AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene054629


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054629.t1 MTR_3g101470 97.207 358 5 1 1 358 1 353 0.0 717
MS.gene054629.t1 MTR_1g064070 93.855 358 22 0 1 358 1 358 0.0 702
MS.gene054629.t1 MTR_8g074030 48.774 367 170 4 5 358 9 370 1.12e-118 348
MS.gene054629.t1 MTR_5g023740 47.268 366 179 4 2 358 6 366 1.01e-115 340
MS.gene054629.t1 MTR_8g074030 48.229 367 168 5 5 358 9 366 1.11e-114 338
MS.gene054629.t1 MTR_5g023740 46.721 366 177 5 2 358 6 362 2.10e-111 329
MS.gene054629.t1 MTR_5g023740 47.766 291 135 4 2 286 6 285 2.18e-93 280
MS.gene054629.t1 MTR_5g023740 49.091 275 129 3 2 270 6 275 5.21e-93 280
MS.gene054629.t1 MTR_5g023740 48.364 275 127 4 2 270 6 271 4.54e-89 269
MS.gene054629.t1 MTR_2g104610 31.105 344 207 10 23 341 36 374 6.25e-43 154
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054629.t1 AT5G03290 84.946 372 42 1 1 358 3 374 0.0 645
MS.gene054629.t1 AT3G09810 83.768 345 56 0 14 358 30 374 0.0 613
MS.gene054629.t1 AT4G35260 50.746 335 157 2 27 358 37 366 2.91e-116 342
MS.gene054629.t1 AT2G17130 47.550 347 166 4 18 358 30 366 8.26e-112 330
MS.gene054629.t1 AT4G35650 47.838 370 170 6 7 358 3 367 2.64e-111 329
MS.gene054629.t1 AT2G17130 46.974 347 164 5 18 358 30 362 8.11e-108 320
MS.gene054629.t1 AT1G32480 42.081 221 115 4 34 252 4 213 3.06e-56 183
MS.gene054629.t1 AT1G31180 30.636 346 210 10 23 341 35 377 2.22e-43 155
MS.gene054629.t1 AT1G31180 30.636 346 210 10 23 341 50 392 4.91e-43 154
MS.gene054629.t1 AT5G14200 31.138 334 204 9 31 341 50 380 1.09e-42 152
MS.gene054629.t1 AT5G14200 31.138 334 204 9 31 341 50 380 1.48e-42 153
MS.gene054629.t1 AT1G80560 30.383 339 200 9 31 341 46 376 9.38e-41 148
MS.gene054629.t1 AT5G14200 26.840 231 145 7 31 239 50 278 3.31e-13 69.7

Find 88 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAAGAAAGCTCTGTGTTCT+AGG 0.277010 3.4:-89382662 None:intergenic
CGACCTTGTTACAGCCTTCC+TGG 0.291185 3.4:+89382815 MS.gene054629:CDS
GCTGGCTTGATTGGAGGATT+AGG 0.316432 3.4:+89383516 MS.gene054629:CDS
AGTGACCTGTTTGACGGATT+CGG 0.336125 3.4:-89381345 None:intergenic
TGTTACCATGTTGCGCCATT+TGG 0.339580 3.4:+89383939 MS.gene054629:CDS
TAGAATCGGTAAGAAGAAAC+AGG 0.350254 3.4:+89382696 MS.gene054629:CDS
GACCTTTGTGCTGGCTTGAT+TGG 0.351034 3.4:+89383507 MS.gene054629:CDS
CTCACCTTCCCAGCAATATC+AGG 0.370076 3.4:-89383688 None:intergenic
GGCTCAGCACCTGATATTGC+TGG 0.370773 3.4:+89383679 MS.gene054629:CDS
TTGGTGATGCCTAACCTTTA+TGG 0.384596 3.4:+89383471 MS.gene054629:CDS
TAATGCTCTTCCCATTCAAT+TGG 0.399010 3.4:-89382620 None:intergenic
GGGCCAATGGCTACTCCTAT+TGG 0.403413 3.4:+89382731 MS.gene054629:CDS
GAATACTATCTGCTTTATCA+TGG 0.416549 3.4:-89383966 None:intergenic
GAACGATGCCCTTTGCCAAT+AGG 0.418274 3.4:-89382746 None:intergenic
GAACACAGAGCTTTCTTACA+TGG 0.419020 3.4:+89382666 MS.gene054629:CDS
CTTTGTGCTGGCTTGATTGG+AGG 0.426373 3.4:+89383510 MS.gene054629:CDS
CTGCTGAAGTTCCAATTGAA+TGG 0.426984 3.4:+89382609 MS.gene054629:CDS
CGCTGATTATATCACCATAA+AGG 0.430909 3.4:-89383485 None:intergenic
TTTGACGGATTCGGCGATCT+CGG 0.461264 3.4:-89381336 None:intergenic
ACTTCCTCATATACTATCTC+TGG 0.461486 3.4:-89383286 None:intergenic
GATCGCCGAATCCGTCAAAC+AGG 0.465664 3.4:+89381340 MS.gene054629:CDS
TGCTGAAGTTCCAATTGAAT+GGG 0.465872 3.4:+89382610 MS.gene054629:CDS
AGAAACAGGGTTGGCTTGAA+AGG 0.465983 3.4:+89382710 MS.gene054629:CDS
AAGAGAAGTGACCTGTTTGA+CGG 0.467875 3.4:-89381351 None:intergenic
TACATGGGAAAGTTTAGAAT+CGG 0.469643 3.4:+89382682 MS.gene054629:CDS
CAATTGGAACTTCAGCAGCT+TGG 0.477455 3.4:-89382604 None:intergenic
CCTCTCTCTTCCATGTGCCT+TGG 0.478415 3.4:-89383083 None:intergenic
CAGATACTTCGACGAACTCT+CGG 0.482540 3.4:+89381227 MS.gene054629:CDS
ATAATCAGCGACCTTTGTGC+TGG 0.491910 3.4:+89383498 MS.gene054629:CDS
TTGACGGATTCGGCGATCTC+GGG 0.494209 3.4:-89381335 None:intergenic
TCCCTTCTGCAATTGTGTTG+AGG 0.495446 3.4:-89383999 None:intergenic
ATATCCAGAGATAGTATATG+AGG 0.495498 3.4:+89383282 MS.gene054629:CDS
AAGTACCGAACTGCTGATCT+TGG 0.507542 3.4:+89384021 MS.gene054629:CDS
GAGGATTAGGCTTGACACCC+AGG 0.514136 3.4:+89383529 MS.gene054629:CDS
GGCACGAATCGGAGTGGTGG+AGG 0.523029 3.4:-89381285 None:intergenic
CTCGGGACCAATACCATCAC+CGG 0.527524 3.4:-89381318 None:intergenic
GGGAAAAGAGTGGCACGAAT+CGG 0.530220 3.4:-89381296 None:intergenic
GCACTTGCTGAGGCTGTACA+TGG 0.533721 3.4:+89383658 MS.gene054629:CDS
CTTTATCATGGAGATCCAAA+TGG 0.536914 3.4:-89383954 None:intergenic
GTGGAGGAAGAGAAGGACCT+AGG 0.536981 3.4:-89381269 None:intergenic
TTTCACTATGCCAAGGCACA+TGG 0.540596 3.4:+89383073 MS.gene054629:CDS
CGGAGTGGTGGAGGAAGAGA+AGG 0.541340 3.4:-89381276 None:intergenic
TAAGAAAGCTCTGTGTTCTA+GGG 0.543527 3.4:-89382661 None:intergenic
TGGCTACTCCTATTGGCAAA+GGG 0.544231 3.4:+89382738 MS.gene054629:CDS
TACCGAACTGCTGATCTTGG+TGG 0.549369 3.4:+89384024 MS.gene054629:CDS
GAAACAGGGTTGGCTTGAAA+GGG 0.549689 3.4:+89382711 MS.gene054629:CDS
TTCTGCAATTGTGTTGAGGA+TGG 0.552934 3.4:-89383995 None:intergenic
AGCTGCAACATTGGCGAGGG+AGG 0.553258 3.4:+89383631 MS.gene054629:intron
AGCACCTGATATTGCTGGGA+AGG 0.553390 3.4:+89383684 MS.gene054629:CDS
TGCCACCAAGATCAGCAGTT+CGG 0.556271 3.4:-89384026 None:intergenic
GTACAGTGGACTTGAACATC+AGG 0.556840 3.4:+89382898 MS.gene054629:CDS
CATTGACAATTGCTGCATGA+TGG 0.561036 3.4:+89383312 MS.gene054629:CDS
ATGGCTACTCCTATTGGCAA+AGG 0.563155 3.4:+89382737 MS.gene054629:CDS
ATTATATCACCATAAAGGTT+AGG 0.563728 3.4:-89383480 None:intergenic
TTTGGGTTATAGGTTGTGAG+GGG 0.565156 3.4:+89382989 MS.gene054629:intron
TCCAGCTGCAACATTGGCGA+GGG 0.568702 3.4:+89383628 MS.gene054629:intron
AACACAGAGCTTTCTTACAT+GGG 0.574926 3.4:+89382667 MS.gene054629:CDS
GAACTCAACAGCAAAGCAGT+TGG 0.576627 3.4:-89383916 None:intergenic
ATCCTCAACACAATTGCAGA+AGG 0.580671 3.4:+89383997 MS.gene054629:CDS
GCTCAGCACCTGATATTGCT+GGG 0.581328 3.4:+89383680 MS.gene054629:CDS
TCGGTAAGAAGAAACAGGGT+TGG 0.583355 3.4:+89382701 MS.gene054629:CDS
ACCTAGGGTTTGACAGATAG+CGG 0.587539 3.4:-89381253 None:intergenic
AGTGGCACGAATCGGAGTGG+TGG 0.588339 3.4:-89381288 None:intergenic
TTCCAGCTGCAACATTGGCG+AGG 0.595214 3.4:+89383627 MS.gene054629:intron
TTGCCAATAGGAGTAGCCAT+TGG 0.595229 3.4:-89382734 None:intergenic
GGTTGGCTTGAAAGGGCCAA+TGG 0.602286 3.4:+89382718 MS.gene054629:CDS
GGGAGGTATTGCACTTGCTG+AGG 0.604265 3.4:+89383648 MS.gene054629:CDS
GCCGCTATCTGTCAAACCCT+AGG 0.605814 3.4:+89381252 MS.gene054629:CDS
CTGTGTTCTAGGGTCAATTG+TGG 0.611038 3.4:-89382651 None:intergenic
TCGGGACCAATACCATCACC+GGG 0.615254 3.4:-89381317 None:intergenic
TGGAGGAAGAGAAGGACCTA+GGG 0.615545 3.4:-89381268 None:intergenic
CCAAGGCACATGGAAGAGAG+AGG 0.619352 3.4:+89383083 MS.gene054629:CDS
GAGATCCAAATGGCGCAACA+TGG 0.630253 3.4:-89383944 None:intergenic
AACATTATGCAAAAGACTGA+CGG 0.632176 3.4:+89383127 MS.gene054629:CDS
AATGGGAAGAGCATTACGTA+GGG 0.633880 3.4:+89382627 MS.gene054629:CDS
CAAGGCACATGGAAGAGAGA+GGG 0.638399 3.4:+89383084 MS.gene054629:CDS
CAGGAAGGCTGTAACAAGGT+CGG 0.645409 3.4:-89382814 None:intergenic
TAGCCAGGAAGGCTGTAACA+AGG 0.645729 3.4:-89382818 None:intergenic
AATACAGAAGGCGAGTACAG+TGG 0.649635 3.4:+89382884 MS.gene054629:CDS
ACAATCCGTGAAAATACAGA+AGG 0.651487 3.4:+89382872 MS.gene054629:CDS
GAATGGGAAGAGCATTACGT+AGG 0.653825 3.4:+89382626 MS.gene054629:CDS
ACCATCACCGGGGAAAAGAG+TGG 0.655812 3.4:-89381306 None:intergenic
ACGTCAAGCAAGTTTACGAG+TGG 0.657438 3.4:+89383039 MS.gene054629:CDS
TCCTCAACACAATTGCAGAA+GGG 0.663199 3.4:+89383998 MS.gene054629:CDS
AGAATCGGTAAGAAGAAACA+GGG 0.666965 3.4:+89382697 MS.gene054629:CDS
AAGAGTGGCACGAATCGGAG+TGG 0.687099 3.4:-89381291 None:intergenic
CTCCAATCAAGCCAGCACAA+AGG 0.693100 3.4:-89383509 None:intergenic
CGGGACCAATACCATCACCG+GGG 0.794777 3.4:-89381316 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTATAAAATTAAATTT+GGG - chr3.4:89381483-89381502 None:intergenic 0.0%
!! TATAATTATAAAATTAAATT+TGG - chr3.4:89381484-89381503 None:intergenic 0.0%
!!! TTAATTTATTTAGCATTTTT+GGG + chr3.4:89382972-89382991 MS.gene054629:intron 10.0%
!!! TTTAATTTATTTAGCATTTT+TGG + chr3.4:89382971-89382990 MS.gene054629:intron 10.0%
!!! TTTGTTTTGTTTTAAATTTT+GGG + chr3.4:89383555-89383574 MS.gene054629:intron 10.0%
!!! TTTTGTTTTGTTTTAAATTT+TGG + chr3.4:89383554-89383573 MS.gene054629:intron 10.0%
!! AACAAGTGAAATTTAATTAA+AGG - chr3.4:89383865-89383884 None:intergenic 15.0%
!!! TTTTTTAAACTGATACAAAT+GGG + chr3.4:89381603-89381622 MS.gene054629:intron 15.0%
!!! TTTTTTTAAACTGATACAAA+TGG + chr3.4:89381602-89381621 MS.gene054629:intron 15.0%
!! AAATTAAATTGATCAGAACT+TGG - chr3.4:89382959-89382978 None:intergenic 20.0%
!! AATAAGAAGTGAGAAAAATA+AGG - chr3.4:89381712-89381731 None:intergenic 20.0%
!! TAAAACAAAACAAAAAACCT+GGG - chr3.4:89383549-89383568 None:intergenic 20.0%
!! TAAATTTGGGAAAACATATT+CGG - chr3.4:89381470-89381489 None:intergenic 20.0%
!! TTAAAACAAAACAAAAAACC+TGG - chr3.4:89383550-89383569 None:intergenic 20.0%
!!! ACAAGCATAAAGTTTTAAAA+CGG - chr3.4:89383744-89383763 None:intergenic 20.0%
!!! GTTTTAAAACGGATAATATA+TGG - chr3.4:89383733-89383752 None:intergenic 20.0%
!!! TTATTTTTCTCACTTCTTAT+TGG + chr3.4:89381711-89381730 MS.gene054629:intron 20.0%
!!! TTTTTACTATTGCTACAATT+AGG + chr3.4:89382577-89382596 MS.gene054629:intron 20.0%
! AAAATGAACCAATATACTGA+TGG - chr3.4:89382372-89382391 None:intergenic 25.0%
! AAATAAGATAACAGCAAACA+AGG - chr3.4:89381527-89381546 None:intergenic 25.0%
! AAATGAACCAATATACTGAT+GGG - chr3.4:89382371-89382390 None:intergenic 25.0%
! AACTTGAGCTTATAAAGAAT+TGG + chr3.4:89381640-89381659 MS.gene054629:intron 25.0%
! ATTATATCACCATAAAGGTT+AGG - chr3.4:89383483-89383502 None:intergenic 25.0%
! ATTTAAGGAGTAAATATCCA+GGG - chr3.4:89382291-89382310 None:intergenic 25.0%
! CAACAAAATTGTCAATCAAA+TGG - chr3.4:89381685-89381704 None:intergenic 25.0%
! CTAAGAGATTAAAGGATTTA+AGG - chr3.4:89382306-89382325 None:intergenic 25.0%
! GTCATTATTACTAGTATTCA+AGG - chr3.4:89383216-89383235 None:intergenic 25.0%
! TATAAGCTCAAGTTCAAATT+AGG - chr3.4:89381634-89381653 None:intergenic 25.0%
! TTCTTATTGGTCAAAAACAA+TGG + chr3.4:89381724-89381743 MS.gene054629:intron 25.0%
!! TAAGTTCTTTTCTTAGAGTA+AGG - chr3.4:89382778-89382797 None:intergenic 25.0%
!!! AAACTTTATGCTTGTTTTCA+TGG + chr3.4:89383749-89383768 MS.gene054629:intron 25.0%
!!! ATTGAGACAGAGTATTTTAT+AGG - chr3.4:89383187-89383206 None:intergenic 25.0%
!!! ATTTAGCATTTTTGGGTTAT+AGG + chr3.4:89382979-89382998 MS.gene054629:intron 25.0%
!!! TGCTTTGTTTGTTTCTTATT+GGG + chr3.4:89382494-89382513 MS.gene054629:intron 25.0%
!!! TTGCTTTGTTTGTTTCTTAT+TGG + chr3.4:89382493-89382512 MS.gene054629:intron 25.0%
AAAACAATGGAGAGAGAAAA+AGG + chr3.4:89381737-89381756 MS.gene054629:intron 30.0%
AACATTATGCAAAAGACTGA+CGG + chr3.4:89383127-89383146 MS.gene054629:CDS 30.0%
AAGTTTCTTAGTTCATCTGA+AGG - chr3.4:89383815-89383834 None:intergenic 30.0%
AATACTATAGTTTATGTGCG+AGG + chr3.4:89382156-89382175 MS.gene054629:intron 30.0%
ATATCCAGAGATAGTATATG+AGG + chr3.4:89383282-89383301 MS.gene054629:CDS 30.0%
GAATACTATCTGCTTTATCA+TGG - chr3.4:89383969-89383988 None:intergenic 30.0%
GATTTAAGGAGTAAATATCC+AGG - chr3.4:89382292-89382311 None:intergenic 30.0%
GTACAAAAGTTGTCAAAAAG+TGG + chr3.4:89381804-89381823 MS.gene054629:intron 30.0%
TCTTTCTTTGTCAATTGTCA+TGG + chr3.4:89382397-89382416 MS.gene054629:intron 30.0%
! TACATGGGAAAGTTTAGAAT+CGG + chr3.4:89382682-89382701 MS.gene054629:CDS 30.0%
! TTGCAATTGACTTAAACCTT+TGG + chr3.4:89381553-89381572 MS.gene054629:intron 30.0%
!! AAATTTCACTTGTTTTCCTG+TGG + chr3.4:89383871-89383890 MS.gene054629:intron 30.0%
!! TTAACTTGATGAGTTGATGT+AGG + chr3.4:89383344-89383363 MS.gene054629:intron 30.0%
AACACAGAGCTTTCTTACAT+GGG + chr3.4:89382667-89382686 MS.gene054629:CDS 35.0%
AAGTTAGGTCTGTTTGGTTA+TGG + chr3.4:89381926-89381945 MS.gene054629:intron 35.0%
ACAATCCGTGAAAATACAGA+AGG + chr3.4:89382872-89382891 MS.gene054629:CDS 35.0%
ACTTCCTCATATACTATCTC+TGG - chr3.4:89383289-89383308 None:intergenic 35.0%
AGAATCGGTAAGAAGAAACA+GGG + chr3.4:89382697-89382716 MS.gene054629:CDS 35.0%
ATGGTTCAAAATACAGCATC+TGG + chr3.4:89381878-89381897 MS.gene054629:intron 35.0%
CAAACAAAGCAAGAGATAGA+AGG - chr3.4:89382485-89382504 None:intergenic 35.0%
CAAATTCTGCATAAAACCAC+AGG - chr3.4:89383890-89383909 None:intergenic 35.0%
CCAACGAAAGAAAACAGAAT+GGG - chr3.4:89382345-89382364 None:intergenic 35.0%
CTTTATCATGGAGATCCAAA+TGG - chr3.4:89383957-89383976 None:intergenic 35.0%
TAAGAAAGCTCTGTGTTCTA+GGG - chr3.4:89382664-89382683 None:intergenic 35.0%
TAATGCTCTTCCCATTCAAT+TGG - chr3.4:89382623-89382642 None:intergenic 35.0%
TAGAATCGGTAAGAAGAAAC+AGG + chr3.4:89382696-89382715 MS.gene054629:CDS 35.0%
TGCTGAAGTTCCAATTGAAT+GGG + chr3.4:89382610-89382629 MS.gene054629:CDS 35.0%
TGGTTGTGCTAAGAGATTAA+AGG - chr3.4:89382314-89382333 None:intergenic 35.0%
TTTGTCAATTGTCATGGATG+TGG + chr3.4:89382403-89382422 MS.gene054629:intron 35.0%
! ACCAATACATCAAAAAGTGC+AGG - chr3.4:89383456-89383475 None:intergenic 35.0%
! CCATTCTGTTTTCTTTCGTT+GGG + chr3.4:89382343-89382362 MS.gene054629:intron 35.0%
! CGCTGATTATATCACCATAA+AGG - chr3.4:89383488-89383507 None:intergenic 35.0%
! GTCAGTCTTTTGCATAATGT+TGG - chr3.4:89383128-89383147 None:intergenic 35.0%
! TTAGTATTTTCTCCATTGCC+AGG + chr3.4:89382258-89382277 MS.gene054629:intron 35.0%
!! AGATGCTGTATTTTGAACCA+TGG - chr3.4:89381879-89381898 None:intergenic 35.0%
!! GATATTTTTCAGCAACCTCA+CGG - chr3.4:89383267-89383286 None:intergenic 35.0%
!! TCCTGCACTTTTTGATGTAT+TGG + chr3.4:89383452-89383471 MS.gene054629:CDS 35.0%
!!! CTGTGGTTTTATGCAGAATT+TGG + chr3.4:89383888-89383907 MS.gene054629:intron 35.0%
!!! GACACTAGTTTTATCTCCAA+AGG - chr3.4:89381572-89381591 None:intergenic 35.0%
!!! TTATTTTTAGTGTTGCCGTG+AGG + chr3.4:89383249-89383268 MS.gene054629:intron 35.0%
!!! TTTTGGGTTATAGGTTGTGA+GGG + chr3.4:89382988-89383007 MS.gene054629:intron 35.0%
!!! TTTTTGGGTTATAGGTTGTG+AGG + chr3.4:89382987-89383006 MS.gene054629:intron 35.0%
AAGAGAAGTGACCTGTTTGA+CGG - chr3.4:89381354-89381373 None:intergenic 40.0%
AATACAGCATCTGGTGATAG+TGG + chr3.4:89381887-89381906 MS.gene054629:intron 40.0%
AATATCCAGGGTTTGAATCC+TGG - chr3.4:89382279-89382298 None:intergenic 40.0%
AATCCTAGGGTATGTTTGGA+TGG - chr3.4:89382119-89382138 None:intergenic 40.0%
ACGAGTAAGTTAGGTCTGTT+TGG + chr3.4:89381920-89381939 MS.gene054629:intron 40.0%
AGAGAGAAAAAGGATGAGAG+AGG + chr3.4:89381747-89381766 MS.gene054629:intron 40.0%
ATCCTCAACACAATTGCAGA+AGG + chr3.4:89383997-89384016 MS.gene054629:CDS 40.0%
ATGGAGGAGAGGATTTAGAA+GGG + chr3.4:89381945-89381964 MS.gene054629:intron 40.0%
CAGGTCACTTCTCTTTCAAT+TGG + chr3.4:89381359-89381378 MS.gene054629:intron 40.0%
CATTGACAATTGCTGCATGA+TGG + chr3.4:89383312-89383331 MS.gene054629:CDS 40.0%
CCCAACGAAAGAAAACAGAA+TGG - chr3.4:89382346-89382365 None:intergenic 40.0%
CTGCTGAAGTTCCAATTGAA+TGG + chr3.4:89382609-89382628 MS.gene054629:CDS 40.0%
GAACACAGAGCTTTCTTACA+TGG + chr3.4:89382666-89382685 MS.gene054629:CDS 40.0%
GTAAGAAAGCTCTGTGTTCT+AGG - chr3.4:89382665-89382684 None:intergenic 40.0%
TATGGAGGAGAGGATTTAGA+AGG + chr3.4:89381944-89381963 MS.gene054629:intron 40.0%
TCCTCAACACAATTGCAGAA+GGG + chr3.4:89383998-89384017 MS.gene054629:CDS 40.0%
TTAGGTCTGTTTGGTTATGG+AGG + chr3.4:89381929-89381948 MS.gene054629:intron 40.0%
TTCTGCAATTGTGTTGAGGA+TGG - chr3.4:89383998-89384017 None:intergenic 40.0%
TTGCTGCATGATGGTAATCT+TGG + chr3.4:89383321-89383340 MS.gene054629:intron 40.0%
TTGGGTTCCCATCAGTATAT+TGG + chr3.4:89382361-89382380 MS.gene054629:intron 40.0%
! ACTCGCCTTCTGTATTTTCA+CGG - chr3.4:89382880-89382899 None:intergenic 40.0%
! ATCTTTTCCAGCTGCAACAT+TGG + chr3.4:89383622-89383641 MS.gene054629:intron 40.0%
! CCCATTCTGTTTTCTTTCGT+TGG + chr3.4:89382342-89382361 MS.gene054629:intron 40.0%
! GTATGCTTTTCACTATGCCA+AGG + chr3.4:89383066-89383085 MS.gene054629:CDS 40.0%
! GTTTTCTTCGAAACCAGTCA+TGG + chr3.4:89381396-89381415 MS.gene054629:intron 40.0%
! TTTGGGTTATAGGTTGTGAG+GGG + chr3.4:89382989-89383008 MS.gene054629:intron 40.0%
!! AATGGGAAGAGCATTACGTA+GGG + chr3.4:89382627-89382646 MS.gene054629:CDS 40.0%
!! TCATATCGAGTTTTGTAGCC+AGG - chr3.4:89382836-89382855 None:intergenic 40.0%
!! TTGGTGATGCCTAACCTTTA+TGG + chr3.4:89383471-89383490 MS.gene054629:CDS 40.0%
AAACAGAATGGGAGCTCACT+TGG - chr3.4:89382334-89382353 None:intergenic 45.0%
AAGGTTGTCCTTGATGCAAG+TGG - chr3.4:89383796-89383815 None:intergenic 45.0%
AATACAGAAGGCGAGTACAG+TGG + chr3.4:89382884-89382903 MS.gene054629:CDS 45.0%
ACCCAATAGCAGCAATCCTA+GGG - chr3.4:89382132-89382151 None:intergenic 45.0%
ACCCTAGGATTGCTGCTATT+GGG + chr3.4:89382128-89382147 MS.gene054629:intron 45.0%
ACCTAGGGTTTGACAGATAG+CGG - chr3.4:89381256-89381275 None:intergenic 45.0%
ACGTCAAGCAAGTTTACGAG+TGG + chr3.4:89383039-89383058 MS.gene054629:CDS 45.0%
ATAATCAGCGACCTTTGTGC+TGG + chr3.4:89383498-89383517 MS.gene054629:CDS 45.0%
ATGGCTACTCCTATTGGCAA+AGG + chr3.4:89382737-89382756 MS.gene054629:CDS 45.0%
CAATTGGAACTTCAGCAGCT+TGG - chr3.4:89382607-89382626 None:intergenic 45.0%
CAGATACTTCGACGAACTCT+CGG + chr3.4:89381227-89381246 MS.gene054629:CDS 45.0%
CAGCAATCCTAGGGTATGTT+TGG - chr3.4:89382123-89382142 None:intergenic 45.0%
CCATGGATGATTGTAGTGAC+AGG - chr3.4:89381862-89381881 None:intergenic 45.0%
CCTGTCACTACAATCATCCA+TGG + chr3.4:89381859-89381878 MS.gene054629:intron 45.0%
CTAGGGTATGTTTGGATGGA+GGG - chr3.4:89382115-89382134 None:intergenic 45.0%
GAACTCAACAGCAAAGCAGT+TGG - chr3.4:89383919-89383938 None:intergenic 45.0%
GAATGTGTTAGCGAACCTTC+AGG - chr3.4:89383159-89383178 None:intergenic 45.0%
GATTCTTCACAAGCTGTGGA+TGG - chr3.4:89383434-89383453 None:intergenic 45.0%
GTGTGTGGAACGAGTAAGTT+AGG + chr3.4:89381911-89381930 MS.gene054629:intron 45.0%
TACCCTAGGATTGCTGCTAT+TGG + chr3.4:89382127-89382146 MS.gene054629:intron 45.0%
TAGGGTATGTTTGGATGGAG+GGG - chr3.4:89382114-89382133 None:intergenic 45.0%
TCCCTTCTGCAATTGTGTTG+AGG - chr3.4:89384002-89384021 None:intergenic 45.0%
TCGGTAAGAAGAAACAGGGT+TGG + chr3.4:89382701-89382720 MS.gene054629:CDS 45.0%
TCTGTTTGGTTATGGAGGAG+AGG + chr3.4:89381934-89381953 MS.gene054629:intron 45.0%
TGGCTACTCCTATTGGCAAA+GGG + chr3.4:89382738-89382757 MS.gene054629:CDS 45.0%
TGTTACCATGTTGCGCCATT+TGG + chr3.4:89383939-89383958 MS.gene054629:CDS 45.0%
TTGCCAATAGGAGTAGCCAT+TGG - chr3.4:89382737-89382756 None:intergenic 45.0%
TTTCACTATGCCAAGGCACA+TGG + chr3.4:89383073-89383092 MS.gene054629:CDS 45.0%
TTTGTGCACCACTTGCATCA+AGG + chr3.4:89383785-89383804 MS.gene054629:intron 45.0%
! GTACAGTGGACTTGAACATC+AGG + chr3.4:89382898-89382917 MS.gene054629:CDS 45.0%
!! AAGTACCGAACTGCTGATCT+TGG + chr3.4:89384021-89384040 MS.gene054629:CDS 45.0%
!! AGAAACAGGGTTGGCTTGAA+AGG + chr3.4:89382710-89382729 MS.gene054629:CDS 45.0%
!! AGTGACCTGTTTGACGGATT+CGG - chr3.4:89381348-89381367 None:intergenic 45.0%
!! ATCGAGTTTTGTAGCCAGGA+AGG - chr3.4:89382832-89382851 None:intergenic 45.0%
!! CTGTGTTCTAGGGTCAATTG+TGG - chr3.4:89382654-89382673 None:intergenic 45.0%
!! GAAACAGGGTTGGCTTGAAA+GGG + chr3.4:89382711-89382730 MS.gene054629:CDS 45.0%
!! GAATGGGAAGAGCATTACGT+AGG + chr3.4:89382626-89382645 MS.gene054629:CDS 45.0%
AGCACCTGATATTGCTGGGA+AGG + chr3.4:89383684-89383703 MS.gene054629:CDS 50.0%
CAAGGCACATGGAAGAGAGA+GGG + chr3.4:89383084-89383103 MS.gene054629:CDS 50.0%
CACCCAATAGCAGCAATCCT+AGG - chr3.4:89382133-89382152 None:intergenic 50.0%
CAGGAAGGCTGTAACAAGGT+CGG - chr3.4:89382817-89382836 None:intergenic 50.0%
CAGGGTTTGAATCCTGGCAA+TGG - chr3.4:89382273-89382292 None:intergenic 50.0%
CATTGCCAGGATTCAAACCC+TGG + chr3.4:89382271-89382290 MS.gene054629:intron 50.0%
CCTAGGGTATGTTTGGATGG+AGG - chr3.4:89382116-89382135 None:intergenic 50.0%
CCTCCATCCAAACATACCCT+AGG + chr3.4:89382113-89382132 MS.gene054629:intron 50.0%
CTCACCTTCCCAGCAATATC+AGG - chr3.4:89383691-89383710 None:intergenic 50.0%
CTCCAATCAAGCCAGCACAA+AGG - chr3.4:89383512-89383531 None:intergenic 50.0%
CTTCGAAACCAGTCATGGCA+TGG + chr3.4:89381401-89381420 MS.gene054629:intron 50.0%
GAACGATGCCCTTTGCCAAT+AGG - chr3.4:89382749-89382768 None:intergenic 50.0%
GAGATCCAAATGGCGCAACA+TGG - chr3.4:89383947-89383966 None:intergenic 50.0%
GCAGGATTCTTCACAAGCTG+TGG - chr3.4:89383438-89383457 None:intergenic 50.0%
GCTCAGCACCTGATATTGCT+GGG + chr3.4:89383680-89383699 MS.gene054629:CDS 50.0%
GGGAAAAGAGTGGCACGAAT+CGG - chr3.4:89381299-89381318 None:intergenic 50.0%
GTATGTTTGGATGGAGGGGA+GGG - chr3.4:89382110-89382129 None:intergenic 50.0%
TACCGAACTGCTGATCTTGG+TGG + chr3.4:89384024-89384043 MS.gene054629:CDS 50.0%
TAGCCAGGAAGGCTGTAACA+AGG - chr3.4:89382821-89382840 None:intergenic 50.0%
TATGTTTGGATGGAGGGGAG+GGG - chr3.4:89382109-89382128 None:intergenic 50.0%
TGCCACCAAGATCAGCAGTT+CGG - chr3.4:89384029-89384048 None:intergenic 50.0%
TGGAGGAAGAGAAGGACCTA+GGG - chr3.4:89381271-89381290 None:intergenic 50.0%
! CTCTGCTCTGGGTTTGGTTA+CGG + chr3.4:89382181-89382200 MS.gene054629:intron 50.0%
! GACTGACGGTCTTTTCCTGA+AGG + chr3.4:89383141-89383160 MS.gene054629:CDS 50.0%
! GTCTGTTTTGCTGCTGAGAG+TGG + chr3.4:89382427-89382446 MS.gene054629:intron 50.0%
! TCTGCTCTGGGTTTGGTTAC+GGG + chr3.4:89382182-89382201 MS.gene054629:intron 50.0%
!! ATTCGTGCCACTCTTTTCCC+CGG + chr3.4:89381299-89381318 MS.gene054629:CDS 50.0%
!! CTTTGTGCTGGCTTGATTGG+AGG + chr3.4:89383510-89383529 MS.gene054629:CDS 50.0%
!! CTTTTCCCCGGTGATGGTAT+TGG + chr3.4:89381311-89381330 MS.gene054629:CDS 50.0%
!! GACCTTTGTGCTGGCTTGAT+TGG + chr3.4:89383507-89383526 MS.gene054629:CDS 50.0%
!! GCTGGCTTGATTGGAGGATT+AGG + chr3.4:89383516-89383535 MS.gene054629:CDS 50.0%
!! TCTGGTGATAGTGGTGTGTG+TGG + chr3.4:89381896-89381915 MS.gene054629:intron 50.0%
!! TTTGACGGATTCGGCGATCT+CGG - chr3.4:89381339-89381358 None:intergenic 50.0%
AAGAGTGGCACGAATCGGAG+TGG - chr3.4:89381294-89381313 None:intergenic 55.0%
ACCATCACCGGGGAAAAGAG+TGG - chr3.4:89381309-89381328 None:intergenic 55.0%
ATGTTTGGATGGAGGGGAGG+GGG - chr3.4:89382108-89382127 None:intergenic 55.0%
ATTGCTGGGAAGGTGAGCTG+TGG + chr3.4:89383694-89383713 MS.gene054629:intron 55.0%
CCAAGGCACATGGAAGAGAG+AGG + chr3.4:89383083-89383102 MS.gene054629:CDS 55.0%
CCTCTCTCTTCCATGTGCCT+TGG - chr3.4:89383086-89383105 None:intergenic 55.0%
CGACCTTGTTACAGCCTTCC+TGG + chr3.4:89382815-89382834 MS.gene054629:CDS 55.0%
CTCGGGACCAATACCATCAC+CGG - chr3.4:89381321-89381340 None:intergenic 55.0%
GACACATGCCATGCCATGAC+TGG - chr3.4:89381412-89381431 None:intergenic 55.0%
GAGGATTAGGCTTGACACCC+AGG + chr3.4:89383529-89383548 MS.gene054629:CDS 55.0%
GATCGCCGAATCCGTCAAAC+AGG + chr3.4:89381340-89381359 MS.gene054629:CDS 55.0%
GCCGCTATCTGTCAAACCCT+AGG + chr3.4:89381252-89381271 MS.gene054629:CDS 55.0%
GGCTCAGCACCTGATATTGC+TGG + chr3.4:89383679-89383698 MS.gene054629:CDS 55.0%
GGGCCAATGGCTACTCCTAT+TGG + chr3.4:89382731-89382750 MS.gene054629:CDS 55.0%
GGTATGTTTGGATGGAGGGG+AGG - chr3.4:89382111-89382130 None:intergenic 55.0%
GTGGAGGAAGAGAAGGACCT+AGG - chr3.4:89381272-89381291 None:intergenic 55.0%
TCCAGCTGCAACATTGGCGA+GGG + chr3.4:89383628-89383647 MS.gene054629:intron 55.0%
TCGGGACCAATACCATCACC+GGG - chr3.4:89381320-89381339 None:intergenic 55.0%
TTCCAGCTGCAACATTGGCG+AGG + chr3.4:89383627-89383646 MS.gene054629:intron 55.0%
! CTGCTCTGGGTTTGGTTACG+GGG + chr3.4:89382183-89382202 MS.gene054629:intron 55.0%
! GCACTTGCTGAGGCTGTACA+TGG + chr3.4:89383658-89383677 MS.gene054629:CDS 55.0%
! TGCTCTGGGTTTGGTTACGG+GGG + chr3.4:89382184-89382203 MS.gene054629:intron 55.0%
!! GGGAGGTATTGCACTTGCTG+AGG + chr3.4:89383648-89383667 MS.gene054629:CDS 55.0%
!! GGTTGGCTTGAAAGGGCCAA+TGG + chr3.4:89382718-89382737 MS.gene054629:CDS 55.0%
!! TTGACGGATTCGGCGATCTC+GGG - chr3.4:89381338-89381357 None:intergenic 55.0%
AGCTGCAACATTGGCGAGGG+AGG + chr3.4:89383631-89383650 MS.gene054629:intron 60.0%
AGTGGCACGAATCGGAGTGG+TGG - chr3.4:89381291-89381310 None:intergenic 60.0%
ATGTGCGAGGAGCTCTGCTC+TGG + chr3.4:89382169-89382188 MS.gene054629:intron 60.0%
CGGGACCAATACCATCACCG+GGG - chr3.4:89381319-89381338 None:intergenic 60.0%
TCCCTCGCCAATGTTGCAGC+TGG - chr3.4:89383632-89383651 None:intergenic 60.0%
TGTGCGAGGAGCTCTGCTCT+GGG + chr3.4:89382170-89382189 MS.gene054629:intron 60.0%
! CGGAGTGGTGGAGGAAGAGA+AGG - chr3.4:89381279-89381298 None:intergenic 60.0%
! GAGGAGCTCTGCTCTGGGTT+TGG + chr3.4:89382175-89382194 MS.gene054629:intron 60.0%
! GCCACTCTTTTCCCCGGTGA+TGG + chr3.4:89381305-89381324 MS.gene054629:CDS 60.0%
! GCTCTGGGTTTGGTTACGGG+GGG + chr3.4:89382185-89382204 MS.gene054629:intron 60.0%
GGCACGAATCGGAGTGGTGG+AGG - chr3.4:89381288-89381307 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 89381218 89384095 89381218 ID=MS.gene054629
chr3.4 mRNA 89381218 89384095 89381218 ID=MS.gene054629.t1;Parent=MS.gene054629
chr3.4 exon 89381218 89381361 89381218 ID=MS.gene054629.t1.exon1;Parent=MS.gene054629.t1
chr3.4 CDS 89381218 89381361 89381218 ID=cds.MS.gene054629.t1;Parent=MS.gene054629.t1
chr3.4 exon 89382599 89382919 89382599 ID=MS.gene054629.t1.exon2;Parent=MS.gene054629.t1
chr3.4 CDS 89382599 89382919 89382599 ID=cds.MS.gene054629.t1;Parent=MS.gene054629.t1
chr3.4 exon 89383001 89383162 89383001 ID=MS.gene054629.t1.exon3;Parent=MS.gene054629.t1
chr3.4 CDS 89383001 89383162 89383001 ID=cds.MS.gene054629.t1;Parent=MS.gene054629.t1
chr3.4 exon 89383259 89383333 89383259 ID=MS.gene054629.t1.exon4;Parent=MS.gene054629.t1
chr3.4 CDS 89383259 89383333 89383259 ID=cds.MS.gene054629.t1;Parent=MS.gene054629.t1
chr3.4 exon 89383441 89383550 89383441 ID=MS.gene054629.t1.exon5;Parent=MS.gene054629.t1
chr3.4 CDS 89383441 89383550 89383441 ID=cds.MS.gene054629.t1;Parent=MS.gene054629.t1
chr3.4 exon 89383633 89383705 89383633 ID=MS.gene054629.t1.exon6;Parent=MS.gene054629.t1
chr3.4 CDS 89383633 89383705 89383633 ID=cds.MS.gene054629.t1;Parent=MS.gene054629.t1
chr3.4 exon 89383904 89384095 89383904 ID=MS.gene054629.t1.exon7;Parent=MS.gene054629.t1
chr3.4 CDS 89383904 89384095 89383904 ID=cds.MS.gene054629.t1;Parent=MS.gene054629.t1
Gene Sequence

>MS.gene054629

ATGGCTTCTCAGATACTTCGACGAACTCTCGGAAGCCGCTATCTGTCAAACCCTAGGTCCTTCTCTTCCTCCACCACTCCGATTCGTGCCACTCTTTTCCCCGGTGATGGTATTGGTCCCGAGATCGCCGAATCCGTCAAACAGGTCACTTCTCTTTCAATTGGCTTCTTCTGTTGCTGTTTTCTTCGAAACCAGTCATGGCATGGCATGTGTCATTTTGTTTTTACTCTTCTTGTCGTAGAAAAACAGCCGAATATGTTTTCCCAAATTTAATTTTATAATTATAATTATATATATGATGATTTACCTTGTTTGCTGTTATCTTATTTTAATTGTTGCAATTGACTTAAACCTTTGGAGATAAAACTAGTGTCTTTTTTTTTTTTTTTTTAAACTGATACAAATGGGACGTGCCTAATTTGAACTTGAGCTTATAAAGAATTGGAGTAATGATATTTTGACATCCATTTGATTGACAATTTTGTTGACAACCTTATTTTTCTCACTTCTTATTGGTCAAAAACAATGGAGAGAGAAAAAGGATGAGAGAGGATATCAACATCATGTGAGTATGAGAGAGAAAGTTGTACAAAAGTTGTCAAAAAGTGGTTGTCAAGATATCATTTCTCAAAGAATTGAGACCTGTCACTACAATCATCCATGGTTCAAAATACAGCATCTGGTGATAGTGGTGTGTGTGGAACGAGTAAGTTAGGTCTGTTTGGTTATGGAGGAGAGGATTTAGAAGGGCTAACTCTATATTTTAAAATATATTTGATATTTAATTTTTTTTCTTTCAAAAAACAACATATTAATGATCATACAATACTTCAGTCACACATTTAAAAACACTGTATAGTGTCAATAATTTAAAAGAGAAATGTAAGCCCCCTCCCCTCCATCCAAACATACCCTAGGATTGCTGCTATTGGGTGCAAAATACTATAGTTTATGTGCGAGGAGCTCTGCTCTGGGTTTGGTTACGGGGGGTTCTTACTTTTTTTTTTTTAATGACAAATGTTAGTATGTGAGTTTTTATGTTAGTATTTTCTCCATTGCCAGGATTCAAACCCTGGATATTTACTCCTTAAATCCTTTAATCTCTTAGCACAACCAAGTGAGCTCCCATTCTGTTTTCTTTCGTTGGGTTCCCATCAGTATATTGGTTCATTTTACTTTTCTTTCTTTGTCAATTGTCATGGATGTGGAGTCTGTTTTGCTGCTGAGAGTGGTCACTTTCTAATGTTTGTGATACTTTATTCTTCCTTCTATCTCTTGCTTTGTTTGTTTCTTATTGGGAATTATATATACTCATAATAATTGATTTTCTTTTTTGAATCAAATGTAACTTGACGTCAATTTTTACTATTGCTACAATTAGGTATTCCAAGCTGCTGAAGTTCCAATTGAATGGGAAGAGCATTACGTAGGGACCACAATTGACCCTAGAACACAGAGCTTTCTTACATGGGAAAGTTTAGAATCGGTAAGAAGAAACAGGGTTGGCTTGAAAGGGCCAATGGCTACTCCTATTGGCAAAGGGCATCGTTCATTAAACCTTACTCTAAGAAAAGAACTTAATTTATATGCGAATGTCCGACCTTGTTACAGCCTTCCTGGCTACAAAACTCGATATGACAATGTAGATCTCATCACAATCCGTGAAAATACAGAAGGCGAGTACAGTGGACTTGAACATCAGGTAAATTTCACAATAATCAATATTGCATACTATCATCCAAGTTCTGATCAATTTAATTTATTTAGCATTTTTGGGTTATAGGTTGTGAGGGGTGTTGTAGAAAGTATCAAAATTATTACACGTCAAGCAAGTTTACGAGTGGCTGAGTATGCTTTTCACTATGCCAAGGCACATGGAAGAGAGAGGGTGTCTGCTATACACAAAGCCAACATTATGCAAAAGACTGACGGTCTTTTCCTGAAGGTTCGCTAACACATTCAAATGCCTATAAAATACTCTGTCTCAATTTTTATCCTTGAATACTAGTAATAATGACTGTCTATCTTGAATTATTTTTAGTGTTGCCGTGAGGTTGCTGAAAAATATCCAGAGATAGTATATGAGGAAGTTGTCATTGACAATTGCTGCATGATGGTAATCTTGGTTAACTTGATGAGTTGATGTAGGATATAACTGCATTTTTAAATTTTATTTTATCTATCTGAAAATGATACACTGTTTAATTTTTTTACCATCCACAGCTTGTGAAGAATCCTGCACTTTTTGATGTATTGGTGATGCCTAACCTTTATGGTGATATAATCAGCGACCTTTGTGCTGGCTTGATTGGAGGATTAGGCTTGACACCCAGGTTTTTTGTTTTGTTTTAAATTTTGGGAAAATAAATATAATAGTCGCACAATTATATTATCTGACAATATTATCTTTTCCAGCTGCAACATTGGCGAGGGAGGTATTGCACTTGCTGAGGCTGTACATGGCTCAGCACCTGATATTGCTGGGAAGGTGAGCTGTGGAATTACTTTTCAACCATATATTATCCGTTTTAAAACTTTATGCTTGTTTTCATGGAATTTATGTTTTTTTTGTGCACCACTTGCATCAAGGACAACCTTCAGATGAACTAAGAAACTTACAATTTTGATTTTTGAATTCGTAATACCTTTAATTAAATTTCACTTGTTTTCCTGTGGTTTTATGCAGAATTTGGCAAATCCAACTGCTTTGCTGTTGAGTTCTGTTACCATGTTGCGCCATTTGGATCTCCATGATAAAGCAGATAGTATTCAAAATGCCATCCTCAACACAATTGCAGAAGGGAAGTACCGAACTGCTGATCTTGGTGGCAGTTCAAAGACAACAGAATTTACAAAAGCAATTATTGATCATCTTTGA

Protein sequence

>MS.gene054629.t1

MASQILRRTLGSRYLSNPRSFSSSTTPIRATLFPGDGIGPEIAESVKQVFQAAEVPIEWEEHYVGTTIDPRTQSFLTWESLESVRRNRVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDNVDLITIRENTEGEYSGLEHQVVRGVVESIKIITRQASLRVAEYAFHYAKAHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIVYEEVVIDNCCMMLVKNPALFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLDLHDKADSIQNAILNTIAEGKYRTADLGGSSKTTEFTKAIIDHL