35.0% |
!! | TCCTGCACTTTTTGATGTAT+TGG | + | chr3.1:80571384-80571403 | MS.gene48488:CDS | 35.0% |
!!! | CTGTGGTTTTATGCAGAATT+TGG | + | chr3.1:80571819-80571838 | MS.gene48488:intron | 35.0% |
!!! | GACACTAGTTTTATCTCCAA+AGG | - | chr3.1:80569660-80569679 | None:intergenic | 35.0% |
!!! | TTATTTTTAGTGTTGCCGTG+AGG | + | chr3.1:80571181-80571200 | MS.gene48488:intron | 35.0% |
!!! | TTTTGGGTTATAGGTTGTGA+GGG | + | chr3.1:80570920-80570939 | MS.gene48488:intron | 35.0% |
!!! | TTTTTGGGTTATAGGTTGTG+AGG | + | chr3.1:80570919-80570938 | MS.gene48488:intron | 35.0% |
AAAATGACACATGCCATGAC+TGG | - | chr3.1:80569507-80569526 | None:intergenic | 40.0% | |
AAGAGAAGTGACCTGTTTGA+CGG | - | chr3.1:80569449-80569468 | None:intergenic | 40.0% | |
AATACAGCATCTGGTGATAG+TGG | + | chr3.1:80569814-80569833 | MS.gene48488:intron | 40.0% | |
AATCCTAGGGTATGTTTGGA+TGG | - | chr3.1:80570047-80570066 | None:intergenic | 40.0% | |
AATGGAGGAGAGGATTTAGA+AGG | + | chr3.1:80569872-80569891 | MS.gene48488:intron | 40.0% | |
ACGAGTAAGTTAGGTCTGTT+TGG | + | chr3.1:80569847-80569866 | MS.gene48488:intron | 40.0% | |
ACTTCCTCATATGCTATCTC+TGG | - | chr3.1:80571221-80571240 | None:intergenic | 40.0% | |
AGACCTGTCGTTATGTTCAT+AGG | + | chr3.1:80569755-80569774 | MS.gene48488:intron | 40.0% | |
ATCCTCAACACAATTGCAGA+AGG | + | chr3.1:80571928-80571947 | MS.gene48488:CDS | 40.0% | |
ATGGAGGAGAGGATTTAGAA+GGG | + | chr3.1:80569873-80569892 | MS.gene48488:intron | 40.0% | |
CAGGTCACTTCTCTTTCAAT+TGG | + | chr3.1:80569454-80569473 | MS.gene48488:intron | 40.0% | |
CATTGACAATTGCTGCATGA+TGG | + | chr3.1:80571244-80571263 | MS.gene48488:CDS | 40.0% | |
CCCAACGAAAGAAAACAGAA+TGG | - | chr3.1:80570278-80570297 | None:intergenic | 40.0% | |
CTGCTGAAGTTCCAATTGAA+TGG | + | chr3.1:80570541-80570560 | MS.gene48488:CDS | 40.0% | |
GAACACAGAGCTTTCTTACA+TGG | + | chr3.1:80570598-80570617 | MS.gene48488:CDS | 40.0% | |
GATTGAAGGAGTAAATGTCC+AGG | - | chr3.1:80570224-80570243 | None:intergenic | 40.0% | |
GTAAGAAAGCTCTGTGTTCT+AGG | - | chr3.1:80570597-80570616 | None:intergenic | 40.0% | |
TAGGTCTGTTTGGTTAATGG+AGG | + | chr3.1:80569857-80569876 | MS.gene48488:intron | 40.0% | |
TTCCTTCTGCAATTGTGTTG+AGG | - | chr3.1:80571933-80571952 | None:intergenic | 40.0% | |
TTCTGCAATTGTGTTGAGGA+TGG | - | chr3.1:80571929-80571948 | None:intergenic | 40.0% | |
TTGCTGCATGATGGTAATCT+TGG | + | chr3.1:80571253-80571272 | MS.gene48488:intron | 40.0% | |
TTGGGTTCCCATCAGTATAT+TGG | + | chr3.1:80570293-80570312 | MS.gene48488:intron | 40.0% | |
! | ACTCGCCTTCTGTATTTTCA+CGG | - | chr3.1:80570812-80570831 | None:intergenic | 40.0% |
! | ATCTTTTCCAGCTGCAACAT+TGG | + | chr3.1:80571554-80571573 | MS.gene48488:intron | 40.0% |
! | CCCATTCTGTTTTCTTTCGT+TGG | + | chr3.1:80570274-80570293 | MS.gene48488:intron | 40.0% |
! | GTATGCTTTTCACTATGCCA+AGG | + | chr3.1:80570998-80571017 | MS.gene48488:CDS | 40.0% |
! | GTTTTCTTCGAAACCAGTCA+TGG | + | chr3.1:80569491-80569510 | MS.gene48488:intron | 40.0% |
! | TTTGGGTTATAGGTTGTGAG+GGG | + | chr3.1:80570921-80570940 | MS.gene48488:intron | 40.0% |
!! | AATGGGAAGAGCATTACGTA+GGG | + | chr3.1:80570559-80570578 | MS.gene48488:CDS | 40.0% |
!! | TCATATCGAGTTTTGTAGCC+AGG | - | chr3.1:80570768-80570787 | None:intergenic | 40.0% |
!! | TTGGTGATGCCTAACCTTTA+TGG | + | chr3.1:80571403-80571422 | MS.gene48488:CDS | 40.0% |
AAACAGAATGGGAGCTCACT+TGG | - | chr3.1:80570266-80570285 | None:intergenic | 45.0% | |
AAGGTTGTCCTTGATGCAAG+TGG | - | chr3.1:80571734-80571753 | None:intergenic | 45.0% | |
AATACAGAAGGCGAGTACAG+TGG | + | chr3.1:80570816-80570835 | MS.gene48488:CDS | 45.0% | |
AATGTCCAGGGTTTGAATCC+TGG | - | chr3.1:80570211-80570230 | None:intergenic | 45.0% | |
ACCCAATAGCAGCAATCCTA+GGG | - | chr3.1:80570060-80570079 | None:intergenic | 45.0% | |
ACCCTAGGATTGCTGCTATT+GGG | + | chr3.1:80570056-80570075 | MS.gene48488:intron | 45.0% | |
ACCTAGGGTTTGACAGATAG+CGG | - | chr3.1:80569351-80569370 | None:intergenic | 45.0% | |
ACGTCAAGCAAGTTTACGAG+TGG | + | chr3.1:80570971-80570990 | MS.gene48488:CDS | 45.0% | |
ATAATCAGCGACCTTTGTGC+TGG | + | chr3.1:80571430-80571449 | MS.gene48488:CDS | 45.0% | |
ATGGCTACTCCTATTGGCAA+AGG | + | chr3.1:80570669-80570688 | MS.gene48488:CDS | 45.0% | |
CAAATGGCGCAACATGGTAA+CGG | - | chr3.1:80571872-80571891 | None:intergenic | 45.0% | |
CAATTGGAACTTCAGCAGCT+TGG | - | chr3.1:80570539-80570558 | None:intergenic | 45.0% | |
CAGATACTTCGACGAACTCT+CGG | + | chr3.1:80569322-80569341 | MS.gene48488:CDS | 45.0% | |
CAGCAATCCTAGGGTATGTT+TGG | - | chr3.1:80570051-80570070 | None:intergenic | 45.0% | |
CTAGGGTATGTTTGGATGGA+GGG | - | chr3.1:80570043-80570062 | None:intergenic | 45.0% | |
CTGTTTGGTTAATGGAGGAG+AGG | + | chr3.1:80569862-80569881 | MS.gene48488:intron | 45.0% | |
GAACTCAACAGCAAAGCAGT+TGG | - | chr3.1:80571850-80571869 | None:intergenic | 45.0% | |
GAATGTGTTAGCGAACCTTC+AGG | - | chr3.1:80571091-80571110 | None:intergenic | 45.0% | |
GATTCTTCACAAGCTGTGGA+TGG | - | chr3.1:80571366-80571385 | None:intergenic | 45.0% | |
TACCCTAGGATTGCTGCTAT+TGG | + | chr3.1:80570055-80570074 | MS.gene48488:intron | 45.0% | |
TAGGGTATGTTTGGATGGAG+GGG | - | chr3.1:80570042-80570061 | None:intergenic | 45.0% | |
TCGGTAAGAAGAAACAGGGT+TGG | + | chr3.1:80570633-80570652 | MS.gene48488:CDS | 45.0% | |
TGGCTACTCCTATTGGCAAA+GGG | + | chr3.1:80570670-80570689 | MS.gene48488:CDS | 45.0% | |
TTGCCAATAGGAGTAGCCAT+TGG | - | chr3.1:80570669-80570688 | None:intergenic | 45.0% | |
TTTCACTATGCCAAGGCACA+TGG | + | chr3.1:80571005-80571024 | MS.gene48488:CDS | 45.0% | |
! | GTACAGTGGACTTGAACATC+AGG | + | chr3.1:80570830-80570849 | MS.gene48488:CDS | 45.0% |
!! | AAGTACCGAACTGCTGATCT+TGG | + | chr3.1:80571952-80571971 | MS.gene48488:CDS | 45.0% |
!! | AGAAACAGGGTTGGCTTGAA+AGG | + | chr3.1:80570642-80570661 | MS.gene48488:CDS | 45.0% |
!! | AGTGACCTGTTTGACGGATT+CGG | - | chr3.1:80569443-80569462 | None:intergenic | 45.0% |
!! | ATCGAGTTTTGTAGCCAGGA+AGG | - | chr3.1:80570764-80570783 | None:intergenic | 45.0% |
!! | CTGTGTTCTAGGGTCAATTG+TGG | - | chr3.1:80570586-80570605 | None:intergenic | 45.0% |
!! | GAAACAGGGTTGGCTTGAAA+GGG | + | chr3.1:80570643-80570662 | MS.gene48488:CDS | 45.0% |
!! | GAATGGGAAGAGCATTACGT+AGG | + | chr3.1:80570558-80570577 | MS.gene48488:CDS | 45.0% |
AGCACCTGATATTGCTGGGA+AGG | + | chr3.1:80571616-80571635 | MS.gene48488:CDS | 50.0% | |
CAAGGCACATGGAAGAGAGA+GGG | + | chr3.1:80571016-80571035 | MS.gene48488:CDS | 50.0% | |
CACCCAATAGCAGCAATCCT+AGG | - | chr3.1:80570061-80570080 | None:intergenic | 50.0% | |
CAGGAAGGCTGTAACAAGGT+CGG | - | chr3.1:80570749-80570768 | None:intergenic | 50.0% | |
CAGGGTTTGAATCCTGGCAA+TGG | - | chr3.1:80570205-80570224 | None:intergenic | 50.0% | |
CATTGCCAGGATTCAAACCC+TGG | + | chr3.1:80570203-80570222 | MS.gene48488:intron | 50.0% | |
CCTAGGGTATGTTTGGATGG+AGG | - | chr3.1:80570044-80570063 | None:intergenic | 50.0% | |
CCTCCATCCAAACATACCCT+AGG | + | chr3.1:80570041-80570060 | MS.gene48488:intron | 50.0% | |
CGTTACCATGTTGCGCCATT+TGG | + | chr3.1:80571870-80571889 | MS.gene48488:CDS | 50.0% | |
CTCACCTTCCCAGCAATATC+AGG | - | chr3.1:80571623-80571642 | None:intergenic | 50.0% | |
CTCCAATCAAGCCAGCACAA+AGG | - | chr3.1:80571444-80571463 | None:intergenic | 50.0% | |
CTTGTGCACCACTTGCATCA+AGG | + | chr3.1:80571723-80571742 | MS.gene48488:intron | 50.0% | |
GAACGATGCCCTTTGCCAAT+AGG | - | chr3.1:80570681-80570700 | None:intergenic | 50.0% | |
GAGATCCAAATGGCGCAACA+TGG | - | chr3.1:80571878-80571897 | None:intergenic | 50.0% | |
GCAGGATTCTTCACAAGCTG+TGG | - | chr3.1:80571370-80571389 | None:intergenic | 50.0% | |
GCTCAGCACCTGATATTGCT+GGG | + | chr3.1:80571612-80571631 | MS.gene48488:CDS | 50.0% | |
GGGAAAAGAGTGGCACGAAT+CGG | - | chr3.1:80569394-80569413 | None:intergenic | 50.0% | |
GTATGTTTGGATGGAGGGGA+GGG | - | chr3.1:80570038-80570057 | None:intergenic | 50.0% | |
GTGTGTGGGACGAGTAAGTT+AGG | + | chr3.1:80569838-80569857 | MS.gene48488:intron | 50.0% | |
TACCGAACTGCTGATCTTGG+TGG | + | chr3.1:80571955-80571974 | MS.gene48488:CDS | 50.0% | |
TAGCCAGGAAGGCTGTAACA+AGG | - | chr3.1:80570753-80570772 | None:intergenic | 50.0% | |
TATGTTTGGATGGAGGGGAG+GGG | - | chr3.1:80570037-80570056 | None:intergenic | 50.0% | |
TGCCACCAAGATCAGCAGTT+CGG | - | chr3.1:80571960-80571979 | None:intergenic | 50.0% | |
TGGAGGAAGAGAAGGACCTA+GGG | - | chr3.1:80569366-80569385 | None:intergenic | 50.0% | |
! | GACTGACGGTCTTTTCCTGA+AGG | + | chr3.1:80571073-80571092 | MS.gene48488:CDS | 50.0% |
! | GTCTGTTTTGCTGCTGAGAG+TGG | + | chr3.1:80570359-80570378 | MS.gene48488:intron | 50.0% |
!! | ATTCGTGCCACTCTTTTCCC+CGG | + | chr3.1:80569394-80569413 | MS.gene48488:CDS | 50.0% |
!! | CTGGTGATAGTGGTGTGTGT+GGG | + | chr3.1:80569824-80569843 | MS.gene48488:intron | 50.0% |
!! | CTTTGTGCTGGCTTGATTGG+AGG | + | chr3.1:80571442-80571461 | MS.gene48488:CDS | 50.0% |
!! | CTTTTCCCCGGTGATGGTAT+TGG | + | chr3.1:80569406-80569425 | MS.gene48488:CDS | 50.0% |
!! | GACCTTTGTGCTGGCTTGAT+TGG | + | chr3.1:80571439-80571458 | MS.gene48488:CDS | 50.0% |
!! | GCTGGCTTGATTGGAGGATT+AGG | + | chr3.1:80571448-80571467 | MS.gene48488:CDS | 50.0% |
!! | TCTGGTGATAGTGGTGTGTG+TGG | + | chr3.1:80569823-80569842 | MS.gene48488:intron | 50.0% |
!! | TTTGACGGATTCGGCGATCT+CGG | - | chr3.1:80569434-80569453 | None:intergenic | 50.0% |
AAGAGTGGCACGAATCGGAG+TGG | - | chr3.1:80569389-80569408 | None:intergenic | 55.0% | |
ACCATCACCGGGGAAAAGAG+TGG | - | chr3.1:80569404-80569423 | None:intergenic | 55.0% | |
ATGTTTGGATGGAGGGGAGG+GGG | - | chr3.1:80570036-80570055 | None:intergenic | 55.0% | |
ATTGCTGGGAAGGTGAGCTG+TGG | + | chr3.1:80571626-80571645 | MS.gene48488:intron | 55.0% | |
CCAAGGCACATGGAAGAGAG+AGG | + | chr3.1:80571015-80571034 | MS.gene48488:CDS | 55.0% | |
CCTCTCTCTTCCATGTGCCT+TGG | - | chr3.1:80571018-80571037 | None:intergenic | 55.0% | |
CGACCTTGTTACAGCCTTCC+TGG | + | chr3.1:80570747-80570766 | MS.gene48488:CDS | 55.0% | |
CTCGGGACCAATACCATCAC+CGG | - | chr3.1:80569416-80569435 | None:intergenic | 55.0% | |
GAGGATTAGGCTTGACACCC+AGG | + | chr3.1:80571461-80571480 | MS.gene48488:CDS | 55.0% | |
GATCGCCGAATCCGTCAAAC+AGG | + | chr3.1:80569435-80569454 | MS.gene48488:CDS | 55.0% | |
GCCGCTATCTGTCAAACCCT+AGG | + | chr3.1:80569347-80569366 | MS.gene48488:CDS | 55.0% | |
GGCTCAGCACCTGATATTGC+TGG | + | chr3.1:80571611-80571630 | MS.gene48488:CDS | 55.0% | |
GGGCCAATGGCTACTCCTAT+TGG | + | chr3.1:80570663-80570682 | MS.gene48488:CDS | 55.0% | |
GGTATGTTTGGATGGAGGGG+AGG | - | chr3.1:80570039-80570058 | None:intergenic | 55.0% | |
GTGGAGGAAGAGAAGGACCT+AGG | - | chr3.1:80569367-80569386 | None:intergenic | 55.0% | |
TCCAGCTGCAACATTGGCGA+GGG | + | chr3.1:80571560-80571579 | MS.gene48488:intron | 55.0% | |
TCGGGACCAATACCATCACC+GGG | - | chr3.1:80569415-80569434 | None:intergenic | 55.0% | |
TTCCAGCTGCAACATTGGCG+AGG | + | chr3.1:80571559-80571578 | MS.gene48488:intron | 55.0% | |
! | CTCTGCTCTGGGTTGGGTTA+CGG | + | chr3.1:80570109-80570128 | MS.gene48488:intron | 55.0% |
! | GCACTTGCTGAGGCTGTACA+TGG | + | chr3.1:80571590-80571609 | MS.gene48488:CDS | 55.0% |
! | TCTGCTCTGGGTTGGGTTAC+GGG | + | chr3.1:80570110-80570129 | MS.gene48488:intron | 55.0% |
!! | GGGAGGTATTGCACTTGCTG+AGG | + | chr3.1:80571580-80571599 | MS.gene48488:CDS | 55.0% |
!! | GGTTGGCTTGAAAGGGCCAA+TGG | + | chr3.1:80570650-80570669 | MS.gene48488:CDS | 55.0% |
!! | TTGACGGATTCGGCGATCTC+GGG | - | chr3.1:80569433-80569452 | None:intergenic | 55.0% |
AGCTGCAACATTGGCGAGGG+AGG | + | chr3.1:80571563-80571582 | MS.gene48488:intron | 60.0% | |
AGTGGCACGAATCGGAGTGG+TGG | - | chr3.1:80569386-80569405 | None:intergenic | 60.0% | |
ATGTGCGAGGAGCTCTGCTC+TGG | + | chr3.1:80570097-80570116 | MS.gene48488:intron | 60.0% | |
CGGGACCAATACCATCACCG+GGG | - | chr3.1:80569414-80569433 | None:intergenic | 60.0% | |
TCCCTCGCCAATGTTGCAGC+TGG | - | chr3.1:80571564-80571583 | None:intergenic | 60.0% | |
TGTGCGAGGAGCTCTGCTCT+GGG | + | chr3.1:80570098-80570117 | MS.gene48488:intron | 60.0% | |
! | CGGAGTGGTGGAGGAAGAGA+AGG | - | chr3.1:80569374-80569393 | None:intergenic | 60.0% |
! | CTGCTCTGGGTTGGGTTACG+GGG | + | chr3.1:80570111-80570130 | MS.gene48488:intron | 60.0% |
! | GAGGAGCTCTGCTCTGGGTT+GGG | + | chr3.1:80570103-80570122 | MS.gene48488:intron | 60.0% |
! | GCCACTCTTTTCCCCGGTGA+TGG | + | chr3.1:80569400-80569419 | MS.gene48488:CDS | 60.0% |
! | TGCTCTGGGTTGGGTTACGG+GGG | + | chr3.1:80570112-80570131 | MS.gene48488:intron | 60.0% |
GGCACGAATCGGAGTGGTGG+AGG | - | chr3.1:80569383-80569402 | None:intergenic | 65.0% | |
! | CGAGGAGCTCTGCTCTGGGT+TGG | + | chr3.1:80570102-80570121 | MS.gene48488:intron | 65.0% |
! | GCTCTGGGTTGGGTTACGGG+GGG | + | chr3.1:80570113-80570132 | MS.gene48488:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 80569313 | 80572026 | 80569313 | ID=MS.gene48488 |
chr3.1 | mRNA | 80569313 | 80572026 | 80569313 | ID=MS.gene48488.t1;Parent=MS.gene48488 |
chr3.1 | exon | 80569313 | 80569456 | 80569313 | ID=MS.gene48488.t1.exon1;Parent=MS.gene48488.t1 |
chr3.1 | CDS | 80569313 | 80569456 | 80569313 | ID=cds.MS.gene48488.t1;Parent=MS.gene48488.t1 |
chr3.1 | exon | 80570531 | 80570851 | 80570531 | ID=MS.gene48488.t1.exon2;Parent=MS.gene48488.t1 |
chr3.1 | CDS | 80570531 | 80570851 | 80570531 | ID=cds.MS.gene48488.t1;Parent=MS.gene48488.t1 |
chr3.1 | exon | 80570933 | 80571094 | 80570933 | ID=MS.gene48488.t1.exon3;Parent=MS.gene48488.t1 |
chr3.1 | CDS | 80570933 | 80571094 | 80570933 | ID=cds.MS.gene48488.t1;Parent=MS.gene48488.t1 |
chr3.1 | exon | 80571191 | 80571265 | 80571191 | ID=MS.gene48488.t1.exon4;Parent=MS.gene48488.t1 |
chr3.1 | CDS | 80571191 | 80571265 | 80571191 | ID=cds.MS.gene48488.t1;Parent=MS.gene48488.t1 |
chr3.1 | exon | 80571373 | 80571482 | 80571373 | ID=MS.gene48488.t1.exon5;Parent=MS.gene48488.t1 |
chr3.1 | CDS | 80571373 | 80571482 | 80571373 | ID=cds.MS.gene48488.t1;Parent=MS.gene48488.t1 |
chr3.1 | exon | 80571565 | 80571637 | 80571565 | ID=MS.gene48488.t1.exon6;Parent=MS.gene48488.t1 |
chr3.1 | CDS | 80571565 | 80571637 | 80571565 | ID=cds.MS.gene48488.t1;Parent=MS.gene48488.t1 |
chr3.1 | exon | 80571835 | 80572026 | 80571835 | ID=MS.gene48488.t1.exon7;Parent=MS.gene48488.t1 |
chr3.1 | CDS | 80571835 | 80572026 | 80571835 | ID=cds.MS.gene48488.t1;Parent=MS.gene48488.t1 |
Gene Sequence |
Protein sequence |