AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene68356


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68356.t1 MTR_5g023740 98.638 367 5 0 1 367 1 367 0.0 743
MS.gene68356.t1 MTR_5g023740 97.548 367 5 1 1 367 1 363 0.0 729
MS.gene68356.t1 MTR_8g074030 88.441 372 37 2 1 367 1 371 0.0 673
MS.gene68356.t1 MTR_8g074030 87.366 372 37 3 1 367 1 367 0.0 660
MS.gene68356.t1 MTR_5g023740 98.195 277 5 0 1 277 1 277 0.0 563
MS.gene68356.t1 MTR_5g023740 98.195 277 5 0 1 277 1 277 0.0 562
MS.gene68356.t1 MTR_5g023740 96.751 277 5 1 1 277 1 273 0.0 551
MS.gene68356.t1 MTR_1g064070 48.634 366 174 5 6 366 2 358 1.03e-118 348
MS.gene68356.t1 MTR_3g101470 48.732 355 169 3 17 366 7 353 1.35e-116 342
MS.gene68356.t1 MTR_2g104610 29.132 357 197 15 32 349 35 374 7.26e-28 113
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68356.t1 AT4G35260 84.973 366 54 1 3 367 2 367 0.0 637
MS.gene68356.t1 AT4G35650 81.421 366 66 1 4 367 3 368 0.0 627
MS.gene68356.t1 AT2G17130 81.967 366 65 1 3 367 2 367 0.0 617
MS.gene68356.t1 AT2G17130 80.874 366 65 2 3 367 2 363 0.0 605
MS.gene68356.t1 AT5G03290 51.190 336 156 2 36 366 42 374 1.75e-117 345
MS.gene68356.t1 AT3G09810 51.190 336 156 4 36 366 42 374 8.08e-113 333
MS.gene68356.t1 AT1G32480 62.500 224 69 5 37 257 2 213 1.16e-90 271
MS.gene68356.t1 AT1G80560 29.630 351 197 13 40 354 45 381 1.48e-30 120
MS.gene68356.t1 AT5G14200 28.792 389 224 16 1 349 5 380 1.59e-30 120
MS.gene68356.t1 AT5G14200 28.792 389 224 16 1 349 5 380 1.63e-30 120
MS.gene68356.t1 AT1G31180 28.974 390 223 16 1 349 1 377 2.74e-30 120
MS.gene68356.t1 AT1G31180 28.974 390 223 16 1 349 16 392 4.45e-30 119
MS.gene68356.t1 AT5G14200 26.596 282 165 10 1 246 5 280 3.38e-13 70.1

Find 107 sgRNAs with CRISPR-Local

Find 366 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGATTCCGTCGCCGGGGATT+AGG 0.169058 5.1:+14426148 None:intergenic
ATGTTGATATTGTTGTTATT+AGG 0.236899 5.1:-14425852 MS.gene68356:CDS
GGGGATTAGGGTTACATTGC+GGG 0.275523 5.1:+14426161 None:intergenic
TGTTGATATTGTTGTTATTA+GGG 0.290952 5.1:-14425851 MS.gene68356:CDS
GCTTGCAGATGGTTTATTCT+TGG 0.304514 5.1:-14423780 MS.gene68356:CDS
GATTCCGTCGCCGGGGATTA+GGG 0.344303 5.1:+14426149 None:intergenic
GTGGGTGAGGTGGTGGCGCG+TGG 0.349708 5.1:+14426227 None:intergenic
AACAAGATTTCCATAAAGAT+TGG 0.353298 5.1:+14422283 None:intergenic
CTTGAACATGAGGTTGTTCC+CGG 0.354977 5.1:-14425802 MS.gene68356:CDS
GCTTGTCAGTTGCTTTAATC+TGG 0.358844 5.1:-14425899 MS.gene68356:CDS
AATACAGCGGCAGGCATTGC+TGG 0.369556 5.1:-14422257 MS.gene68356:CDS
ATTTCATTATACTTGATTCC+AGG 0.392374 5.1:+14423728 None:intergenic
ATCTGGAAGGATTGACTACT+AGG 0.394728 5.1:-14425882 MS.gene68356:CDS
ACAAGATTTCCATAAAGATT+GGG 0.395363 5.1:+14422284 None:intergenic
GGAATCGATTAAGAAGAATA+AGG 0.408209 5.1:-14426013 MS.gene68356:CDS
GGGGTTCCGTCTCCGGGGCG+GGG 0.409508 5.1:+14426183 None:intergenic
GGCATGTAGGTTACGGTACG+GGG 0.414877 5.1:+14426204 None:intergenic
TCCAATCGTTCAGCAAATAC+AGG 0.416645 5.1:+14421238 None:intergenic
GGGATTAGGGTTACATTGCG+GGG 0.421936 5.1:+14426162 None:intergenic
ATGTCTTTGCAGGTAATGTT+GGG 0.422079 5.1:-14421393 MS.gene68356:intron
GGAATCGGCCCTCTCGTAAC+CGG 0.429953 5.1:-14426132 MS.gene68356:CDS
GGGCATGTAGGTTACGGTAC+GGG 0.430343 5.1:+14426203 None:intergenic
CTTGATTCCAGGATACTTTG+TGG 0.435276 5.1:+14423739 None:intergenic
TCCTGTATTTGCTGAACGAT+TGG 0.436123 5.1:-14421239 MS.gene68356:CDS
GCAGGCATTGCTGGAGGCAC+TGG 0.441704 5.1:-14422248 MS.gene68356:CDS
CTAATCCCCGGCGACGGAAT+CGG 0.445934 5.1:-14426147 MS.gene68356:CDS
CGGGGATTAGGGTTACATTG+CGG 0.449437 5.1:+14426160 None:intergenic
AAGAATAAGGTCTGTTTGAA+AGG 0.455164 5.1:-14426000 MS.gene68356:CDS
GTCTCCGGGGCGGGGCATGT+AGG 0.455315 5.1:+14426191 None:intergenic
TCGAATTTCTCGAAGTGCAC+TGG 0.458066 5.1:+14426075 None:intergenic
GGAGGCACTGGTGTCATGCC+GGG 0.461037 5.1:-14422236 MS.gene68356:CDS
TACTGCATCAACAACCTCTT+GGG 0.461914 5.1:+14421147 None:intergenic
GGGTGGTGCTTGTCCCTCCA+AGG 0.470554 5.1:+14421167 None:intergenic
ATCGATTCCATCACTTCAGA+TGG 0.475497 5.1:+14426027 None:intergenic
TTACTGCATCAACAACCTCT+TGG 0.475996 5.1:+14421146 None:intergenic
AGAGGGCCGATTCCGTCGCC+GGG 0.478788 5.1:+14426141 None:intergenic
GCCTGAGCAATTTGATGTCA+TGG 0.486144 5.1:-14423669 MS.gene68356:intron
CTTGTTGCAAATACAGCGGC+AGG 0.486316 5.1:-14422266 MS.gene68356:CDS
AAGGAGAAGTGCCACAGGAT+TGG 0.491158 5.1:+14421294 None:intergenic
AAGGTGTTTGAGGAGGTTTG+TGG 0.493042 5.1:+14426254 None:intergenic
GAGAGGGCCGATTCCGTCGC+CGG 0.493954 5.1:+14426140 None:intergenic
GGATTAGGGTTACATTGCGG+GGG 0.495232 5.1:+14426163 None:intergenic
GTCAGTTGCTTTAATCTGGA+AGG 0.496580 5.1:-14425895 MS.gene68356:CDS
CGGCGCTGTTGAACAAGTAA+TGG 0.501927 5.1:-14426112 MS.gene68356:CDS
TGGAGGCACTGGTGTCATGC+CGG 0.510683 5.1:-14422237 MS.gene68356:CDS
TTGGCGACTCCGATGGGTGG+TGG 0.513125 5.1:-14425973 MS.gene68356:CDS
GAGGTTGCCACAAAGTATCC+TGG 0.516332 5.1:-14423746 MS.gene68356:CDS
AATAAGGTCTGTTTGAAAGG+TGG 0.522695 5.1:-14425997 MS.gene68356:CDS
GCGTGGAGATAAGGTGTTTG+AGG 0.525687 5.1:+14426244 None:intergenic
AATGTCTTTGCAGGTAATGT+TGG 0.527179 5.1:-14421394 MS.gene68356:intron
CAAGATTTCCATAAAGATTG+GGG 0.528612 5.1:+14422285 None:intergenic
GCTTAATTTGCAGCTGAGGA+AGG 0.528655 5.1:-14425941 MS.gene68356:CDS
TGAGCATCATTGCGGAAGAA+AGG 0.530564 5.1:+14421275 None:intergenic
GGGGCGGGGCATGTAGGTTA+CGG 0.533314 5.1:+14426197 None:intergenic
TACATGCCCCGCCCCGGAGA+CGG 0.536211 5.1:-14426189 MS.gene68356:CDS
TTTGAACAAGGTGCTTCCGC+AGG 0.536373 5.1:-14421355 MS.gene68356:CDS
GTTATTAGGGAGAATACTGA+AGG 0.537381 5.1:-14425838 MS.gene68356:CDS
GGTGGTGGCGCGTGGAGATA+AGG 0.541475 5.1:+14426235 None:intergenic
CATTACTTGTTCAACAGCGC+CGG 0.543378 5.1:+14426113 None:intergenic
GGTGGATTGGCGACTCCGAT+GGG 0.544930 5.1:-14425979 MS.gene68356:CDS
TTGAGACTCTCAACGACACC+GGG 0.546059 5.1:+14425784 None:intergenic
GGTCTGTTTGAAAGGTGGAT+TGG 0.550611 5.1:-14425992 MS.gene68356:CDS
AGCGATTCCATCTGAAGTGA+TGG 0.550636 5.1:-14426034 MS.gene68356:CDS
AGGTGGATTGGCGACTCCGA+TGG 0.556949 5.1:-14425980 MS.gene68356:CDS
AACATTATGAAGCTTGCAGA+TGG 0.557251 5.1:-14423791 MS.gene68356:CDS
ACCATGACATCAAATTGCTC+AGG 0.558319 5.1:+14423668 None:intergenic
GGTGCTTCCGCAGGAAATGT+TGG 0.560130 5.1:-14421346 MS.gene68356:CDS
GATTAGGGTTACATTGCGGG+GGG 0.563580 5.1:+14426164 None:intergenic
CGCAATGTAACCCTAATCCC+CGG 0.573917 5.1:-14426159 MS.gene68356:CDS
TTCCGCAGGAAATGTTGGTA+AGG 0.574592 5.1:-14421341 MS.gene68356:CDS
AATACTGAAGGGGAATATGC+TGG 0.581107 5.1:-14425826 MS.gene68356:CDS
CTTGAGACTCTCAACGACAC+CGG 0.585873 5.1:+14425783 None:intergenic
ATTCTTGGAATCTTGTCGAG+AGG 0.590626 5.1:-14423765 MS.gene68356:CDS
GGATTGGCGACTCCGATGGG+TGG 0.593367 5.1:-14425976 MS.gene68356:CDS
GTAACCCTAATCCCCGGCGA+CGG 0.593645 5.1:-14426153 MS.gene68356:CDS
TACAGGACAAAGGACCTTGG+AGG 0.595343 5.1:-14421181 MS.gene68356:CDS
GTATCTAAATAACAGAAAGA+AGG 0.597022 5.1:-14423834 MS.gene68356:CDS
GTTCGCTTAATTTGCAGCTG+AGG 0.597579 5.1:-14425945 MS.gene68356:CDS
GGGGCATGTAGGTTACGGTA+CGG 0.599567 5.1:+14426202 None:intergenic
TGGAGATAAGGTGTTTGAGG+AGG 0.600685 5.1:+14426247 None:intergenic
GCATGTAGGTTACGGTACGG+GGG 0.601867 5.1:+14426205 None:intergenic
GTAACCTACATGCCCCGCCC+CGG 0.604970 5.1:-14426195 MS.gene68356:CDS
GAAGAAAGGAGAAGTGCCAC+AGG 0.610058 5.1:+14421289 None:intergenic
TGCATCAACAACCTCTTGGG+TGG 0.620983 5.1:+14421150 None:intergenic
TCAACAGCGCCGGTTACGAG+AGG 0.623169 5.1:+14426123 None:intergenic
CAACAGCGCCGGTTACGAGA+GGG 0.629447 5.1:+14426124 None:intergenic
TTCGAGAAATTCGAAGTGCA+CGG 0.630058 5.1:-14426066 MS.gene68356:CDS
CGGTGTCGTTGAGAGTCTCA+AGG 0.630865 5.1:-14425782 MS.gene68356:intron
ACAGGACAAAGGACCTTGGA+GGG 0.632351 5.1:-14421180 MS.gene68356:CDS
GGCACTGGTGTCATGCCGGG+AGG 0.634816 5.1:-14422233 MS.gene68356:intron
TATTAGGGAGAATACTGAAG+GGG 0.638863 5.1:-14425836 MS.gene68356:CDS
ACAGCGGCAGGCATTGCTGG+AGG 0.645225 5.1:-14422254 MS.gene68356:CDS
CACCTTGTTCAAATACAGCA+TGG 0.646572 5.1:+14421365 None:intergenic
AAGTACAGGACAAAGGACCT+TGG 0.646920 5.1:-14421184 MS.gene68356:CDS
TTCCTTACCAACATTTCCTG+CGG 0.649166 5.1:+14421339 None:intergenic
TTATTAGGGAGAATACTGAA+GGG 0.651297 5.1:-14425837 MS.gene68356:CDS
ATATGCTGGTCTTGAACATG+AGG 0.652648 5.1:-14425812 MS.gene68356:CDS
TGTCTTTGCAGGTAATGTTG+GGG 0.652865 5.1:-14421392 MS.gene68356:intron
AGAGGGTAAGTACAGGACAA+AGG 0.652879 5.1:-14421191 MS.gene68356:CDS
GAACTAACACCACCACCCAT+CGG 0.665416 5.1:+14425964 None:intergenic
AAGATTTCCATAAAGATTGG+GGG 0.670781 5.1:+14422286 None:intergenic
GACCATGCTGTATTTGAACA+AGG 0.680946 5.1:-14421367 MS.gene68356:CDS
AAGATGTCTGAGCATCATTG+CGG 0.685294 5.1:+14421267 None:intergenic
GAGGGCCGATTCCGTCGCCG+GGG 0.686332 5.1:+14426142 None:intergenic
AGGGACAAGCACCACCCAAG+AGG 0.691399 5.1:-14421161 MS.gene68356:CDS
AGAAAAGAAAGCCAATCCTG+TGG 0.714161 5.1:-14421305 MS.gene68356:CDS
AAATCTTGTTGCAAATACAG+CGG 0.734643 5.1:-14422270 MS.gene68356:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTAAATAAAAAAATT+TGG - chr5.1:14423839-14423858 MS.gene68356:CDS 0.0%
!! TAATTAAATATGATAAAAGT+TGG + chr5.1:14422973-14422992 None:intergenic 10.0%
!! TTGTAATAATGAATATAAAA+GGG - chr5.1:14424919-14424938 MS.gene68356:intron 10.0%
!! TTTGTAATAATGAATATAAA+AGG - chr5.1:14424918-14424937 MS.gene68356:intron 10.0%
!!! TTTTTTTTTGCTTATAATAT+GGG - chr5.1:14423188-14423207 MS.gene68356:intron 10.0%
!!! TTTTTTTTTTGCTTATAATA+TGG - chr5.1:14423187-14423206 MS.gene68356:intron 10.0%
!! ATATAATACATTCATTCTTA+CGG - chr5.1:14422805-14422824 MS.gene68356:intron 15.0%
!! ATTCTAATGAAAATATAGAT+AGG - chr5.1:14425864-14425883 MS.gene68356:CDS 15.0%
!! CATATAATTAGATTAAACTA+GGG + chr5.1:14424730-14424749 None:intergenic 15.0%
!! TCATATAATTAGATTAAACT+AGG + chr5.1:14424731-14424750 None:intergenic 15.0%
!! TGTAATAATGAATATAAAAG+GGG - chr5.1:14424920-14424939 MS.gene68356:intron 15.0%
!! TTCTAATGAAAATATAGATA+GGG - chr5.1:14425865-14425884 MS.gene68356:CDS 15.0%
!!! CATCATAATTTTTTTAACAT+AGG - chr5.1:14424702-14424721 MS.gene68356:intron 15.0%
!!! GTTTTTTTTGCTTATAATTT+AGG + chr5.1:14422915-14422934 None:intergenic 15.0%
!!! TATATTTCCTTTTATTACTT+TGG - chr5.1:14423925-14423944 MS.gene68356:intron 15.0%
!!! TATTTAATTAGGTTTTGATA+TGG - chr5.1:14424811-14424830 MS.gene68356:intron 15.0%
!!! TTTAATCAATCACTATATTT+TGG + chr5.1:14425435-14425454 None:intergenic 15.0%
!! AAGACTCAAATAATTATCTT+TGG + chr5.1:14424061-14424080 None:intergenic 20.0%
!! AATATTCAAATGTGATAGTT+TGG + chr5.1:14421779-14421798 None:intergenic 20.0%
!! GAATATACTTTGTATTTAAC+AGG - chr5.1:14422500-14422519 MS.gene68356:intron 20.0%
!! GTTTAATCTAATTATATGAG+AGG - chr5.1:14424732-14424751 MS.gene68356:intron 20.0%
!! TAATTCTCCAAAGTAATAAA+AGG + chr5.1:14423935-14423954 None:intergenic 20.0%
!! TATCTATACAGCAAATATAA+AGG + chr5.1:14423389-14423408 None:intergenic 20.0%
!! TCAATGAAAACAAAAAATAG+AGG - chr5.1:14425470-14425489 MS.gene68356:intron 20.0%
!! TTACAATAAACAACCTTTAA+AGG + chr5.1:14423307-14423326 None:intergenic 20.0%
!! TTCCTATAAAACTTATTTCA+AGG - chr5.1:14423107-14423126 MS.gene68356:intron 20.0%
!! TTCTTTCAATCAATTATTTC+AGG - chr5.1:14425382-14425401 MS.gene68356:intron 20.0%
!! TTGAAATTAAGAAAACATTG+AGG - chr5.1:14424973-14424992 MS.gene68356:intron 20.0%
!! TTGAAATTTGAATCATTTCA+TGG - chr5.1:14422292-14422311 MS.gene68356:CDS 20.0%
!! TTTCTTAACAATTTCTCTTA+TGG + chr5.1:14422029-14422048 None:intergenic 20.0%
!!! AATGTTTTCTTAATTTCAAG+TGG + chr5.1:14424972-14424991 None:intergenic 20.0%
!!! ATCCTTGAAATAAGTTTTAT+AGG + chr5.1:14423112-14423131 None:intergenic 20.0%
!!! ATGTTGATATTGTTGTTATT+AGG - chr5.1:14421547-14421566 MS.gene68356:intron 20.0%
!!! CAAAAAATTATCTTTTCCAA+AGG - chr5.1:14423001-14423020 MS.gene68356:intron 20.0%
!!! GTCTTTTTTGCTTATAATTT+GGG + chr5.1:14422951-14422970 None:intergenic 20.0%
!!! TGTTGATATTGTTGTTATTA+GGG - chr5.1:14421548-14421567 MS.gene68356:intron 20.0%
!!! TTAACTTTTGTCATTTGAAA+AGG - chr5.1:14424778-14424797 MS.gene68356:intron 20.0%
!!! TTTTTGAAAGCAAATTAAAC+AGG - chr5.1:14424129-14424148 MS.gene68356:intron 20.0%
!!! TTTTTGCTTATAATTTAGGA+CGG + chr5.1:14422911-14422930 None:intergenic 20.0%
! AAAAAGAAAATCTAGGAAGA+AGG - chr5.1:14424633-14424652 MS.gene68356:intron 25.0%
! AAAAATGTTTAAACAAGTGC+TGG + chr5.1:14423824-14423843 None:intergenic 25.0%
! AAAATCAAAAGCAAAATGAC+TGG + chr5.1:14425054-14425073 None:intergenic 25.0%
! AAATCAAAAGCAAAATGACT+GGG + chr5.1:14425053-14425072 None:intergenic 25.0%
! AACAAGATTTCCATAAAGAT+TGG + chr5.1:14425119-14425138 None:intergenic 25.0%
! ACAAGATTTCCATAAAGATT+GGG + chr5.1:14425118-14425137 None:intergenic 25.0%
! ATACACTGCTAAAATATTGA+AGG + chr5.1:14425687-14425706 None:intergenic 25.0%
! ATGAAAACAAAAAATAGAGG+TGG - chr5.1:14425473-14425492 MS.gene68356:intron 25.0%
! ATTTCATTATACTTGATTCC+AGG + chr5.1:14423674-14423693 None:intergenic 25.0%
! ATTTGATAAGAAAAATGCCA+CGG + chr5.1:14425254-14425273 None:intergenic 25.0%
! CCAAAAGTGGATAAATAATT+GGG + chr5.1:14423784-14423803 None:intergenic 25.0%
! GATGTAAAAACAATTTCCAT+TGG + chr5.1:14423087-14423106 None:intergenic 25.0%
! GTATCTAAATAACAGAAAGA+AGG - chr5.1:14423565-14423584 MS.gene68356:intron 25.0%
! GTTGGATGTTGTATTTAATT+AGG - chr5.1:14424800-14424819 MS.gene68356:intron 25.0%
! TAATCTTGATACAATCAAGA+TGG - chr5.1:14421806-14421825 MS.gene68356:intron 25.0%
! TTAGTAATATTTATACCTCC+CGG + chr5.1:14425184-14425203 None:intergenic 25.0%
! TTATTGTCGTGAGTTAATAA+GGG + chr5.1:14422118-14422137 None:intergenic 25.0%
! TTCCCATCTACAAATTAATT+AGG - chr5.1:14422587-14422606 MS.gene68356:intron 25.0%
! TTTATTGTCGTGAGTTAATA+AGG + chr5.1:14422119-14422138 None:intergenic 25.0%
!! AAACAATTTCCATTGGTTAT+TGG + chr5.1:14423080-14423099 None:intergenic 25.0%
!! ATGTATAATTTGCGTGTTTA+TGG - chr5.1:14422428-14422447 MS.gene68356:intron 25.0%
!! ATTAGGAGGTTTAATTTCTT+CGG - chr5.1:14422604-14422623 MS.gene68356:intron 25.0%
!! GTTACAGTTAAGTGATTTTT+CGG - chr5.1:14422164-14422183 MS.gene68356:intron 25.0%
!! TTGTTAGACATATTTTGCAT+CGG - chr5.1:14422549-14422568 MS.gene68356:intron 25.0%
!!! CTCCTAATTAATTTGTAGAT+GGG + chr5.1:14422592-14422611 None:intergenic 25.0%
!!! CTTTGCATTTAATTTTCCTT+TGG + chr5.1:14423020-14423039 None:intergenic 25.0%
!!! GAAGGTTGATTTTTCATTAA+TGG + chr5.1:14425669-14425688 None:intergenic 25.0%
!!! GGTCTTTTTTGCTTATAATT+TGG + chr5.1:14422952-14422971 None:intergenic 25.0%
AAATCTTGTTGCAAATACAG+CGG - chr5.1:14425129-14425148 MS.gene68356:intron 30.0%
AAGAATAAGGTCTGTTTGAA+AGG - chr5.1:14421399-14421418 MS.gene68356:intron 30.0%
AAGATTTCCATAAAGATTGG+GGG + chr5.1:14425116-14425135 None:intergenic 30.0%
AATAGTATCTTGCTTCCATA+TGG - chr5.1:14425271-14425290 MS.gene68356:intron 30.0%
AATCGAGATATTCAAGCTTA+AGG + chr5.1:14425976-14425995 None:intergenic 30.0%
AATTTCTCTTATGGTTCTCT+AGG + chr5.1:14422020-14422039 None:intergenic 30.0%
AGGAAATATAAACAGACACA+TGG + chr5.1:14423915-14423934 None:intergenic 30.0%
ATAAACATATCAGCCAAAAG+TGG + chr5.1:14423797-14423816 None:intergenic 30.0%
ATTCATTTATCTTCCTCAAC+AGG - chr5.1:14425515-14425534 MS.gene68356:intron 30.0%
ATTTGAATCATTTCATGGCT+AGG - chr5.1:14422297-14422316 MS.gene68356:intron 30.0%
CAAGATTTCCATAAAGATTG+GGG + chr5.1:14425117-14425136 None:intergenic 30.0%
CCATCTACAAATTAATTAGG+AGG - chr5.1:14422590-14422609 MS.gene68356:intron 30.0%
CTGCTAATTTGAGTAATTTC+TGG - chr5.1:14424510-14424529 MS.gene68356:intron 30.0%
CTTTAGTTGAGTCAAATAAC+GGG - chr5.1:14425796-14425815 MS.gene68356:CDS 30.0%
CTTTCTTGCTAGTAATTGAT+TGG - chr5.1:14425020-14425039 MS.gene68356:intron 30.0%
GAATGAAACAGTATTTGTGT+AGG - chr5.1:14424655-14424674 MS.gene68356:intron 30.0%
GATATTCAAGCTTAAGGTTA+AGG + chr5.1:14425970-14425989 None:intergenic 30.0%
GCCAAAAGTGGATAAATAAT+TGG + chr5.1:14423785-14423804 None:intergenic 30.0%
GCTAACTAAAAGAAAAGTAG+TGG - chr5.1:14422864-14422883 MS.gene68356:intron 30.0%
GCTTTAGTTGAGTCAAATAA+CGG - chr5.1:14425795-14425814 MS.gene68356:CDS 30.0%
GGAAATATAAACAGACACAT+GGG + chr5.1:14423914-14423933 None:intergenic 30.0%
GGAAATTTCCAATCATCTTT+GGG - chr5.1:14422826-14422845 MS.gene68356:intron 30.0%
GGAATCGATTAAGAAGAATA+AGG - chr5.1:14421386-14421405 MS.gene68356:intron 30.0%
GGACTATTCTTTAAATGTAG+AGG - chr5.1:14423356-14423375 MS.gene68356:intron 30.0%
GGATAAATAATTGGGATTCA+GGG + chr5.1:14423776-14423795 None:intergenic 30.0%
TATTACCAGTGAATGCAATA+CGG + chr5.1:14422774-14422793 None:intergenic 30.0%
TCAAATTAGCAGAAACAGAA+AGG + chr5.1:14424502-14424521 None:intergenic 30.0%
TCATCTCACAAGAAAAAACT+TGG - chr5.1:14422372-14422391 MS.gene68356:intron 30.0%
TCTCAATAACCAATAACCAA+TGG - chr5.1:14423068-14423087 MS.gene68356:intron 30.0%
TGGATAAATAATTGGGATTC+AGG + chr5.1:14423777-14423796 None:intergenic 30.0%
TTATTAGGGAGAATACTGAA+GGG - chr5.1:14421562-14421581 MS.gene68356:intron 30.0%
TTTAGTTGAGTCAAATAACG+GGG - chr5.1:14425797-14425816 MS.gene68356:CDS 30.0%
! AAGAATAGTCCTCTAAGAAA+CGG + chr5.1:14423347-14423366 None:intergenic 30.0%
! AATGCTATTTGGTAATATGC+GGG - chr5.1:14422685-14422704 MS.gene68356:intron 30.0%
! AATGGTAGTGACAACATAAT+TGG - chr5.1:14425586-14425605 MS.gene68356:intron 30.0%
! ATTTTGCATCGGAAATTTGT+GGG - chr5.1:14422560-14422579 MS.gene68356:intron 30.0%
! CCCAATTATTTATCCACTTT+TGG - chr5.1:14423781-14423800 MS.gene68356:CDS 30.0%
! CTAGATTTTCTTTTTGTGCA+GGG + chr5.1:14424628-14424647 None:intergenic 30.0%
! GAATGCTATTTGGTAATATG+CGG - chr5.1:14422684-14422703 MS.gene68356:intron 30.0%
! GTTTAATTTCTTCGGTGAAA+TGG - chr5.1:14422612-14422631 MS.gene68356:intron 30.0%
! TATTTTGCATCGGAAATTTG+TGG - chr5.1:14422559-14422578 MS.gene68356:intron 30.0%
! TGTATGAGATTTTCTATCGT+TGG - chr5.1:14424090-14424109 MS.gene68356:intron 30.0%
!! AGTATCTATTTCTGTTGAAC+TGG + chr5.1:14424847-14424866 None:intergenic 30.0%
!! ATTTGGTGCTATTAGTTTGT+TGG - chr5.1:14423856-14423875 MS.gene68356:CDS 30.0%
!! ATTTGTTATACTTCCTCAGA+GGG + chr5.1:14424889-14424908 None:intergenic 30.0%
!! CCTCCTAATTAATTTGTAGA+TGG + chr5.1:14422593-14422612 None:intergenic 30.0%
!! CTTTTGTCATTTGAAAAGGT+TGG - chr5.1:14424782-14424801 MS.gene68356:intron 30.0%
!!! ATGAAGGAAACTTTTTTGAG+AGG - chr5.1:14424200-14424219 MS.gene68356:intron 30.0%
!!! GATTTTTTTGTTCTCGAAAG+CGG - chr5.1:14422654-14422673 MS.gene68356:intron 30.0%
AAACAGTATTTGTGTAGGAC+AGG - chr5.1:14424660-14424679 MS.gene68356:intron 35.0%
AACAGTATTTGTGTAGGACA+GGG - chr5.1:14424661-14424680 MS.gene68356:intron 35.0%
AACATTATGAAGCTTGCAGA+TGG - chr5.1:14423608-14423627 MS.gene68356:intron 35.0%
AAGATGTGGAAATTCGACTT+AGG - chr5.1:14421905-14421924 MS.gene68356:intron 35.0%
AATAAGGTCTGTTTGAAAGG+TGG - chr5.1:14421402-14421421 MS.gene68356:intron 35.0%
AATGTCTTTGCAGGTAATGT+TGG - chr5.1:14426005-14426024 MS.gene68356:CDS 35.0%
AGATATTTCCCGTTTCTTAG+AGG - chr5.1:14423335-14423354 MS.gene68356:intron 35.0%
AGCTTGAATATCTCGATTCA+TGG - chr5.1:14425978-14425997 MS.gene68356:CDS 35.0%
AGGAATGACAACATTAGAGA+GGG - chr5.1:14421857-14421876 MS.gene68356:intron 35.0%
AGGTGGTATAGAAATCAAAC+TGG - chr5.1:14425490-14425509 MS.gene68356:intron 35.0%
ATGTCTTTGCAGGTAATGTT+GGG - chr5.1:14426006-14426025 MS.gene68356:CDS 35.0%
ATTACCAGTGAATGCAATAC+GGG + chr5.1:14422773-14422792 None:intergenic 35.0%
ATTCAAGCTTAAGGTTAAGG+TGG + chr5.1:14425967-14425986 None:intergenic 35.0%
ATTTCCAAGTCCTTAGAAAC+TGG - chr5.1:14422722-14422741 MS.gene68356:intron 35.0%
CAAGAAAAAACTTGGATTGC+TGG - chr5.1:14422380-14422399 MS.gene68356:intron 35.0%
CATTTATCCAGTGATTTCTG+TGG + chr5.1:14424005-14424024 None:intergenic 35.0%
CCTAGCAAAATTTGAGTATG+AGG + chr5.1:14423493-14423512 None:intergenic 35.0%
CCTGCACAAAAAGAAAATCT+AGG - chr5.1:14424626-14424645 MS.gene68356:intron 35.0%
CGGAAATTTCCAATCATCTT+TGG - chr5.1:14422825-14422844 MS.gene68356:intron 35.0%
GAAAATATAGATAGGGCAGT+TGG - chr5.1:14425872-14425891 MS.gene68356:CDS 35.0%
GAAAGCAAATTAAACAGGAG+TGG - chr5.1:14424134-14424153 MS.gene68356:intron 35.0%
GAATACTTATTGGGTAGCAA+AGG + chr5.1:14424596-14424615 None:intergenic 35.0%
GGATAAGAGAACTTACTAGA+GGG - chr5.1:14421978-14421997 MS.gene68356:intron 35.0%
GTTATTAGGGAGAATACTGA+AGG - chr5.1:14421561-14421580 MS.gene68356:intron 35.0%
GTTTATCATCTGAGAAGCTA+AGG + chr5.1:14422751-14422770 None:intergenic 35.0%
TAGGAATGACAACATTAGAG+AGG - chr5.1:14421856-14421875 MS.gene68356:intron 35.0%
TATTAGGGAGAATACTGAAG+GGG - chr5.1:14421563-14421582 MS.gene68356:intron 35.0%
TCAAGTATCCCAAAGATGAT+TGG + chr5.1:14422837-14422856 None:intergenic 35.0%
TCTTGATACAATCAAGATGG+TGG - chr5.1:14421809-14421828 MS.gene68356:intron 35.0%
TGCTTATAATATGGGACAGA+GGG - chr5.1:14423196-14423215 MS.gene68356:intron 35.0%
TGGATAAGAGAACTTACTAG+AGG - chr5.1:14421977-14421996 MS.gene68356:intron 35.0%
TGGCTCGTTGAATACTTATT+GGG + chr5.1:14424605-14424624 None:intergenic 35.0%
TTAAACAACAGAGAAACCCA+TGG + chr5.1:14423968-14423987 None:intergenic 35.0%
TTCTATGAGTACTCACTCAT+TGG - chr5.1:14422262-14422281 MS.gene68356:CDS 35.0%
TTGCTTATAATATGGGACAG+AGG - chr5.1:14423195-14423214 MS.gene68356:intron 35.0%
! AATTGCTTGTACCTTTTGCA+TGG - chr5.1:14422466-14422485 MS.gene68356:intron 35.0%
! AGAATAGTCCTCTAAGAAAC+GGG + chr5.1:14423346-14423365 None:intergenic 35.0%
! CCTAGATTTTCTTTTTGTGC+AGG + chr5.1:14424629-14424648 None:intergenic 35.0%
! CCTCATACTCAAATTTTGCT+AGG - chr5.1:14423490-14423509 MS.gene68356:intron 35.0%
! CTCTGAGGAAGTATAACAAA+TGG - chr5.1:14424888-14424907 MS.gene68356:intron 35.0%
! CTTTTGCATGGTAGATAACT+CGG - chr5.1:14422478-14422497 MS.gene68356:intron 35.0%
! GTAGAAATTGTGATAACGTG+TGG - chr5.1:14422232-14422251 MS.gene68356:intron 35.0%
! TGCTTATAATTTAGGACGGA+GGG + chr5.1:14422907-14422926 None:intergenic 35.0%
! TTGCTTATAATTTAGGACGG+AGG + chr5.1:14422908-14422927 None:intergenic 35.0%
! TTTCTTCGGTGAAATGGATT+CGG - chr5.1:14422618-14422637 MS.gene68356:intron 35.0%
! TTTTGCATCGGAAATTTGTG+GGG - chr5.1:14422561-14422580 MS.gene68356:intron 35.0%
!! ATCATCTTTGGGATACTTGA+TGG - chr5.1:14422837-14422856 MS.gene68356:intron 35.0%
!! CATTTGTTATACTTCCTCAG+AGG + chr5.1:14424890-14424909 None:intergenic 35.0%
!! CTATCGTTGGTTCAATCAAA+AGG - chr5.1:14424103-14424122 MS.gene68356:intron 35.0%
!! GTGAAACGAGTCATTTTAGA+GGG - chr5.1:14426191-14426210 MS.gene68356:CDS 35.0%
!! TAAACACTATTTCTGCTTGC+AGG - chr5.1:14425087-14425106 MS.gene68356:intron 35.0%
!! TCATTTTAGAGGGTAAGTAC+AGG - chr5.1:14426201-14426220 MS.gene68356:CDS 35.0%
!! TGTGAAACGAGTCATTTTAG+AGG - chr5.1:14426190-14426209 MS.gene68356:CDS 35.0%
!!! CTTTTTTGAGAGGATAACGA+AGG - chr5.1:14424210-14424229 MS.gene68356:intron 35.0%
!!! TTGCTGGCTTTTAGATGAAT+TGG - chr5.1:14422396-14422415 MS.gene68356:intron 35.0%
AAATTCGACTTAGGCGGTTT+GGG - chr5.1:14421914-14421933 MS.gene68356:intron 40.0%
AAGATGTCTGAGCATCATTG+CGG + chr5.1:14426135-14426154 None:intergenic 40.0%
AATACTGAAGGGGAATATGC+TGG - chr5.1:14421573-14421592 MS.gene68356:intron 40.0%
ACAACATTAGAGAGGGAGTT+GGG - chr5.1:14421864-14421883 MS.gene68356:intron 40.0%
ACCATGACATCAAATTGCTC+AGG + chr5.1:14423734-14423753 None:intergenic 40.0%
ACCTTGACATTGTGACATGT+GGG - chr5.1:14423455-14423474 MS.gene68356:intron 40.0%
AGAAAAGAAAGCCAATCCTG+TGG - chr5.1:14426094-14426113 MS.gene68356:CDS 40.0%
ATACTTCCTCAGAGGGATAA+AGG + chr5.1:14424882-14424901 None:intergenic 40.0%
ATCTGGAAGGATTGACTACT+AGG - chr5.1:14421517-14421536 MS.gene68356:intron 40.0%
ATGTGGAAATTCGACTTAGG+CGG - chr5.1:14421908-14421927 MS.gene68356:intron 40.0%
ATTCTTGGAATCTTGTCGAG+AGG - chr5.1:14423634-14423653 MS.gene68356:intron 40.0%
CACCTTGTTCAAATACAGCA+TGG + chr5.1:14426037-14426056 None:intergenic 40.0%
CATGGATGAAATGTCTTTGC+AGG - chr5.1:14425996-14426015 MS.gene68356:CDS 40.0%
CCACTGTTGATGTCCTTTAA+AGG - chr5.1:14423291-14423310 MS.gene68356:intron 40.0%
CGAGTTATCTACCATGCAAA+AGG + chr5.1:14422480-14422499 None:intergenic 40.0%
CGGTGATAGAGAATGCTATT+TGG - chr5.1:14422674-14422693 MS.gene68356:intron 40.0%
CTAGCCATTTGCTTATCTCT+GGG - chr5.1:14424159-14424178 MS.gene68356:intron 40.0%
CTCCTTACCAAAGAATCAAC+AGG + chr5.1:14421955-14421974 None:intergenic 40.0%
CTTGATTCCAGGATACTTTG+TGG + chr5.1:14423663-14423682 None:intergenic 40.0%
GACCATGCTGTATTTGAACA+AGG - chr5.1:14426032-14426051 MS.gene68356:CDS 40.0%
GCTTGCAGATGGTTTATTCT+TGG - chr5.1:14423619-14423638 MS.gene68356:intron 40.0%
GTGGCTCGTTGAATACTTAT+TGG + chr5.1:14424606-14424625 None:intergenic 40.0%
TAAACCCGTATTGCATTCAC+TGG - chr5.1:14422766-14422785 MS.gene68356:intron 40.0%
TACTGCATCAACAACCTCTT+GGG + chr5.1:14426255-14426274 None:intergenic 40.0%
TAGCCATTTGCTTATCTCTG+GGG - chr5.1:14424160-14424179 MS.gene68356:intron 40.0%
TCATAACGACAGTGACCATA+TGG + chr5.1:14425289-14425308 None:intergenic 40.0%
TCCAATCGTTCAGCAAATAC+AGG + chr5.1:14426164-14426183 None:intergenic 40.0%
TCTGTTGAACTGGCACAATA+TGG + chr5.1:14424837-14424856 None:intergenic 40.0%
TGATTCTTTGGTAAGGAGAG+TGG - chr5.1:14421957-14421976 MS.gene68356:intron 40.0%
TGCTCTCTTTGTAGTTACTG+TGG - chr5.1:14424422-14424441 MS.gene68356:intron 40.0%
TGGGGGCAATAACATAATGA+AGG - chr5.1:14424184-14424203 MS.gene68356:intron 40.0%
TGTCGTTATGAGATGTGTGA+GGG - chr5.1:14425298-14425317 MS.gene68356:intron 40.0%
TGTCTTTGCAGGTAATGTTG+GGG - chr5.1:14426007-14426026 MS.gene68356:CDS 40.0%
TTACTGCATCAACAACCTCT+TGG + chr5.1:14426256-14426275 None:intergenic 40.0%
TTCCTTACCAACATTTCCTG+CGG + chr5.1:14426063-14426082 None:intergenic 40.0%
TTCGAGAAATTCGAAGTGCA+CGG - chr5.1:14421333-14421352 MS.gene68356:CDS 40.0%
! ATCGATTCCATCACTTCAGA+TGG + chr5.1:14421375-14421394 None:intergenic 40.0%
! CAAGTTGACGGGATATGATT+AGG - chr5.1:14421837-14421856 MS.gene68356:intron 40.0%
! CCTTTAAAGGACATCAACAG+TGG + chr5.1:14423294-14423313 None:intergenic 40.0%
! GATTTTCTTTTTGTGCAGGG+TGG + chr5.1:14424625-14424644 None:intergenic 40.0%
! GCTTGTCAGTTGCTTTAATC+TGG - chr5.1:14421500-14421519 MS.gene68356:intron 40.0%
! GTCAGTTGCTTTAATCTGGA+AGG - chr5.1:14421504-14421523 MS.gene68356:intron 40.0%
! TCCTGTATTTGCTGAACGAT+TGG - chr5.1:14426160-14426179 MS.gene68356:CDS 40.0%
! TTCTTCGGTGAAATGGATTC+GGG - chr5.1:14422619-14422638 MS.gene68356:intron 40.0%
! TTGAGTCAAATAACGGGGAT+GGG - chr5.1:14425802-14425821 MS.gene68356:CDS 40.0%
!! ATATGCTGGTCTTGAACATG+AGG - chr5.1:14421587-14421606 MS.gene68356:intron 40.0%
!! ATGGTGGAAACTCAAGTTGA+CGG - chr5.1:14421825-14421844 MS.gene68356:intron 40.0%
!! GACCTGTTGATTCTTTGGTA+AGG - chr5.1:14421950-14421969 MS.gene68356:intron 40.0%
!! GAGAAGACCTGTTGATTCTT+TGG - chr5.1:14421945-14421964 MS.gene68356:intron 40.0%
AAGTACAGGACAAAGGACCT+TGG - chr5.1:14426215-14426234 MS.gene68356:CDS 45.0%
ACCCACATGTCACAATGTCA+AGG + chr5.1:14423459-14423478 None:intergenic 45.0%
ACTTCTGCCACAGAAATCAC+TGG - chr5.1:14423995-14424014 MS.gene68356:intron 45.0%
AGAATTAGTGCCAACTGCCA+TGG - chr5.1:14423948-14423967 MS.gene68356:intron 45.0%
AGAGGGTAAGTACAGGACAA+AGG - chr5.1:14426208-14426227 MS.gene68356:CDS 45.0%
AGCCATTTGCTTATCTCTGG+GGG - chr5.1:14424161-14424180 MS.gene68356:intron 45.0%
ATGAGTACTCACTCATTGGC+TGG - chr5.1:14422266-14422285 MS.gene68356:CDS 45.0%
CAAATGCTGGAGAGAAGATG+TGG - chr5.1:14421891-14421910 MS.gene68356:intron 45.0%
CAACATTAGAGAGGGAGTTG+GGG - chr5.1:14421865-14421884 MS.gene68356:intron 45.0%
CACCTTGACATTGTGACATG+TGG - chr5.1:14423454-14423473 MS.gene68356:intron 45.0%
CAGGTTACCCCCAATCTTTA+TGG - chr5.1:14425106-14425125 MS.gene68356:intron 45.0%
CATTACTTGTTCAACAGCGC+CGG + chr5.1:14421289-14421308 None:intergenic 45.0%
CTATCTCCTTTATCCCTCTG+AGG - chr5.1:14424873-14424892 MS.gene68356:intron 45.0%
CTGTCGTTATGAGATGTGTG+AGG - chr5.1:14425297-14425316 MS.gene68356:intron 45.0%
CTTGAACATGAGGTTGTTCC+CGG - chr5.1:14421597-14421616 MS.gene68356:intron 45.0%
GAAATTCGACTTAGGCGGTT+TGG - chr5.1:14421913-14421932 MS.gene68356:intron 45.0%
GAATTAGTGCCAACTGCCAT+GGG - chr5.1:14423949-14423968 MS.gene68356:intron 45.0%
GACAACATTAGAGAGGGAGT+TGG - chr5.1:14421863-14421882 MS.gene68356:intron 45.0%
GACGATACATCACACATACG+AGG - chr5.1:14422074-14422093 MS.gene68356:intron 45.0%
GCCTGAGCAATTTGATGTCA+TGG - chr5.1:14423730-14423749 MS.gene68356:CDS 45.0%
GCTAGCCATTTGCTTATCTC+TGG - chr5.1:14424158-14424177 MS.gene68356:intron 45.0%
GCTCTCATTTGATTATGCCG+TGG - chr5.1:14425234-14425253 MS.gene68356:intron 45.0%
GGTCTGTTTGAAAGGTGGAT+TGG - chr5.1:14421407-14421426 MS.gene68356:intron 45.0%
GTCGTTATGAGATGTGTGAG+GGG - chr5.1:14425299-14425318 MS.gene68356:intron 45.0%
TCCAAGTCCTTAGAAACTGG+TGG - chr5.1:14422725-14422744 MS.gene68356:intron 45.0%
TCGAATTTCTCGAAGTGCAC+TGG + chr5.1:14421327-14421346 None:intergenic 45.0%
TCGTTATGAGATGTGTGAGG+GGG - chr5.1:14425300-14425319 MS.gene68356:intron 45.0%
TGAGCATCATTGCGGAAGAA+AGG + chr5.1:14426127-14426146 None:intergenic 45.0%
TGATGCCATCACTGTTTCCA+AGG + chr5.1:14424687-14424706 None:intergenic 45.0%
TTCCGCAGGAAATGTTGGTA+AGG - chr5.1:14426058-14426077 MS.gene68356:CDS 45.0%
TTCCTCAACAGGTTGCAGTA+TGG - chr5.1:14425526-14425545 MS.gene68356:intron 45.0%
! AAGGTGTTTGAGGAGGTTTG+TGG + chr5.1:14421148-14421167 None:intergenic 45.0%
! AGCGATTCCATCTGAAGTGA+TGG - chr5.1:14421365-14421384 MS.gene68356:CDS 45.0%
! AGTTTTCTCGTCAGTCGTTG+AGG - chr5.1:14425745-14425764 MS.gene68356:intron 45.0%
! ATTTGCTTATCTCTGGGGGT+GGG - chr5.1:14424165-14424184 MS.gene68356:intron 45.0%
! GTTGAGTCAAATAACGGGGA+TGG - chr5.1:14425801-14425820 MS.gene68356:CDS 45.0%
! TGAGTACTCACTCATTGGCT+GGG - chr5.1:14422267-14422286 MS.gene68356:CDS 45.0%
! TGGAGATAAGGTGTTTGAGG+AGG + chr5.1:14421155-14421174 None:intergenic 45.0%
!! CTAGACTCAACAGTTCTGAG+TGG + chr5.1:14425332-14425351 None:intergenic 45.0%
!! GCTTAATTTGCAGCTGAGGA+AGG - chr5.1:14421458-14421477 MS.gene68356:intron 45.0%
!! GGGGTAATGGAGTTGTCAAA+TGG - chr5.1:14425568-14425587 MS.gene68356:intron 45.0%
!! GTTCGCTTAATTTGCAGCTG+AGG - chr5.1:14421454-14421473 MS.gene68356:intron 45.0%
!! TGGATTCGGGTTGCAAGTTT+AGG - chr5.1:14422632-14422651 MS.gene68356:intron 45.0%
!! TGGTGGAAACTCAAGTTGAC+GGG - chr5.1:14421826-14421845 MS.gene68356:intron 45.0%
!! TTATTAAGTTAATTAATTAA+TGG - chr5.1:14421705-14421724 MS.gene68356:intron 5.0%
ACAGAGAAACCCATGGCAGT+TGG + chr5.1:14423961-14423980 None:intergenic 50.0%
ACAGGACAAAGGACCTTGGA+GGG - chr5.1:14426219-14426238 MS.gene68356:CDS 50.0%
ATTTGTGTAGGACAGGGCCT+TGG - chr5.1:14424667-14424686 MS.gene68356:intron 50.0%
CACCCCCAGAGATAAGCAAA+TGG + chr5.1:14424166-14424185 None:intergenic 50.0%
CGCAATGTAACCCTAATCCC+CGG - chr5.1:14421240-14421259 MS.gene68356:CDS 50.0%
CGGCGCTGTTGAACAAGTAA+TGG - chr5.1:14421287-14421306 MS.gene68356:CDS 50.0%
CGGGGATTAGGGTTACATTG+CGG + chr5.1:14421242-14421261 None:intergenic 50.0%
CTCAACAGGTTGCAGTATGG+AGG - chr5.1:14425529-14425548 MS.gene68356:intron 50.0%
CTCCATACTGCAACCTGTTG+AGG + chr5.1:14425531-14425550 None:intergenic 50.0%
CTTCCACAAATTCAGCCCAC+AGG + chr5.1:14425912-14425931 None:intergenic 50.0%
CTTGAGACTCTCAACGACAC+CGG + chr5.1:14421619-14421638 None:intergenic 50.0%
CTTGTTGCAAATACAGCGGC+AGG - chr5.1:14425133-14425152 MS.gene68356:intron 50.0%
GAACTAACACCACCACCCAT+CGG + chr5.1:14421438-14421457 None:intergenic 50.0%
GAGAACTTACTAGAGGGCAG+AGG - chr5.1:14421984-14422003 MS.gene68356:intron 50.0%
GATTAGGGTTACATTGCGGG+GGG + chr5.1:14421238-14421257 None:intergenic 50.0%
GCTAAGGCCACCAGTTTCTA+AGG + chr5.1:14422735-14422754 None:intergenic 50.0%
GGATTAGGGTTACATTGCGG+GGG + chr5.1:14421239-14421258 None:intergenic 50.0%
GGGATTAGGGTTACATTGCG+GGG + chr5.1:14421240-14421259 None:intergenic 50.0%
GGGGATTAGGGTTACATTGC+GGG + chr5.1:14421241-14421260 None:intergenic 50.0%
GTCCTTTGTGTTGGACCTGT+GGG - chr5.1:14425894-14425913 MS.gene68356:CDS 50.0%
TACAGGACAAAGGACCTTGG+AGG - chr5.1:14426218-14426237 MS.gene68356:CDS 50.0%
TCAAGTGGCACCAAGAGAAC+AGG + chr5.1:14424957-14424976 None:intergenic 50.0%
TGCATCAACAACCTCTTGGG+TGG + chr5.1:14426252-14426271 None:intergenic 50.0%
TTGAGACTCTCAACGACACC+GGG + chr5.1:14421618-14421637 None:intergenic 50.0%
! CATTTGCTTATCTCTGGGGG+TGG - chr5.1:14424164-14424183 MS.gene68356:intron 50.0%
! CTGTGGGCTGAATTTGTGGA+AGG - chr5.1:14425910-14425929 MS.gene68356:CDS 50.0%
! GAGGTTGCCACAAAGTATCC+TGG - chr5.1:14423653-14423672 MS.gene68356:intron 50.0%
! GCCACCAGTTTCTAAGGACT+TGG + chr5.1:14422729-14422748 None:intergenic 50.0%
! GCGTGGAGATAAGGTGTTTG+AGG + chr5.1:14421158-14421177 None:intergenic 50.0%
! GTCAAATAACGGGGATGGGT+TGG - chr5.1:14425806-14425825 MS.gene68356:CDS 50.0%
! TTTGAACAAGGTGCTTCCGC+AGG - chr5.1:14426044-14426063 MS.gene68356:CDS 50.0%
! TTTGCTTATCTCTGGGGGTG+GGG - chr5.1:14424166-14424185 MS.gene68356:intron 50.0%
!! AAGGAGAAGTGCCACAGGAT+TGG + chr5.1:14426108-14426127 None:intergenic 50.0%
!! GAAGAAAGGAGAAGTGCCAC+AGG + chr5.1:14426113-14426132 None:intergenic 50.0%
ACCAAGAGAACAGGCGGGAA+GGG + chr5.1:14424948-14424967 None:intergenic 55.0%
AGCCCACAGGTCCAACACAA+AGG + chr5.1:14425899-14425918 None:intergenic 55.0%
AGGCAACAGCAGCTGTTGTG+GGG - chr5.1:14425549-14425568 MS.gene68356:intron 55.0%
AGTGGCACCAAGAGAACAGG+CGG + chr5.1:14424954-14424973 None:intergenic 55.0%
CAGCAGCTGTTGTGGGGTAA+TGG - chr5.1:14425555-14425574 MS.gene68356:intron 55.0%
CAGGGCCTTGGAAACAGTGA+TGG - chr5.1:14424679-14424698 MS.gene68356:intron 55.0%
GAGGCAACAGCAGCTGTTGT+GGG - chr5.1:14425548-14425567 MS.gene68356:intron 55.0%
GCATGTAGGTTACGGTACGG+GGG + chr5.1:14421197-14421216 None:intergenic 55.0%
GGAGTTGGGGTAGCAAATGC+TGG - chr5.1:14421878-14421897 MS.gene68356:intron 55.0%
GGCATGTAGGTTACGGTACG+GGG + chr5.1:14421198-14421217 None:intergenic 55.0%
GGGCAGTTGGTCCTTTGTGT+TGG - chr5.1:14425885-14425904 MS.gene68356:CDS 55.0%
GGGCATGTAGGTTACGGTAC+GGG + chr5.1:14421199-14421218 None:intergenic 55.0%
GGGGCATGTAGGTTACGGTA+CGG + chr5.1:14421200-14421219 None:intergenic 55.0%
GGTCCTTTGTGTTGGACCTG+TGG - chr5.1:14425893-14425912 MS.gene68356:CDS 55.0%
GGTGCTTCCGCAGGAAATGT+TGG - chr5.1:14426053-14426072 MS.gene68356:CDS 55.0%
TTACTAGAGGGCAGAGGCAG+AGG - chr5.1:14421990-14422009 MS.gene68356:intron 55.0%
! AATACAGCGGCAGGCATTGC+TGG - chr5.1:14425142-14425161 MS.gene68356:intron 55.0%
! GGACCTGTGGGCTGAATTTG+TGG - chr5.1:14425906-14425925 MS.gene68356:CDS 55.0%
! TTGCTTATCTCTGGGGGTGG+GGG - chr5.1:14424167-14424186 MS.gene68356:intron 55.0%
!! CGGCAGTGCTGTTTGTAGGA+TGG - chr5.1:14425839-14425858 MS.gene68356:CDS 55.0%
!! CGGTGTCGTTGAGAGTCTCA+AGG - chr5.1:14421617-14421636 MS.gene68356:intron 55.0%
ACCCTTCCCGCCTGTTCTCT+TGG - chr5.1:14424944-14424963 MS.gene68356:intron 60.0%
AGGGACAAGCACCACCCAAG+AGG - chr5.1:14426238-14426257 MS.gene68356:CDS 60.0%
CACCAAGAGAACAGGCGGGA+AGG + chr5.1:14424949-14424968 None:intergenic 60.0%
CTAATCCCCGGCGACGGAAT+CGG - chr5.1:14421252-14421271 MS.gene68356:CDS 60.0%
GATTCCGTCGCCGGGGATTA+GGG + chr5.1:14421253-14421272 None:intergenic 60.0%
GGAATCGGCCCTCTCGTAAC+CGG - chr5.1:14421267-14421286 MS.gene68356:CDS 60.0%
GGAGGCAACAGCAGCTGTTG+TGG - chr5.1:14425547-14425566 MS.gene68356:intron 60.0%
GTAACCCTAATCCCCGGCGA+CGG - chr5.1:14421246-14421265 MS.gene68356:CDS 60.0%
GTAGGTTACGGTACGGGGGT+GGG + chr5.1:14421193-14421212 None:intergenic 60.0%
GTGGCACCAAGAGAACAGGC+GGG + chr5.1:14424953-14424972 None:intergenic 60.0%
TGTAGGTTACGGTACGGGGG+TGG + chr5.1:14421194-14421213 None:intergenic 60.0%
!! AACGGGGATGGGTTGGAGTC+TGG - chr5.1:14425813-14425832 MS.gene68356:CDS 60.0%
!! AGGTGGATTGGCGACTCCGA+TGG - chr5.1:14421419-14421438 MS.gene68356:intron 60.0%
!! CAACAGCGCCGGTTACGAGA+GGG + chr5.1:14421278-14421297 None:intergenic 60.0%
!! GATGGGTTGGAGTCTGGTGG+CGG - chr5.1:14425819-14425838 MS.gene68356:CDS 60.0%
!! GGTGGATTGGCGACTCCGAT+GGG - chr5.1:14421420-14421439 MS.gene68356:intron 60.0%
!! GTGGCGGCAGTGCTGTTTGT+AGG - chr5.1:14425835-14425854 MS.gene68356:CDS 60.0%
!! TCAACAGCGCCGGTTACGAG+AGG + chr5.1:14421279-14421298 None:intergenic 60.0%
!! TGGAGGCACTGGTGTCATGC+CGG - chr5.1:14425162-14425181 MS.gene68356:intron 60.0%
ATTGCGGGGGGTTCCGTCTC+CGG + chr5.1:14421226-14421245 None:intergenic 65.0%
CGATTCCGTCGCCGGGGATT+AGG + chr5.1:14421254-14421273 None:intergenic 65.0%
GGGGCGGGGCATGTAGGTTA+CGG + chr5.1:14421205-14421224 None:intergenic 65.0%
GGGTGGTGCTTGTCCCTCCA+AGG + chr5.1:14426235-14426254 None:intergenic 65.0%
GTAACCTACATGCCCCGCCC+CGG - chr5.1:14421204-14421223 MS.gene68356:CDS 65.0%
TTACGGTACGGGGGTGGGTG+AGG + chr5.1:14421188-14421207 None:intergenic 65.0%
TTGGCGACTCCGATGGGTGG+TGG - chr5.1:14421426-14421445 MS.gene68356:intron 65.0%
! ACAGCGGCAGGCATTGCTGG+AGG - chr5.1:14425145-14425164 MS.gene68356:intron 65.0%
! GCAGGCATTGCTGGAGGCAC+TGG - chr5.1:14425151-14425170 MS.gene68356:intron 65.0%
! GGATTGGCGACTCCGATGGG+TGG - chr5.1:14421423-14421442 MS.gene68356:intron 65.0%
! GGTGGTGGCGCGTGGAGATA+AGG + chr5.1:14421167-14421186 None:intergenic 65.0%
!! GGAGGCACTGGTGTCATGCC+GGG - chr5.1:14425163-14425182 MS.gene68356:intron 65.0%
!! GGGGATGGGTTGGAGTCTGG+TGG - chr5.1:14425816-14425835 MS.gene68356:CDS 65.0%
TACATGCCCCGCCCCGGAGA+CGG - chr5.1:14421210-14421229 MS.gene68356:CDS 70.0%
TACGGGGGTGGGTGAGGTGG+TGG + chr5.1:14421182-14421201 None:intergenic 70.0%
TTGCGGGGGGTTCCGTCTCC+GGG + chr5.1:14421225-14421244 None:intergenic 70.0%
! AGAGGGCCGATTCCGTCGCC+GGG + chr5.1:14421261-14421280 None:intergenic 70.0%
! GAGAGGGCCGATTCCGTCGC+CGG + chr5.1:14421262-14421281 None:intergenic 70.0%
!! GGCACTGGTGTCATGCCGGG+AGG - chr5.1:14425166-14425185 MS.gene68356:intron 70.0%
CGGTACGGGGGTGGGTGAGG+TGG + chr5.1:14421185-14421204 None:intergenic 75.0%
GTCTCCGGGGCGGGGCATGT+AGG + chr5.1:14421211-14421230 None:intergenic 75.0%
TGCGGGGGGTTCCGTCTCCG+GGG + chr5.1:14421224-14421243 None:intergenic 75.0%
! GAGGGCCGATTCCGTCGCCG+GGG + chr5.1:14421260-14421279 None:intergenic 75.0%
! GTGGGTGAGGTGGTGGCGCG+TGG + chr5.1:14421175-14421194 None:intergenic 75.0%
! GGGGGGTTCCGTCTCCGGGG+CGG + chr5.1:14421221-14421240 None:intergenic 80.0%
! GGGGGTTCCGTCTCCGGGGC+GGG + chr5.1:14421220-14421239 None:intergenic 80.0%
! GGGGTTCCGTCTCCGGGGCG+GGG + chr5.1:14421219-14421238 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 14421129 14426292 14421129 ID=MS.gene68356
chr5.1 mRNA 14421129 14426292 14421129 ID=MS.gene68356.t1;Parent=MS.gene68356
chr5.1 exon 14425783 14426292 14425783 ID=MS.gene68356.t1.exon1;Parent=MS.gene68356.t1
chr5.1 CDS 14425783 14426292 14425783 ID=cds.MS.gene68356.t1;Parent=MS.gene68356.t1
chr5.1 exon 14423670 14423909 14423670 ID=MS.gene68356.t1.exon2;Parent=MS.gene68356.t1
chr5.1 CDS 14423670 14423909 14423670 ID=cds.MS.gene68356.t1;Parent=MS.gene68356.t1
chr5.1 exon 14422234 14422312 14422234 ID=MS.gene68356.t1.exon3;Parent=MS.gene68356.t1
chr5.1 CDS 14422234 14422312 14422234 ID=cds.MS.gene68356.t1;Parent=MS.gene68356.t1
chr5.1 exon 14421129 14421403 14421129 ID=MS.gene68356.t1.exon4;Parent=MS.gene68356.t1
chr5.1 CDS 14421129 14421403 14421129 ID=cds.MS.gene68356.t1;Parent=MS.gene68356.t1
Gene Sequence

>MS.gene68356

ATGGCGACGAGAAAATCCACAAACCTCCTCAAACACCTTATCTCCACGCGCCACCACCTCACCCACCCCCGTACCGTAACCTACATGCCCCGCCCCGGAGACGGAACCCCCCGCAATGTAACCCTAATCCCCGGCGACGGAATCGGCCCTCTCGTAACCGGCGCTGTTGAACAAGTAATGGAAGCGATGCATGCGCCAGTGCACTTCGAGAAATTCGAAGTGCACGGCAATATGAAAGCGATTCCATCTGAAGTGATGGAATCGATTAAGAAGAATAAGGTCTGTTTGAAAGGTGGATTGGCGACTCCGATGGGTGGTGGTGTTAGTTCGCTTAATTTGCAGCTGAGGAAGGAGCTTGATCTTTATGCTTCGCTTGTCAGTTGCTTTAATCTGGAAGGATTGACTACTAGGCATGATAATGTTGATATTGTTGTTATTAGGGAGAATACTGAAGGGGAATATGCTGGTCTTGAACATGAGGTTGTTCCCGGTGTCGTTGAGAGTCTCAAGGTATTCAAATTATGATCAATTTATTATACAAATATTACATTGTGTGTGTTTTGTTAGTAATTTTATTTATTAAGTTAATTAATTAATGGAAGATACATTTGATGATCAAACTTACTAGCGAAAGACATATTCAATGACCAAACTATCACATTTGAATATTAATTTTGTAATCTTGATACAATCAAGATGGTGGAAACTCAAGTTGACGGGATATGATTAGGAATGACAACATTAGAGAGGGAGTTGGGGTAGCAAATGCTGGAGAGAAGATGTGGAAATTCGACTTAGGCGGTTTGGGTGTGTAGAGAGAAGACCTGTTGATTCTTTGGTAAGGAGAGTGGATAAGAGAACTTACTAGAGGGCAGAGGCAGAGGAAGACCTAGAGAACCATAAGAGAAATTGTTAAGAAAGATCTAGAGATTAATGAGTTATAGTGACGATACATCACACATACGAGGACTAACATGATTTTTTATCCCTTATTAACTCACGACAATAAACTTACAATCAGAATAATTTAGAAACGTTACAGTTAAGTGATTTTTCGGTTGTATTTTTGTTAATTCAAACTTGTTGTAATCAGTAATTCACTTGTAGAAATTGTGATAACGTGTGGAGTTTGTTTCTATGAGTACTCACTCATTGGCTGGGCTTTGAAATTTGAATCATTTCATGGCTAGGTTTGCTGAATTGAGTAGTGACTAGTTTGTAAGCATTGTAATATTTGATCTATTCATCTCACAAGAAAAAACTTGGATTGCTGGCTTTTAGATGAATTGGAAAGCAGTGATGTATAATTTGCGTGTTTATGGTGAAGAATCTTGAAGAATTGCTTGTACCTTTTGCATGGTAGATAACTCGGAATATACTTTGTATTTAACAGGTCGTTAGACTTATTTTGCGTCACAAGTTGTTAGACATATTTTGCATCGGAAATTTGTGGGGAAATTCCCATCTACAAATTAATTAGGAGGTTTAATTTCTTCGGTGAAATGGATTCGGGTTGCAAGTTTAGGATTTTTTTGTTCTCGAAAGCGGTGATAGAGAATGCTATTTGGTAATATGCGGGTTTATTTTACTTATATTTCCAAGTCCTTAGAAACTGGTGGCCTTAGCTTCTCAGATGATAAACCCGTATTGCATTCACTGGTAATATTCGAATTTGAATATAATACATTCATTCTTACGGAAATTTCCAATCATCTTTGGGATACTTGATGGAAATGCTAACTAAAAGAAAAGTAGTGGTGCATAGTAGTTATACTCCCTCCGTCCTAAATTATAAGCAAAAAAAACTCATTTTCTTTGTCCCAAATTATAAGCAAAAAAGACCAACTTTTATCATATTTAATTATGTTATTTCAAAAAATTATCTTTTCCAAAGGAAAATTAAATGCAAAGTGCATTCAATTTGCTTTCTCTTTCATTTTCTCAATAACCAATAACCAATGGAAATTGTTTTTACATCTTCCTATAAAACTTATTTCAAGGATAACACAAGAAACTATGTTGCAAACTACTATGTTTTAGTTTTCTTAATAAATGTGATTTTTTTTTTGCTTATAATATGGGACAGAGGGAGTATTAATTAAGAATATTAGTTTTTAATTTTTTTATTTCTTTTGTATGCATTGTGTTGTGTACTTGCTGCTCCACTGTTGATGTCCTTTAAAGGTTGTTTATTGTAATCATGCTCAGATATTTCCCGTTTCTTAGAGGACTATTCTTTAAATGTAGAGGTTTTATTCCTTTATATTTGCTGTATAGATAGATTTGTATTGTAATATTTAAATGTTATATATCTCATGATGTTAGCACCTTGACATTGTGACATGTGGGTTTTTGTTTGCACCTCATACTCAAATTTTGCTAGGTAATAACAAAGTTCTGTTCAGAGCGCATTGCTAAATATGCTTTCGAGTATGCGTATCTAAATAACAGAAAGAAGGTGACTGCTGTGCACAAAGCAAACATTATGAAGCTTGCAGATGGTTTATTCTTGGAATCTTGTCGAGAGGTTGCCACAAAGTATCCTGGAATCAAGTATAATGAAATTATTGTAGACAATTGTTGCATGCAGCTTGTTTCAAAGCCTGAGCAATTTGATGTCATGGTATGTATATTTATAATTTGACCCTGAATCCCAATTATTTATCCACTTTTGGCTGATATGTTTATGAGTCCAGCACTTGTTTAAACATTTTTTTAAATAAAAAAATTTGGTGCTATTAGTTTGTTGGTTAAATAAGCAACTTTTTCAATTAAATTGTGACCCATGTGTCTGTTTATATTTCCTTTTATTACTTTGGAGAATTAGTGCCAACTGCCATGGGTTTCTCTGTTGTTTAATTTGTTGACTTCTGCCACAGAAATCACTGGATAAATGAGTAGCATTGTAATAAACTATAAACAATTATAGCCAAAGATAATTATTTGAGTCTTTACTTCTTTTGTATGAGATTTTCTATCGTTGGTTCAATCAAAAGGTTATTTTTGAAAGCAAATTAAACAGGAGTGGAGCTAGCCATTTGCTTATCTCTGGGGGTGGGGGCAATAACATAATGAAGGAAACTTTTTTGAGAGGATAACGAAGGAAACTTATTTCTCAAATAAACATATCAAACTTAATCAAAAATCAAAAGATTCTGTATATTTAATTCTTTTATATCATATGTAAATTAAATGAAATAAAAAAGAAATCATTCAATAGTGATTTTGAAAAGTTGAGTTGATAATTCTTTTATATCATCTGTTTTGTTTGTCTAGAAAAATTGAATTGCTTATGCTCTCTTTGTAGTTACTGTGGAGATTATAAGAATCAAAACAAGACAAATCAATCTAGCAATTAAGTTTTGTTTTACCTTTCTGTTTCTGCTAATTTGAGTAATTTCTGGTACAAATTGAGTGCTGCAAGTAATGTTTTAGTTATCAGATAAAGTCTTCTTTTTTGTTAGCCTTTGCTACCCAATAAGTATTCAACGAGCCACCCTGCACAAAAAGAAAATCTAGGAAGAAGGAATGAAACAGTATTTGTGTAGGACAGGGCCTTGGAAACAGTGATGGCATCATAATTTTTTTAACATAGGTTCCCTAGTTTAATCTAATTATATGAGAGGATATATGATAAATAAGTTATTAATTAACTTTTGTCATTTGAAAAGGTTGGATGTTGTATTTAATTAGGTTTTGATATGGCCATATTGTGCCAGTTCAACAGAAATAGATACTAGTTAGCTATCTCCTTTATCCCTCTGAGGAAGTATAACAAATGGATTTGTATTTGTAATAATGAATATAAAAGGGGTACCCTTCCCGCCTGTTCTCTTGGTGCCACTTGAAATTAAGAAAACATTGAGGAGTTTGTTGATTAACATGACGATTCTTTCTTGCTAGTAATTGATTGGTCTTTTTCCCAGTCATTTTGCTTTTGATTTTAAATTCAAAGTCATAAACACTATTTCTGCTTGCAGGTTACCCCCAATCTTTATGGAAATCTTGTTGCAAATACAGCGGCAGGCATTGCTGGAGGCACTGGTGTCATGCCGGGAGGTATAAATATTACTAATAACTATCGCTAATGTGTTGAAACTCTAGAGCTCTCATTTGATTATGCCGTGGCATTTTTCTTATCAAATAGTATCTTGCTTCCATATGGTCACTGTCGTTATGAGATGTGTGAGGGGGTGACTACCACTCAGAACTGTTGAGTCTAGATTTAGAGTGTATTAATCATGTTTGTCTAGTTCTTTCAATCAATTATTTCAGGAACATTTTTCATTCATTGAAAACTCTGCCAAAATATAGTGATTGATTAAATTAGAGATTGTATATTCAATGAAAACAAAAAATAGAGGTGGTATAGAAATCAAACTGGAAATTCATTTATCTTCCTCAACAGGTTGCAGTATGGAGGCAACAGCAGCTGTTGTGGGGTAATGGAGTTGTCAAATGGTAGTGACAACATAATTGGCATTTTACTCTTCTAAAGTGAACATTTCACTTTAGATGATAAAGTAAGAAATCTCAACCATTAATGAAAAATCAACCTTCAATATTTTAGCAGTGTATAGTAAGTAAACTATGAATGTGTTGAAATATCGACTATAAGTTTTCTCGTCAGTCGTTGAGGTCTTGTTGTACTCTAAAATAAGAGTTTGCTTTAGTTGAGTCAAATAACGGGGATGGGTTGGAGTCTGGTGGCGGCAGTGCTGTTTGTAGGATGGAGATTCTAATGAAAATATAGATAGGGCAGTTGGTCCTTTGTGTTGGACCTGTGGGCTGAATTTGTGGAAGGTTATCTAGATAGAAGTGATTGTTGAATAAAGCCACCTTAACCTTAAGCTTGAATATCTCGATTCATGGATGAAATGTCTTTGCAGGTAATGTTGGGGCTGACCATGCTGTATTTGAACAAGGTGCTTCCGCAGGAAATGTTGGTAAGGAAAAAGTAGTACAAGAAAAGAAAGCCAATCCTGTGGCACTTCTCCTTTCTTCCGCAATGATGCTCAGACATCTTCAGTTTCCTGTATTTGCTGAACGATTGGAAAGTGCTGTGAAACGAGTCATTTTAGAGGGTAAGTACAGGACAAAGGACCTTGGAGGGACAAGCACCACCCAAGAGGTTGTTGATGCAGTAATAGATGCATTGCAGTAA

Protein sequence

>MS.gene68356.t1

MATRKSTNLLKHLISTRHHLTHPRTVTYMPRPGDGTPRNVTLIPGDGIGPLVTGAVEQVMEAMHAPVHFEKFEVHGNMKAIPSEVMESIKKNKVCLKGGLATPMGGGVSSLNLQLRKELDLYASLVSCFNLEGLTTRHDNVDIVVIRENTEGEYAGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVATKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGKEKVVQEKKANPVALLLSSAMMLRHLQFPVFAERLESAVKRVILEGKYRTKDLGGTSTTQEVVDAVIDALQ