AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene48488


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene48488.t1 MTR_3g101470 96.927 358 6 1 1 358 1 353 0.0 715
MS.gene48488.t1 MTR_1g064070 93.575 358 23 0 1 358 1 358 0.0 701
MS.gene48488.t1 MTR_8g074030 48.774 367 170 4 5 358 9 370 5.14e-119 349
MS.gene48488.t1 MTR_5g023740 47.268 366 179 4 2 358 6 366 5.64e-116 341
MS.gene48488.t1 MTR_8g074030 48.229 367 168 5 5 358 9 366 5.85e-115 338
MS.gene48488.t1 MTR_5g023740 46.721 366 177 5 2 358 6 362 7.55e-112 330
MS.gene48488.t1 MTR_5g023740 47.766 291 135 4 2 286 6 285 9.76e-94 281
MS.gene48488.t1 MTR_5g023740 49.091 275 129 3 2 270 6 275 2.71e-93 280
MS.gene48488.t1 MTR_5g023740 48.364 275 127 4 2 270 6 271 2.34e-89 270
MS.gene48488.t1 MTR_2g104610 31.105 344 207 10 23 341 36 374 3.83e-43 154
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene48488.t1 AT5G03290 84.946 372 42 1 1 358 3 374 0.0 645
MS.gene48488.t1 AT3G09810 83.768 345 56 0 14 358 30 374 0.0 613
MS.gene48488.t1 AT4G35260 50.746 335 157 2 27 358 37 366 2.91e-116 342
MS.gene48488.t1 AT2G17130 47.839 347 165 4 18 358 30 366 2.19e-112 332
MS.gene48488.t1 AT4G35650 47.838 370 170 6 7 358 3 367 1.91e-111 330
MS.gene48488.t1 AT2G17130 47.262 347 163 5 18 358 30 362 1.42e-108 322
MS.gene48488.t1 AT1G32480 42.081 221 115 4 34 252 4 213 2.44e-56 183
MS.gene48488.t1 AT1G31180 30.636 346 210 10 23 341 35 377 1.75e-43 155
MS.gene48488.t1 AT1G31180 30.636 346 210 10 23 341 50 392 3.60e-43 155
MS.gene48488.t1 AT5G14200 31.138 334 204 9 31 341 50 380 8.66e-43 153
MS.gene48488.t1 AT5G14200 31.138 334 204 9 31 341 50 380 1.14e-42 153
MS.gene48488.t1 AT1G80560 30.383 339 200 9 31 341 46 376 5.95e-41 148
MS.gene48488.t1 AT5G14200 26.957 230 144 7 32 239 51 278 1.85e-13 70.5

Find 88 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAAGAAAGCTCTGTGTTCT+AGG 0.277010 3.1:-80570594 None:intergenic
CGACCTTGTTACAGCCTTCC+TGG 0.291185 3.1:+80570747 MS.gene48488:CDS
CGTTACCATGTTGCGCCATT+TGG 0.298167 3.1:+80571870 MS.gene48488:CDS
GCTGGCTTGATTGGAGGATT+AGG 0.316432 3.1:+80571448 MS.gene48488:CDS
AGTGACCTGTTTGACGGATT+CGG 0.336125 3.1:-80569440 None:intergenic
TAGAATCGGTAAGAAGAAAC+AGG 0.350254 3.1:+80570628 MS.gene48488:CDS
GACCTTTGTGCTGGCTTGAT+TGG 0.351034 3.1:+80571439 MS.gene48488:CDS
CTCACCTTCCCAGCAATATC+AGG 0.370076 3.1:-80571620 None:intergenic
GGCTCAGCACCTGATATTGC+TGG 0.370773 3.1:+80571611 MS.gene48488:CDS
TTGGTGATGCCTAACCTTTA+TGG 0.384596 3.1:+80571403 MS.gene48488:CDS
TAATGCTCTTCCCATTCAAT+TGG 0.399010 3.1:-80570552 None:intergenic
GGGCCAATGGCTACTCCTAT+TGG 0.403413 3.1:+80570663 MS.gene48488:CDS
GAATACTATCTGCTTTATCA+TGG 0.416549 3.1:-80571897 None:intergenic
GAACGATGCCCTTTGCCAAT+AGG 0.418274 3.1:-80570678 None:intergenic
GAACACAGAGCTTTCTTACA+TGG 0.419020 3.1:+80570598 MS.gene48488:CDS
CTTTGTGCTGGCTTGATTGG+AGG 0.426373 3.1:+80571442 MS.gene48488:CDS
CTGCTGAAGTTCCAATTGAA+TGG 0.426984 3.1:+80570541 MS.gene48488:CDS
CGCTGATTATATCACCATAA+AGG 0.430909 3.1:-80571417 None:intergenic
ACTTCCTCATATGCTATCTC+TGG 0.456407 3.1:-80571218 None:intergenic
TTTGACGGATTCGGCGATCT+CGG 0.461264 3.1:-80569431 None:intergenic
GATCGCCGAATCCGTCAAAC+AGG 0.465664 3.1:+80569435 MS.gene48488:CDS
TGCTGAAGTTCCAATTGAAT+GGG 0.465872 3.1:+80570542 MS.gene48488:CDS
AGAAACAGGGTTGGCTTGAA+AGG 0.465983 3.1:+80570642 MS.gene48488:CDS
AAGAGAAGTGACCTGTTTGA+CGG 0.467875 3.1:-80569446 None:intergenic
TACATGGGAAAGTTTAGAAT+CGG 0.469643 3.1:+80570614 MS.gene48488:CDS
CAATTGGAACTTCAGCAGCT+TGG 0.477455 3.1:-80570536 None:intergenic
CCTCTCTCTTCCATGTGCCT+TGG 0.478415 3.1:-80571015 None:intergenic
CAGATACTTCGACGAACTCT+CGG 0.482540 3.1:+80569322 MS.gene48488:CDS
ATATCCAGAGATAGCATATG+AGG 0.484439 3.1:+80571214 MS.gene48488:CDS
TTCCTTCTGCAATTGTGTTG+AGG 0.484815 3.1:-80571930 None:intergenic
ATAATCAGCGACCTTTGTGC+TGG 0.491910 3.1:+80571430 MS.gene48488:CDS
TTGACGGATTCGGCGATCTC+GGG 0.494209 3.1:-80569430 None:intergenic
AAGTACCGAACTGCTGATCT+TGG 0.507542 3.1:+80571952 MS.gene48488:CDS
GAGGATTAGGCTTGACACCC+AGG 0.514136 3.1:+80571461 MS.gene48488:CDS
GGCACGAATCGGAGTGGTGG+AGG 0.523029 3.1:-80569380 None:intergenic
TTCTGCAATTGTGTTGAGGA+TGG 0.523916 3.1:-80571926 None:intergenic
CTCGGGACCAATACCATCAC+CGG 0.527524 3.1:-80569413 None:intergenic
GGGAAAAGAGTGGCACGAAT+CGG 0.530220 3.1:-80569391 None:intergenic
GCACTTGCTGAGGCTGTACA+TGG 0.533721 3.1:+80571590 MS.gene48488:CDS
CTTTATCATGGAGATCCAAA+TGG 0.536914 3.1:-80571885 None:intergenic
GTGGAGGAAGAGAAGGACCT+AGG 0.536981 3.1:-80569364 None:intergenic
TTTCACTATGCCAAGGCACA+TGG 0.540596 3.1:+80571005 MS.gene48488:CDS
CGGAGTGGTGGAGGAAGAGA+AGG 0.541340 3.1:-80569371 None:intergenic
TAAGAAAGCTCTGTGTTCTA+GGG 0.543527 3.1:-80570593 None:intergenic
TGGCTACTCCTATTGGCAAA+GGG 0.544231 3.1:+80570670 MS.gene48488:CDS
TACCGAACTGCTGATCTTGG+TGG 0.549369 3.1:+80571955 MS.gene48488:CDS
GAAACAGGGTTGGCTTGAAA+GGG 0.549689 3.1:+80570643 MS.gene48488:CDS
AGCTGCAACATTGGCGAGGG+AGG 0.553258 3.1:+80571563 MS.gene48488:intron
AGCACCTGATATTGCTGGGA+AGG 0.553390 3.1:+80571616 MS.gene48488:CDS
TGCCACCAAGATCAGCAGTT+CGG 0.556271 3.1:-80571957 None:intergenic
GTACAGTGGACTTGAACATC+AGG 0.556840 3.1:+80570830 MS.gene48488:CDS
CATTGACAATTGCTGCATGA+TGG 0.561036 3.1:+80571244 MS.gene48488:CDS
ATGGCTACTCCTATTGGCAA+AGG 0.563155 3.1:+80570669 MS.gene48488:CDS
ATTATATCACCATAAAGGTT+AGG 0.563728 3.1:-80571412 None:intergenic
TTTGGGTTATAGGTTGTGAG+GGG 0.565156 3.1:+80570921 MS.gene48488:intron
TCCAGCTGCAACATTGGCGA+GGG 0.568702 3.1:+80571560 MS.gene48488:intron
AACACAGAGCTTTCTTACAT+GGG 0.574926 3.1:+80570599 MS.gene48488:CDS
GAACTCAACAGCAAAGCAGT+TGG 0.576627 3.1:-80571847 None:intergenic
GCTCAGCACCTGATATTGCT+GGG 0.581328 3.1:+80571612 MS.gene48488:CDS
TCGGTAAGAAGAAACAGGGT+TGG 0.583355 3.1:+80570633 MS.gene48488:CDS
CAAATGGCGCAACATGGTAA+CGG 0.584966 3.1:-80571869 None:intergenic
ACCTAGGGTTTGACAGATAG+CGG 0.587539 3.1:-80569348 None:intergenic
AGTGGCACGAATCGGAGTGG+TGG 0.588339 3.1:-80569383 None:intergenic
TTCCAGCTGCAACATTGGCG+AGG 0.595214 3.1:+80571559 MS.gene48488:intron
TTGCCAATAGGAGTAGCCAT+TGG 0.595229 3.1:-80570666 None:intergenic
GGTTGGCTTGAAAGGGCCAA+TGG 0.602286 3.1:+80570650 MS.gene48488:CDS
GGGAGGTATTGCACTTGCTG+AGG 0.604265 3.1:+80571580 MS.gene48488:CDS
GCCGCTATCTGTCAAACCCT+AGG 0.605814 3.1:+80569347 MS.gene48488:CDS
ATCCTCAACACAATTGCAGA+AGG 0.609103 3.1:+80571928 MS.gene48488:CDS
CTGTGTTCTAGGGTCAATTG+TGG 0.611038 3.1:-80570583 None:intergenic
TCGGGACCAATACCATCACC+GGG 0.615254 3.1:-80569412 None:intergenic
TGGAGGAAGAGAAGGACCTA+GGG 0.615545 3.1:-80569363 None:intergenic
CCAAGGCACATGGAAGAGAG+AGG 0.619352 3.1:+80571015 MS.gene48488:CDS
GAGATCCAAATGGCGCAACA+TGG 0.630253 3.1:-80571875 None:intergenic
AACATTATGCAAAAGACTGA+CGG 0.632176 3.1:+80571059 MS.gene48488:CDS
AATGGGAAGAGCATTACGTA+GGG 0.633880 3.1:+80570559 MS.gene48488:CDS
CAAGGCACATGGAAGAGAGA+GGG 0.638399 3.1:+80571016 MS.gene48488:CDS
CAGGAAGGCTGTAACAAGGT+CGG 0.645409 3.1:-80570746 None:intergenic
TAGCCAGGAAGGCTGTAACA+AGG 0.645729 3.1:-80570750 None:intergenic
AATACAGAAGGCGAGTACAG+TGG 0.649635 3.1:+80570816 MS.gene48488:CDS
ACAATCCGTGAAAATACAGA+AGG 0.651487 3.1:+80570804 MS.gene48488:CDS
GAATGGGAAGAGCATTACGT+AGG 0.653825 3.1:+80570558 MS.gene48488:CDS
ACCATCACCGGGGAAAAGAG+TGG 0.655812 3.1:-80569401 None:intergenic
ACGTCAAGCAAGTTTACGAG+TGG 0.657438 3.1:+80570971 MS.gene48488:CDS
AGAATCGGTAAGAAGAAACA+GGG 0.666965 3.1:+80570629 MS.gene48488:CDS
AAGAGTGGCACGAATCGGAG+TGG 0.687099 3.1:-80569386 None:intergenic
CTCCAATCAAGCCAGCACAA+AGG 0.693100 3.1:-80571441 None:intergenic
CGGGACCAATACCATCACCG+GGG 0.794777 3.1:-80569411 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTATAAAATTAAATTT+GGG - chr3.1:80569573-80569592 None:intergenic 0.0%
!! TATAATTATAAAATTAAATT+TGG - chr3.1:80569574-80569593 None:intergenic 0.0%
!!! TTAATTTATTTAGCATTTTT+GGG + chr3.1:80570904-80570923 MS.gene48488:intron 10.0%
!!! TTTAATTTATTTAGCATTTT+TGG + chr3.1:80570903-80570922 MS.gene48488:intron 10.0%
!!! TTTGTTTTGTTTTAAATTTT+GGG + chr3.1:80571487-80571506 MS.gene48488:intron 10.0%
!!! TTTTGTTTTGTTTTAAATTT+TGG + chr3.1:80571486-80571505 MS.gene48488:intron 10.0%
!! AACAAGTGTAATTTAATTAA+AGG - chr3.1:80571796-80571815 None:intergenic 15.0%
!!! TTTTTTAAACTGATACAAAT+GGG + chr3.1:80569696-80569715 MS.gene48488:intron 15.0%
!!! TTTTTTTAAACTGATACAAA+TGG + chr3.1:80569695-80569714 MS.gene48488:intron 15.0%
!! AAATTAAATTGATCAGAACT+TGG - chr3.1:80570891-80570910 None:intergenic 20.0%
!! GTCAATAATTTAAAAGAGAA+AGG + chr3.1:80570006-80570025 MS.gene48488:intron 20.0%
!! TAAAACAAAACAAAAAACCT+GGG - chr3.1:80571481-80571500 None:intergenic 20.0%
!! TAAATTTGGGAAAACATATT+TGG - chr3.1:80569560-80569579 None:intergenic 20.0%
!! TTAAAACAAAACAAAAAACC+TGG - chr3.1:80571482-80571501 None:intergenic 20.0%
!!! ACAAGCATAAAGTTTTAAAA+CGG - chr3.1:80571676-80571695 None:intergenic 20.0%
!!! GTTTTAAAACGGATAATATA+TGG - chr3.1:80571665-80571684 None:intergenic 20.0%
!!! TTTTTACTATTGCTACAATT+AGG + chr3.1:80570509-80570528 MS.gene48488:intron 20.0%
! AAAATGAACCAATATACTGA+TGG - chr3.1:80570304-80570323 None:intergenic 25.0%
! AAATAAGATAACAGCAAACA+AGG - chr3.1:80569615-80569634 None:intergenic 25.0%
! AAATGAACCAATATACTGAT+GGG - chr3.1:80570303-80570322 None:intergenic 25.0%
! AATGACAAATGTTAGTATGT+TGG + chr3.1:80570159-80570178 MS.gene48488:intron 25.0%
! ATTATATCACCATAAAGGTT+AGG - chr3.1:80571415-80571434 None:intergenic 25.0%
! TATAAGCTCAAGTTCAAATT+AGG - chr3.1:80569727-80569746 None:intergenic 25.0%
!! TAAGTTCTTTTCTTAGAGTA+AGG - chr3.1:80570710-80570729 None:intergenic 25.0%
!!! AAACTTTATGCTTGTTTTCA+TGG + chr3.1:80571681-80571700 MS.gene48488:intron 25.0%
!!! ATTGAGACAGAGTATTTTAT+AGG - chr3.1:80571119-80571138 None:intergenic 25.0%
!!! ATTTAGCATTTTTGGGTTAT+AGG + chr3.1:80570911-80570930 MS.gene48488:intron 25.0%
!!! TGCTTTGTTTGTTTCTTATT+GGG + chr3.1:80570426-80570445 MS.gene48488:intron 25.0%
!!! TTGCTTTGTTTGTTTCTTAT+TGG + chr3.1:80570425-80570444 MS.gene48488:intron 25.0%
AAATGTACTGTAATCATCCA+TGG + chr3.1:80569786-80569805 MS.gene48488:intron 30.0%
AACATTATGCAAAAGACTGA+CGG + chr3.1:80571059-80571078 MS.gene48488:CDS 30.0%
AAGTTTCTTAGTTCATCTGA+AGG - chr3.1:80571753-80571772 None:intergenic 30.0%
ATGGATGATTACAGTACATT+TGG - chr3.1:80569787-80569806 None:intergenic 30.0%
CAAACAAAGCAAGAGATATA+AGG - chr3.1:80570417-80570436 None:intergenic 30.0%
CTAAGAGATTAAAGGATTGA+AGG - chr3.1:80570238-80570257 None:intergenic 30.0%
GAATACTATCTGCTTTATCA+TGG - chr3.1:80571900-80571919 None:intergenic 30.0%
TCTTTCTTTGTCAATTGTCA+TGG + chr3.1:80570329-80570348 MS.gene48488:intron 30.0%
! TACATGGGAAAGTTTAGAAT+CGG + chr3.1:80570614-80570633 MS.gene48488:CDS 30.0%
! TTGCAATTGACTTAAACCTT+TGG + chr3.1:80569641-80569660 MS.gene48488:intron 30.0%
!! AAATTACACTTGTTTTCCTG+TGG + chr3.1:80571802-80571821 MS.gene48488:intron 30.0%
!! TTAACTTGATGAGTTGATGT+AGG + chr3.1:80571276-80571295 MS.gene48488:intron 30.0%
AAACCTATGAACATAACGAC+AGG - chr3.1:80569761-80569780 None:intergenic 35.0%
AACACAGAGCTTTCTTACAT+GGG + chr3.1:80570599-80570618 MS.gene48488:CDS 35.0%
ACAATCCGTGAAAATACAGA+AGG + chr3.1:80570804-80570823 MS.gene48488:CDS 35.0%
AGAATCGGTAAGAAGAAACA+GGG + chr3.1:80570629-80570648 MS.gene48488:CDS 35.0%
AGTTAGGTCTGTTTGGTTAA+TGG + chr3.1:80569854-80569873 MS.gene48488:intron 35.0%
ATATCCAGAGATAGCATATG+AGG + chr3.1:80571214-80571233 MS.gene48488:CDS 35.0%
ATGGTTCAAAATACAGCATC+TGG + chr3.1:80569805-80569824 MS.gene48488:intron 35.0%
ATTGAAGGAGTAAATGTCCA+GGG - chr3.1:80570223-80570242 None:intergenic 35.0%
CAAATTCTGCATAAAACCAC+AGG - chr3.1:80571821-80571840 None:intergenic 35.0%
CCAACGAAAGAAAACAGAAT+GGG - chr3.1:80570277-80570296 None:intergenic 35.0%
CTTTATCATGGAGATCCAAA+TGG - chr3.1:80571888-80571907 None:intergenic 35.0%
GATACTATAGTTTATGTGCG+AGG + chr3.1:80570084-80570103 MS.gene48488:intron 35.0%
GATGATTACAGTACATTTGG+AGG - chr3.1:80569784-80569803 None:intergenic 35.0%
TAAGAAAGCTCTGTGTTCTA+GGG - chr3.1:80570596-80570615 None:intergenic 35.0%
TAATGCTCTTCCCATTCAAT+TGG - chr3.1:80570555-80570574 None:intergenic 35.0%
TAGAATCGGTAAGAAGAAAC+AGG + chr3.1:80570628-80570647 MS.gene48488:CDS 35.0%
TGCTGAAGTTCCAATTGAAT+GGG + chr3.1:80570542-80570561 MS.gene48488:CDS 35.0%
TGGTTGTGCTAAGAGATTAA+AGG - chr3.1:80570246-80570265 None:intergenic 35.0%
TTTGTCAATTGTCATGGATG+TGG + chr3.1:80570335-80570354 MS.gene48488:intron 35.0%
! ACCAATACATCAAAAAGTGC+AGG - chr3.1:80571388-80571407 None:intergenic 35.0%
! CCATTCTGTTTTCTTTCGTT+GGG + chr3.1:80570275-80570294 MS.gene48488:intron 35.0%
! CGCTGATTATATCACCATAA+AGG - chr3.1:80571420-80571439 None:intergenic 35.0%
! GTCAGTCTTTTGCATAATGT+TGG - chr3.1:80571060-80571079 None:intergenic 35.0%
! TTAGTATTTTCTCCATTGCC+AGG + chr3.1:80570190-80570209 MS.gene48488:intron 35.0%
!! AGATGCTGTATTTTGAACCA+TGG - chr3.1:80569806-80569825 None:intergenic 35.0%
!! GATATTTTTCAGCAACCTCA+CGG - chr3.1:80571199-80571218 None:intergenic 35.0%
!! TCCTGCACTTTTTGATGTAT+TGG + chr3.1:80571384-80571403 MS.gene48488:CDS 35.0%
!!! CTGTGGTTTTATGCAGAATT+TGG + chr3.1:80571819-80571838 MS.gene48488:intron 35.0%
!!! GACACTAGTTTTATCTCCAA+AGG - chr3.1:80569660-80569679 None:intergenic 35.0%
!!! TTATTTTTAGTGTTGCCGTG+AGG + chr3.1:80571181-80571200 MS.gene48488:intron 35.0%
!!! TTTTGGGTTATAGGTTGTGA+GGG + chr3.1:80570920-80570939 MS.gene48488:intron 35.0%
!!! TTTTTGGGTTATAGGTTGTG+AGG + chr3.1:80570919-80570938 MS.gene48488:intron 35.0%
AAAATGACACATGCCATGAC+TGG - chr3.1:80569507-80569526 None:intergenic 40.0%
AAGAGAAGTGACCTGTTTGA+CGG - chr3.1:80569449-80569468 None:intergenic 40.0%
AATACAGCATCTGGTGATAG+TGG + chr3.1:80569814-80569833 MS.gene48488:intron 40.0%
AATCCTAGGGTATGTTTGGA+TGG - chr3.1:80570047-80570066 None:intergenic 40.0%
AATGGAGGAGAGGATTTAGA+AGG + chr3.1:80569872-80569891 MS.gene48488:intron 40.0%
ACGAGTAAGTTAGGTCTGTT+TGG + chr3.1:80569847-80569866 MS.gene48488:intron 40.0%
ACTTCCTCATATGCTATCTC+TGG - chr3.1:80571221-80571240 None:intergenic 40.0%
AGACCTGTCGTTATGTTCAT+AGG + chr3.1:80569755-80569774 MS.gene48488:intron 40.0%
ATCCTCAACACAATTGCAGA+AGG + chr3.1:80571928-80571947 MS.gene48488:CDS 40.0%
ATGGAGGAGAGGATTTAGAA+GGG + chr3.1:80569873-80569892 MS.gene48488:intron 40.0%
CAGGTCACTTCTCTTTCAAT+TGG + chr3.1:80569454-80569473 MS.gene48488:intron 40.0%
CATTGACAATTGCTGCATGA+TGG + chr3.1:80571244-80571263 MS.gene48488:CDS 40.0%
CCCAACGAAAGAAAACAGAA+TGG - chr3.1:80570278-80570297 None:intergenic 40.0%
CTGCTGAAGTTCCAATTGAA+TGG + chr3.1:80570541-80570560 MS.gene48488:CDS 40.0%
GAACACAGAGCTTTCTTACA+TGG + chr3.1:80570598-80570617 MS.gene48488:CDS 40.0%
GATTGAAGGAGTAAATGTCC+AGG - chr3.1:80570224-80570243 None:intergenic 40.0%
GTAAGAAAGCTCTGTGTTCT+AGG - chr3.1:80570597-80570616 None:intergenic 40.0%
TAGGTCTGTTTGGTTAATGG+AGG + chr3.1:80569857-80569876 MS.gene48488:intron 40.0%
TTCCTTCTGCAATTGTGTTG+AGG - chr3.1:80571933-80571952 None:intergenic 40.0%
TTCTGCAATTGTGTTGAGGA+TGG - chr3.1:80571929-80571948 None:intergenic 40.0%
TTGCTGCATGATGGTAATCT+TGG + chr3.1:80571253-80571272 MS.gene48488:intron 40.0%
TTGGGTTCCCATCAGTATAT+TGG + chr3.1:80570293-80570312 MS.gene48488:intron 40.0%
! ACTCGCCTTCTGTATTTTCA+CGG - chr3.1:80570812-80570831 None:intergenic 40.0%
! ATCTTTTCCAGCTGCAACAT+TGG + chr3.1:80571554-80571573 MS.gene48488:intron 40.0%
! CCCATTCTGTTTTCTTTCGT+TGG + chr3.1:80570274-80570293 MS.gene48488:intron 40.0%
! GTATGCTTTTCACTATGCCA+AGG + chr3.1:80570998-80571017 MS.gene48488:CDS 40.0%
! GTTTTCTTCGAAACCAGTCA+TGG + chr3.1:80569491-80569510 MS.gene48488:intron 40.0%
! TTTGGGTTATAGGTTGTGAG+GGG + chr3.1:80570921-80570940 MS.gene48488:intron 40.0%
!! AATGGGAAGAGCATTACGTA+GGG + chr3.1:80570559-80570578 MS.gene48488:CDS 40.0%
!! TCATATCGAGTTTTGTAGCC+AGG - chr3.1:80570768-80570787 None:intergenic 40.0%
!! TTGGTGATGCCTAACCTTTA+TGG + chr3.1:80571403-80571422 MS.gene48488:CDS 40.0%
AAACAGAATGGGAGCTCACT+TGG - chr3.1:80570266-80570285 None:intergenic 45.0%
AAGGTTGTCCTTGATGCAAG+TGG - chr3.1:80571734-80571753 None:intergenic 45.0%
AATACAGAAGGCGAGTACAG+TGG + chr3.1:80570816-80570835 MS.gene48488:CDS 45.0%
AATGTCCAGGGTTTGAATCC+TGG - chr3.1:80570211-80570230 None:intergenic 45.0%
ACCCAATAGCAGCAATCCTA+GGG - chr3.1:80570060-80570079 None:intergenic 45.0%
ACCCTAGGATTGCTGCTATT+GGG + chr3.1:80570056-80570075 MS.gene48488:intron 45.0%
ACCTAGGGTTTGACAGATAG+CGG - chr3.1:80569351-80569370 None:intergenic 45.0%
ACGTCAAGCAAGTTTACGAG+TGG + chr3.1:80570971-80570990 MS.gene48488:CDS 45.0%
ATAATCAGCGACCTTTGTGC+TGG + chr3.1:80571430-80571449 MS.gene48488:CDS 45.0%
ATGGCTACTCCTATTGGCAA+AGG + chr3.1:80570669-80570688 MS.gene48488:CDS 45.0%
CAAATGGCGCAACATGGTAA+CGG - chr3.1:80571872-80571891 None:intergenic 45.0%
CAATTGGAACTTCAGCAGCT+TGG - chr3.1:80570539-80570558 None:intergenic 45.0%
CAGATACTTCGACGAACTCT+CGG + chr3.1:80569322-80569341 MS.gene48488:CDS 45.0%
CAGCAATCCTAGGGTATGTT+TGG - chr3.1:80570051-80570070 None:intergenic 45.0%
CTAGGGTATGTTTGGATGGA+GGG - chr3.1:80570043-80570062 None:intergenic 45.0%
CTGTTTGGTTAATGGAGGAG+AGG + chr3.1:80569862-80569881 MS.gene48488:intron 45.0%
GAACTCAACAGCAAAGCAGT+TGG - chr3.1:80571850-80571869 None:intergenic 45.0%
GAATGTGTTAGCGAACCTTC+AGG - chr3.1:80571091-80571110 None:intergenic 45.0%
GATTCTTCACAAGCTGTGGA+TGG - chr3.1:80571366-80571385 None:intergenic 45.0%
TACCCTAGGATTGCTGCTAT+TGG + chr3.1:80570055-80570074 MS.gene48488:intron 45.0%
TAGGGTATGTTTGGATGGAG+GGG - chr3.1:80570042-80570061 None:intergenic 45.0%
TCGGTAAGAAGAAACAGGGT+TGG + chr3.1:80570633-80570652 MS.gene48488:CDS 45.0%
TGGCTACTCCTATTGGCAAA+GGG + chr3.1:80570670-80570689 MS.gene48488:CDS 45.0%
TTGCCAATAGGAGTAGCCAT+TGG - chr3.1:80570669-80570688 None:intergenic 45.0%
TTTCACTATGCCAAGGCACA+TGG + chr3.1:80571005-80571024 MS.gene48488:CDS 45.0%
! GTACAGTGGACTTGAACATC+AGG + chr3.1:80570830-80570849 MS.gene48488:CDS 45.0%
!! AAGTACCGAACTGCTGATCT+TGG + chr3.1:80571952-80571971 MS.gene48488:CDS 45.0%
!! AGAAACAGGGTTGGCTTGAA+AGG + chr3.1:80570642-80570661 MS.gene48488:CDS 45.0%
!! AGTGACCTGTTTGACGGATT+CGG - chr3.1:80569443-80569462 None:intergenic 45.0%
!! ATCGAGTTTTGTAGCCAGGA+AGG - chr3.1:80570764-80570783 None:intergenic 45.0%
!! CTGTGTTCTAGGGTCAATTG+TGG - chr3.1:80570586-80570605 None:intergenic 45.0%
!! GAAACAGGGTTGGCTTGAAA+GGG + chr3.1:80570643-80570662 MS.gene48488:CDS 45.0%
!! GAATGGGAAGAGCATTACGT+AGG + chr3.1:80570558-80570577 MS.gene48488:CDS 45.0%
AGCACCTGATATTGCTGGGA+AGG + chr3.1:80571616-80571635 MS.gene48488:CDS 50.0%
CAAGGCACATGGAAGAGAGA+GGG + chr3.1:80571016-80571035 MS.gene48488:CDS 50.0%
CACCCAATAGCAGCAATCCT+AGG - chr3.1:80570061-80570080 None:intergenic 50.0%
CAGGAAGGCTGTAACAAGGT+CGG - chr3.1:80570749-80570768 None:intergenic 50.0%
CAGGGTTTGAATCCTGGCAA+TGG - chr3.1:80570205-80570224 None:intergenic 50.0%
CATTGCCAGGATTCAAACCC+TGG + chr3.1:80570203-80570222 MS.gene48488:intron 50.0%
CCTAGGGTATGTTTGGATGG+AGG - chr3.1:80570044-80570063 None:intergenic 50.0%
CCTCCATCCAAACATACCCT+AGG + chr3.1:80570041-80570060 MS.gene48488:intron 50.0%
CGTTACCATGTTGCGCCATT+TGG + chr3.1:80571870-80571889 MS.gene48488:CDS 50.0%
CTCACCTTCCCAGCAATATC+AGG - chr3.1:80571623-80571642 None:intergenic 50.0%
CTCCAATCAAGCCAGCACAA+AGG - chr3.1:80571444-80571463 None:intergenic 50.0%
CTTGTGCACCACTTGCATCA+AGG + chr3.1:80571723-80571742 MS.gene48488:intron 50.0%
GAACGATGCCCTTTGCCAAT+AGG - chr3.1:80570681-80570700 None:intergenic 50.0%
GAGATCCAAATGGCGCAACA+TGG - chr3.1:80571878-80571897 None:intergenic 50.0%
GCAGGATTCTTCACAAGCTG+TGG - chr3.1:80571370-80571389 None:intergenic 50.0%
GCTCAGCACCTGATATTGCT+GGG + chr3.1:80571612-80571631 MS.gene48488:CDS 50.0%
GGGAAAAGAGTGGCACGAAT+CGG - chr3.1:80569394-80569413 None:intergenic 50.0%
GTATGTTTGGATGGAGGGGA+GGG - chr3.1:80570038-80570057 None:intergenic 50.0%
GTGTGTGGGACGAGTAAGTT+AGG + chr3.1:80569838-80569857 MS.gene48488:intron 50.0%
TACCGAACTGCTGATCTTGG+TGG + chr3.1:80571955-80571974 MS.gene48488:CDS 50.0%
TAGCCAGGAAGGCTGTAACA+AGG - chr3.1:80570753-80570772 None:intergenic 50.0%
TATGTTTGGATGGAGGGGAG+GGG - chr3.1:80570037-80570056 None:intergenic 50.0%
TGCCACCAAGATCAGCAGTT+CGG - chr3.1:80571960-80571979 None:intergenic 50.0%
TGGAGGAAGAGAAGGACCTA+GGG - chr3.1:80569366-80569385 None:intergenic 50.0%
! GACTGACGGTCTTTTCCTGA+AGG + chr3.1:80571073-80571092 MS.gene48488:CDS 50.0%
! GTCTGTTTTGCTGCTGAGAG+TGG + chr3.1:80570359-80570378 MS.gene48488:intron 50.0%
!! ATTCGTGCCACTCTTTTCCC+CGG + chr3.1:80569394-80569413 MS.gene48488:CDS 50.0%
!! CTGGTGATAGTGGTGTGTGT+GGG + chr3.1:80569824-80569843 MS.gene48488:intron 50.0%
!! CTTTGTGCTGGCTTGATTGG+AGG + chr3.1:80571442-80571461 MS.gene48488:CDS 50.0%
!! CTTTTCCCCGGTGATGGTAT+TGG + chr3.1:80569406-80569425 MS.gene48488:CDS 50.0%
!! GACCTTTGTGCTGGCTTGAT+TGG + chr3.1:80571439-80571458 MS.gene48488:CDS 50.0%
!! GCTGGCTTGATTGGAGGATT+AGG + chr3.1:80571448-80571467 MS.gene48488:CDS 50.0%
!! TCTGGTGATAGTGGTGTGTG+TGG + chr3.1:80569823-80569842 MS.gene48488:intron 50.0%
!! TTTGACGGATTCGGCGATCT+CGG - chr3.1:80569434-80569453 None:intergenic 50.0%
AAGAGTGGCACGAATCGGAG+TGG - chr3.1:80569389-80569408 None:intergenic 55.0%
ACCATCACCGGGGAAAAGAG+TGG - chr3.1:80569404-80569423 None:intergenic 55.0%
ATGTTTGGATGGAGGGGAGG+GGG - chr3.1:80570036-80570055 None:intergenic 55.0%
ATTGCTGGGAAGGTGAGCTG+TGG + chr3.1:80571626-80571645 MS.gene48488:intron 55.0%
CCAAGGCACATGGAAGAGAG+AGG + chr3.1:80571015-80571034 MS.gene48488:CDS 55.0%
CCTCTCTCTTCCATGTGCCT+TGG - chr3.1:80571018-80571037 None:intergenic 55.0%
CGACCTTGTTACAGCCTTCC+TGG + chr3.1:80570747-80570766 MS.gene48488:CDS 55.0%
CTCGGGACCAATACCATCAC+CGG - chr3.1:80569416-80569435 None:intergenic 55.0%
GAGGATTAGGCTTGACACCC+AGG + chr3.1:80571461-80571480 MS.gene48488:CDS 55.0%
GATCGCCGAATCCGTCAAAC+AGG + chr3.1:80569435-80569454 MS.gene48488:CDS 55.0%
GCCGCTATCTGTCAAACCCT+AGG + chr3.1:80569347-80569366 MS.gene48488:CDS 55.0%
GGCTCAGCACCTGATATTGC+TGG + chr3.1:80571611-80571630 MS.gene48488:CDS 55.0%
GGGCCAATGGCTACTCCTAT+TGG + chr3.1:80570663-80570682 MS.gene48488:CDS 55.0%
GGTATGTTTGGATGGAGGGG+AGG - chr3.1:80570039-80570058 None:intergenic 55.0%
GTGGAGGAAGAGAAGGACCT+AGG - chr3.1:80569367-80569386 None:intergenic 55.0%
TCCAGCTGCAACATTGGCGA+GGG + chr3.1:80571560-80571579 MS.gene48488:intron 55.0%
TCGGGACCAATACCATCACC+GGG - chr3.1:80569415-80569434 None:intergenic 55.0%
TTCCAGCTGCAACATTGGCG+AGG + chr3.1:80571559-80571578 MS.gene48488:intron 55.0%
! CTCTGCTCTGGGTTGGGTTA+CGG + chr3.1:80570109-80570128 MS.gene48488:intron 55.0%
! GCACTTGCTGAGGCTGTACA+TGG + chr3.1:80571590-80571609 MS.gene48488:CDS 55.0%
! TCTGCTCTGGGTTGGGTTAC+GGG + chr3.1:80570110-80570129 MS.gene48488:intron 55.0%
!! GGGAGGTATTGCACTTGCTG+AGG + chr3.1:80571580-80571599 MS.gene48488:CDS 55.0%
!! GGTTGGCTTGAAAGGGCCAA+TGG + chr3.1:80570650-80570669 MS.gene48488:CDS 55.0%
!! TTGACGGATTCGGCGATCTC+GGG - chr3.1:80569433-80569452 None:intergenic 55.0%
AGCTGCAACATTGGCGAGGG+AGG + chr3.1:80571563-80571582 MS.gene48488:intron 60.0%
AGTGGCACGAATCGGAGTGG+TGG - chr3.1:80569386-80569405 None:intergenic 60.0%
ATGTGCGAGGAGCTCTGCTC+TGG + chr3.1:80570097-80570116 MS.gene48488:intron 60.0%
CGGGACCAATACCATCACCG+GGG - chr3.1:80569414-80569433 None:intergenic 60.0%
TCCCTCGCCAATGTTGCAGC+TGG - chr3.1:80571564-80571583 None:intergenic 60.0%
TGTGCGAGGAGCTCTGCTCT+GGG + chr3.1:80570098-80570117 MS.gene48488:intron 60.0%
! CGGAGTGGTGGAGGAAGAGA+AGG - chr3.1:80569374-80569393 None:intergenic 60.0%
! CTGCTCTGGGTTGGGTTACG+GGG + chr3.1:80570111-80570130 MS.gene48488:intron 60.0%
! GAGGAGCTCTGCTCTGGGTT+GGG + chr3.1:80570103-80570122 MS.gene48488:intron 60.0%
! GCCACTCTTTTCCCCGGTGA+TGG + chr3.1:80569400-80569419 MS.gene48488:CDS 60.0%
! TGCTCTGGGTTGGGTTACGG+GGG + chr3.1:80570112-80570131 MS.gene48488:intron 60.0%
GGCACGAATCGGAGTGGTGG+AGG - chr3.1:80569383-80569402 None:intergenic 65.0%
! CGAGGAGCTCTGCTCTGGGT+TGG + chr3.1:80570102-80570121 MS.gene48488:intron 65.0%
! GCTCTGGGTTGGGTTACGGG+GGG + chr3.1:80570113-80570132 MS.gene48488:intron 65.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 80569313 80572026 80569313 ID=MS.gene48488
chr3.1 mRNA 80569313 80572026 80569313 ID=MS.gene48488.t1;Parent=MS.gene48488
chr3.1 exon 80569313 80569456 80569313 ID=MS.gene48488.t1.exon1;Parent=MS.gene48488.t1
chr3.1 CDS 80569313 80569456 80569313 ID=cds.MS.gene48488.t1;Parent=MS.gene48488.t1
chr3.1 exon 80570531 80570851 80570531 ID=MS.gene48488.t1.exon2;Parent=MS.gene48488.t1
chr3.1 CDS 80570531 80570851 80570531 ID=cds.MS.gene48488.t1;Parent=MS.gene48488.t1
chr3.1 exon 80570933 80571094 80570933 ID=MS.gene48488.t1.exon3;Parent=MS.gene48488.t1
chr3.1 CDS 80570933 80571094 80570933 ID=cds.MS.gene48488.t1;Parent=MS.gene48488.t1
chr3.1 exon 80571191 80571265 80571191 ID=MS.gene48488.t1.exon4;Parent=MS.gene48488.t1
chr3.1 CDS 80571191 80571265 80571191 ID=cds.MS.gene48488.t1;Parent=MS.gene48488.t1
chr3.1 exon 80571373 80571482 80571373 ID=MS.gene48488.t1.exon5;Parent=MS.gene48488.t1
chr3.1 CDS 80571373 80571482 80571373 ID=cds.MS.gene48488.t1;Parent=MS.gene48488.t1
chr3.1 exon 80571565 80571637 80571565 ID=MS.gene48488.t1.exon6;Parent=MS.gene48488.t1
chr3.1 CDS 80571565 80571637 80571565 ID=cds.MS.gene48488.t1;Parent=MS.gene48488.t1
chr3.1 exon 80571835 80572026 80571835 ID=MS.gene48488.t1.exon7;Parent=MS.gene48488.t1
chr3.1 CDS 80571835 80572026 80571835 ID=cds.MS.gene48488.t1;Parent=MS.gene48488.t1
Gene Sequence

>MS.gene48488

ATGGCTTCTCAGATACTTCGACGAACTCTCGGAAGCCGCTATCTGTCAAACCCTAGGTCCTTCTCTTCCTCCACCACTCCGATTCGTGCCACTCTTTTCCCCGGTGATGGTATTGGTCCCGAGATCGCCGAATCCGTCAAACAGGTCACTTCTCTTTCAATTGGCTTCTTCTGTTGTTGTTTTCTTCGAAACCAGTCATGGCATGTGTCATTTTGTTTTTACTCTTCTTGTCGTAGAAAAACAGCCAAATATGTTTTCCCAAATTTAATTTTATAATTATAATTATATATGATGATTTACCTTGTTTGCTGTTATCTTATTTTAATTGTTGCAATTGACTTAAACCTTTGGAGATAAAACTAGTGTCTTTTTTTTTTTTTTTTTTTTTTAAACTGATACAAATGGGACGTGCCTAATTTGAACTTGAGCTTATAAAGAATTGAGACCTGTCGTTATGTTCATAGGTTTCCTCCAAATGTACTGTAATCATCCATGGTTCAAAATACAGCATCTGGTGATAGTGGTGTGTGTGGGACGAGTAAGTTAGGTCTGTTTGGTTAATGGAGGAGAGGATTTAGAAGGGCTAACTCTATATTTTAAAATATATTTGATATTTATTTTTTTTTCTTTCAAAAAACAACATATTAATGATCATACAATACTTCAGTCACACATTTAAAAACACTGTATAGTGTCAATAATTTAAAAGAGAAAGGTAAGCCCCCTCCCCTCCATCCAAACATACCCTAGGATTGCTGCTATTGGGTGCAAGATACTATAGTTTATGTGCGAGGAGCTCTGCTCTGGGTTGGGTTACGGGGGGTTCTTACTTTTTTTTTTTTTTTTAATGACAAATGTTAGTATGTTGGTTGTTATGTTAGTATTTTCTCCATTGCCAGGATTCAAACCCTGGACATTTACTCCTTCAATCCTTTAATCTCTTAGCACAACCAAGTGAGCTCCCATTCTGTTTTCTTTCGTTGGGTTCCCATCAGTATATTGGTTCATTTTACTTTTCTTTCTTTGTCAATTGTCATGGATGTGGAGTCTGTTTTGCTGCTGAGAGTGGTCACTTTCTAATGTTTGTGATACTTTATTCTTCCTTATATCTCTTGCTTTGTTTGTTTCTTATTGGGAATTATGTATACTCATAATAATTGATTTTCTTTTTTGAATCAAATGTAACTTGATGTCAATTTTTACTATTGCTACAATTAGGTATTCCAAGCTGCTGAAGTTCCAATTGAATGGGAAGAGCATTACGTAGGGACCACAATTGACCCTAGAACACAGAGCTTTCTTACATGGGAAAGTTTAGAATCGGTAAGAAGAAACAGGGTTGGCTTGAAAGGGCCAATGGCTACTCCTATTGGCAAAGGGCATCGTTCATTAAACCTTACTCTAAGAAAAGAACTTAATTTATATGCGAATGTCCGACCTTGTTACAGCCTTCCTGGCTACAAAACTCGATATGACAATGTAGATCTCATCACAATCCGTGAAAATACAGAAGGCGAGTACAGTGGACTTGAACATCAGGTAAATTTCACAATAATCAATATTGCATACTATCATCCAAGTTCTGATCAATTTAATTTATTTAGCATTTTTGGGTTATAGGTTGTGAGGGGTGTCGTAGAAAGTATCAAAATTATTACACGTCAAGCAAGTTTACGAGTGGCTGAGTATGCTTTTCACTATGCCAAGGCACATGGAAGAGAGAGGGTGTCTGCTATACACAAAGCCAACATTATGCAAAAGACTGACGGTCTTTTCCTGAAGGTTCGCTAACACATTCAAATGCCTATAAAATACTCTGTCTCAATTTTTATTCTTGAATACTAGTAATAATGACTGTCTATTTTGAATTATTTTTAGTGTTGCCGTGAGGTTGCTGAAAAATATCCAGAGATAGCATATGAGGAAGTTGTCATTGACAATTGCTGCATGATGGTAATCTTGGTTAACTTGATGAGTTGATGTAGGATATAACTGCATTTTTAAATTTTATTTTATCTATCTGAAAATGATACACTGTTTAATTTTTTTACCATCCACAGCTTGTGAAGAATCCTGCACTTTTTGATGTATTGGTGATGCCTAACCTTTATGGTGATATAATCAGCGACCTTTGTGCTGGCTTGATTGGAGGATTAGGCTTGACACCCAGGTTTTTTGTTTTGTTTTAAATTTTGGGAAAATAAATATAATAGTCGCACAATTATATTATCTGACAATATTATCTTTTCCAGCTGCAACATTGGCGAGGGAGGTATTGCACTTGCTGAGGCTGTACATGGCTCAGCACCTGATATTGCTGGGAAGGTGAGCTGTGGAATTTCTTTTCAACCATATATTATCCGTTTTAAAACTTTATGCTTGTTTTCATGGAATTTATGTTTTTTTAGTGCTTGTGCACCACTTGCATCAAGGACAACCTTCAGATGAACTAAGAAACTTACAATTTTGAATTTGTAATACCTTTAATTAAATTACACTTGTTTTCCTGTGGTTTTATGCAGAATTTGGCAAATCCAACTGCTTTGCTGTTGAGTTCCGTTACCATGTTGCGCCATTTGGATCTCCATGATAAAGCAGATAGTATTCAAAATGCCATCCTCAACACAATTGCAGAAGGAAAGTACCGAACTGCTGATCTTGGTGGCAGTTCAAAGACGACAGAATTTACAAAAGCAATCATTGATCATCTTTGA

Protein sequence

>MS.gene48488.t1

MASQILRRTLGSRYLSNPRSFSSSTTPIRATLFPGDGIGPEIAESVKQVFQAAEVPIEWEEHYVGTTIDPRTQSFLTWESLESVRRNRVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDNVDLITIRENTEGEYSGLEHQVVRGVVESIKIITRQASLRVAEYAFHYAKAHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIAYEEVVIDNCCMMLVKNPALFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLDLHDKADSIQNAILNTIAEGKYRTADLGGSSKTTEFTKAIIDHL