Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene054629.t1 | GAU44317.1 | 98 | 358 | 7 | 0 | 1 | 358 | 1 | 358 | 9.50E-199 | 702.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene054629.t1 | Q945K7 | 84.9 | 372 | 42 | 1 | 1 | 358 | 3 | 374 | 3.5e-178 | 625.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene054629.t1 | A0A2Z6PIA6 | 98.0 | 358 | 7 | 0 | 1 | 358 | 1 | 358 | 6.8e-199 | 702.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene054629.t1 | MTR_3g101470 | 97.207 | 358 | 5 | 1 | 1 | 358 | 1 | 353 | 0.0 | 717 |
MS.gene054629.t1 | MTR_1g064070 | 93.855 | 358 | 22 | 0 | 1 | 358 | 1 | 358 | 0.0 | 702 |
MS.gene054629.t1 | MTR_8g074030 | 48.774 | 367 | 170 | 4 | 5 | 358 | 9 | 370 | 1.12e-118 | 348 |
MS.gene054629.t1 | MTR_5g023740 | 47.268 | 366 | 179 | 4 | 2 | 358 | 6 | 366 | 1.01e-115 | 340 |
MS.gene054629.t1 | MTR_8g074030 | 48.229 | 367 | 168 | 5 | 5 | 358 | 9 | 366 | 1.11e-114 | 338 |
MS.gene054629.t1 | MTR_5g023740 | 46.721 | 366 | 177 | 5 | 2 | 358 | 6 | 362 | 2.10e-111 | 329 |
MS.gene054629.t1 | MTR_5g023740 | 47.766 | 291 | 135 | 4 | 2 | 286 | 6 | 285 | 2.18e-93 | 280 |
MS.gene054629.t1 | MTR_5g023740 | 49.091 | 275 | 129 | 3 | 2 | 270 | 6 | 275 | 5.21e-93 | 280 |
MS.gene054629.t1 | MTR_5g023740 | 48.364 | 275 | 127 | 4 | 2 | 270 | 6 | 271 | 4.54e-89 | 269 |
MS.gene054629.t1 | MTR_2g104610 | 31.105 | 344 | 207 | 10 | 23 | 341 | 36 | 374 | 6.25e-43 | 154 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene054629.t1 | AT5G03290 | 84.946 | 372 | 42 | 1 | 1 | 358 | 3 | 374 | 0.0 | 645 |
MS.gene054629.t1 | AT3G09810 | 83.768 | 345 | 56 | 0 | 14 | 358 | 30 | 374 | 0.0 | 613 |
MS.gene054629.t1 | AT4G35260 | 50.746 | 335 | 157 | 2 | 27 | 358 | 37 | 366 | 2.91e-116 | 342 |
MS.gene054629.t1 | AT2G17130 | 47.550 | 347 | 166 | 4 | 18 | 358 | 30 | 366 | 8.26e-112 | 330 |
MS.gene054629.t1 | AT4G35650 | 47.838 | 370 | 170 | 6 | 7 | 358 | 3 | 367 | 2.64e-111 | 329 |
MS.gene054629.t1 | AT2G17130 | 46.974 | 347 | 164 | 5 | 18 | 358 | 30 | 362 | 8.11e-108 | 320 |
MS.gene054629.t1 | AT1G32480 | 42.081 | 221 | 115 | 4 | 34 | 252 | 4 | 213 | 3.06e-56 | 183 |
MS.gene054629.t1 | AT1G31180 | 30.636 | 346 | 210 | 10 | 23 | 341 | 35 | 377 | 2.22e-43 | 155 |
MS.gene054629.t1 | AT1G31180 | 30.636 | 346 | 210 | 10 | 23 | 341 | 50 | 392 | 4.91e-43 | 154 |
MS.gene054629.t1 | AT5G14200 | 31.138 | 334 | 204 | 9 | 31 | 341 | 50 | 380 | 1.09e-42 | 152 |
MS.gene054629.t1 | AT5G14200 | 31.138 | 334 | 204 | 9 | 31 | 341 | 50 | 380 | 1.48e-42 | 153 |
MS.gene054629.t1 | AT1G80560 | 30.383 | 339 | 200 | 9 | 31 | 341 | 46 | 376 | 9.38e-41 | 148 |
MS.gene054629.t1 | AT5G14200 | 26.840 | 231 | 145 | 7 | 31 | 239 | 50 | 278 | 3.31e-13 | 69.7 |
Find 88 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTAAGAAAGCTCTGTGTTCT+AGG | 0.277010 | 3.4:-89382662 | None:intergenic |
CGACCTTGTTACAGCCTTCC+TGG | 0.291185 | 3.4:+89382815 | MS.gene054629:CDS |
GCTGGCTTGATTGGAGGATT+AGG | 0.316432 | 3.4:+89383516 | MS.gene054629:CDS |
AGTGACCTGTTTGACGGATT+CGG | 0.336125 | 3.4:-89381345 | None:intergenic |
TGTTACCATGTTGCGCCATT+TGG | 0.339580 | 3.4:+89383939 | MS.gene054629:CDS |
TAGAATCGGTAAGAAGAAAC+AGG | 0.350254 | 3.4:+89382696 | MS.gene054629:CDS |
GACCTTTGTGCTGGCTTGAT+TGG | 0.351034 | 3.4:+89383507 | MS.gene054629:CDS |
CTCACCTTCCCAGCAATATC+AGG | 0.370076 | 3.4:-89383688 | None:intergenic |
GGCTCAGCACCTGATATTGC+TGG | 0.370773 | 3.4:+89383679 | MS.gene054629:CDS |
TTGGTGATGCCTAACCTTTA+TGG | 0.384596 | 3.4:+89383471 | MS.gene054629:CDS |
TAATGCTCTTCCCATTCAAT+TGG | 0.399010 | 3.4:-89382620 | None:intergenic |
GGGCCAATGGCTACTCCTAT+TGG | 0.403413 | 3.4:+89382731 | MS.gene054629:CDS |
GAATACTATCTGCTTTATCA+TGG | 0.416549 | 3.4:-89383966 | None:intergenic |
GAACGATGCCCTTTGCCAAT+AGG | 0.418274 | 3.4:-89382746 | None:intergenic |
GAACACAGAGCTTTCTTACA+TGG | 0.419020 | 3.4:+89382666 | MS.gene054629:CDS |
CTTTGTGCTGGCTTGATTGG+AGG | 0.426373 | 3.4:+89383510 | MS.gene054629:CDS |
CTGCTGAAGTTCCAATTGAA+TGG | 0.426984 | 3.4:+89382609 | MS.gene054629:CDS |
CGCTGATTATATCACCATAA+AGG | 0.430909 | 3.4:-89383485 | None:intergenic |
TTTGACGGATTCGGCGATCT+CGG | 0.461264 | 3.4:-89381336 | None:intergenic |
ACTTCCTCATATACTATCTC+TGG | 0.461486 | 3.4:-89383286 | None:intergenic |
GATCGCCGAATCCGTCAAAC+AGG | 0.465664 | 3.4:+89381340 | MS.gene054629:CDS |
TGCTGAAGTTCCAATTGAAT+GGG | 0.465872 | 3.4:+89382610 | MS.gene054629:CDS |
AGAAACAGGGTTGGCTTGAA+AGG | 0.465983 | 3.4:+89382710 | MS.gene054629:CDS |
AAGAGAAGTGACCTGTTTGA+CGG | 0.467875 | 3.4:-89381351 | None:intergenic |
TACATGGGAAAGTTTAGAAT+CGG | 0.469643 | 3.4:+89382682 | MS.gene054629:CDS |
CAATTGGAACTTCAGCAGCT+TGG | 0.477455 | 3.4:-89382604 | None:intergenic |
CCTCTCTCTTCCATGTGCCT+TGG | 0.478415 | 3.4:-89383083 | None:intergenic |
CAGATACTTCGACGAACTCT+CGG | 0.482540 | 3.4:+89381227 | MS.gene054629:CDS |
ATAATCAGCGACCTTTGTGC+TGG | 0.491910 | 3.4:+89383498 | MS.gene054629:CDS |
TTGACGGATTCGGCGATCTC+GGG | 0.494209 | 3.4:-89381335 | None:intergenic |
TCCCTTCTGCAATTGTGTTG+AGG | 0.495446 | 3.4:-89383999 | None:intergenic |
ATATCCAGAGATAGTATATG+AGG | 0.495498 | 3.4:+89383282 | MS.gene054629:CDS |
AAGTACCGAACTGCTGATCT+TGG | 0.507542 | 3.4:+89384021 | MS.gene054629:CDS |
GAGGATTAGGCTTGACACCC+AGG | 0.514136 | 3.4:+89383529 | MS.gene054629:CDS |
GGCACGAATCGGAGTGGTGG+AGG | 0.523029 | 3.4:-89381285 | None:intergenic |
CTCGGGACCAATACCATCAC+CGG | 0.527524 | 3.4:-89381318 | None:intergenic |
GGGAAAAGAGTGGCACGAAT+CGG | 0.530220 | 3.4:-89381296 | None:intergenic |
GCACTTGCTGAGGCTGTACA+TGG | 0.533721 | 3.4:+89383658 | MS.gene054629:CDS |
CTTTATCATGGAGATCCAAA+TGG | 0.536914 | 3.4:-89383954 | None:intergenic |
GTGGAGGAAGAGAAGGACCT+AGG | 0.536981 | 3.4:-89381269 | None:intergenic |
TTTCACTATGCCAAGGCACA+TGG | 0.540596 | 3.4:+89383073 | MS.gene054629:CDS |
CGGAGTGGTGGAGGAAGAGA+AGG | 0.541340 | 3.4:-89381276 | None:intergenic |
TAAGAAAGCTCTGTGTTCTA+GGG | 0.543527 | 3.4:-89382661 | None:intergenic |
TGGCTACTCCTATTGGCAAA+GGG | 0.544231 | 3.4:+89382738 | MS.gene054629:CDS |
TACCGAACTGCTGATCTTGG+TGG | 0.549369 | 3.4:+89384024 | MS.gene054629:CDS |
GAAACAGGGTTGGCTTGAAA+GGG | 0.549689 | 3.4:+89382711 | MS.gene054629:CDS |
TTCTGCAATTGTGTTGAGGA+TGG | 0.552934 | 3.4:-89383995 | None:intergenic |
AGCTGCAACATTGGCGAGGG+AGG | 0.553258 | 3.4:+89383631 | MS.gene054629:intron |
AGCACCTGATATTGCTGGGA+AGG | 0.553390 | 3.4:+89383684 | MS.gene054629:CDS |
TGCCACCAAGATCAGCAGTT+CGG | 0.556271 | 3.4:-89384026 | None:intergenic |
GTACAGTGGACTTGAACATC+AGG | 0.556840 | 3.4:+89382898 | MS.gene054629:CDS |
CATTGACAATTGCTGCATGA+TGG | 0.561036 | 3.4:+89383312 | MS.gene054629:CDS |
ATGGCTACTCCTATTGGCAA+AGG | 0.563155 | 3.4:+89382737 | MS.gene054629:CDS |
ATTATATCACCATAAAGGTT+AGG | 0.563728 | 3.4:-89383480 | None:intergenic |
TTTGGGTTATAGGTTGTGAG+GGG | 0.565156 | 3.4:+89382989 | MS.gene054629:intron |
TCCAGCTGCAACATTGGCGA+GGG | 0.568702 | 3.4:+89383628 | MS.gene054629:intron |
AACACAGAGCTTTCTTACAT+GGG | 0.574926 | 3.4:+89382667 | MS.gene054629:CDS |
GAACTCAACAGCAAAGCAGT+TGG | 0.576627 | 3.4:-89383916 | None:intergenic |
ATCCTCAACACAATTGCAGA+AGG | 0.580671 | 3.4:+89383997 | MS.gene054629:CDS |
GCTCAGCACCTGATATTGCT+GGG | 0.581328 | 3.4:+89383680 | MS.gene054629:CDS |
TCGGTAAGAAGAAACAGGGT+TGG | 0.583355 | 3.4:+89382701 | MS.gene054629:CDS |
ACCTAGGGTTTGACAGATAG+CGG | 0.587539 | 3.4:-89381253 | None:intergenic |
AGTGGCACGAATCGGAGTGG+TGG | 0.588339 | 3.4:-89381288 | None:intergenic |
TTCCAGCTGCAACATTGGCG+AGG | 0.595214 | 3.4:+89383627 | MS.gene054629:intron |
TTGCCAATAGGAGTAGCCAT+TGG | 0.595229 | 3.4:-89382734 | None:intergenic |
GGTTGGCTTGAAAGGGCCAA+TGG | 0.602286 | 3.4:+89382718 | MS.gene054629:CDS |
GGGAGGTATTGCACTTGCTG+AGG | 0.604265 | 3.4:+89383648 | MS.gene054629:CDS |
GCCGCTATCTGTCAAACCCT+AGG | 0.605814 | 3.4:+89381252 | MS.gene054629:CDS |
CTGTGTTCTAGGGTCAATTG+TGG | 0.611038 | 3.4:-89382651 | None:intergenic |
TCGGGACCAATACCATCACC+GGG | 0.615254 | 3.4:-89381317 | None:intergenic |
TGGAGGAAGAGAAGGACCTA+GGG | 0.615545 | 3.4:-89381268 | None:intergenic |
CCAAGGCACATGGAAGAGAG+AGG | 0.619352 | 3.4:+89383083 | MS.gene054629:CDS |
GAGATCCAAATGGCGCAACA+TGG | 0.630253 | 3.4:-89383944 | None:intergenic |
AACATTATGCAAAAGACTGA+CGG | 0.632176 | 3.4:+89383127 | MS.gene054629:CDS |
AATGGGAAGAGCATTACGTA+GGG | 0.633880 | 3.4:+89382627 | MS.gene054629:CDS |
CAAGGCACATGGAAGAGAGA+GGG | 0.638399 | 3.4:+89383084 | MS.gene054629:CDS |
CAGGAAGGCTGTAACAAGGT+CGG | 0.645409 | 3.4:-89382814 | None:intergenic |
TAGCCAGGAAGGCTGTAACA+AGG | 0.645729 | 3.4:-89382818 | None:intergenic |
AATACAGAAGGCGAGTACAG+TGG | 0.649635 | 3.4:+89382884 | MS.gene054629:CDS |
ACAATCCGTGAAAATACAGA+AGG | 0.651487 | 3.4:+89382872 | MS.gene054629:CDS |
GAATGGGAAGAGCATTACGT+AGG | 0.653825 | 3.4:+89382626 | MS.gene054629:CDS |
ACCATCACCGGGGAAAAGAG+TGG | 0.655812 | 3.4:-89381306 | None:intergenic |
ACGTCAAGCAAGTTTACGAG+TGG | 0.657438 | 3.4:+89383039 | MS.gene054629:CDS |
TCCTCAACACAATTGCAGAA+GGG | 0.663199 | 3.4:+89383998 | MS.gene054629:CDS |
AGAATCGGTAAGAAGAAACA+GGG | 0.666965 | 3.4:+89382697 | MS.gene054629:CDS |
AAGAGTGGCACGAATCGGAG+TGG | 0.687099 | 3.4:-89381291 | None:intergenic |
CTCCAATCAAGCCAGCACAA+AGG | 0.693100 | 3.4:-89383509 | None:intergenic |
CGGGACCAATACCATCACCG+GGG | 0.794777 | 3.4:-89381316 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAATTATAAAATTAAATTT+GGG | - | chr3.4:89381483-89381502 | None:intergenic | 0.0% |
!! | TATAATTATAAAATTAAATT+TGG | - | chr3.4:89381484-89381503 | None:intergenic | 0.0% |
!!! | TTAATTTATTTAGCATTTTT+GGG | + | chr3.4:89382972-89382991 | MS.gene054629:intron | 10.0% |
!!! | TTTAATTTATTTAGCATTTT+TGG | + | chr3.4:89382971-89382990 | MS.gene054629:intron | 10.0% |
!!! | TTTGTTTTGTTTTAAATTTT+GGG | + | chr3.4:89383555-89383574 | MS.gene054629:intron | 10.0% |
!!! | TTTTGTTTTGTTTTAAATTT+TGG | + | chr3.4:89383554-89383573 | MS.gene054629:intron | 10.0% |
!! | AACAAGTGAAATTTAATTAA+AGG | - | chr3.4:89383865-89383884 | None:intergenic | 15.0% |
!!! | TTTTTTAAACTGATACAAAT+GGG | + | chr3.4:89381603-89381622 | MS.gene054629:intron | 15.0% |
!!! | TTTTTTTAAACTGATACAAA+TGG | + | chr3.4:89381602-89381621 | MS.gene054629:intron | 15.0% |
!! | AAATTAAATTGATCAGAACT+TGG | - | chr3.4:89382959-89382978 | None:intergenic | 20.0% |
!! | AATAAGAAGTGAGAAAAATA+AGG | - | chr3.4:89381712-89381731 | None:intergenic | 20.0% |
!! | TAAAACAAAACAAAAAACCT+GGG | - | chr3.4:89383549-89383568 | None:intergenic | 20.0% |
!! | TAAATTTGGGAAAACATATT+CGG | - | chr3.4:89381470-89381489 | None:intergenic | 20.0% |
!! | TTAAAACAAAACAAAAAACC+TGG | - | chr3.4:89383550-89383569 | None:intergenic | 20.0% |
!!! | ACAAGCATAAAGTTTTAAAA+CGG | - | chr3.4:89383744-89383763 | None:intergenic | 20.0% |
!!! | GTTTTAAAACGGATAATATA+TGG | - | chr3.4:89383733-89383752 | None:intergenic | 20.0% |
!!! | TTATTTTTCTCACTTCTTAT+TGG | + | chr3.4:89381711-89381730 | MS.gene054629:intron | 20.0% |
!!! | TTTTTACTATTGCTACAATT+AGG | + | chr3.4:89382577-89382596 | MS.gene054629:intron | 20.0% |
! | AAAATGAACCAATATACTGA+TGG | - | chr3.4:89382372-89382391 | None:intergenic | 25.0% |
! | AAATAAGATAACAGCAAACA+AGG | - | chr3.4:89381527-89381546 | None:intergenic | 25.0% |
! | AAATGAACCAATATACTGAT+GGG | - | chr3.4:89382371-89382390 | None:intergenic | 25.0% |
! | AACTTGAGCTTATAAAGAAT+TGG | + | chr3.4:89381640-89381659 | MS.gene054629:intron | 25.0% |
! | ATTATATCACCATAAAGGTT+AGG | - | chr3.4:89383483-89383502 | None:intergenic | 25.0% |
! | ATTTAAGGAGTAAATATCCA+GGG | - | chr3.4:89382291-89382310 | None:intergenic | 25.0% |
! | CAACAAAATTGTCAATCAAA+TGG | - | chr3.4:89381685-89381704 | None:intergenic | 25.0% |
! | CTAAGAGATTAAAGGATTTA+AGG | - | chr3.4:89382306-89382325 | None:intergenic | 25.0% |
! | GTCATTATTACTAGTATTCA+AGG | - | chr3.4:89383216-89383235 | None:intergenic | 25.0% |
! | TATAAGCTCAAGTTCAAATT+AGG | - | chr3.4:89381634-89381653 | None:intergenic | 25.0% |
! | TTCTTATTGGTCAAAAACAA+TGG | + | chr3.4:89381724-89381743 | MS.gene054629:intron | 25.0% |
!! | TAAGTTCTTTTCTTAGAGTA+AGG | - | chr3.4:89382778-89382797 | None:intergenic | 25.0% |
!!! | AAACTTTATGCTTGTTTTCA+TGG | + | chr3.4:89383749-89383768 | MS.gene054629:intron | 25.0% |
!!! | ATTGAGACAGAGTATTTTAT+AGG | - | chr3.4:89383187-89383206 | None:intergenic | 25.0% |
!!! | ATTTAGCATTTTTGGGTTAT+AGG | + | chr3.4:89382979-89382998 | MS.gene054629:intron | 25.0% |
!!! | TGCTTTGTTTGTTTCTTATT+GGG | + | chr3.4:89382494-89382513 | MS.gene054629:intron | 25.0% |
!!! | TTGCTTTGTTTGTTTCTTAT+TGG | + | chr3.4:89382493-89382512 | MS.gene054629:intron | 25.0% |
AAAACAATGGAGAGAGAAAA+AGG | + | chr3.4:89381737-89381756 | MS.gene054629:intron | 30.0% | |
AACATTATGCAAAAGACTGA+CGG | + | chr3.4:89383127-89383146 | MS.gene054629:CDS | 30.0% | |
AAGTTTCTTAGTTCATCTGA+AGG | - | chr3.4:89383815-89383834 | None:intergenic | 30.0% | |
AATACTATAGTTTATGTGCG+AGG | + | chr3.4:89382156-89382175 | MS.gene054629:intron | 30.0% | |
ATATCCAGAGATAGTATATG+AGG | + | chr3.4:89383282-89383301 | MS.gene054629:CDS | 30.0% | |
GAATACTATCTGCTTTATCA+TGG | - | chr3.4:89383969-89383988 | None:intergenic | 30.0% | |
GATTTAAGGAGTAAATATCC+AGG | - | chr3.4:89382292-89382311 | None:intergenic | 30.0% | |
GTACAAAAGTTGTCAAAAAG+TGG | + | chr3.4:89381804-89381823 | MS.gene054629:intron | 30.0% | |
TCTTTCTTTGTCAATTGTCA+TGG | + | chr3.4:89382397-89382416 | MS.gene054629:intron | 30.0% | |
! | TACATGGGAAAGTTTAGAAT+CGG | + | chr3.4:89382682-89382701 | MS.gene054629:CDS | 30.0% |
! | TTGCAATTGACTTAAACCTT+TGG | + | chr3.4:89381553-89381572 | MS.gene054629:intron | 30.0% |
!! | AAATTTCACTTGTTTTCCTG+TGG | + | chr3.4:89383871-89383890 | MS.gene054629:intron | 30.0% |
!! | TTAACTTGATGAGTTGATGT+AGG | + | chr3.4:89383344-89383363 | MS.gene054629:intron | 30.0% |
AACACAGAGCTTTCTTACAT+GGG | + | chr3.4:89382667-89382686 | MS.gene054629:CDS | 35.0% | |
AAGTTAGGTCTGTTTGGTTA+TGG | + | chr3.4:89381926-89381945 | MS.gene054629:intron | 35.0% | |
ACAATCCGTGAAAATACAGA+AGG | + | chr3.4:89382872-89382891 | MS.gene054629:CDS | 35.0% | |
ACTTCCTCATATACTATCTC+TGG | - | chr3.4:89383289-89383308 | None:intergenic | 35.0% | |
AGAATCGGTAAGAAGAAACA+GGG | + | chr3.4:89382697-89382716 | MS.gene054629:CDS | 35.0% | |
ATGGTTCAAAATACAGCATC+TGG | + | chr3.4:89381878-89381897 | MS.gene054629:intron | 35.0% | |
CAAACAAAGCAAGAGATAGA+AGG | - | chr3.4:89382485-89382504 | None:intergenic | 35.0% | |
CAAATTCTGCATAAAACCAC+AGG | - | chr3.4:89383890-89383909 | None:intergenic | 35.0% | |
CCAACGAAAGAAAACAGAAT+GGG | - | chr3.4:89382345-89382364 | None:intergenic | 35.0% | |
CTTTATCATGGAGATCCAAA+TGG | - | chr3.4:89383957-89383976 | None:intergenic | 35.0% | |
TAAGAAAGCTCTGTGTTCTA+GGG | - | chr3.4:89382664-89382683 | None:intergenic | 35.0% | |
TAATGCTCTTCCCATTCAAT+TGG | - | chr3.4:89382623-89382642 | None:intergenic | 35.0% | |
TAGAATCGGTAAGAAGAAAC+AGG | + | chr3.4:89382696-89382715 | MS.gene054629:CDS | 35.0% | |
TGCTGAAGTTCCAATTGAAT+GGG | + | chr3.4:89382610-89382629 | MS.gene054629:CDS | 35.0% | |
TGGTTGTGCTAAGAGATTAA+AGG | - | chr3.4:89382314-89382333 | None:intergenic | 35.0% | |
TTTGTCAATTGTCATGGATG+TGG | + | chr3.4:89382403-89382422 | MS.gene054629:intron | 35.0% | |
! | ACCAATACATCAAAAAGTGC+AGG | - | chr3.4:89383456-89383475 | None:intergenic | 35.0% |
! | CCATTCTGTTTTCTTTCGTT+GGG | + | chr3.4:89382343-89382362 | MS.gene054629:intron | 35.0% |
! | CGCTGATTATATCACCATAA+AGG | - | chr3.4:89383488-89383507 | None:intergenic | 35.0% |
! | GTCAGTCTTTTGCATAATGT+TGG | - | chr3.4:89383128-89383147 | None:intergenic | 35.0% |
! | TTAGTATTTTCTCCATTGCC+AGG | + | chr3.4:89382258-89382277 | MS.gene054629:intron | 35.0% |
!! | AGATGCTGTATTTTGAACCA+TGG | - | chr3.4:89381879-89381898 | None:intergenic | 35.0% |
!! | GATATTTTTCAGCAACCTCA+CGG | - | chr3.4:89383267-89383286 | None:intergenic | 35.0% |
!! | TCCTGCACTTTTTGATGTAT+TGG | + | chr3.4:89383452-89383471 | MS.gene054629:CDS | 35.0% |
!!! | CTGTGGTTTTATGCAGAATT+TGG | + | chr3.4:89383888-89383907 | MS.gene054629:intron | 35.0% |
!!! | GACACTAGTTTTATCTCCAA+AGG | - | chr3.4:89381572-89381591 | None:intergenic | 35.0% |
!!! | TTATTTTTAGTGTTGCCGTG+AGG | + | chr3.4:89383249-89383268 | MS.gene054629:intron | 35.0% |
!!! | TTTTGGGTTATAGGTTGTGA+GGG | + | chr3.4:89382988-89383007 | MS.gene054629:intron | 35.0% |
!!! | TTTTTGGGTTATAGGTTGTG+AGG | + | chr3.4:89382987-89383006 | MS.gene054629:intron | 35.0% |
AAGAGAAGTGACCTGTTTGA+CGG | - | chr3.4:89381354-89381373 | None:intergenic | 40.0% | |
AATACAGCATCTGGTGATAG+TGG | + | chr3.4:89381887-89381906 | MS.gene054629:intron | 40.0% | |
AATATCCAGGGTTTGAATCC+TGG | - | chr3.4:89382279-89382298 | None:intergenic | 40.0% | |
AATCCTAGGGTATGTTTGGA+TGG | - | chr3.4:89382119-89382138 | None:intergenic | 40.0% | |
ACGAGTAAGTTAGGTCTGTT+TGG | + | chr3.4:89381920-89381939 | MS.gene054629:intron | 40.0% | |
AGAGAGAAAAAGGATGAGAG+AGG | + | chr3.4:89381747-89381766 | MS.gene054629:intron | 40.0% | |
ATCCTCAACACAATTGCAGA+AGG | + | chr3.4:89383997-89384016 | MS.gene054629:CDS | 40.0% | |
ATGGAGGAGAGGATTTAGAA+GGG | + | chr3.4:89381945-89381964 | MS.gene054629:intron | 40.0% | |
CAGGTCACTTCTCTTTCAAT+TGG | + | chr3.4:89381359-89381378 | MS.gene054629:intron | 40.0% | |
CATTGACAATTGCTGCATGA+TGG | + | chr3.4:89383312-89383331 | MS.gene054629:CDS | 40.0% | |
CCCAACGAAAGAAAACAGAA+TGG | - | chr3.4:89382346-89382365 | None:intergenic | 40.0% | |
CTGCTGAAGTTCCAATTGAA+TGG | + | chr3.4:89382609-89382628 | MS.gene054629:CDS | 40.0% | |
GAACACAGAGCTTTCTTACA+TGG | + | chr3.4:89382666-89382685 | MS.gene054629:CDS | 40.0% | |
GTAAGAAAGCTCTGTGTTCT+AGG | - | chr3.4:89382665-89382684 | None:intergenic | 40.0% | |
TATGGAGGAGAGGATTTAGA+AGG | + | chr3.4:89381944-89381963 | MS.gene054629:intron | 40.0% | |
TCCTCAACACAATTGCAGAA+GGG | + | chr3.4:89383998-89384017 | MS.gene054629:CDS | 40.0% | |
TTAGGTCTGTTTGGTTATGG+AGG | + | chr3.4:89381929-89381948 | MS.gene054629:intron | 40.0% | |
TTCTGCAATTGTGTTGAGGA+TGG | - | chr3.4:89383998-89384017 | None:intergenic | 40.0% | |
TTGCTGCATGATGGTAATCT+TGG | + | chr3.4:89383321-89383340 | MS.gene054629:intron | 40.0% | |
TTGGGTTCCCATCAGTATAT+TGG | + | chr3.4:89382361-89382380 | MS.gene054629:intron | 40.0% | |
! | ACTCGCCTTCTGTATTTTCA+CGG | - | chr3.4:89382880-89382899 | None:intergenic | 40.0% |
! | ATCTTTTCCAGCTGCAACAT+TGG | + | chr3.4:89383622-89383641 | MS.gene054629:intron | 40.0% |
! | CCCATTCTGTTTTCTTTCGT+TGG | + | chr3.4:89382342-89382361 | MS.gene054629:intron | 40.0% |
! | GTATGCTTTTCACTATGCCA+AGG | + | chr3.4:89383066-89383085 | MS.gene054629:CDS | 40.0% |
! | GTTTTCTTCGAAACCAGTCA+TGG | + | chr3.4:89381396-89381415 | MS.gene054629:intron | 40.0% |
! | TTTGGGTTATAGGTTGTGAG+GGG | + | chr3.4:89382989-89383008 | MS.gene054629:intron | 40.0% |
!! | AATGGGAAGAGCATTACGTA+GGG | + | chr3.4:89382627-89382646 | MS.gene054629:CDS | 40.0% |
!! | TCATATCGAGTTTTGTAGCC+AGG | - | chr3.4:89382836-89382855 | None:intergenic | 40.0% |
!! | TTGGTGATGCCTAACCTTTA+TGG | + | chr3.4:89383471-89383490 | MS.gene054629:CDS | 40.0% |
AAACAGAATGGGAGCTCACT+TGG | - | chr3.4:89382334-89382353 | None:intergenic | 45.0% | |
AAGGTTGTCCTTGATGCAAG+TGG | - | chr3.4:89383796-89383815 | None:intergenic | 45.0% | |
AATACAGAAGGCGAGTACAG+TGG | + | chr3.4:89382884-89382903 | MS.gene054629:CDS | 45.0% | |
ACCCAATAGCAGCAATCCTA+GGG | - | chr3.4:89382132-89382151 | None:intergenic | 45.0% | |
ACCCTAGGATTGCTGCTATT+GGG | + | chr3.4:89382128-89382147 | MS.gene054629:intron | 45.0% | |
ACCTAGGGTTTGACAGATAG+CGG | - | chr3.4:89381256-89381275 | None:intergenic | 45.0% | |
ACGTCAAGCAAGTTTACGAG+TGG | + | chr3.4:89383039-89383058 | MS.gene054629:CDS | 45.0% | |
ATAATCAGCGACCTTTGTGC+TGG | + | chr3.4:89383498-89383517 | MS.gene054629:CDS | 45.0% | |
ATGGCTACTCCTATTGGCAA+AGG | + | chr3.4:89382737-89382756 | MS.gene054629:CDS | 45.0% | |
CAATTGGAACTTCAGCAGCT+TGG | - | chr3.4:89382607-89382626 | None:intergenic | 45.0% | |
CAGATACTTCGACGAACTCT+CGG | + | chr3.4:89381227-89381246 | MS.gene054629:CDS | 45.0% | |
CAGCAATCCTAGGGTATGTT+TGG | - | chr3.4:89382123-89382142 | None:intergenic | 45.0% | |
CCATGGATGATTGTAGTGAC+AGG | - | chr3.4:89381862-89381881 | None:intergenic | 45.0% | |
CCTGTCACTACAATCATCCA+TGG | + | chr3.4:89381859-89381878 | MS.gene054629:intron | 45.0% | |
CTAGGGTATGTTTGGATGGA+GGG | - | chr3.4:89382115-89382134 | None:intergenic | 45.0% | |
GAACTCAACAGCAAAGCAGT+TGG | - | chr3.4:89383919-89383938 | None:intergenic | 45.0% | |
GAATGTGTTAGCGAACCTTC+AGG | - | chr3.4:89383159-89383178 | None:intergenic | 45.0% | |
GATTCTTCACAAGCTGTGGA+TGG | - | chr3.4:89383434-89383453 | None:intergenic | 45.0% | |
GTGTGTGGAACGAGTAAGTT+AGG | + | chr3.4:89381911-89381930 | MS.gene054629:intron | 45.0% | |
TACCCTAGGATTGCTGCTAT+TGG | + | chr3.4:89382127-89382146 | MS.gene054629:intron | 45.0% | |
TAGGGTATGTTTGGATGGAG+GGG | - | chr3.4:89382114-89382133 | None:intergenic | 45.0% | |
TCCCTTCTGCAATTGTGTTG+AGG | - | chr3.4:89384002-89384021 | None:intergenic | 45.0% | |
TCGGTAAGAAGAAACAGGGT+TGG | + | chr3.4:89382701-89382720 | MS.gene054629:CDS | 45.0% | |
TCTGTTTGGTTATGGAGGAG+AGG | + | chr3.4:89381934-89381953 | MS.gene054629:intron | 45.0% | |
TGGCTACTCCTATTGGCAAA+GGG | + | chr3.4:89382738-89382757 | MS.gene054629:CDS | 45.0% | |
TGTTACCATGTTGCGCCATT+TGG | + | chr3.4:89383939-89383958 | MS.gene054629:CDS | 45.0% | |
TTGCCAATAGGAGTAGCCAT+TGG | - | chr3.4:89382737-89382756 | None:intergenic | 45.0% | |
TTTCACTATGCCAAGGCACA+TGG | + | chr3.4:89383073-89383092 | MS.gene054629:CDS | 45.0% | |
TTTGTGCACCACTTGCATCA+AGG | + | chr3.4:89383785-89383804 | MS.gene054629:intron | 45.0% | |
! | GTACAGTGGACTTGAACATC+AGG | + | chr3.4:89382898-89382917 | MS.gene054629:CDS | 45.0% |
!! | AAGTACCGAACTGCTGATCT+TGG | + | chr3.4:89384021-89384040 | MS.gene054629:CDS | 45.0% |
!! | AGAAACAGGGTTGGCTTGAA+AGG | + | chr3.4:89382710-89382729 | MS.gene054629:CDS | 45.0% |
!! | AGTGACCTGTTTGACGGATT+CGG | - | chr3.4:89381348-89381367 | None:intergenic | 45.0% |
!! | ATCGAGTTTTGTAGCCAGGA+AGG | - | chr3.4:89382832-89382851 | None:intergenic | 45.0% |
!! | CTGTGTTCTAGGGTCAATTG+TGG | - | chr3.4:89382654-89382673 | None:intergenic | 45.0% |
!! | GAAACAGGGTTGGCTTGAAA+GGG | + | chr3.4:89382711-89382730 | MS.gene054629:CDS | 45.0% |
!! | GAATGGGAAGAGCATTACGT+AGG | + | chr3.4:89382626-89382645 | MS.gene054629:CDS | 45.0% |
AGCACCTGATATTGCTGGGA+AGG | + | chr3.4:89383684-89383703 | MS.gene054629:CDS | 50.0% | |
CAAGGCACATGGAAGAGAGA+GGG | + | chr3.4:89383084-89383103 | MS.gene054629:CDS | 50.0% | |
CACCCAATAGCAGCAATCCT+AGG | - | chr3.4:89382133-89382152 | None:intergenic | 50.0% | |
CAGGAAGGCTGTAACAAGGT+CGG | - | chr3.4:89382817-89382836 | None:intergenic | 50.0% | |
CAGGGTTTGAATCCTGGCAA+TGG | - | chr3.4:89382273-89382292 | None:intergenic | 50.0% | |
CATTGCCAGGATTCAAACCC+TGG | + | chr3.4:89382271-89382290 | MS.gene054629:intron | 50.0% | |
CCTAGGGTATGTTTGGATGG+AGG | - | chr3.4:89382116-89382135 | None:intergenic | 50.0% | |
CCTCCATCCAAACATACCCT+AGG | + | chr3.4:89382113-89382132 | MS.gene054629:intron | 50.0% | |
CTCACCTTCCCAGCAATATC+AGG | - | chr3.4:89383691-89383710 | None:intergenic | 50.0% | |
CTCCAATCAAGCCAGCACAA+AGG | - | chr3.4:89383512-89383531 | None:intergenic | 50.0% | |
CTTCGAAACCAGTCATGGCA+TGG | + | chr3.4:89381401-89381420 | MS.gene054629:intron | 50.0% | |
GAACGATGCCCTTTGCCAAT+AGG | - | chr3.4:89382749-89382768 | None:intergenic | 50.0% | |
GAGATCCAAATGGCGCAACA+TGG | - | chr3.4:89383947-89383966 | None:intergenic | 50.0% | |
GCAGGATTCTTCACAAGCTG+TGG | - | chr3.4:89383438-89383457 | None:intergenic | 50.0% | |
GCTCAGCACCTGATATTGCT+GGG | + | chr3.4:89383680-89383699 | MS.gene054629:CDS | 50.0% | |
GGGAAAAGAGTGGCACGAAT+CGG | - | chr3.4:89381299-89381318 | None:intergenic | 50.0% | |
GTATGTTTGGATGGAGGGGA+GGG | - | chr3.4:89382110-89382129 | None:intergenic | 50.0% | |
TACCGAACTGCTGATCTTGG+TGG | + | chr3.4:89384024-89384043 | MS.gene054629:CDS | 50.0% | |
TAGCCAGGAAGGCTGTAACA+AGG | - | chr3.4:89382821-89382840 | None:intergenic | 50.0% | |
TATGTTTGGATGGAGGGGAG+GGG | - | chr3.4:89382109-89382128 | None:intergenic | 50.0% | |
TGCCACCAAGATCAGCAGTT+CGG | - | chr3.4:89384029-89384048 | None:intergenic | 50.0% | |
TGGAGGAAGAGAAGGACCTA+GGG | - | chr3.4:89381271-89381290 | None:intergenic | 50.0% | |
! | CTCTGCTCTGGGTTTGGTTA+CGG | + | chr3.4:89382181-89382200 | MS.gene054629:intron | 50.0% |
! | GACTGACGGTCTTTTCCTGA+AGG | + | chr3.4:89383141-89383160 | MS.gene054629:CDS | 50.0% |
! | GTCTGTTTTGCTGCTGAGAG+TGG | + | chr3.4:89382427-89382446 | MS.gene054629:intron | 50.0% |
! | TCTGCTCTGGGTTTGGTTAC+GGG | + | chr3.4:89382182-89382201 | MS.gene054629:intron | 50.0% |
!! | ATTCGTGCCACTCTTTTCCC+CGG | + | chr3.4:89381299-89381318 | MS.gene054629:CDS | 50.0% |
!! | CTTTGTGCTGGCTTGATTGG+AGG | + | chr3.4:89383510-89383529 | MS.gene054629:CDS | 50.0% |
!! | CTTTTCCCCGGTGATGGTAT+TGG | + | chr3.4:89381311-89381330 | MS.gene054629:CDS | 50.0% |
!! | GACCTTTGTGCTGGCTTGAT+TGG | + | chr3.4:89383507-89383526 | MS.gene054629:CDS | 50.0% |
!! | GCTGGCTTGATTGGAGGATT+AGG | + | chr3.4:89383516-89383535 | MS.gene054629:CDS | 50.0% |
!! | TCTGGTGATAGTGGTGTGTG+TGG | + | chr3.4:89381896-89381915 | MS.gene054629:intron | 50.0% |
!! | TTTGACGGATTCGGCGATCT+CGG | - | chr3.4:89381339-89381358 | None:intergenic | 50.0% |
AAGAGTGGCACGAATCGGAG+TGG | - | chr3.4:89381294-89381313 | None:intergenic | 55.0% | |
ACCATCACCGGGGAAAAGAG+TGG | - | chr3.4:89381309-89381328 | None:intergenic | 55.0% | |
ATGTTTGGATGGAGGGGAGG+GGG | - | chr3.4:89382108-89382127 | None:intergenic | 55.0% | |
ATTGCTGGGAAGGTGAGCTG+TGG | + | chr3.4:89383694-89383713 | MS.gene054629:intron | 55.0% | |
CCAAGGCACATGGAAGAGAG+AGG | + | chr3.4:89383083-89383102 | MS.gene054629:CDS | 55.0% | |
CCTCTCTCTTCCATGTGCCT+TGG | - | chr3.4:89383086-89383105 | None:intergenic | 55.0% | |
CGACCTTGTTACAGCCTTCC+TGG | + | chr3.4:89382815-89382834 | MS.gene054629:CDS | 55.0% | |
CTCGGGACCAATACCATCAC+CGG | - | chr3.4:89381321-89381340 | None:intergenic | 55.0% | |
GACACATGCCATGCCATGAC+TGG | - | chr3.4:89381412-89381431 | None:intergenic | 55.0% | |
GAGGATTAGGCTTGACACCC+AGG | + | chr3.4:89383529-89383548 | MS.gene054629:CDS | 55.0% | |
GATCGCCGAATCCGTCAAAC+AGG | + | chr3.4:89381340-89381359 | MS.gene054629:CDS | 55.0% | |
GCCGCTATCTGTCAAACCCT+AGG | + | chr3.4:89381252-89381271 | MS.gene054629:CDS | 55.0% | |
GGCTCAGCACCTGATATTGC+TGG | + | chr3.4:89383679-89383698 | MS.gene054629:CDS | 55.0% | |
GGGCCAATGGCTACTCCTAT+TGG | + | chr3.4:89382731-89382750 | MS.gene054629:CDS | 55.0% | |
GGTATGTTTGGATGGAGGGG+AGG | - | chr3.4:89382111-89382130 | None:intergenic | 55.0% | |
GTGGAGGAAGAGAAGGACCT+AGG | - | chr3.4:89381272-89381291 | None:intergenic | 55.0% | |
TCCAGCTGCAACATTGGCGA+GGG | + | chr3.4:89383628-89383647 | MS.gene054629:intron | 55.0% | |
TCGGGACCAATACCATCACC+GGG | - | chr3.4:89381320-89381339 | None:intergenic | 55.0% | |
TTCCAGCTGCAACATTGGCG+AGG | + | chr3.4:89383627-89383646 | MS.gene054629:intron | 55.0% | |
! | CTGCTCTGGGTTTGGTTACG+GGG | + | chr3.4:89382183-89382202 | MS.gene054629:intron | 55.0% |
! | GCACTTGCTGAGGCTGTACA+TGG | + | chr3.4:89383658-89383677 | MS.gene054629:CDS | 55.0% |
! | TGCTCTGGGTTTGGTTACGG+GGG | + | chr3.4:89382184-89382203 | MS.gene054629:intron | 55.0% |
!! | GGGAGGTATTGCACTTGCTG+AGG | + | chr3.4:89383648-89383667 | MS.gene054629:CDS | 55.0% |
!! | GGTTGGCTTGAAAGGGCCAA+TGG | + | chr3.4:89382718-89382737 | MS.gene054629:CDS | 55.0% |
!! | TTGACGGATTCGGCGATCTC+GGG | - | chr3.4:89381338-89381357 | None:intergenic | 55.0% |
AGCTGCAACATTGGCGAGGG+AGG | + | chr3.4:89383631-89383650 | MS.gene054629:intron | 60.0% | |
AGTGGCACGAATCGGAGTGG+TGG | - | chr3.4:89381291-89381310 | None:intergenic | 60.0% | |
ATGTGCGAGGAGCTCTGCTC+TGG | + | chr3.4:89382169-89382188 | MS.gene054629:intron | 60.0% | |
CGGGACCAATACCATCACCG+GGG | - | chr3.4:89381319-89381338 | None:intergenic | 60.0% | |
TCCCTCGCCAATGTTGCAGC+TGG | - | chr3.4:89383632-89383651 | None:intergenic | 60.0% | |
TGTGCGAGGAGCTCTGCTCT+GGG | + | chr3.4:89382170-89382189 | MS.gene054629:intron | 60.0% | |
! | CGGAGTGGTGGAGGAAGAGA+AGG | - | chr3.4:89381279-89381298 | None:intergenic | 60.0% |
! | GAGGAGCTCTGCTCTGGGTT+TGG | + | chr3.4:89382175-89382194 | MS.gene054629:intron | 60.0% |
! | GCCACTCTTTTCCCCGGTGA+TGG | + | chr3.4:89381305-89381324 | MS.gene054629:CDS | 60.0% |
! | GCTCTGGGTTTGGTTACGGG+GGG | + | chr3.4:89382185-89382204 | MS.gene054629:intron | 60.0% |
GGCACGAATCGGAGTGGTGG+AGG | - | chr3.4:89381288-89381307 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.4 | gene | 89381218 | 89384095 | 89381218 | ID=MS.gene054629 |
chr3.4 | mRNA | 89381218 | 89384095 | 89381218 | ID=MS.gene054629.t1;Parent=MS.gene054629 |
chr3.4 | exon | 89381218 | 89381361 | 89381218 | ID=MS.gene054629.t1.exon1;Parent=MS.gene054629.t1 |
chr3.4 | CDS | 89381218 | 89381361 | 89381218 | ID=cds.MS.gene054629.t1;Parent=MS.gene054629.t1 |
chr3.4 | exon | 89382599 | 89382919 | 89382599 | ID=MS.gene054629.t1.exon2;Parent=MS.gene054629.t1 |
chr3.4 | CDS | 89382599 | 89382919 | 89382599 | ID=cds.MS.gene054629.t1;Parent=MS.gene054629.t1 |
chr3.4 | exon | 89383001 | 89383162 | 89383001 | ID=MS.gene054629.t1.exon3;Parent=MS.gene054629.t1 |
chr3.4 | CDS | 89383001 | 89383162 | 89383001 | ID=cds.MS.gene054629.t1;Parent=MS.gene054629.t1 |
chr3.4 | exon | 89383259 | 89383333 | 89383259 | ID=MS.gene054629.t1.exon4;Parent=MS.gene054629.t1 |
chr3.4 | CDS | 89383259 | 89383333 | 89383259 | ID=cds.MS.gene054629.t1;Parent=MS.gene054629.t1 |
chr3.4 | exon | 89383441 | 89383550 | 89383441 | ID=MS.gene054629.t1.exon5;Parent=MS.gene054629.t1 |
chr3.4 | CDS | 89383441 | 89383550 | 89383441 | ID=cds.MS.gene054629.t1;Parent=MS.gene054629.t1 |
chr3.4 | exon | 89383633 | 89383705 | 89383633 | ID=MS.gene054629.t1.exon6;Parent=MS.gene054629.t1 |
chr3.4 | CDS | 89383633 | 89383705 | 89383633 | ID=cds.MS.gene054629.t1;Parent=MS.gene054629.t1 |
chr3.4 | exon | 89383904 | 89384095 | 89383904 | ID=MS.gene054629.t1.exon7;Parent=MS.gene054629.t1 |
chr3.4 | CDS | 89383904 | 89384095 | 89383904 | ID=cds.MS.gene054629.t1;Parent=MS.gene054629.t1 |
Gene Sequence |
Protein sequence |