AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene27219


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27219.t1 MTR_8g074030 100.000 371 0 0 1 371 1 371 0.0 764
MS.gene27219.t1 MTR_8g074030 98.922 371 0 1 1 371 1 367 0.0 751
MS.gene27219.t1 MTR_5g023740 88.949 371 37 1 1 371 1 367 0.0 676
MS.gene27219.t1 MTR_5g023740 87.871 371 37 2 1 371 1 363 0.0 663
MS.gene27219.t1 MTR_5g023740 89.680 281 25 1 1 281 1 277 0.0 518
MS.gene27219.t1 MTR_5g023740 89.680 281 25 1 1 281 1 277 0.0 518
MS.gene27219.t1 MTR_5g023740 88.256 281 25 2 1 281 1 273 0.0 505
MS.gene27219.t1 MTR_1g064070 51.744 344 156 4 34 370 18 358 1.56e-118 348
MS.gene27219.t1 MTR_3g101470 51.786 336 154 3 40 370 21 353 7.16e-118 346
MS.gene27219.t1 MTR_2g104610 29.333 375 209 18 17 353 18 374 7.02e-27 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27219.t1 AT4G35260 85.095 369 52 1 3 371 2 367 0.0 643
MS.gene27219.t1 AT2G17130 82.927 369 60 1 3 371 2 367 0.0 627
MS.gene27219.t1 AT4G35650 81.250 368 67 1 4 371 3 368 0.0 624
MS.gene27219.t1 AT2G17130 81.843 369 60 2 3 371 2 363 0.0 614
MS.gene27219.t1 AT5G03290 50.595 336 158 2 40 370 42 374 2.01e-116 343
MS.gene27219.t1 AT3G09810 49.107 336 163 2 40 370 42 374 8.77e-111 328
MS.gene27219.t1 AT1G32480 62.946 224 68 5 41 261 2 213 6.07e-93 277
MS.gene27219.t1 AT1G80560 29.076 368 207 15 44 371 45 398 1.14e-29 118
MS.gene27219.t1 AT5G14200 28.986 345 197 14 44 353 49 380 5.93e-29 116
MS.gene27219.t1 AT5G14200 28.986 345 197 14 44 353 49 380 6.35e-29 116
MS.gene27219.t1 AT1G31180 28.406 345 199 14 44 353 46 377 1.58e-27 112
MS.gene27219.t1 AT1G31180 28.406 345 199 14 44 353 61 392 2.79e-27 112
MS.gene27219.t1 AT5G14200 26.891 238 137 9 44 250 49 280 2.95e-11 64.3

Find 107 sgRNAs with CRISPR-Local

Find 360 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAATAAGGTTTGTCTTAA+AGG 0.160532 8.3:-28962312 MS.gene27219:CDS
CGATCCCGTCGCCGGGGATT+AGG 0.172397 8.3:+28962460 None:intergenic
ACGTTGATATTGTAGTTATT+AGG 0.239338 8.3:-28962164 MS.gene27219:CDS
CTAGATTTCCATACAGGTTT+GGG 0.266073 8.3:+28959478 None:intergenic
CGTTGATATTGTAGTTATTA+GGG 0.273382 8.3:-28962163 MS.gene27219:CDS
TGAATCGATCCGTAAGAATA+AGG 0.290840 8.3:-28962325 MS.gene27219:CDS
TCACTTGCTTTCTGTTGTTC+AGG 0.298640 8.3:+28960776 None:intergenic
AATACTGCAGCTGGCATTGC+TGG 0.307925 8.3:-28959450 MS.gene27219:CDS
ATTTCGTTGTATTTAATTCC+AGG 0.346017 8.3:+28960673 None:intergenic
GGGATTAGGGTTACGGGACG+GGG 0.348439 8.3:+28962474 None:intergenic
TTACTGCATCGACAACTTCT+TGG 0.351267 8.3:+28958044 None:intergenic
GCTTGCAGATGGTTTGTTCT+TGG 0.354766 8.3:-28960725 MS.gene27219:CDS
CTTGAACATGAGGTTGTTCC+CGG 0.354977 8.3:-28962114 MS.gene27219:CDS
GCTGGCATTGCTGGAGGCAC+TGG 0.356515 8.3:-28959441 MS.gene27219:CDS
GATCCCGTCGCCGGGGATTA+GGG 0.361349 8.3:+28962461 None:intergenic
GCTTCATTATATTTGCTTTG+TGG 0.364344 8.3:+28960746 None:intergenic
AGGTGGATTGGTTACTCCTA+TGG 0.365893 8.3:-28962292 MS.gene27219:CDS
GGGGATTAGGGTTACGGGAC+GGG 0.371488 8.3:+28962473 None:intergenic
ACTAGATTTCCATACAGGTT+TGG 0.377752 8.3:+28959477 None:intergenic
GGTCAGCAAATGCAGGAAAC+TGG 0.384422 8.3:+28958143 None:intergenic
TCCTGCATTTGCTGACCGTT+TGG 0.391960 8.3:-28958137 MS.gene27219:CDS
TCGAATTTCTCAAAGTAAAC+TGG 0.397465 8.3:+28962387 None:intergenic
GAATGGTTCGGATTGGGATC+GGG 0.408930 8.3:+28962548 None:intergenic
TACTGCATCGACAACTTCTT+GGG 0.411456 8.3:+28958045 None:intergenic
GGGTTGAGAGGAGGTGTTTG+AGG 0.411998 8.3:+28962568 None:intergenic
TGAGAGGAGGTGTTTGAGGA+GGG 0.412665 8.3:+28962572 None:intergenic
GTCGCCGGGGATTAGGGTTA+CGG 0.426544 8.3:+28962467 None:intergenic
TAAGACAAACCTTATTCTTA+CGG 0.426710 8.3:+28962316 None:intergenic
TGAATGGTTCGGATTGGGAT+CGG 0.435193 8.3:+28962547 None:intergenic
TTGCAACTAGATTTCCATAC+AGG 0.437374 8.3:+28959472 None:intergenic
GGGATCGGCCCACTCGTAAC+CGG 0.440880 8.3:-28962444 MS.gene27219:CDS
CGGTGTCGTCGAAAGTCTTA+AGG 0.445057 8.3:-28962094 MS.gene27219:intron
GAGGTGTTTGAGGAGGGGTA+TGG 0.448718 8.3:+28962578 None:intergenic
GGATTAGGGTTACGGGACGG+GGG 0.451332 8.3:+28962475 None:intergenic
TTGAGAGGAGGTGTTTGAGG+AGG 0.452501 8.3:+28962571 None:intergenic
ATGGATCTTCTTGTTGCCAT+TGG 0.453390 8.3:+28962597 None:intergenic
CGGCGCCGTTGAGCAACTAA+TGG 0.458955 8.3:-28962424 MS.gene27219:CDS
TTTGAGCAGGGTGCTTCAGC+AGG 0.462492 8.3:-28958253 MS.gene27219:CDS
AGTGGGCCGATCCCGTCGCC+GGG 0.472280 8.3:+28962453 None:intergenic
TCGCCGGGGATTAGGGTTAC+GGG 0.472697 8.3:+28962468 None:intergenic
GATGGTGAATGGTTCGGATT+GGG 0.474079 8.3:+28962542 None:intergenic
GAGTGGGCCGATCCCGTCGC+CGG 0.474941 8.3:+28962452 None:intergenic
TGAGCATGCTGTGTTTGAGC+AGG 0.476481 8.3:-28958266 MS.gene27219:CDS
TTAAGACTTTCGACGACACC+GGG 0.476912 8.3:+28962096 None:intergenic
TCTCATCAGCTATGATGCTT+AGG 0.477441 8.3:-28958171 MS.gene27219:CDS
CTAGTTGCAAATACTGCAGC+TGG 0.478154 8.3:-28959459 MS.gene27219:CDS
GATGAGAGAAGAAGCGCCAC+TGG 0.479561 8.3:+28958187 None:intergenic
AGATGGTGAATGGTTCGGAT+TGG 0.479659 8.3:+28962541 None:intergenic
TTTAATTCCAGGATACTTTG+TGG 0.480739 8.3:+28960684 None:intergenic
GGAGGCACTGGAGTCATGCC+AGG 0.483629 8.3:-28959429 MS.gene27219:CDS
AATAAGGTTTGTCTTAAAGG+TGG 0.484570 8.3:-28962309 MS.gene27219:CDS
GGTTTGTCTTAAAGGTGGAT+TGG 0.488656 8.3:-28962304 MS.gene27219:CDS
TAACCCTAATCCCCGGCGAC+GGG 0.492476 8.3:-28962464 MS.gene27219:CDS
CTTAAGACTTTCGACGACAC+CGG 0.493025 8.3:+28962095 None:intergenic
TCCAAACGGTCAGCAAATGC+AGG 0.494673 8.3:+28958136 None:intergenic
CATTAGTTGCTCAACGGCGC+CGG 0.494753 8.3:+28962425 None:intergenic
GATTAGGGTTACGGGACGGG+GGG 0.495755 8.3:+28962476 None:intergenic
TTTGAGAAATTCGACGTACA+TGG 0.504755 8.3:-28962378 MS.gene27219:CDS
GCCCGAGCAGTTTGATGTCA+TGG 0.512416 8.3:-28960614 MS.gene27219:intron
CTAATCCCCGGCGACGGGAT+CGG 0.517163 8.3:-28962459 MS.gene27219:CDS
TACCATGACATCAAACTGCT+CGG 0.517965 8.3:+28960612 None:intergenic
TAAATACAACGAAATTATTG+TGG 0.523864 8.3:-28960665 MS.gene27219:CDS
GAAGTTGCCACAAAGTATCC+TGG 0.527999 8.3:-28960691 MS.gene27219:CDS
TTGGTTACTCCTATGGGTGG+TGG 0.528515 8.3:-28962285 MS.gene27219:CDS
GGTGGATTGGTTACTCCTAT+GGG 0.530483 8.3:-28962291 MS.gene27219:CDS
TAGGTTACCCCAAACCTGTA+TGG 0.532200 8.3:-28959486 MS.gene27219:CDS
GAGAGGAGGTGTTTGAGGAG+GGG 0.532450 8.3:+28962573 None:intergenic
CGCTTCCATTAGTTGCTCAA+CGG 0.535249 8.3:+28962419 None:intergenic
TACATGCACCGTCCCGGCGA+CGG 0.545739 8.3:-28962501 MS.gene27219:CDS
AATACTGAAGGGGAGTATGC+TGG 0.554823 8.3:-28962138 MS.gene27219:CDS
CGGGGATTAGGGTTACGGGA+CGG 0.556243 8.3:+28962472 None:intergenic
GGTGCTTCAGCAGGAAATGT+TGG 0.556712 8.3:-28958244 MS.gene27219:CDS
AAGTATCGGACAAAGGATCT+TGG 0.558261 8.3:-28958082 MS.gene27219:CDS
GTTATTAGGGAGAATACTGA+AGG 0.561297 8.3:-28962150 MS.gene27219:CDS
AATATAATGAAGCTTGCAGA+TGG 0.561935 8.3:-28960736 MS.gene27219:CDS
ACCATGACATCAAACTGCTC+GGG 0.568329 8.3:+28960613 None:intergenic
TGCATCGACAACTTCTTGGG+TGG 0.570042 8.3:+28958048 None:intergenic
GTAACCCTAATCCCCGGCGA+CGG 0.570101 8.3:-28962465 MS.gene27219:CDS
GAGCATGCTGTGTTTGAGCA+GGG 0.577817 8.3:-28958265 MS.gene27219:CDS
TCAACGGCGCCGGTTACGAG+TGG 0.578394 8.3:+28962435 None:intergenic
TTATTAGGGAGAATACTGAA+GGG 0.584736 8.3:-28962149 MS.gene27219:CDS
ATTGGGATCGGGTTGAGAGG+AGG 0.584800 8.3:+28962559 None:intergenic
GTAACCTACATGCACCGTCC+CGG 0.585438 8.3:-28962507 MS.gene27219:CDS
CGGATTGGGATCGGGTTGAG+AGG 0.596796 8.3:+28962556 None:intergenic
TATCGGACAAAGGATCTTGG+AGG 0.597549 8.3:-28958079 MS.gene27219:CDS
CAACGGCGCCGGTTACGAGT+GGG 0.604840 8.3:+28962436 None:intergenic
TCATTCTAGAGGGCAAGTAT+CGG 0.606553 8.3:-28958096 MS.gene27219:CDS
ATGAGAGAAGAAGCGCCACT+GGG 0.614739 8.3:+28958188 None:intergenic
GTTCGCTTAATGTTCAGTTG+AGG 0.618363 8.3:-28962257 MS.gene27219:CDS
TATTAGGGAGAATACTGAAG+GGG 0.622910 8.3:-28962148 MS.gene27219:CDS
TAGATTTCCATACAGGTTTG+GGG 0.624475 8.3:+28959479 None:intergenic
TCAACGTTATCATGTCGAGT+AGG 0.631397 8.3:+28962180 None:intergenic
ACTGCAGCTGGCATTGCTGG+AGG 0.631533 8.3:-28959447 MS.gene27219:CDS
TCATGTCGAGTAGGTAACCC+AGG 0.633861 8.3:+28962189 None:intergenic
GAACTAACACCACCACCCAT+AGG 0.634743 8.3:+28962276 None:intergenic
GTATGCTGGTCTTGAACATG+AGG 0.635401 8.3:-28962124 MS.gene27219:CDS
GTCGCCGGGACGGTGCATGT+AGG 0.635610 8.3:+28962503 None:intergenic
CGTCCCGTAACCCTAATCCC+CGG 0.639953 8.3:-28962471 MS.gene27219:CDS
ATCGGACAAAGGATCTTGGA+GGG 0.644506 8.3:-28958078 MS.gene27219:CDS
GGATTGGTTACTCCTATGGG+TGG 0.645378 8.3:-28962288 MS.gene27219:CDS
TGACATGAAAGCTGTACCTA+CGG 0.647259 8.3:-28962355 MS.gene27219:CDS
AGAGGGCAAGTATCGGACAA+AGG 0.667139 8.3:-28958089 MS.gene27219:CDS
GTGGGCCGATCCCGTCGCCG+GGG 0.685533 8.3:+28962454 None:intergenic
TGTTGGTAATGAGAAAGTAG+CGG 0.689933 8.3:-28958227 MS.gene27219:CDS
GGCACTGGAGTCATGCCAGG+AGG 0.693153 8.3:-28959426 MS.gene27219:intron
ATCGATTCAAGAACTTCCGT+AGG 0.726256 8.3:+28962339 None:intergenic
ACAAAAGACAGCTAACCCAG+TGG 0.753214 8.3:-28958203 MS.gene27219:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAAATCATTAAATTCT+TGG - chr8.3:28958725-28958744 MS.gene27219:intron 10.0%
!! ACTGTAAATTAAAATTTAAA+TGG + chr8.3:28961753-28961772 None:intergenic 10.0%
!! ATACAAATATTTGAAAAATA+AGG - chr8.3:28959633-28959652 MS.gene27219:intron 10.0%
!! CTGTAAATTAAAATTTAAAT+GGG + chr8.3:28961752-28961771 None:intergenic 10.0%
!!! CCTTTATTTAATTTTTTTTA+GGG + chr8.3:28962084-28962103 None:intergenic 10.0%
!!! TAAACAAAGTTAAATATTTT+TGG + chr8.3:28962007-28962026 None:intergenic 10.0%
!!! TCCTTTATTTAATTTTTTTT+AGG + chr8.3:28962085-28962104 None:intergenic 10.0%
!! AAAAAATTAAATAAAGGACT+AGG - chr8.3:28962087-28962106 MS.gene27219:intron 15.0%
!! ACTTAATAATAAGAGAAATA+AGG - chr8.3:28961883-28961902 MS.gene27219:intron 15.0%
!! CCCTAAAAAAAATTAAATAA+AGG - chr8.3:28962081-28962100 MS.gene27219:intron 15.0%
!! TTAATATTCATTACTATACA+TGG + chr8.3:28958928-28958947 None:intergenic 15.0%
!! TTACATTTATTTCAATATGT+CGG - chr8.3:28961915-28961934 MS.gene27219:intron 15.0%
!!! GGGTTAATTTTTTTATAAAT+TGG + chr8.3:28960857-28960876 None:intergenic 15.0%
!!! TGTTTTTAAAAATGAATAAG+TGG + chr8.3:28960824-28960843 None:intergenic 15.0%
!! AATTTCATAAATGATCTTGT+AGG - chr8.3:28958953-28958972 MS.gene27219:intron 20.0%
!! AGGGAAAGAAAATATTTAAA+AGG + chr8.3:28961277-28961296 None:intergenic 20.0%
!! ATAAGAACCAATATAATTTG+TGG + chr8.3:28959679-28959698 None:intergenic 20.0%
!! ATTTCATAAATGATCTTGTA+GGG - chr8.3:28958954-28958973 MS.gene27219:intron 20.0%
!! CCACAACAAAAAAAAATATT+AGG + chr8.3:28961950-28961969 None:intergenic 20.0%
!! TAAATACAACGAAATTATTG+TGG - chr8.3:28959956-28959975 MS.gene27219:intron 20.0%
!!! ATTTCTTTGTTTTTTGATTG+AGG - chr8.3:28958567-28958586 MS.gene27219:intron 20.0%
!!! ATTTTTCCTTTCTTTTCTAT+TGG - chr8.3:28960966-28960985 MS.gene27219:intron 20.0%
!!! CCTAATATTTTTTTTTGTTG+TGG - chr8.3:28961947-28961966 MS.gene27219:intron 20.0%
!!! TAAGAACCAATATAATTTGT+GGG + chr8.3:28959678-28959697 None:intergenic 20.0%
!!! TAGTTTATTTCTTAATTGTG+TGG - chr8.3:28958979-28958998 MS.gene27219:intron 20.0%
!!! TTAATTGTTTTAATCTTCCT+GGG - chr8.3:28958415-28958434 MS.gene27219:intron 20.0%
! AAGAATAAGGTTTGTCTTAA+AGG - chr8.3:28958309-28958328 MS.gene27219:intron 25.0%
! AATATGCCAAAAATTCATGA+AGG - chr8.3:28961783-28961802 MS.gene27219:intron 25.0%
! AATTGTGTGGTTTCTTAAAA+AGG - chr8.3:28958992-28959011 MS.gene27219:intron 25.0%
! ACGTTGATATTGTAGTTATT+AGG - chr8.3:28958457-28958476 MS.gene27219:intron 25.0%
! ACTTATTTCCATTCCTAAAT+GGG - chr8.3:28962135-28962154 MS.gene27219:CDS 25.0%
! ATACTGAAGTCATTAATTGT+CGG + chr8.3:28960136-28960155 None:intergenic 25.0%
! ATTTCGTTGTATTTAATTCC+AGG + chr8.3:28959951-28959970 None:intergenic 25.0%
! CAACTTAAATTAACCTTGAA+TGG - chr8.3:28959287-28959306 MS.gene27219:intron 25.0%
! CATCATAGATTAAAGAAAAG+TGG + chr8.3:28960047-28960066 None:intergenic 25.0%
! CATTCAAGGTTAATTTAAGT+TGG + chr8.3:28959289-28959308 None:intergenic 25.0%
! CATTGGAAACTAATTTGAAA+TGG - chr8.3:28959491-28959510 MS.gene27219:intron 25.0%
! CGTTGATATTGTAGTTATTA+GGG - chr8.3:28958458-28958477 MS.gene27219:intron 25.0%
! CTGTTAGACTATTTAAAGAT+AGG + chr8.3:28961527-28961546 None:intergenic 25.0%
! GAAAATAGATGTATTACAGA+AGG - chr8.3:28959180-28959199 MS.gene27219:intron 25.0%
! TAAAAATGAATAAGTGGCTT+TGG + chr8.3:28960818-28960837 None:intergenic 25.0%
! TAACTCTATTAACTCATTTC+AGG + chr8.3:28958800-28958819 None:intergenic 25.0%
! TAAGACAAACCTTATTCTTA+CGG + chr8.3:28958308-28958327 None:intergenic 25.0%
! TCTTATAGTTCTTAACTTTC+AGG + chr8.3:28960325-28960344 None:intergenic 25.0%
!! ACAACATCAATTTAAAACCT+TGG - chr8.3:28959453-28959472 MS.gene27219:CDS 25.0%
!! CACTTTTCTTTAATCTATGA+TGG - chr8.3:28960045-28960064 MS.gene27219:intron 25.0%
!! GTCTTATCTATATTTCTACT+TGG + chr8.3:28958778-28958797 None:intergenic 25.0%
!! TTTTAATCCAAATATTACCC+TGG + chr8.3:28959525-28959544 None:intergenic 25.0%
!!! AACAAAAAAAGTACTGAATC+TGG + chr8.3:28959561-28959580 None:intergenic 25.0%
!!! CACAATTTGTTTCTGATTTT+TGG - chr8.3:28961066-28961085 MS.gene27219:intron 25.0%
!!! GTTAATTGTTTTAATCTTCC+TGG - chr8.3:28958414-28958433 MS.gene27219:intron 25.0%
!!! GTTTGCATAAATCTTTTTTG+AGG - chr8.3:28961686-28961705 MS.gene27219:intron 25.0%
!!! TAAAGAAGTTGATATGAACT+CGG + chr8.3:28961490-28961509 None:intergenic 25.0%
!!! TATATGAAATATGATGATGG+TGG - chr8.3:28962177-28962196 MS.gene27219:CDS 25.0%
!!! TATTGGTTCTTATTTTCCAT+TGG - chr8.3:28959686-28959705 MS.gene27219:intron 25.0%
!!! TTTAAATGGGTTATCATGTA+AGG + chr8.3:28961739-28961758 None:intergenic 25.0%
!!! TTTGACTTGATATTTTTGGT+AGG - chr8.3:28959767-28959786 MS.gene27219:intron 25.0%
AAATTCCAGACATACCTTAA+AGG + chr8.3:28960702-28960721 None:intergenic 30.0%
AACCTAGATAGATATTCCAA+TGG + chr8.3:28959705-28959724 None:intergenic 30.0%
AACCTTCCCACAAATTATAT+TGG - chr8.3:28959669-28959688 MS.gene27219:intron 30.0%
AATAAGGTTTGTCTTAAAGG+TGG - chr8.3:28958312-28958331 MS.gene27219:intron 30.0%
AATATAATGAAGCTTGCAGA+TGG - chr8.3:28959885-28959904 MS.gene27219:intron 30.0%
ATAATCAGATCAAAGCTCTA+AGG + chr8.3:28961250-28961269 None:intergenic 30.0%
ATACAGAGATAGAAATAGAC+GGG - chr8.3:28961625-28961644 MS.gene27219:intron 30.0%
ATCAACTTAGAAATGAGTCA+AGG - chr8.3:28960154-28960173 MS.gene27219:intron 30.0%
ATCTATCTACACATGAACAA+GGG + chr8.3:28960634-28960653 None:intergenic 30.0%
ATTACCTGCAAAAAAAGACA+TGG + chr8.3:28962327-28962346 None:intergenic 30.0%
ATTTGGATGTAGAAGTTTAG+AGG - chr8.3:28960718-28960737 MS.gene27219:CDS 30.0%
CTAACAGACTAATATGCAAT+GGG - chr8.3:28961540-28961559 MS.gene27219:intron 30.0%
CTTAGACCAATAGAAAAGAA+AGG + chr8.3:28960975-28960994 None:intergenic 30.0%
CTTATTTCCATTCCTAAATG+GGG - chr8.3:28962136-28962155 MS.gene27219:CDS 30.0%
GACTTATTTCCATTCCTAAA+TGG - chr8.3:28962134-28962153 MS.gene27219:CDS 30.0%
GATACAGAGATAGAAATAGA+CGG - chr8.3:28961624-28961643 MS.gene27219:intron 30.0%
GCTTCATTATATTTGCTTTG+TGG + chr8.3:28959878-28959897 None:intergenic 30.0%
GGCTATATGAAATATGATGA+TGG - chr8.3:28962174-28962193 MS.gene27219:CDS 30.0%
GGTTCTTAAGTATTCAACAT+TGG - chr8.3:28959474-28959493 MS.gene27219:CDS 30.0%
GTACTTTGTGGAATATTGAA+GGG - chr8.3:28960935-28960954 MS.gene27219:intron 30.0%
GTTGAAAAAGTCATTCTAGA+GGG - chr8.3:28962515-28962534 MS.gene27219:CDS 30.0%
TAACAATTACCAGATGCTAT+CGG + chr8.3:28960418-28960437 None:intergenic 30.0%
TACTTTGTGGAATATTGAAG+GGG - chr8.3:28960936-28960955 MS.gene27219:intron 30.0%
TATACAAGTATGTCCTGAAA+CGG + chr8.3:28959616-28959635 None:intergenic 30.0%
TATAGAGAGTAGATAAGACT+CGG + chr8.3:28960497-28960516 None:intergenic 30.0%
TATCTATCTACACATGAACA+AGG + chr8.3:28960635-28960654 None:intergenic 30.0%
TCAAGCACAAACAAAAAAGA+TGG + chr8.3:28960093-28960112 None:intergenic 30.0%
TCCTTTCTTTCTGTTTGAAA+AGG - chr8.3:28960758-28960777 MS.gene27219:CDS 30.0%
TCGAATTTCTCAAAGTAAAC+TGG + chr8.3:28958237-28958256 None:intergenic 30.0%
TCTAACAGACTAATATGCAA+TGG - chr8.3:28961539-28961558 MS.gene27219:intron 30.0%
TCTGATAACATGGTAAAAGA+GGG + chr8.3:28961296-28961315 None:intergenic 30.0%
TGAAAAACCTATAGCAAAAC+AGG + chr8.3:28960234-28960253 None:intergenic 30.0%
TGTACTTTGTGGAATATTGA+AGG - chr8.3:28960934-28960953 MS.gene27219:intron 30.0%
TGTTGAAAAAGTCATTCTAG+AGG - chr8.3:28962514-28962533 MS.gene27219:CDS 30.0%
TGTTGAATACTTAAGAACCA+AGG + chr8.3:28959473-28959492 None:intergenic 30.0%
TGTTGATCCATGTCATAAAA+GGG + chr8.3:28960576-28960595 None:intergenic 30.0%
TTAGATACGTATGTTTGCAA+GGG - chr8.3:28958898-28958917 MS.gene27219:intron 30.0%
TTATTAGGGAGAATACTGAA+GGG - chr8.3:28958472-28958491 MS.gene27219:intron 30.0%
TTATTTCCATTCCTAAATGG+GGG - chr8.3:28962137-28962156 MS.gene27219:CDS 30.0%
TTCCATTGGAATATCTATCT+AGG - chr8.3:28959700-28959719 MS.gene27219:intron 30.0%
TTGTTGATCCATGTCATAAA+AGG + chr8.3:28960577-28960596 None:intergenic 30.0%
TTTAATTCCAGGATACTTTG+TGG + chr8.3:28959940-28959959 None:intergenic 30.0%
TTTAGATACGTATGTTTGCA+AGG - chr8.3:28958897-28958916 MS.gene27219:intron 30.0%
TTTAGGAATGGAAATAAGTC+AGG + chr8.3:28962134-28962153 None:intergenic 30.0%
TTTGATTGAGGAGAAAAACA+TGG - chr8.3:28958579-28958598 MS.gene27219:intron 30.0%
TTTGGATGTAGAAGTTTAGA+GGG - chr8.3:28960719-28960738 MS.gene27219:CDS 30.0%
TTTGTTGGATGGATAAGTTA+GGG + chr8.3:28960895-28960914 None:intergenic 30.0%
! AACCAATATAATTTGTGGGA+AGG + chr8.3:28959674-28959693 None:intergenic 30.0%
! ACTAATTTGAAATGGTGTCA+AGG - chr8.3:28959499-28959518 MS.gene27219:intron 30.0%
! CTACTACCTTCATGAATTTT+TGG + chr8.3:28961792-28961811 None:intergenic 30.0%
! TCCTTTTCAAACAGAAAGAA+AGG + chr8.3:28960762-28960781 None:intergenic 30.0%
! TTTAAGGTATGTCTGGAATT+TGG - chr8.3:28960701-28960720 MS.gene27219:CDS 30.0%
! TTTTATGACATGGATCAACA+AGG - chr8.3:28960576-28960595 MS.gene27219:intron 30.0%
!! AATTTAAGTTGGAACCTAAG+AGG + chr8.3:28959278-28959297 None:intergenic 30.0%
!!! AATTTTTTTTAGGGTGCCTA+TGG + chr8.3:28962075-28962094 None:intergenic 30.0%
!!! GTTGTTGTTGCTTTTTGATT+TGG - chr8.3:28958661-28958680 MS.gene27219:intron 30.0%
!!! TCTTTTTTTGCAGGTAATGT+TGG - chr8.3:28962329-28962348 MS.gene27219:CDS 30.0%
AAAGAAAAACAAGAGCTGTG+TGG - chr8.3:28960190-28960209 MS.gene27219:intron 35.0%
ACTAGATTTCCATACAGGTT+TGG + chr8.3:28961147-28961166 None:intergenic 35.0%
ATAGTCTTCAACGACCTTTA+AGG - chr8.3:28960685-28960704 MS.gene27219:CDS 35.0%
ATCAACAAGGTTTGAATGTC+TGG - chr8.3:28960589-28960608 MS.gene27219:intron 35.0%
ATTTCACTAATCAGCACGTT+TGG - chr8.3:28959384-28959403 MS.gene27219:intron 35.0%
CAGAAACAAATTGTGAAGAC+CGG + chr8.3:28961061-28961080 None:intergenic 35.0%
CTAGATTTCCATACAGGTTT+GGG + chr8.3:28961146-28961165 None:intergenic 35.0%
CTCTAAGTAGACTAACAAAG+AGG + chr8.3:28961466-28961485 None:intergenic 35.0%
GAAAGGCTAAGAAAAACTGT+TGG + chr8.3:28960452-28960471 None:intergenic 35.0%
GCATCTGGTAATTGTTAACA+TGG - chr8.3:28960421-28960440 MS.gene27219:intron 35.0%
GGGTTTGATCTTAACTTACA+AGG + chr8.3:28960556-28960575 None:intergenic 35.0%
GGTTTGTGTTTGTGATTATC+AGG + chr8.3:28962306-28962325 None:intergenic 35.0%
GTCTGATAACATGGTAAAAG+AGG + chr8.3:28961297-28961316 None:intergenic 35.0%
GTTATTAGGGAGAATACTGA+AGG - chr8.3:28958471-28958490 MS.gene27219:intron 35.0%
GTTGTATCTCACATCAATGA+CGG - chr8.3:28959426-28959445 MS.gene27219:intron 35.0%
TAAATAAAGGACTAGGCCAT+AGG - chr8.3:28962094-28962113 MS.gene27219:intron 35.0%
TAAGCAAGAATCATTGCTGT+GGG - chr8.3:28960991-28961010 MS.gene27219:intron 35.0%
TAGATTTCCATACAGGTTTG+GGG + chr8.3:28961145-28961164 None:intergenic 35.0%
TATTAGGGAGAATACTGAAG+GGG - chr8.3:28958473-28958492 MS.gene27219:intron 35.0%
TATTATGTTCCGATAGCATC+TGG - chr8.3:28960406-28960425 MS.gene27219:intron 35.0%
TATTCACACGTCTGATAACA+TGG + chr8.3:28961306-28961325 None:intergenic 35.0%
TCAACAAGGTTTGAATGTCT+GGG - chr8.3:28960590-28960609 MS.gene27219:intron 35.0%
TCTTTCTGTTTGAAAAGGAG+AGG - chr8.3:28960763-28960782 MS.gene27219:CDS 35.0%
TGAATCGATCCGTAAGAATA+AGG - chr8.3:28958296-28958315 MS.gene27219:intron 35.0%
TTGCAACTAGATTTCCATAC+AGG + chr8.3:28961152-28961171 None:intergenic 35.0%
TTGTTGGATGGATAAGTTAG+GGG + chr8.3:28960894-28960913 None:intergenic 35.0%
TTTCTCTTTCCAAACCTCTT+AGG - chr8.3:28959261-28959280 MS.gene27219:intron 35.0%
TTTGAGAAATTCGACGTACA+TGG - chr8.3:28958243-28958262 MS.gene27219:CDS 35.0%
! AGACTAATATGCAATGGGTT+AGG - chr8.3:28961545-28961564 MS.gene27219:intron 35.0%
! GATCAAACCCTTTTATGACA+TGG - chr8.3:28960566-28960585 MS.gene27219:intron 35.0%
! GATGTGAGATACAACGTTTT+GGG + chr8.3:28959421-28959440 None:intergenic 35.0%
! GCTTTTCTAGATGATTGTTC+TGG - chr8.3:28961365-28961384 MS.gene27219:intron 35.0%
! GTTTGTTGGATGGATAAGTT+AGG + chr8.3:28960896-28960915 None:intergenic 35.0%
! TGATGTGAGATACAACGTTT+TGG + chr8.3:28959422-28959441 None:intergenic 35.0%
! TGTTGTACTGATGCAGTATT+GGG - chr8.3:28959732-28959751 MS.gene27219:intron 35.0%
! TTGTTGTACTGATGCAGTAT+TGG - chr8.3:28959731-28959750 MS.gene27219:intron 35.0%
! TTTCAACAGCGTTTTCCAAA+CGG + chr8.3:28962502-28962521 None:intergenic 35.0%
!! AAACGTGCTGATTAGTGAAA+TGG + chr8.3:28959385-28959404 None:intergenic 35.0%
!! ATGAAATATGATGATGGTGG+TGG - chr8.3:28962180-28962199 MS.gene27219:CDS 35.0%
!! CATGATTCCTGTTTTGCTAT+AGG - chr8.3:28960224-28960243 MS.gene27219:intron 35.0%
!! TGTTGGTAATGAGAAAGTAG+CGG - chr8.3:28962394-28962413 MS.gene27219:CDS 35.0%
!!! CAAACCATGTCTTTTTTTGC+AGG - chr8.3:28962320-28962339 MS.gene27219:CDS 35.0%
!!! GCGGTTTGACTTGATATTTT+TGG - chr8.3:28959763-28959782 MS.gene27219:intron 35.0%
!!! TTTTGAGATGGTGAATGGTT+CGG + chr8.3:28958088-28958107 None:intergenic 35.0%
AAAGTACATCTACATCCTCC+AGG + chr8.3:28960922-28960941 None:intergenic 40.0%
AACTTTCAGGACAATGTGCT+TGG + chr8.3:28960312-28960331 None:intergenic 40.0%
AAGTACATCTACATCCTCCA+GGG + chr8.3:28960921-28960940 None:intergenic 40.0%
AAGTTGGAACCTAAGAGGTT+TGG + chr8.3:28959273-28959292 None:intergenic 40.0%
ACTAATCAGCACGTTTGGTT+GGG - chr8.3:28959389-28959408 MS.gene27219:intron 40.0%
ACTTTCAGGACAATGTGCTT+GGG + chr8.3:28960311-28960330 None:intergenic 40.0%
AGAAGTTTAGAGGGAAGGTA+GGG - chr8.3:28960728-28960747 MS.gene27219:CDS 40.0%
ATGGATAAGTTAGGGGAGAA+AGG + chr8.3:28960887-28960906 None:intergenic 40.0%
CAATATGAGCCACAACATCA+CGG - chr8.3:28959025-28959044 MS.gene27219:intron 40.0%
CAATCAAAGGTTGGCAACAT+GGG - chr8.3:28960263-28960282 MS.gene27219:intron 40.0%
CCAACCTTTGATTGAACCAA+CGG + chr8.3:28960257-28960276 None:intergenic 40.0%
CTAAGCAAGAATCATTGCTG+TGG - chr8.3:28960990-28961009 MS.gene27219:intron 40.0%
CTAATACCCCCATTTAGGAA+TGG + chr8.3:28962146-28962165 None:intergenic 40.0%
GAAACGTACATGTAAGGAGA+AGG + chr8.3:28959328-28959347 None:intergenic 40.0%
GACAAAACCATCAAGACCTA+AGG + chr8.3:28961028-28961047 None:intergenic 40.0%
GAGGAAGAAACGTACATGTA+AGG + chr8.3:28959334-28959353 None:intergenic 40.0%
GAGGATGTAGATGTACTTTG+TGG - chr8.3:28960923-28960942 MS.gene27219:intron 40.0%
GAGGTCTCATATGATCAAAG+AGG + chr8.3:28961447-28961466 None:intergenic 40.0%
GATGTAGAAGTTTAGAGGGA+AGG - chr8.3:28960723-28960742 MS.gene27219:CDS 40.0%
GGCTAAGAAAAACTGTTGGT+TGG + chr8.3:28960448-28960467 None:intergenic 40.0%
GGTTTGTCTTAAAGGTGGAT+TGG - chr8.3:28958317-28958336 MS.gene27219:intron 40.0%
GTTCGCTTAATGTTCAGTTG+AGG - chr8.3:28958364-28958383 MS.gene27219:intron 40.0%
TACCATGACATCAAACTGCT+CGG + chr8.3:28960012-28960031 None:intergenic 40.0%
TAGAAGTTTAGAGGGAAGGT+AGG - chr8.3:28960727-28960746 MS.gene27219:CDS 40.0%
TCAACGTTATCATGTCGAGT+AGG + chr8.3:28958444-28958463 None:intergenic 40.0%
TCAATCAAAGGTTGGCAACA+TGG - chr8.3:28960262-28960281 MS.gene27219:intron 40.0%
TCACTTGCTTTCTGTTGTTC+AGG + chr8.3:28959848-28959867 None:intergenic 40.0%
TCATCAACCTTAGGTCTTGA+TGG - chr8.3:28961018-28961037 MS.gene27219:intron 40.0%
TCTCATCAGCTATGATGCTT+AGG - chr8.3:28962450-28962469 MS.gene27219:CDS 40.0%
TGACATGAAAGCTGTACCTA+CGG - chr8.3:28958266-28958285 MS.gene27219:CDS 40.0%
TGGATAAGTTAGGGGAGAAA+GGG + chr8.3:28960886-28960905 None:intergenic 40.0%
TTACAATTGCATATGCAGCC+AGG + chr8.3:28959362-28959381 None:intergenic 40.0%
! ATCATGTCTCTCAGAAGTAC+TGG + chr8.3:28961607-28961626 None:intergenic 40.0%
! ATCGATTCAAGAACTTCCGT+AGG + chr8.3:28958285-28958304 None:intergenic 40.0%
! GCATACTTTTACCTTGTGCT+AGG - chr8.3:28961116-28961135 MS.gene27219:intron 40.0%
! TACTGCATCGACAACTTCTT+GGG + chr8.3:28962579-28962598 None:intergenic 40.0%
! TCATTCTAGAGGGCAAGTAT+CGG - chr8.3:28962525-28962544 MS.gene27219:CDS 40.0%
! TGCTATAGGTTTTTCACCGT+TGG - chr8.3:28960238-28960257 MS.gene27219:intron 40.0%
! TTACTGCATCGACAACTTCT+TGG + chr8.3:28962580-28962599 None:intergenic 40.0%
! TTGATGGCTTTCGATCTTGT+AGG - chr8.3:28959136-28959155 MS.gene27219:intron 40.0%
!! AACGACCTTTAAGGTATGTC+TGG - chr8.3:28960694-28960713 MS.gene27219:CDS 40.0%
!! AAGTATCGGACAAAGGATCT+TGG - chr8.3:28962539-28962558 MS.gene27219:CDS 40.0%
!! ACGTTTCTTCCTCTAAAACC+TGG - chr8.3:28959341-28959360 MS.gene27219:intron 40.0%
!! GGTTTTGTCTTGCAACTTAC+CGG - chr8.3:28961039-28961058 MS.gene27219:intron 40.0%
!! TGAAAGTACTCTTGGTAGGT+TGG - chr8.3:28962203-28962222 MS.gene27219:CDS 40.0%
!! TTCACCGTTGGTTCAATCAA+AGG - chr8.3:28960250-28960269 MS.gene27219:intron 40.0%
!! TTCCTAAATGGGGGTATTAG+TGG - chr8.3:28962146-28962165 MS.gene27219:CDS 40.0%
!! TTGTTGGGTTTAGGGCTTTT+GGG - chr8.3:28962232-28962251 MS.gene27219:CDS 40.0%
!!! CATCGTTTTGAGATGGTGAA+TGG + chr8.3:28958093-28958112 None:intergenic 40.0%
ACAAAAGACAGCTAACCCAG+TGG - chr8.3:28962418-28962437 MS.gene27219:CDS 45.0%
ACCATGACATCAAACTGCTC+GGG + chr8.3:28960011-28960030 None:intergenic 45.0%
AGCATGTGTGAAGGAGAATG+TGG + chr8.3:28960529-28960548 None:intergenic 45.0%
AGCCACTAATACCCCCATTT+AGG + chr8.3:28962151-28962170 None:intergenic 45.0%
AGGTTGGCAACATGGGAAAA+AGG - chr8.3:28960270-28960289 MS.gene27219:intron 45.0%
ATCCATCCAACAAACAACCC+TGG - chr8.3:28960901-28960920 MS.gene27219:intron 45.0%
ATCGGACAAAGGATCTTGGA+GGG - chr8.3:28962543-28962562 MS.gene27219:CDS 45.0%
CAAGAATCATTGCTGTGGGT+TGG - chr8.3:28960995-28961014 MS.gene27219:intron 45.0%
CAAGGTTTGAGCATGTGTGA+AGG + chr8.3:28960538-28960557 None:intergenic 45.0%
CAATCGCTAGAGGAAGAGAA+AGG + chr8.3:28960469-28960488 None:intergenic 45.0%
CACTAATCAGCACGTTTGGT+TGG - chr8.3:28959388-28959407 MS.gene27219:intron 45.0%
CATCAAAAGCCGTGATGTTG+TGG + chr8.3:28959037-28959056 None:intergenic 45.0%
CGCTTCCATTAGTTGCTCAA+CGG + chr8.3:28958205-28958224 None:intergenic 45.0%
CTAGTTGCAAATACTGCAGC+TGG - chr8.3:28961162-28961181 MS.gene27219:intron 45.0%
CTTAAGACTTTCGACGACAC+CGG + chr8.3:28958529-28958548 None:intergenic 45.0%
CTTGAACATGAGGTTGTTCC+CGG - chr8.3:28958507-28958526 MS.gene27219:intron 45.0%
GAAGTTTAGAGGGAAGGTAG+GGG - chr8.3:28960729-28960748 MS.gene27219:CDS 45.0%
GCTAAATAGCCAGTGCTTCA+TGG + chr8.3:28961973-28961992 None:intergenic 45.0%
GTACATGTAAGGAGAAGGCA+TGG + chr8.3:28959323-28959342 None:intergenic 45.0%
GTCAAGGCCAGGGTAATATT+TGG - chr8.3:28959515-28959534 MS.gene27219:intron 45.0%
TAGGTTACCCCAAACCTGTA+TGG - chr8.3:28961135-28961154 MS.gene27219:intron 45.0%
TATCGGACAAAGGATCTTGG+AGG - chr8.3:28962542-28962561 MS.gene27219:CDS 45.0%
TGACGAAAAACCATACCTCC+TGG + chr8.3:28961213-28961232 None:intergenic 45.0%
TTAAGACTTTCGACGACACC+GGG + chr8.3:28958528-28958547 None:intergenic 45.0%
! AAGTCTTATCCCACTAAGCG+GGG + chr8.3:28958637-28958656 None:intergenic 45.0%
! AATACTGAAGGGGAGTATGC+TGG - chr8.3:28958483-28958502 MS.gene27219:intron 45.0%
! AGATGGTGAATGGTTCGGAT+TGG + chr8.3:28958083-28958102 None:intergenic 45.0%
! CAAGTCTTATCCCACTAAGC+GGG + chr8.3:28958638-28958657 None:intergenic 45.0%
! CCAAGTCTTATCCCACTAAG+CGG + chr8.3:28958639-28958658 None:intergenic 45.0%
! CTAGTCTAGTTTGCCCAAGA+CGG + chr8.3:28962051-28962070 None:intergenic 45.0%
! GAAGTTGCCACAAAGTATCC+TGG - chr8.3:28959930-28959949 MS.gene27219:intron 45.0%
! GAGAGTAGATAAGACTCGGT+AGG + chr8.3:28960493-28960512 None:intergenic 45.0%
! GATGGTGAATGGTTCGGATT+GGG + chr8.3:28958082-28958101 None:intergenic 45.0%
! GCAGTATTGGGTTGTGTTTG+CGG - chr8.3:28959744-28959763 MS.gene27219:intron 45.0%
! TAGTCTAGTTTGCCCAAGAC+GGG + chr8.3:28962050-28962069 None:intergenic 45.0%
! TGAATGGTTCGGATTGGGAT+CGG + chr8.3:28958077-28958096 None:intergenic 45.0%
! TTGAAATGGTGTCAAGGCCA+GGG - chr8.3:28959505-28959524 MS.gene27219:intron 45.0%
! TTTGAAATGGTGTCAAGGCC+AGG - chr8.3:28959504-28959523 MS.gene27219:intron 45.0%
!! AGGTGGATTGGTTACTCCTA+TGG - chr8.3:28958329-28958348 MS.gene27219:intron 45.0%
!! CATATGCAGCCAGGTTTTAG+AGG + chr8.3:28959353-28959372 None:intergenic 45.0%
!! CCGTTGGTTCAATCAAAGGT+TGG - chr8.3:28960254-28960273 MS.gene27219:intron 45.0%
!! GCTTGCAGATGGTTTGTTCT+TGG - chr8.3:28959896-28959915 MS.gene27219:intron 45.0%
!! GGTGGATTGGTTACTCCTAT+GGG - chr8.3:28958330-28958349 MS.gene27219:intron 45.0%
!! GTATGCTGGTCTTGAACATG+AGG - chr8.3:28958497-28958516 MS.gene27219:intron 45.0%
!! GTGGTGAAAGTACTCTTGGT+AGG - chr8.3:28962199-28962218 MS.gene27219:CDS 45.0%
!! GTTGTTGGGTTTAGGGCTTT+TGG - chr8.3:28962231-28962250 MS.gene27219:CDS 45.0%
!!! GGTTACGCATCGTTTTGAGA+TGG + chr8.3:28958100-28958119 None:intergenic 45.0%
AAATGTCTGACCACCCGTCT+TGG - chr8.3:28962034-28962053 MS.gene27219:intron 50.0%
AATACTGCAGCTGGCATTGC+TGG - chr8.3:28961171-28961190 MS.gene27219:intron 50.0%
AATGAGTCAAGGCTGACAGC+AGG - chr8.3:28960165-28960184 MS.gene27219:intron 50.0%
AATGTCTGACCACCCGTCTT+GGG - chr8.3:28962035-28962054 MS.gene27219:intron 50.0%
CATCAAAAGCCTCTTCCCTC+AGG + chr8.3:28959122-28959141 None:intergenic 50.0%
CATCCAACAAACAACCCTGG+AGG - chr8.3:28960904-28960923 MS.gene27219:intron 50.0%
CATCCTCCAGGGTTGTTTGT+TGG + chr8.3:28960910-28960929 None:intergenic 50.0%
CCCAGAGCAAAAGCTCTTGA+GGG - chr8.3:28959224-28959243 MS.gene27219:intron 50.0%
CCCAGAGCAAATTCTCCTGA+GGG - chr8.3:28959104-28959123 MS.gene27219:intron 50.0%
CCGCTTAGTGGGATAAGACT+TGG - chr8.3:28958636-28958655 MS.gene27219:intron 50.0%
CGTCTTGGGCAAACTAGACT+AGG - chr8.3:28962049-28962068 MS.gene27219:intron 50.0%
GAACTAACACCACCACCCAT+AGG + chr8.3:28958348-28958367 None:intergenic 50.0%
GAGCATGCTGTGTTTGAGCA+GGG - chr8.3:28962356-28962375 MS.gene27219:CDS 50.0%
GAGCTGTAGTCTACCGTTTC+AGG - chr8.3:28959600-28959619 MS.gene27219:intron 50.0%
GCAAAAGCTCTTGAGGGAAG+AGG - chr8.3:28959230-28959249 MS.gene27219:intron 50.0%
GCAAATTCTCCTGAGGGAAG+AGG - chr8.3:28959110-28959129 MS.gene27219:intron 50.0%
GGAGCTGGTTGTTGGGTTTA+GGG - chr8.3:28962224-28962243 MS.gene27219:CDS 50.0%
GGCAAACTAGACTAGGCCAT+AGG - chr8.3:28962056-28962075 MS.gene27219:intron 50.0%
GGTCAGCAAATGCAGGAAAC+TGG + chr8.3:28962481-28962500 None:intergenic 50.0%
GGTGCTTCAGCAGGAAATGT+TGG - chr8.3:28962377-28962396 MS.gene27219:CDS 50.0%
TAGGGGAGAAAGGGACTGAA+GGG + chr8.3:28960877-28960896 None:intergenic 50.0%
TCATGTCGAGTAGGTAACCC+AGG + chr8.3:28958435-28958454 None:intergenic 50.0%
TCCAAACGGTCAGCAAATGC+AGG + chr8.3:28962488-28962507 None:intergenic 50.0%
TGAGCATGCTGTGTTTGAGC+AGG - chr8.3:28962355-28962374 MS.gene27219:CDS 50.0%
TGGAGCTGGTTGTTGGGTTT+AGG - chr8.3:28962223-28962242 MS.gene27219:CDS 50.0%
TTAGGGGAGAAAGGGACTGA+AGG + chr8.3:28960878-28960897 None:intergenic 50.0%
TTGGTTACTCCTATGGGTGG+TGG - chr8.3:28958336-28958355 MS.gene27219:intron 50.0%
TTGTTGTGGCCATGAAGCAC+TGG - chr8.3:28961961-28961980 MS.gene27219:intron 50.0%
! AAGGAGAAGGCATGGCAAGA+CGG + chr8.3:28959315-28959334 None:intergenic 50.0%
! CCCTCAAGAGCTTTTGCTCT+GGG + chr8.3:28959227-28959246 None:intergenic 50.0%
! CCCTCAGGAGAATTTGCTCT+GGG + chr8.3:28959107-28959126 None:intergenic 50.0%
! CCTCAAGAGCTTTTGCTCTG+GGG + chr8.3:28959226-28959245 None:intergenic 50.0%
! CCTCAGGAGAATTTGCTCTG+GGG + chr8.3:28959106-28959125 None:intergenic 50.0%
! CTCCAGGGTTGTTTGTTGGA+TGG + chr8.3:28960906-28960925 None:intergenic 50.0%
! CTGAGGGAAGAGGCTTTTGA+TGG - chr8.3:28959120-28959139 MS.gene27219:intron 50.0%
! GAATGGTTCGGATTGGGATC+GGG + chr8.3:28958076-28958095 None:intergenic 50.0%
! GTAGGTTGGAGCTGGTTGTT+GGG - chr8.3:28962217-28962236 MS.gene27219:CDS 50.0%
! GTTTGGGGTAACCTAGCACA+AGG + chr8.3:28961130-28961149 None:intergenic 50.0%
! TACTCTTGGTAGGTTGGAGC+TGG - chr8.3:28962209-28962228 MS.gene27219:CDS 50.0%
! TCCCTCAAGAGCTTTTGCTC+TGG + chr8.3:28959228-28959247 None:intergenic 50.0%
! TCCCTCAGGAGAATTTGCTC+TGG + chr8.3:28959108-28959127 None:intergenic 50.0%
! TCCTGCATTTGCTGACCGTT+TGG - chr8.3:28962484-28962503 MS.gene27219:CDS 50.0%
! TGCATCGACAACTTCTTGGG+TGG + chr8.3:28962576-28962595 None:intergenic 50.0%
!! AGAGGGCAAGTATCGGACAA+AGG - chr8.3:28962532-28962551 MS.gene27219:CDS 50.0%
!! ATGAGAGAAGAAGCGCCACT+GGG + chr8.3:28962436-28962455 None:intergenic 50.0%
!! ATGGGGGTATTAGTGGCTTG+TGG - chr8.3:28962153-28962172 MS.gene27219:CDS 50.0%
!! CGGTGTCGTCGAAAGTCTTA+AGG - chr8.3:28958527-28958546 MS.gene27219:intron 50.0%
!! GGATTGGTTACTCCTATGGG+TGG - chr8.3:28958333-28958352 MS.gene27219:intron 50.0%
!! GGTGGTGGTGAAAGTACTCT+TGG - chr8.3:28962195-28962214 MS.gene27219:CDS 50.0%
!! GTGGGTTGGTCATCAACCTT+AGG - chr8.3:28961009-28961028 MS.gene27219:intron 50.0%
!! TGAGAGGAGGTGTTTGAGGA+GGG + chr8.3:28958052-28958071 None:intergenic 50.0%
!! TTGAGAGGAGGTGTTTGAGG+AGG + chr8.3:28958053-28958072 None:intergenic 50.0%
!!! AGCTTTTGCTCTGGGGTTAC+AGG + chr8.3:28959219-28959238 None:intergenic 50.0%
!!! GCTTTTGCTCTGGGGTTACA+GGG + chr8.3:28959218-28959237 None:intergenic 50.0%
ACTAGGCCATAGGCCTCAGT+CGG - chr8.3:28962104-28962123 MS.gene27219:CDS 55.0%
ATGTAGCTGACCCCGCTTAG+TGG - chr8.3:28958624-28958643 MS.gene27219:intron 55.0%
CATTAGTTGCTCAACGGCGC+CGG + chr8.3:28958199-28958218 None:intergenic 55.0%
CCCCAGAGCAAAAGCTCTTG+AGG - chr8.3:28959223-28959242 MS.gene27219:intron 55.0%
CCCCAGAGCAAATTCTCCTG+AGG - chr8.3:28959103-28959122 MS.gene27219:intron 55.0%
CTCGGTAGGTCAATCGCTAG+AGG + chr8.3:28960479-28960498 None:intergenic 55.0%
GCCCGAGCAGTTTGATGTCA+TGG - chr8.3:28960007-28960026 MS.gene27219:intron 55.0%
GTAACCTACATGCACCGTCC+CGG - chr8.3:28958114-28958133 MS.gene27219:CDS 55.0%
TGGAGTCATGCCAGGAGGTA+TGG - chr8.3:28961200-28961219 MS.gene27219:intron 55.0%
TGGCAAGACGGAGCCATTCA+AGG + chr8.3:28959303-28959322 None:intergenic 55.0%
TGTAGCTGACCCCGCTTAGT+GGG - chr8.3:28958625-28958644 MS.gene27219:intron 55.0%
! GAGGTGTTTGAGGAGGGGTA+TGG + chr8.3:28958046-28958065 None:intergenic 55.0%
! GGTAGGTTGGAGCTGGTTGT+TGG - chr8.3:28962216-28962235 MS.gene27219:CDS 55.0%
! TAAGTCAGGTTGCCCGACTG+AGG + chr8.3:28962120-28962139 None:intergenic 55.0%
! TCTAGTTTGCCCAAGACGGG+TGG + chr8.3:28962047-28962066 None:intergenic 55.0%
! TTTGAGCAGGGTGCTTCAGC+AGG - chr8.3:28962368-28962387 MS.gene27219:CDS 55.0%
!! ATTGGGATCGGGTTGAGAGG+AGG + chr8.3:28958065-28958084 None:intergenic 55.0%
!! GAGAGGAGGTGTTTGAGGAG+GGG + chr8.3:28958051-28958070 None:intergenic 55.0%
!! GATGAGAGAAGAAGCGCCAC+TGG + chr8.3:28962437-28962456 None:intergenic 55.0%
!! GGGTTGAGAGGAGGTGTTTG+AGG + chr8.3:28958056-28958075 None:intergenic 55.0%
ACTGCAGCTGGCATTGCTGG+AGG - chr8.3:28961174-28961193 MS.gene27219:intron 60.0%
CGGCGCCGTTGAGCAACTAA+TGG - chr8.3:28958197-28958216 MS.gene27219:CDS 60.0%
CGGGGATTAGGGTTACGGGA+CGG + chr8.3:28958152-28958171 None:intergenic 60.0%
CGTCCCGTAACCCTAATCCC+CGG - chr8.3:28958150-28958169 MS.gene27219:CDS 60.0%
CTAGGCCATAGGCCTCAGTC+GGG - chr8.3:28962105-28962124 MS.gene27219:CDS 60.0%
GATTAGGGTTACGGGACGGG+GGG + chr8.3:28958148-28958167 None:intergenic 60.0%
GGATTAGGGTTACGGGACGG+GGG + chr8.3:28958149-28958168 None:intergenic 60.0%
GGGATTAGGGTTACGGGACG+GGG + chr8.3:28958150-28958169 None:intergenic 60.0%
GGGGATTAGGGTTACGGGAC+GGG + chr8.3:28958151-28958170 None:intergenic 60.0%
GTAACCCTAATCCCCGGCGA+CGG - chr8.3:28958156-28958175 MS.gene27219:CDS 60.0%
GTCGCCGGGGATTAGGGTTA+CGG + chr8.3:28958157-28958176 None:intergenic 60.0%
TAACCCTAATCCCCGGCGAC+GGG - chr8.3:28958157-28958176 MS.gene27219:CDS 60.0%
TCGCCGGGGATTAGGGTTAC+GGG + chr8.3:28958156-28958175 None:intergenic 60.0%
!! CGGATTGGGATCGGGTTGAG+AGG + chr8.3:28958068-28958087 None:intergenic 60.0%
CTAATCCCCGGCGACGGGAT+CGG - chr8.3:28958162-28958181 MS.gene27219:CDS 65.0%
GATCCCGTCGCCGGGGATTA+GGG + chr8.3:28958163-28958182 None:intergenic 65.0%
GGGATCGGCCCACTCGTAAC+CGG - chr8.3:28958177-28958196 MS.gene27219:CDS 65.0%
GGTTGCCCGACTGAGGCCTA+TGG + chr8.3:28962113-28962132 None:intergenic 65.0%
TACATGCACCGTCCCGGCGA+CGG - chr8.3:28958120-28958139 MS.gene27219:CDS 65.0%
! GCTGGCATTGCTGGAGGCAC+TGG - chr8.3:28961180-28961199 MS.gene27219:intron 65.0%
! GGCACTGGAGTCATGCCAGG+AGG - chr8.3:28961195-28961214 MS.gene27219:intron 65.0%
!! CAACGGCGCCGGTTACGAGT+GGG + chr8.3:28958188-28958207 None:intergenic 65.0%
!! GGAGGCACTGGAGTCATGCC+AGG - chr8.3:28961192-28961211 MS.gene27219:intron 65.0%
!! TCAACGGCGCCGGTTACGAG+TGG + chr8.3:28958189-28958208 None:intergenic 65.0%
CGATCCCGTCGCCGGGGATT+AGG + chr8.3:28958164-28958183 None:intergenic 70.0%
GTCGCCGGGACGGTGCATGT+AGG + chr8.3:28958121-28958140 None:intergenic 70.0%
AGTGGGCCGATCCCGTCGCC+GGG + chr8.3:28958171-28958190 None:intergenic 75.0%
GAGTGGGCCGATCCCGTCGC+CGG + chr8.3:28958172-28958191 None:intergenic 75.0%
! GGACGGGGGGTTCCGTCGCC+GGG + chr8.3:28958135-28958154 None:intergenic 80.0%
! GGGACGGGGGGTTCCGTCGC+CGG + chr8.3:28958136-28958155 None:intergenic 80.0%
! GGGGGGTTCCGTCGCCGGGA+CGG + chr8.3:28958131-28958150 None:intergenic 80.0%
! GTGGGCCGATCCCGTCGCCG+GGG + chr8.3:28958170-28958189 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 28958027 28962616 28958027 ID=MS.gene27219
chr8.3 mRNA 28958027 28962616 28958027 ID=MS.gene27219.t1;Parent=MS.gene27219
chr8.3 exon 28962095 28962616 28962095 ID=MS.gene27219.t1.exon1;Parent=MS.gene27219.t1
chr8.3 CDS 28962095 28962616 28962095 ID=cds.MS.gene27219.t1;Parent=MS.gene27219.t1
chr8.3 exon 28960615 28960854 28960615 ID=MS.gene27219.t1.exon2;Parent=MS.gene27219.t1
chr8.3 CDS 28960615 28960854 28960615 ID=cds.MS.gene27219.t1;Parent=MS.gene27219.t1
chr8.3 exon 28959427 28959505 28959427 ID=MS.gene27219.t1.exon3;Parent=MS.gene27219.t1
chr8.3 CDS 28959427 28959505 28959427 ID=cds.MS.gene27219.t1;Parent=MS.gene27219.t1
chr8.3 exon 28958027 28958301 28958027 ID=MS.gene27219.t1.exon4;Parent=MS.gene27219.t1
chr8.3 CDS 28958027 28958301 28958027 ID=cds.MS.gene27219.t1;Parent=MS.gene27219.t1
Gene Sequence

>MS.gene27219

ATGGCAACAAGAAGATCCATACCCCTCCTCAAACACCTCCTCTCAACCCGATCCCAATCCGAACCATTCACCATCTCAAAACGATGCGTAACCTACATGCACCGTCCCGGCGACGGAACCCCCCGTCCCGTAACCCTAATCCCCGGCGACGGGATCGGCCCACTCGTAACCGGCGCCGTTGAGCAACTAATGGAAGCGATGCACGCGCCAGTTTACTTTGAGAAATTCGACGTACATGGTGACATGAAAGCTGTACCTACGGAAGTTCTTGAATCGATCCGTAAGAATAAGGTTTGTCTTAAAGGTGGATTGGTTACTCCTATGGGTGGTGGTGTTAGTTCGCTTAATGTTCAGTTGAGGAAAGAGCTTGATCTTTATGCTTCGCTTGTTAATTGTTTTAATCTTCCTGGGTTACCTACTCGACATGATAACGTTGATATTGTAGTTATTAGGGAGAATACTGAAGGGGAGTATGCTGGTCTTGAACATGAGGTTGTTCCCGGTGTCGTCGAAAGTCTTAAGGTATAATTATTTGCTATCATTTCTTTGTTTTTTGATTGAGGAGAAAAACATGGTTTTTGATAGAGCGTTTGATTCATGTAGCTGACCCCGCTTAGTGGGATAAGACTTGGTTGTTGTTGTTGCTTTTTGATTTGGTTTTGAAGTTATTAGTTGTGTGTTTAATAAGAAAAATTCAAAATTAAAATCATTAAATTCTTGGTGTATGATTGAGAATATTGAGAAAAATCCAAGTAGAAATATAGATAAGACCTGAAATGAGTTAATAGAGTTACTTCTAACTCTACAAGCTGATTTTGTTTTGATGAGTTAGACATAATCTTAGAAACTAATAGATAATTCATAGTGTTGTTTAGATACGTATGTTTGCAAGGGAAATCCATGTATAGTAATGAATATTAATTTGAAATTTCATAAATGATCTTGTAGGGATTAGTTTATTTCTTAATTGTGTGGTTTCTTAAAAAGGTTTTTGATTGCAATATGAGCCACAACATCACGGCTTTTGATGTCTTTGTGACTGTAAGCGAAGCAATCATGAATGAAGTTGCTCGTAACCCCAGAGCAAATTCTCCTGAGGGAAGAGGCTTTTGATGGCTTTCGATCTTGTAGGCAATAAACTATATTATTGATTGAAAATAGATGTATTACAGAAGGAACTAAGAAGCTCCCTGTAACCCCAGAGCAAAAGCTCTTGAGGGAAGAGGCATTTCTCTTTCTCTTTCCAAACCTCTTAGGTTCCAACTTAAATTAACCTTGAATGGCTCCGTCTTGCCATGCCTTCTCCTTACATGTACGTTTCTTCCTCTAAAACCTGGCTGCATATGCAATTGTAACCATTTCACTAATCAGCACGTTTGGTTGGGCTTAGTCCCAAAACGTTGTATCTCACATCAATGACGGTGACACAACATCAATTTAAAACCTTGGTTCTTAAGTATTCAACATTGGAAACTAATTTGAAATGGTGTCAAGGCCAGGGTAATATTTGGATTAAAACGAGTCACAATTACCAGATTCAGTACTTTTTTTGTTTTCATTTATTTTATTGAATGAGCTGTAGTCTACCGTTTCAGGACATACTTGTATACAAATATTTGAAAAATAAGGAATGAAAGTAGAAAACCTTCCCACAAATTATATTGGTTCTTATTTTCCATTGGAATATCTATCTAGGTTTTTTTGTTGTTGTACTGATGCAGTATTGGGTTGTGTTTGCGGTTTGACTTGATATTTTTGGTAGGTGATAACAAAGTTCTGTTCTGAGCGTATTGCTAAATATGCGTTCGAGTATGCTTACCTGAACAACAGAAAGCAAGTGACTGCTGTCCACAAAGCAAATATAATGAAGCTTGCAGATGGTTTGTTCTTGGAATCTTGTCGAGAAGTTGCCACAAAGTATCCTGGAATTAAATACAACGAAATTATTGTGGACAATTGTTGCATGCAGCTTGTTTCAAAGCCCGAGCAGTTTGATGTCATGGTAAGTAAAATTTATCCACTTTTCTTTAATCTATGATGGAACAAAGTAAACACATATTAAACCATCTTTTTTGTTTGTGCTTGAGCAAACAAACACTTTTCTTACCGACAATTAATGACTTCAGTATCAACTTAGAAATGAGTCAAGGCTGACAGCAGGACAAAGAAAAACAAGAGCTGTGTGGCTCGTATAGATCATGATTCCTGTTTTGCTATAGGTTTTTCACCGTTGGTTCAATCAAAGGTTGGCAACATGGGAAAAAGGAAAGAAAGATCATCTCCCAAGCACATTGTCCTGAAAGTTAAGAACTATAAGAATTTATAACAAAGAAACTACGCACAAATATCAGCAGAAACATTTTAAAAATTGAGTCTGAATATTATGTTCCGATAGCATCTGGTAATTGTTAACATGGACCAACCAACAGTTTTTCTTAGCCTTTCTCTTCCTCTAGCGATTGACCTACCGAGTCTTATCTACTCTCTATACTACGACATCCACATTCTCCTTCACACATGCTCAAACCTTGTAAGTTAAGATCAAACCCTTTTATGACATGGATCAACAAGGTTTGAATGTCTGGGAAATATATTTACTTATTTCCCTTGTTCATGTGTAGATAGATAAAGTTAAGATTTATGATAGAGAATTGTGTAATAGTCTTCAACGACCTTTAAGGTATGTCTGGAATTTGGATGTAGAAGTTTAGAGGGAAGGTAGGGGAATTTCTCCTTTCTTTCTGTTTGAAAAGGAGAGGAATAAAACGAGAGATCATCACTTAACTTTCCAAAGCCACTTATTCATTTTTAAAAACATTATATCACTCCAATTTATAAAAAAATTAACCCTTCAGTCCCTTTCTCCCCTAACTTATCCATCCAACAAACAACCCTGGAGGATGTAGATGTACTTTGTGGAATATTGAAGGGGCAATTAAATTTTTCCTTTCTTTTCTATTGGTCTAAGCAAGAATCATTGCTGTGGGTTGGTCATCAACCTTAGGTCTTGATGGTTTTGTCTTGCAACTTACCGGTCTTCACAATTTGTTTCTGATTTTTGGTTGAATAAAAGTAGTTTTGAAATTCATGCATACTTTTACCTTGTGCTAGGTTACCCCAAACCTGTATGGAAATCTAGTTGCAAATACTGCAGCTGGCATTGCTGGAGGCACTGGAGTCATGCCAGGAGGTATGGTTTTTCGTCACTACTGTATTGCAACCTTAGAGCTTTGATCTGATTATGTTTCCTTTTAAATATTTTCTTTCCCTCTTTTACCATGTTATCAGACGTGTGAATAATGTTCAAAATTTGATAGACTAGACAGAGAGTTTCTGTTGCTTTTCTAGATGATTGTTCTGGACAACATTTTTATGCATCGAAAAACTTTGCAAATAAACACTACTTCATTAAATTTGCCTCTTTGATCATATGAGACCTCTTTGTTAGTCTACTTAGAGACCGAGTTCATATCAACTTCTTTAAATAAATTATCTAACCTATCTTTAAATAGTCTAACAGACTAATATGCAATGGGTTAGGTTCTCTTTATAATAAGATAAAACTAAAAAACTAAAACCAGTACTTCTGAGAGACATGATACAGAGATAGAAATAGACGGGACAAACTGAGTTTTATAAGTCAGATTCTGATTTGTTTTGTTTGCATAAATCTTTTTTGAGGTCTAATCTTGCATTTTAAAGAATTTGACCTTACATGATAACCCATTTAAATTTTAATTTACAGTAAGACATTTAAATATGCCAAAAATTCATGAAGGTAGTAGTATGAATTAATTATTGAAAATGTTAGCAAACATATAATCTAACGAAACGTACAAAATTCAATATTAATAATACTTAATAATAAGAGAAATAAGGAGTTATTATTTACATTTATTTCAATATGTCGGTCTGTTAGACCTAATATTTTTTTTTGTTGTGGCCATGAAGCACTGGCTATTTAGCTAAATAAACTGCCAAAAATATTTAACTTTGTTTACTTAATAAAATGTCTGACCACCCGTCTTGGGCAAACTAGACTAGGCCATAGGCACCCTAAAAAAAATTAAATAAAGGACTAGGCCATAGGCCTCAGTCGGGCAACCTGACTTATTTCCATTCCTAAATGGGGGTATTAGTGGCTTGTGGCTATATGAAATATGATGATGGTGGTGGTGAAAGTACTCTTGGTAGGTTGGAGCTGGTTGTTGGGTTTAGGGCTTTTGGGTAGACGTTATATTATTCAGACACTTGATTCTCTATTCTCACATTATAGCCTGATAATCACAAACACAAACCATGTCTTTTTTTGCAGGTAATGTTGGTGCTGAGCATGCTGTGTTTGAGCAGGGTGCTTCAGCAGGAAATGTTGGTAATGAGAAAGTAGCGGCACAAAAGACAGCTAACCCAGTGGCGCTTCTTCTCTCATCAGCTATGATGCTTAGGCATCTCCAGTTTCCTGCATTTGCTGACCGTTTGGAAAACGCTGTTGAAAAAGTCATTCTAGAGGGCAAGTATCGGACAAAGGATCTTGGAGGGACAAGCACCACCCAAGAAGTTGTCGATGCAGTAATAGATGCTTTAGATTGA

Protein sequence

>MS.gene27219.t1

MATRRSIPLLKHLLSTRSQSEPFTISKRCVTYMHRPGDGTPRPVTLIPGDGIGPLVTGAVEQLMEAMHAPVYFEKFDVHGDMKAVPTEVLESIRKNKVCLKGGLVTPMGGGVSSLNVQLRKELDLYASLVNCFNLPGLPTRHDNVDIVVIRENTEGEYAGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKQVTAVHKANIMKLADGLFLESCREVATKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGAEHAVFEQGASAGNVGNEKVAAQKTANPVALLLSSAMMLRHLQFPAFADRLENAVEKVILEGKYRTKDLGGTSTTQEVVDAVIDALD