AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene67551


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67551.t1 MTR_5g023740 98.910 367 4 0 1 367 1 367 0.0 744
MS.gene67551.t1 MTR_5g023740 97.820 367 4 1 1 367 1 363 0.0 731
MS.gene67551.t1 MTR_8g074030 88.710 372 36 2 1 367 1 371 0.0 674
MS.gene67551.t1 MTR_8g074030 87.634 372 36 3 1 367 1 367 0.0 662
MS.gene67551.t1 MTR_5g023740 98.556 277 4 0 1 277 1 277 0.0 565
MS.gene67551.t1 MTR_5g023740 98.556 277 4 0 1 277 1 277 0.0 564
MS.gene67551.t1 MTR_5g023740 97.112 277 4 1 1 277 1 273 0.0 553
MS.gene67551.t1 MTR_1g064070 48.634 366 174 5 6 366 2 358 1.69e-118 347
MS.gene67551.t1 MTR_3g101470 48.732 355 169 3 17 366 7 353 2.07e-116 342
MS.gene67551.t1 MTR_2g104610 29.132 357 197 15 32 349 35 374 9.68e-28 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67551.t1 AT4G35260 85.246 366 53 1 3 367 2 367 0.0 639
MS.gene67551.t1 AT4G35650 81.694 366 65 1 4 367 3 368 0.0 629
MS.gene67551.t1 AT2G17130 82.240 366 64 1 3 367 2 367 0.0 619
MS.gene67551.t1 AT2G17130 81.148 366 64 2 3 367 2 363 0.0 606
MS.gene67551.t1 AT5G03290 51.190 336 156 2 36 366 42 374 2.98e-117 345
MS.gene67551.t1 AT3G09810 51.190 336 156 4 36 366 42 374 1.49e-112 333
MS.gene67551.t1 AT1G32480 62.500 224 69 5 37 257 2 213 1.06e-90 271
MS.gene67551.t1 AT5G14200 28.792 389 224 16 1 349 5 380 1.86e-30 120
MS.gene67551.t1 AT1G80560 29.630 351 197 13 40 354 45 381 1.97e-30 120
MS.gene67551.t1 AT5G14200 28.792 389 224 16 1 349 5 380 2.77e-30 120
MS.gene67551.t1 AT1G31180 28.974 390 223 16 1 349 1 377 3.63e-30 119
MS.gene67551.t1 AT1G31180 28.974 390 223 16 1 349 16 392 6.25e-30 119
MS.gene67551.t1 AT5G14200 26.596 282 165 10 1 246 5 280 4.65e-13 69.7

Find 107 sgRNAs with CRISPR-Local

Find 366 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGATTCCGTCGCCGGGGATT+AGG 0.169058 5.4:+15220710 None:intergenic
ATGTTGATATTGTTGTTATT+AGG 0.236899 5.4:-15220414 MS.gene67551:CDS
GGGGATTAGGGTTACATTGC+GGG 0.275523 5.4:+15220723 None:intergenic
TGTTGATATTGTTGTTATTA+GGG 0.290952 5.4:-15220413 MS.gene67551:CDS
GCTTGCAGATGGTTTATTCT+TGG 0.304514 5.4:-15218341 MS.gene67551:CDS
GGAATCGATTAAGAAGAATA+AGG 0.340964 5.4:-15220575 MS.gene67551:CDS
GATTCCGTCGCCGGGGATTA+GGG 0.344303 5.4:+15220711 None:intergenic
GTGGGTGAGGTGGTGGCGCG+TGG 0.349708 5.4:+15220789 None:intergenic
AACAAGATTTCCATAAAGAT+TGG 0.353298 5.4:+15216844 None:intergenic
CTTGAACATGAGGTTGTTCC+CGG 0.354977 5.4:-15220364 MS.gene67551:CDS
GTCAATTGCTTTAATCTTGA+GGG 0.368284 5.4:-15220457 MS.gene67551:CDS
AATACAGCGGCAGGCATTGC+TGG 0.369556 5.4:-15216818 MS.gene67551:CDS
ATCTTGAGGGATTGACTACT+AGG 0.383171 5.4:-15220444 MS.gene67551:CDS
AAGAATAAGGTTTGTTTGAA+AGG 0.390329 5.4:-15220562 MS.gene67551:CDS
ATTTCATTATACTTGATTCC+AGG 0.392374 5.4:+15218289 None:intergenic
ACAAGATTTCCATAAAGATT+GGG 0.395363 5.4:+15216845 None:intergenic
GGGGTTCCGTCTCCGGGGCG+GGG 0.409508 5.4:+15220745 None:intergenic
GGCATGTAGGTTACGGTACG+GGG 0.414877 5.4:+15220766 None:intergenic
TCCAATCGTTCAGCAAATAC+AGG 0.416645 5.4:+15215797 None:intergenic
GGGATTAGGGTTACATTGCG+GGG 0.421936 5.4:+15220724 None:intergenic
ATGTCTTTGCAGGTAATGTT+GGG 0.422079 5.4:-15215952 MS.gene67551:intron
GGAATCGGCCCTCTCGTAAC+CGG 0.429953 5.4:-15220694 MS.gene67551:CDS
GGGCATGTAGGTTACGGTAC+GGG 0.430343 5.4:+15220765 None:intergenic
CTTGATTCCAGGATACTTTG+TGG 0.435276 5.4:+15218300 None:intergenic
TCCTGTATTTGCTGAACGAT+TGG 0.436123 5.4:-15215798 MS.gene67551:CDS
GCAGGCATTGCTGGAGGCAC+TGG 0.441704 5.4:-15216809 MS.gene67551:CDS
CTAATCCCCGGCGACGGAAT+CGG 0.445934 5.4:-15220709 MS.gene67551:CDS
CGGGGATTAGGGTTACATTG+CGG 0.449437 5.4:+15220722 None:intergenic
GTCTCCGGGGCGGGGCATGT+AGG 0.455315 5.4:+15220753 None:intergenic
TCGAATTTCTCGAAGTGCAC+TGG 0.458066 5.4:+15220637 None:intergenic
GGAGGCACTGGTGTCATGCC+GGG 0.461037 5.4:-15216797 MS.gene67551:CDS
TACTGCATCAACAACCTCTT+GGG 0.461914 5.4:+15215706 None:intergenic
GGGTGGTGCTTGTCCCTCCA+AGG 0.470554 5.4:+15215726 None:intergenic
ATCGATTCCATCACTTCAGA+TGG 0.475497 5.4:+15220589 None:intergenic
TTACTGCATCAACAACCTCT+TGG 0.475996 5.4:+15215705 None:intergenic
AGAGGGCCGATTCCGTCGCC+GGG 0.478788 5.4:+15220703 None:intergenic
AATAAGGTTTGTTTGAAAGG+TGG 0.479450 5.4:-15220559 MS.gene67551:CDS
TGTCAATTGCTTTAATCTTG+AGG 0.482650 5.4:-15220458 MS.gene67551:CDS
GCCTGAGCAATTTGATGTCA+TGG 0.486144 5.4:-15218230 MS.gene67551:intron
CTTGTTGCAAATACAGCGGC+AGG 0.486316 5.4:-15216827 MS.gene67551:CDS
AAGGAGAAGTGCCACAGGAT+TGG 0.491158 5.4:+15215853 None:intergenic
AAGGTGTTTGAGGAGGTTTG+TGG 0.493042 5.4:+15220816 None:intergenic
GAGAGGGCCGATTCCGTCGC+CGG 0.493954 5.4:+15220702 None:intergenic
GGATTAGGGTTACATTGCGG+GGG 0.495232 5.4:+15220725 None:intergenic
TGGAGGCACTGGTGTCATGC+CGG 0.510683 5.4:-15216798 MS.gene67551:CDS
GGTTTGTTTGAAAGGTGGAT+TGG 0.511723 5.4:-15220554 MS.gene67551:CDS
TTGGCGACTCCGATGGGTGG+TGG 0.513125 5.4:-15220535 MS.gene67551:CDS
GAGGTTGCCACAAAGTATCC+TGG 0.516332 5.4:-15218307 MS.gene67551:CDS
CATTACTTGCTCAACAGCGC+CGG 0.519638 5.4:+15220675 None:intergenic
GCGTGGAGATAAGGTGTTTG+AGG 0.525687 5.4:+15220806 None:intergenic
AATGTCTTTGCAGGTAATGT+TGG 0.527179 5.4:-15215953 MS.gene67551:intron
CAAGATTTCCATAAAGATTG+GGG 0.528612 5.4:+15216846 None:intergenic
GCTTAATTTGCAGCTGAGGA+AGG 0.528655 5.4:-15220503 MS.gene67551:CDS
TGAGCATCATTGCGGAAGAA+AGG 0.530564 5.4:+15215834 None:intergenic
GGGGCGGGGCATGTAGGTTA+CGG 0.533314 5.4:+15220759 None:intergenic
TACATGCCCCGCCCCGGAGA+CGG 0.536211 5.4:-15220751 MS.gene67551:CDS
TTTGAACAAGGTGCTTCCGC+AGG 0.536373 5.4:-15215914 MS.gene67551:CDS
GTTATTAGGGAGAATACTGA+AGG 0.537381 5.4:-15220400 MS.gene67551:CDS
GGTGGTGGCGCGTGGAGATA+AGG 0.541475 5.4:+15220797 None:intergenic
CGGCGCTGTTGAGCAAGTAA+TGG 0.541644 5.4:-15220674 MS.gene67551:CDS
GGTGGATTGGCGACTCCGAT+GGG 0.544930 5.4:-15220541 MS.gene67551:CDS
TTGAGACTCTCAACGACACC+GGG 0.546059 5.4:+15220346 None:intergenic
AGCGATTCCATCTGAAGTGA+TGG 0.550636 5.4:-15220596 MS.gene67551:CDS
AGGTGGATTGGCGACTCCGA+TGG 0.556949 5.4:-15220542 MS.gene67551:CDS
AACATTATGAAGCTTGCAGA+TGG 0.557251 5.4:-15218352 MS.gene67551:CDS
ACCATGACATCAAATTGCTC+AGG 0.558319 5.4:+15218229 None:intergenic
GGTGCTTCCGCAGGAAATGT+TGG 0.560130 5.4:-15215905 MS.gene67551:CDS
GATTAGGGTTACATTGCGGG+GGG 0.563580 5.4:+15220726 None:intergenic
CGCAATGTAACCCTAATCCC+CGG 0.573917 5.4:-15220721 MS.gene67551:CDS
TTCCGCAGGAAATGTTGGTA+AGG 0.574592 5.4:-15215900 MS.gene67551:CDS
AATACTGAAGGGGAATATGC+TGG 0.581107 5.4:-15220388 MS.gene67551:CDS
CTTGAGACTCTCAACGACAC+CGG 0.585873 5.4:+15220345 None:intergenic
ATTCTTGGAATCTTGTCGAG+AGG 0.590626 5.4:-15218326 MS.gene67551:CDS
GGATTGGCGACTCCGATGGG+TGG 0.593367 5.4:-15220538 MS.gene67551:CDS
GTAACCCTAATCCCCGGCGA+CGG 0.593645 5.4:-15220715 MS.gene67551:CDS
TACAGGACAAAGGACCTTGG+AGG 0.595343 5.4:-15215740 MS.gene67551:CDS
GTATCTAAATAACAGAAAGA+AGG 0.597022 5.4:-15218395 MS.gene67551:CDS
GTTCGCTTAATTTGCAGCTG+AGG 0.597579 5.4:-15220507 MS.gene67551:CDS
GGGGCATGTAGGTTACGGTA+CGG 0.599567 5.4:+15220764 None:intergenic
TGGAGATAAGGTGTTTGAGG+AGG 0.600685 5.4:+15220809 None:intergenic
GCATGTAGGTTACGGTACGG+GGG 0.601867 5.4:+15220767 None:intergenic
TTCGAGAAATTCGAAGTGCA+TGG 0.602914 5.4:-15220628 MS.gene67551:CDS
GTAACCTACATGCCCCGCCC+CGG 0.604970 5.4:-15220757 MS.gene67551:CDS
GAAGAAAGGAGAAGTGCCAC+AGG 0.610058 5.4:+15215848 None:intergenic
TGCATCAACAACCTCTTGGG+TGG 0.620983 5.4:+15215709 None:intergenic
CAACAGCGCCGGTTACGAGA+GGG 0.629447 5.4:+15220686 None:intergenic
CGGTGTCGTTGAGAGTCTCA+AGG 0.630865 5.4:-15220344 MS.gene67551:intron
ACAGGACAAAGGACCTTGGA+GGG 0.632351 5.4:-15215739 MS.gene67551:CDS
GGCACTGGTGTCATGCCGGG+AGG 0.634816 5.4:-15216794 MS.gene67551:intron
TATTAGGGAGAATACTGAAG+GGG 0.638863 5.4:-15220398 MS.gene67551:CDS
ACAGCGGCAGGCATTGCTGG+AGG 0.645225 5.4:-15216815 MS.gene67551:CDS
CACCTTGTTCAAATACAGCA+TGG 0.646572 5.4:+15215924 None:intergenic
AAGTACAGGACAAAGGACCT+TGG 0.646920 5.4:-15215743 MS.gene67551:CDS
TTCCTTACCAACATTTCCTG+CGG 0.649166 5.4:+15215898 None:intergenic
TCAACAGCGCCGGTTACGAG+AGG 0.650212 5.4:+15220685 None:intergenic
TTATTAGGGAGAATACTGAA+GGG 0.651297 5.4:-15220399 MS.gene67551:CDS
ATATGCTGGTCTTGAACATG+AGG 0.652648 5.4:-15220374 MS.gene67551:CDS
TGTCTTTGCAGGTAATGTTG+GGG 0.652865 5.4:-15215951 MS.gene67551:intron
AGAGGGTAAGTACAGGACAA+AGG 0.652879 5.4:-15215750 MS.gene67551:CDS
GAACTAACACCACCACCCAT+CGG 0.665416 5.4:+15220526 None:intergenic
AAGATTTCCATAAAGATTGG+GGG 0.670781 5.4:+15216847 None:intergenic
GACCATGCTGTATTTGAACA+AGG 0.680946 5.4:-15215926 MS.gene67551:CDS
AAGATGTCTGAGCATCATTG+CGG 0.685294 5.4:+15215826 None:intergenic
GAGGGCCGATTCCGTCGCCG+GGG 0.686332 5.4:+15220704 None:intergenic
AGGGACAAGCACCACCCAAG+AGG 0.691399 5.4:-15215720 MS.gene67551:CDS
AGAAAAGAAAGCCAATCCTG+TGG 0.714161 5.4:-15215864 MS.gene67551:CDS
AAATCTTGTTGCAAATACAG+CGG 0.734643 5.4:-15216831 MS.gene67551:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTAAATTAATTAATTAA+TGG - chr5.4:15216264-15216283 MS.gene67551:intron 0.0%
!!! TTTTTTTAAATAAAAAAATT+TGG - chr5.4:15218399-15218418 MS.gene67551:CDS 0.0%
!! TAATTAAATATGATAAAAGT+TGG + chr5.4:15217531-15217550 None:intergenic 10.0%
!!! ATTTTTTTTTGCTTATAATA+TGG - chr5.4:15217747-15217766 MS.gene67551:intron 10.0%
!!! TTTTTTTTTGCTTATAATAT+GGG - chr5.4:15217748-15217767 MS.gene67551:intron 10.0%
!! ATATAATACATTCATTCTTA+CGG - chr5.4:15217363-15217382 MS.gene67551:intron 15.0%
!! ATTCTAATGAAAATATAGAT+AGG - chr5.4:15220426-15220445 MS.gene67551:CDS 15.0%
!! TTCTAATGAAAATATAGATA+GGG - chr5.4:15220427-15220446 MS.gene67551:CDS 15.0%
!! TTGTAATAATGAATACAAAA+GGG - chr5.4:15219479-15219498 MS.gene67551:intron 15.0%
!! TTTGTAATAATGAATACAAA+AGG - chr5.4:15219478-15219497 MS.gene67551:intron 15.0%
!!! CATCATAATTTTTTTAACAT+AGG - chr5.4:15219262-15219281 MS.gene67551:intron 15.0%
!!! GTTTTTTTTGCTTATAATTT+AGG + chr5.4:15217473-15217492 None:intergenic 15.0%
!!! TATATTTCCTTTTATTACTT+TGG - chr5.4:15218485-15218504 MS.gene67551:intron 15.0%
!!! TATTTAATTAGGTTTTGATA+TGG - chr5.4:15219371-15219390 MS.gene67551:intron 15.0%
!!! TTTAATCAATCACTATATTT+TGG + chr5.4:15219995-15220014 None:intergenic 15.0%
!! AAGACTCAAATAATTATCTT+TGG + chr5.4:15218621-15218640 None:intergenic 20.0%
!! AATATTCAAATGTGATAGTT+TGG + chr5.4:15216338-15216357 None:intergenic 20.0%
!! CGTATAATTAGATTAAACTA+GGG + chr5.4:15219290-15219309 None:intergenic 20.0%
!! GAATATACTTTGTATTTAAC+AGG - chr5.4:15217059-15217078 MS.gene67551:intron 20.0%
!! TAATCTTGATACAATTAAGA+TGG - chr5.4:15216365-15216384 MS.gene67551:intron 20.0%
!! TAATTCTCCAAAGTAATAAA+AGG + chr5.4:15218495-15218514 None:intergenic 20.0%
!! TATCTATACAGCAAATATAA+AGG + chr5.4:15217949-15217968 None:intergenic 20.0%
!! TCAATGAAAACAAAAAATAG+AGG - chr5.4:15220030-15220049 MS.gene67551:intron 20.0%
!! TCGTATAATTAGATTAAACT+AGG + chr5.4:15219291-15219310 None:intergenic 20.0%
!! TGTAATAATGAATACAAAAG+GGG - chr5.4:15219480-15219499 MS.gene67551:intron 20.0%
!! TTACAATAAACAACCTTTAA+AGG + chr5.4:15217867-15217886 None:intergenic 20.0%
!! TTCCTATAAAACTTATTTCA+AGG - chr5.4:15217665-15217684 MS.gene67551:intron 20.0%
!! TTCTTTCAATCAATTATTTC+AGG - chr5.4:15219942-15219961 MS.gene67551:intron 20.0%
!! TTGAAATTAAGAAAACATTG+AGG - chr5.4:15219533-15219552 MS.gene67551:intron 20.0%
!! TTGAAATTTGAATCATTTCA+TGG - chr5.4:15216851-15216870 MS.gene67551:CDS 20.0%
!! TTTCTTAACAATTTCTCTTA+TGG + chr5.4:15216588-15216607 None:intergenic 20.0%
!!! AATGTTTTCTTAATTTCAAG+TGG + chr5.4:15219532-15219551 None:intergenic 20.0%
!!! ATCCTTGAAATAAGTTTTAT+AGG + chr5.4:15217670-15217689 None:intergenic 20.0%
!!! ATGTTGATATTGTTGTTATT+AGG - chr5.4:15216106-15216125 MS.gene67551:intron 20.0%
!!! CAAAAAATTATCTTTTCCAA+AGG - chr5.4:15217559-15217578 MS.gene67551:intron 20.0%
!!! CAACTTTTTCAATTAAATTG+TGG - chr5.4:15218448-15218467 MS.gene67551:CDS 20.0%
!!! GTCTTTTTTGCTTATAATTT+GGG + chr5.4:15217509-15217528 None:intergenic 20.0%
!!! TGTTGATATTGTTGTTATTA+GGG - chr5.4:15216107-15216126 MS.gene67551:intron 20.0%
!!! TTAACTTTTGTCATTTGAAA+AGG - chr5.4:15219338-15219357 MS.gene67551:intron 20.0%
!!! TTTTTGAAAGCAAATTAAAC+AGG - chr5.4:15218689-15218708 MS.gene67551:intron 20.0%
!!! TTTTTGCTTATAATTTAGGA+CGG + chr5.4:15217469-15217488 None:intergenic 20.0%
! AAAAAGAAAATCTAGGAAGA+AGG - chr5.4:15219193-15219212 MS.gene67551:intron 25.0%
! AAAAATGTTTAAACAAGTGC+TGG + chr5.4:15218384-15218403 None:intergenic 25.0%
! AAAATCAAAAGCAAAATGAC+TGG + chr5.4:15219614-15219633 None:intergenic 25.0%
! AAATCAAAAGCAAAATGACT+GGG + chr5.4:15219613-15219632 None:intergenic 25.0%
! AACAAGATTTCCATAAAGAT+TGG + chr5.4:15219679-15219698 None:intergenic 25.0%
! ACAAGATTTCCATAAAGATT+GGG + chr5.4:15219678-15219697 None:intergenic 25.0%
! ATACACTGCTAAAATATTGA+AGG + chr5.4:15220249-15220268 None:intergenic 25.0%
! ATGAAAACAAAAAATAGAGG+TGG - chr5.4:15220033-15220052 MS.gene67551:intron 25.0%
! ATTTCATTATACTTGATTCC+AGG + chr5.4:15218234-15218253 None:intergenic 25.0%
! ATTTGATAAGAAAAATGCCA+CGG + chr5.4:15219814-15219833 None:intergenic 25.0%
! CCAAAAGTGGATAAATAATT+GGG + chr5.4:15218344-15218363 None:intergenic 25.0%
! GATGTAAAAACAATTTCCAT+TGG + chr5.4:15217645-15217664 None:intergenic 25.0%
! GTATCTAAATAACAGAAAGA+AGG - chr5.4:15218125-15218144 MS.gene67551:intron 25.0%
! GTTGGATGTTGTATTTAATT+AGG - chr5.4:15219360-15219379 MS.gene67551:intron 25.0%
! GTTTAATCTAATTATACGAG+AGG - chr5.4:15219292-15219311 MS.gene67551:intron 25.0%
! TTAGTAATATTTATACCTCC+CGG + chr5.4:15219744-15219763 None:intergenic 25.0%
! TTATTGTCGTGAGTTAATAA+GGG + chr5.4:15216677-15216696 None:intergenic 25.0%
! TTCCCATCTACAAATTAATT+AGG - chr5.4:15217146-15217165 MS.gene67551:intron 25.0%
! TTTATTGTCGTGAGTTAATA+AGG + chr5.4:15216678-15216697 None:intergenic 25.0%
!! AAACAATTTCCATTGGTTAT+TGG + chr5.4:15217638-15217657 None:intergenic 25.0%
!! AAGAATAAGGTTTGTTTGAA+AGG - chr5.4:15215958-15215977 MS.gene67551:intron 25.0%
!! ATGTATAATTTGCGTGTTTA+TGG - chr5.4:15216987-15217006 MS.gene67551:intron 25.0%
!! ATTAGGAGGTTTAATTTCTT+CGG - chr5.4:15217163-15217182 MS.gene67551:intron 25.0%
!! GTTACAGTTAAGTGATTTTT+CGG - chr5.4:15216723-15216742 MS.gene67551:intron 25.0%
!! TTGTTAGACATATTTTGCAT+CGG - chr5.4:15217108-15217127 MS.gene67551:intron 25.0%
!!! CTCCTAATTAATTTGTAGAT+GGG + chr5.4:15217151-15217170 None:intergenic 25.0%
!!! CTTTGCATTTAATTTTCCTT+TGG + chr5.4:15217578-15217597 None:intergenic 25.0%
!!! GAAGGTTGATTTTTCATTAA+TGG + chr5.4:15220231-15220250 None:intergenic 25.0%
!!! GGTCTTTTTTGCTTATAATT+TGG + chr5.4:15217510-15217529 None:intergenic 25.0%
AAATCTTGTTGCAAATACAG+CGG - chr5.4:15219689-15219708 MS.gene67551:intron 30.0%
AAGATTTCCATAAAGATTGG+GGG + chr5.4:15219676-15219695 None:intergenic 30.0%
AATAGTATCTTGCTTCCATA+TGG - chr5.4:15219831-15219850 MS.gene67551:intron 30.0%
AATCGAGATATTCAAGCTTA+AGG + chr5.4:15220538-15220557 None:intergenic 30.0%
AATTTCTCTTATGGTTCTCT+AGG + chr5.4:15216579-15216598 None:intergenic 30.0%
AGGAAATATAAACAGACACA+TGG + chr5.4:15218475-15218494 None:intergenic 30.0%
ATAAACATATCAGCCAAAAG+TGG + chr5.4:15218357-15218376 None:intergenic 30.0%
ATTCAAGCTTAAGGTTAAAG+TGG + chr5.4:15220529-15220548 None:intergenic 30.0%
ATTCATTTATCTTCCTCAAC+AGG - chr5.4:15220075-15220094 MS.gene67551:intron 30.0%
ATTTGAATCATTTCATGGCT+AGG - chr5.4:15216856-15216875 MS.gene67551:intron 30.0%
CAAGATTTCCATAAAGATTG+GGG + chr5.4:15219677-15219696 None:intergenic 30.0%
CCATCTACAAATTAATTAGG+AGG - chr5.4:15217149-15217168 MS.gene67551:intron 30.0%
CTGCTAATTTGAGTAATTTC+TGG - chr5.4:15219070-15219089 MS.gene67551:intron 30.0%
CTTTAGTTGAGTCAAATAAC+GGG - chr5.4:15220358-15220377 MS.gene67551:CDS 30.0%
CTTTCTTGCTAGTAATTGAT+TGG - chr5.4:15219580-15219599 MS.gene67551:intron 30.0%
GCCAAAAGTGGATAAATAAT+TGG + chr5.4:15218345-15218364 None:intergenic 30.0%
GCTAACTAAAAGAAAAGTAG+TGG - chr5.4:15217422-15217441 MS.gene67551:intron 30.0%
GCTTTAGTTGAGTCAAATAA+CGG - chr5.4:15220357-15220376 MS.gene67551:CDS 30.0%
GGAAATATAAACAGACACAT+GGG + chr5.4:15218474-15218493 None:intergenic 30.0%
GGAAATTTCCAATCATCTTT+GGG - chr5.4:15217384-15217403 MS.gene67551:intron 30.0%
GGAATCGATTAAGAAGAATA+AGG - chr5.4:15215945-15215964 MS.gene67551:intron 30.0%
GGACTATTCTTTAAATGTAG+AGG - chr5.4:15217916-15217935 MS.gene67551:intron 30.0%
GGATAAATAATTGGGATTCA+GGG + chr5.4:15218336-15218355 None:intergenic 30.0%
GTCAATTGCTTTAATCTTGA+GGG - chr5.4:15216063-15216082 MS.gene67551:intron 30.0%
TACAATGCTACTCATTTATC+CGG + chr5.4:15218577-15218596 None:intergenic 30.0%
TATTACCAGTGAATGCAATA+CGG + chr5.4:15217332-15217351 None:intergenic 30.0%
TCAAATTAGCAGAAACAGAA+AGG + chr5.4:15219062-15219081 None:intergenic 30.0%
TCATCTCACAAGAAAAAACT+TGG - chr5.4:15216931-15216950 MS.gene67551:intron 30.0%
TCTCAATAACCAATAACCAA+TGG - chr5.4:15217626-15217645 MS.gene67551:intron 30.0%
TCTTGATACAATTAAGATGG+TGG - chr5.4:15216368-15216387 MS.gene67551:intron 30.0%
TGGATAAATAATTGGGATTC+AGG + chr5.4:15218337-15218356 None:intergenic 30.0%
TGTCAATTGCTTTAATCTTG+AGG - chr5.4:15216062-15216081 MS.gene67551:intron 30.0%
TTATTAGGGAGAATACTGAA+GGG - chr5.4:15216121-15216140 MS.gene67551:intron 30.0%
TTTAGTTGAGTCAAATAACG+GGG - chr5.4:15220359-15220378 MS.gene67551:CDS 30.0%
! AAGAATAGTCCTCTAAGAAA+CGG + chr5.4:15217907-15217926 None:intergenic 30.0%
! AATAAGGTTTGTTTGAAAGG+TGG - chr5.4:15215961-15215980 MS.gene67551:intron 30.0%
! AATGCTATTTGGTAATATGC+GGG - chr5.4:15217243-15217262 MS.gene67551:intron 30.0%
! ATTTTGCATCGGAAATTTGT+GGG - chr5.4:15217119-15217138 MS.gene67551:intron 30.0%
! CCCAATTATTTATCCACTTT+TGG - chr5.4:15218341-15218360 MS.gene67551:CDS 30.0%
! CTAGATTTTCTTTTTGTGCA+GGG + chr5.4:15219188-15219207 None:intergenic 30.0%
! GAATGCTATTTGGTAATATG+CGG - chr5.4:15217242-15217261 MS.gene67551:intron 30.0%
! GTTTAATTTCTTCGGTGAAA+TGG - chr5.4:15217171-15217190 MS.gene67551:intron 30.0%
! TATTTTGCATCGGAAATTTG+TGG - chr5.4:15217118-15217137 MS.gene67551:intron 30.0%
! TGGTAGTGACAACATATAAT+TGG - chr5.4:15220148-15220167 MS.gene67551:intron 30.0%
! TGTATGAGATTTTCTATCGT+TGG - chr5.4:15218650-15218669 MS.gene67551:intron 30.0%
! TTTTATGTGTACTCACTCAT+TGG - chr5.4:15216821-15216840 MS.gene67551:CDS 30.0%
!! AGTATCTATTTCTGTTGAAC+TGG + chr5.4:15219407-15219426 None:intergenic 30.0%
!! ATTTGGTGCTATTAGTTTGT+TGG - chr5.4:15218416-15218435 MS.gene67551:CDS 30.0%
!! ATTTGTTATACTTCCTCAGA+GGG + chr5.4:15219449-15219468 None:intergenic 30.0%
!! CCTCCTAATTAATTTGTAGA+TGG + chr5.4:15217152-15217171 None:intergenic 30.0%
!! CTTTTGTCATTTGAAAAGGT+TGG - chr5.4:15219342-15219361 MS.gene67551:intron 30.0%
!!! ATGAAGGAAACTTTTTTGAG+AGG - chr5.4:15218760-15218779 MS.gene67551:intron 30.0%
AACATTATGAAGCTTGCAGA+TGG - chr5.4:15218168-15218187 MS.gene67551:intron 35.0%
AAGATGTGGAAATTCGACTT+AGG - chr5.4:15216464-15216483 MS.gene67551:intron 35.0%
AATGTCTTTGCAGGTAATGT+TGG - chr5.4:15220567-15220586 MS.gene67551:CDS 35.0%
ACTTCTAAGTCCTTAGAAAC+TGG - chr5.4:15217280-15217299 MS.gene67551:intron 35.0%
AGATATTTCCCGTTTCTTAG+AGG - chr5.4:15217895-15217914 MS.gene67551:intron 35.0%
AGCTTGAATATCTCGATTCA+TGG - chr5.4:15220540-15220559 MS.gene67551:CDS 35.0%
AGGAATGACAACATTAGAGA+GGG - chr5.4:15216416-15216435 MS.gene67551:intron 35.0%
AGGTGGTATAGAAATCAAAC+TGG - chr5.4:15220050-15220069 MS.gene67551:intron 35.0%
ATGTCTTTGCAGGTAATGTT+GGG - chr5.4:15220568-15220587 MS.gene67551:CDS 35.0%
ATTACCAGTGAATGCAATAC+GGG + chr5.4:15217331-15217350 None:intergenic 35.0%
CAAGAAAAAACTTGGATTGC+TGG - chr5.4:15216939-15216958 MS.gene67551:intron 35.0%
CCTAGCAAAATTTGAGTATG+AGG + chr5.4:15218053-15218072 None:intergenic 35.0%
CCTGCACAAAAAGAAAATCT+AGG - chr5.4:15219186-15219205 MS.gene67551:intron 35.0%
CGGAAATTTCCAATCATCTT+TGG - chr5.4:15217383-15217402 MS.gene67551:intron 35.0%
GAAAATATAGATAGGGCAGT+TGG - chr5.4:15220434-15220453 MS.gene67551:CDS 35.0%
GAAAGCAAATTAAACAGGAG+TGG - chr5.4:15218694-15218713 MS.gene67551:intron 35.0%
GAATACTTATTGGGTAGCAA+AGG + chr5.4:15219156-15219175 None:intergenic 35.0%
GAATGAAACAGCATTTGTGT+AGG - chr5.4:15219215-15219234 MS.gene67551:intron 35.0%
GGATAAGAGAACTTACTAGA+GGG - chr5.4:15216537-15216556 MS.gene67551:intron 35.0%
GTTATTAGGGAGAATACTGA+AGG - chr5.4:15216120-15216139 MS.gene67551:intron 35.0%
GTTTATCATCTGAGAAGCTA+AGG + chr5.4:15217309-15217328 None:intergenic 35.0%
TAGGAATGACAACATTAGAG+AGG - chr5.4:15216415-15216434 MS.gene67551:intron 35.0%
TATTAGGGAGAATACTGAAG+GGG - chr5.4:15216122-15216141 MS.gene67551:intron 35.0%
TCAAGTATCCCAAAGATGAT+TGG + chr5.4:15217395-15217414 None:intergenic 35.0%
TGCTTATAATATGGGACAGA+GGG - chr5.4:15217756-15217775 MS.gene67551:intron 35.0%
TGGATAAGAGAACTTACTAG+AGG - chr5.4:15216536-15216555 MS.gene67551:intron 35.0%
TGGCTCGTTGAATACTTATT+GGG + chr5.4:15219165-15219184 None:intergenic 35.0%
TTAAACAACAGAGAAACCCA+TGG + chr5.4:15218528-15218547 None:intergenic 35.0%
TTGCTTATAATATGGGACAG+AGG - chr5.4:15217755-15217774 MS.gene67551:intron 35.0%
! AATTGCTTGTACCTTTTGCA+TGG - chr5.4:15217025-15217044 MS.gene67551:intron 35.0%
! AGAATAGTCCTCTAAGAAAC+GGG + chr5.4:15217906-15217925 None:intergenic 35.0%
! CCTAGATTTTCTTTTTGTGC+AGG + chr5.4:15219189-15219208 None:intergenic 35.0%
! CCTCATACTCAAATTTTGCT+AGG - chr5.4:15218050-15218069 MS.gene67551:intron 35.0%
! CTCTGAGGAAGTATAACAAA+TGG - chr5.4:15219448-15219467 MS.gene67551:intron 35.0%
! CTTTTGCATGGTAGATAACT+CGG - chr5.4:15217037-15217056 MS.gene67551:intron 35.0%
! GTAGAAATTGTGATAACGTG+TGG - chr5.4:15216791-15216810 MS.gene67551:intron 35.0%
! TGCTTATAATTTAGGACGGA+GGG + chr5.4:15217465-15217484 None:intergenic 35.0%
! TTGCTTATAATTTAGGACGG+AGG + chr5.4:15217466-15217485 None:intergenic 35.0%
! TTTCTTCGGTGAAATGGATT+CGG - chr5.4:15217177-15217196 MS.gene67551:intron 35.0%
! TTTTGCATCGGAAATTTGTG+GGG - chr5.4:15217120-15217139 MS.gene67551:intron 35.0%
!! ATCATCTTTGGGATACTTGA+TGG - chr5.4:15217395-15217414 MS.gene67551:intron 35.0%
!! CATTTGTTATACTTCCTCAG+AGG + chr5.4:15219450-15219469 None:intergenic 35.0%
!! CTATCGTTGGTTCAATCAAA+AGG - chr5.4:15218663-15218682 MS.gene67551:intron 35.0%
!! GTGAAACGAGTCATTTTAGA+GGG - chr5.4:15220753-15220772 MS.gene67551:CDS 35.0%
!! TAAACACTATTTCTGCTTGC+AGG - chr5.4:15219647-15219666 MS.gene67551:intron 35.0%
!! TCATTTTAGAGGGTAAGTAC+AGG - chr5.4:15220763-15220782 MS.gene67551:CDS 35.0%
!! TGTGAAACGAGTCATTTTAG+AGG - chr5.4:15220752-15220771 MS.gene67551:CDS 35.0%
!!! CTTTTTTGAGAGGATAACGA+AGG - chr5.4:15218770-15218789 MS.gene67551:intron 35.0%
!!! GGATTTTTTGTTCTCGAAAG+CGG - chr5.4:15217212-15217231 MS.gene67551:intron 35.0%
!!! TTGCTGGCTTTTAGATGAAT+TGG - chr5.4:15216955-15216974 MS.gene67551:intron 35.0%
AAACAGCATTTGTGTAGGAC+AGG - chr5.4:15219220-15219239 MS.gene67551:intron 40.0%
AAATTCGACTTAGGCGGTTT+GGG - chr5.4:15216473-15216492 MS.gene67551:intron 40.0%
AACAGCATTTGTGTAGGACA+GGG - chr5.4:15219221-15219240 MS.gene67551:intron 40.0%
AAGATGTCTGAGCATCATTG+CGG + chr5.4:15220697-15220716 None:intergenic 40.0%
AATACTGAAGGGGAATATGC+TGG - chr5.4:15216132-15216151 MS.gene67551:intron 40.0%
ACAACATTAGAGAGGGAGTT+GGG - chr5.4:15216423-15216442 MS.gene67551:intron 40.0%
ACCATGACATCAAATTGCTC+AGG + chr5.4:15218294-15218313 None:intergenic 40.0%
ACCTTGACATTGTGACATGT+GGG - chr5.4:15218015-15218034 MS.gene67551:intron 40.0%
AGAAAAGAAAGCCAATCCTG+TGG - chr5.4:15220656-15220675 MS.gene67551:CDS 40.0%
AGAATTAGTGCTAACTGCCA+TGG - chr5.4:15218508-15218527 MS.gene67551:intron 40.0%
ATACTTCCTCAGAGGGATAA+AGG + chr5.4:15219442-15219461 None:intergenic 40.0%
ATCTTGAGGGATTGACTACT+AGG - chr5.4:15216076-15216095 MS.gene67551:intron 40.0%
ATGTGGAAATTCGACTTAGG+CGG - chr5.4:15216467-15216486 MS.gene67551:intron 40.0%
ATTCTTGGAATCTTGTCGAG+AGG - chr5.4:15218194-15218213 MS.gene67551:intron 40.0%
CACCTTGTTCAAATACAGCA+TGG + chr5.4:15220599-15220618 None:intergenic 40.0%
CATGGATGAAATGTCTTTGC+AGG - chr5.4:15220558-15220577 MS.gene67551:CDS 40.0%
CATTTATCCGGTGATTTCTG+TGG + chr5.4:15218565-15218584 None:intergenic 40.0%
CCACTGTTGATGTCCTTTAA+AGG - chr5.4:15217851-15217870 MS.gene67551:intron 40.0%
CGAGTTATCTACCATGCAAA+AGG + chr5.4:15217039-15217058 None:intergenic 40.0%
CGGTGATAGAGAATGCTATT+TGG - chr5.4:15217232-15217251 MS.gene67551:intron 40.0%
CTAGCCATTTGCTTATCTCT+GGG - chr5.4:15218719-15218738 MS.gene67551:intron 40.0%
CTCCTTACCAAAGAATCAAC+AGG + chr5.4:15216514-15216533 None:intergenic 40.0%
CTTGATTCCAGGATACTTTG+TGG + chr5.4:15218223-15218242 None:intergenic 40.0%
GAATTAGTGCTAACTGCCAT+GGG - chr5.4:15218509-15218528 MS.gene67551:intron 40.0%
GAATTTCCACATCTTCTCTC+CGG + chr5.4:15216459-15216478 None:intergenic 40.0%
GACCATGCTGTATTTGAACA+AGG - chr5.4:15220594-15220613 MS.gene67551:CDS 40.0%
GCTTGCAGATGGTTTATTCT+TGG - chr5.4:15218179-15218198 MS.gene67551:intron 40.0%
GTGGCTCGTTGAATACTTAT+TGG + chr5.4:15219166-15219185 None:intergenic 40.0%
TAAACCCGTATTGCATTCAC+TGG - chr5.4:15217324-15217343 MS.gene67551:intron 40.0%
TACTGCATCAACAACCTCTT+GGG + chr5.4:15220817-15220836 None:intergenic 40.0%
TAGCCATTTGCTTATCTCTG+GGG - chr5.4:15218720-15218739 MS.gene67551:intron 40.0%
TCATAACGACAGTGACCATA+TGG + chr5.4:15219849-15219868 None:intergenic 40.0%
TCCAATCGTTCAGCAAATAC+AGG + chr5.4:15220726-15220745 None:intergenic 40.0%
TCTAAGTCCTTAGAAACTGG+TGG - chr5.4:15217283-15217302 MS.gene67551:intron 40.0%
TCTGTTGAACTGGCACAATA+TGG + chr5.4:15219397-15219416 None:intergenic 40.0%
TGATTCTTTGGTAAGGAGAG+TGG - chr5.4:15216516-15216535 MS.gene67551:intron 40.0%
TGCTCTCTTTGTAGTTACTG+TGG - chr5.4:15218982-15219001 MS.gene67551:intron 40.0%
TGGGGGCAAAAACATAATGA+AGG - chr5.4:15218744-15218763 MS.gene67551:intron 40.0%
TGTCGTTATGAGATGTGTGA+GGG - chr5.4:15219858-15219877 MS.gene67551:intron 40.0%
TGTCTTTGCAGGTAATGTTG+GGG - chr5.4:15220569-15220588 MS.gene67551:CDS 40.0%
TTACTGCATCAACAACCTCT+TGG + chr5.4:15220818-15220837 None:intergenic 40.0%
TTCCTTACCAACATTTCCTG+CGG + chr5.4:15220625-15220644 None:intergenic 40.0%
TTCGAGAAATTCGAAGTGCA+TGG - chr5.4:15215892-15215911 MS.gene67551:CDS 40.0%
! ATCGATTCCATCACTTCAGA+TGG + chr5.4:15215934-15215953 None:intergenic 40.0%
! CAAGTTGACGGGATATGATT+AGG - chr5.4:15216396-15216415 MS.gene67551:intron 40.0%
! CCTTTAAAGGACATCAACAG+TGG + chr5.4:15217854-15217873 None:intergenic 40.0%
! GATTTTCTTTTTGTGCAGGG+TGG + chr5.4:15219185-15219204 None:intergenic 40.0%
! GGTTTGTTTGAAAGGTGGAT+TGG - chr5.4:15215966-15215985 MS.gene67551:intron 40.0%
! TCCTGTATTTGCTGAACGAT+TGG - chr5.4:15220722-15220741 MS.gene67551:CDS 40.0%
! TTCTTCGGTGAAATGGATTC+GGG - chr5.4:15217178-15217197 MS.gene67551:intron 40.0%
! TTGAGTCAAATAACGGGGAT+GGG - chr5.4:15220364-15220383 MS.gene67551:CDS 40.0%
!! ATATGCTGGTCTTGAACATG+AGG - chr5.4:15216146-15216165 MS.gene67551:intron 40.0%
!! ATGGTGGAAACTCAAGTTGA+CGG - chr5.4:15216384-15216403 MS.gene67551:intron 40.0%
!! GACCTGTTGATTCTTTGGTA+AGG - chr5.4:15216509-15216528 MS.gene67551:intron 40.0%
!! GAGAAGACCTGTTGATTCTT+TGG - chr5.4:15216504-15216523 MS.gene67551:intron 40.0%
AAGTACAGGACAAAGGACCT+TGG - chr5.4:15220777-15220796 MS.gene67551:CDS 45.0%
ACCCACATGTCACAATGTCA+AGG + chr5.4:15218019-15218038 None:intergenic 45.0%
ACTTCTGCCACAGAAATCAC+CGG - chr5.4:15218555-15218574 MS.gene67551:intron 45.0%
AGAGGGTAAGTACAGGACAA+AGG - chr5.4:15220770-15220789 MS.gene67551:CDS 45.0%
AGCCATTTGCTTATCTCTGG+GGG - chr5.4:15218721-15218740 MS.gene67551:intron 45.0%
ATGTGTACTCACTCATTGGC+TGG - chr5.4:15216825-15216844 MS.gene67551:CDS 45.0%
CAACATTAGAGAGGGAGTTG+GGG - chr5.4:15216424-15216443 MS.gene67551:intron 45.0%
CACCTTGACATTGTGACATG+TGG - chr5.4:15218014-15218033 MS.gene67551:intron 45.0%
CAGGTTACCCCCAATCTTTA+TGG - chr5.4:15219666-15219685 MS.gene67551:intron 45.0%
CTATCTCCTTTATCCCTCTG+AGG - chr5.4:15219433-15219452 MS.gene67551:intron 45.0%
CTGTCGTTATGAGATGTGTG+AGG - chr5.4:15219857-15219876 MS.gene67551:intron 45.0%
CTTGAACATGAGGTTGTTCC+CGG - chr5.4:15216156-15216175 MS.gene67551:intron 45.0%
GAAATTCGACTTAGGCGGTT+TGG - chr5.4:15216472-15216491 MS.gene67551:intron 45.0%
GACAACATTAGAGAGGGAGT+TGG - chr5.4:15216422-15216441 MS.gene67551:intron 45.0%
GACGATACATCACACATACG+AGG - chr5.4:15216633-15216652 MS.gene67551:intron 45.0%
GCCTGAGCAATTTGATGTCA+TGG - chr5.4:15218290-15218309 MS.gene67551:CDS 45.0%
GCTAGCCATTTGCTTATCTC+TGG - chr5.4:15218718-15218737 MS.gene67551:intron 45.0%
GCTCTCATTTGATTATGCCG+TGG - chr5.4:15219794-15219813 MS.gene67551:intron 45.0%
GTCGTTATGAGATGTGTGAG+GGG - chr5.4:15219859-15219878 MS.gene67551:intron 45.0%
TCGAATTTCTCGAAGTGCAC+TGG + chr5.4:15215886-15215905 None:intergenic 45.0%
TCGTTATGAGATGTGTGAGG+GGG - chr5.4:15219860-15219879 MS.gene67551:intron 45.0%
TGAGCATCATTGCGGAAGAA+AGG + chr5.4:15220689-15220708 None:intergenic 45.0%
TGATGCCATCACTGTTTCCA+AGG + chr5.4:15219247-15219266 None:intergenic 45.0%
TTCCGCAGGAAATGTTGGTA+AGG - chr5.4:15220620-15220639 MS.gene67551:CDS 45.0%
TTCCTCAACAGGTTGCAGTA+TGG - chr5.4:15220086-15220105 MS.gene67551:intron 45.0%
! AAGGTGTTTGAGGAGGTTTG+TGG + chr5.4:15215707-15215726 None:intergenic 45.0%
! AGCGATTCCATCTGAAGTGA+TGG - chr5.4:15215924-15215943 MS.gene67551:CDS 45.0%
! AGTTTTCTCGTCAGTCGTTG+AGG - chr5.4:15220307-15220326 MS.gene67551:intron 45.0%
! ATTTGCTTATCTCTGGGGGT+GGG - chr5.4:15218725-15218744 MS.gene67551:intron 45.0%
! GTTGAGTCAAATAACGGGGA+TGG - chr5.4:15220363-15220382 MS.gene67551:CDS 45.0%
! TGGAGATAAGGTGTTTGAGG+AGG + chr5.4:15215714-15215733 None:intergenic 45.0%
! TGTGTACTCACTCATTGGCT+GGG - chr5.4:15216826-15216845 MS.gene67551:CDS 45.0%
!! CTAGACTCAACAGTTCTGAG+TGG + chr5.4:15219892-15219911 None:intergenic 45.0%
!! GCTTAATTTGCAGCTGAGGA+AGG - chr5.4:15216017-15216036 MS.gene67551:intron 45.0%
!! GGGGTAATGGAGTTGTCAAA+TGG - chr5.4:15220128-15220147 MS.gene67551:intron 45.0%
!! GTTCGCTTAATTTGCAGCTG+AGG - chr5.4:15216013-15216032 MS.gene67551:intron 45.0%
!! TGGATTCGGGTTGCAAGTTT+AGG - chr5.4:15217191-15217210 MS.gene67551:intron 45.0%
!! TGGTGGAAACTCAAGTTGAC+GGG - chr5.4:15216385-15216404 MS.gene67551:intron 45.0%
!! ATATAAAAGAATTAAATATA+CGG + chr5.4:15218847-15218866 None:intergenic 5.0%
ACAGGACAAAGGACCTTGGA+GGG - chr5.4:15220781-15220800 MS.gene67551:CDS 50.0%
ACCAAGAGAACAGGCAGGAA+GGG + chr5.4:15219508-15219527 None:intergenic 50.0%
ATTTGTGTAGGACAGGGCCT+TGG - chr5.4:15219227-15219246 MS.gene67551:intron 50.0%
CAAATGCCGGAGAGAAGATG+TGG - chr5.4:15216450-15216469 MS.gene67551:intron 50.0%
CACCCCCAGAGATAAGCAAA+TGG + chr5.4:15218726-15218745 None:intergenic 50.0%
CATTACTTGCTCAACAGCGC+CGG + chr5.4:15215848-15215867 None:intergenic 50.0%
CGCAATGTAACCCTAATCCC+CGG - chr5.4:15215799-15215818 MS.gene67551:CDS 50.0%
CGGGGATTAGGGTTACATTG+CGG + chr5.4:15215801-15215820 None:intergenic 50.0%
CTCAACAGGTTGCAGTATGG+AGG - chr5.4:15220089-15220108 MS.gene67551:intron 50.0%
CTCCATACTGCAACCTGTTG+AGG + chr5.4:15220091-15220110 None:intergenic 50.0%
CTTCCACAAATTCAGCCCAC+AGG + chr5.4:15220474-15220493 None:intergenic 50.0%
CTTGAGACTCTCAACGACAC+CGG + chr5.4:15216178-15216197 None:intergenic 50.0%
CTTGTTGCAAATACAGCGGC+AGG - chr5.4:15219693-15219712 MS.gene67551:intron 50.0%
GAACTAACACCACCACCCAT+CGG + chr5.4:15215997-15216016 None:intergenic 50.0%
GAGAACTTACTAGAGGGCAG+AGG - chr5.4:15216543-15216562 MS.gene67551:intron 50.0%
GATTAGGGTTACATTGCGGG+GGG + chr5.4:15215797-15215816 None:intergenic 50.0%
GCTAAGGCCACCAGTTTCTA+AGG + chr5.4:15217293-15217312 None:intergenic 50.0%
GGATTAGGGTTACATTGCGG+GGG + chr5.4:15215798-15215817 None:intergenic 50.0%
GGGATTAGGGTTACATTGCG+GGG + chr5.4:15215799-15215818 None:intergenic 50.0%
GGGGATTAGGGTTACATTGC+GGG + chr5.4:15215800-15215819 None:intergenic 50.0%
GTCCTTTGTGTTGGACCTGT+GGG - chr5.4:15220456-15220475 MS.gene67551:CDS 50.0%
TACAGGACAAAGGACCTTGG+AGG - chr5.4:15220780-15220799 MS.gene67551:CDS 50.0%
TCAAGTGGCACCAAGAGAAC+AGG + chr5.4:15219517-15219536 None:intergenic 50.0%
TGCATCAACAACCTCTTGGG+TGG + chr5.4:15220814-15220833 None:intergenic 50.0%
TTGAGACTCTCAACGACACC+GGG + chr5.4:15216177-15216196 None:intergenic 50.0%
! CATTTGCTTATCTCTGGGGG+TGG - chr5.4:15218724-15218743 MS.gene67551:intron 50.0%
! CTGTGGGCTGAATTTGTGGA+AGG - chr5.4:15220472-15220491 MS.gene67551:CDS 50.0%
! GAGGTTGCCACAAAGTATCC+TGG - chr5.4:15218213-15218232 MS.gene67551:intron 50.0%
! GCGTGGAGATAAGGTGTTTG+AGG + chr5.4:15215717-15215736 None:intergenic 50.0%
! GTCAAATAACGGGGATGGGT+TGG - chr5.4:15220368-15220387 MS.gene67551:CDS 50.0%
! TTTGAACAAGGTGCTTCCGC+AGG - chr5.4:15220606-15220625 MS.gene67551:CDS 50.0%
! TTTGCTTATCTCTGGGGGTG+GGG - chr5.4:15218726-15218745 MS.gene67551:intron 50.0%
!! AAGGAGAAGTGCCACAGGAT+TGG + chr5.4:15220670-15220689 None:intergenic 50.0%
!! GAAGAAAGGAGAAGTGCCAC+AGG + chr5.4:15220675-15220694 None:intergenic 50.0%
ACCCTTCCTGCCTGTTCTCT+TGG - chr5.4:15219504-15219523 MS.gene67551:intron 55.0%
AGCCCACAGGTCCAACACAA+AGG + chr5.4:15220461-15220480 None:intergenic 55.0%
AGGCAACAGCAGCTGTTGTG+GGG - chr5.4:15220109-15220128 MS.gene67551:intron 55.0%
CACCAAGAGAACAGGCAGGA+AGG + chr5.4:15219509-15219528 None:intergenic 55.0%
CAGCAGCTGTTGTGGGGTAA+TGG - chr5.4:15220115-15220134 MS.gene67551:intron 55.0%
CAGGGCCTTGGAAACAGTGA+TGG - chr5.4:15219239-15219258 MS.gene67551:intron 55.0%
CGGCGCTGTTGAGCAAGTAA+TGG - chr5.4:15215846-15215865 MS.gene67551:CDS 55.0%
GAGGCAACAGCAGCTGTTGT+GGG - chr5.4:15220108-15220127 MS.gene67551:intron 55.0%
GCATGTAGGTTACGGTACGG+GGG + chr5.4:15215756-15215775 None:intergenic 55.0%
GGAGTTGGGGTAGCAAATGC+CGG - chr5.4:15216437-15216456 MS.gene67551:intron 55.0%
GGCATGTAGGTTACGGTACG+GGG + chr5.4:15215757-15215776 None:intergenic 55.0%
GGGCAGTTGGTCCTTTGTGT+TGG - chr5.4:15220447-15220466 MS.gene67551:CDS 55.0%
GGGCATGTAGGTTACGGTAC+GGG + chr5.4:15215758-15215777 None:intergenic 55.0%
GGGGCATGTAGGTTACGGTA+CGG + chr5.4:15215759-15215778 None:intergenic 55.0%
GGTCCTTTGTGTTGGACCTG+TGG - chr5.4:15220455-15220474 MS.gene67551:CDS 55.0%
GGTGCTTCCGCAGGAAATGT+TGG - chr5.4:15220615-15220634 MS.gene67551:CDS 55.0%
TTACTAGAGGGCAGAGGCAG+AGG - chr5.4:15216549-15216568 MS.gene67551:intron 55.0%
! AATACAGCGGCAGGCATTGC+TGG - chr5.4:15219702-15219721 MS.gene67551:intron 55.0%
! GGACCTGTGGGCTGAATTTG+TGG - chr5.4:15220468-15220487 MS.gene67551:CDS 55.0%
! TTGCTTATCTCTGGGGGTGG+GGG - chr5.4:15218727-15218746 MS.gene67551:intron 55.0%
!! CGGCAGTGCTGTTTGTAGGA+TGG - chr5.4:15220401-15220420 MS.gene67551:CDS 55.0%
!! CGGTGTCGTTGAGAGTCTCA+AGG - chr5.4:15216176-15216195 MS.gene67551:intron 55.0%
AGGGACAAGCACCACCCAAG+AGG - chr5.4:15220800-15220819 MS.gene67551:CDS 60.0%
CTAATCCCCGGCGACGGAAT+CGG - chr5.4:15215811-15215830 MS.gene67551:CDS 60.0%
GATTCCGTCGCCGGGGATTA+GGG + chr5.4:15215812-15215831 None:intergenic 60.0%
GGAATCGGCCCTCTCGTAAC+CGG - chr5.4:15215826-15215845 MS.gene67551:CDS 60.0%
GGAGGCAACAGCAGCTGTTG+TGG - chr5.4:15220107-15220126 MS.gene67551:intron 60.0%
GTAACCCTAATCCCCGGCGA+CGG - chr5.4:15215805-15215824 MS.gene67551:CDS 60.0%
GTAGGTTACGGTACGGGGGT+GGG + chr5.4:15215752-15215771 None:intergenic 60.0%
GTGGCACCAAGAGAACAGGC+AGG + chr5.4:15219513-15219532 None:intergenic 60.0%
TGTAGGTTACGGTACGGGGG+TGG + chr5.4:15215753-15215772 None:intergenic 60.0%
!! AACGGGGATGGGTTGGAGTC+TGG - chr5.4:15220375-15220394 MS.gene67551:CDS 60.0%
!! AGGTGGATTGGCGACTCCGA+TGG - chr5.4:15215978-15215997 MS.gene67551:intron 60.0%
!! CAACAGCGCCGGTTACGAGA+GGG + chr5.4:15215837-15215856 None:intergenic 60.0%
!! GATGGGTTGGAGTCTGGTGG+CGG - chr5.4:15220381-15220400 MS.gene67551:CDS 60.0%
!! GGTGGATTGGCGACTCCGAT+GGG - chr5.4:15215979-15215998 MS.gene67551:intron 60.0%
!! GTGGCGGCAGTGCTGTTTGT+AGG - chr5.4:15220397-15220416 MS.gene67551:CDS 60.0%
!! TCAACAGCGCCGGTTACGAG+AGG + chr5.4:15215838-15215857 None:intergenic 60.0%
!! TGGAGGCACTGGTGTCATGC+CGG - chr5.4:15219722-15219741 MS.gene67551:intron 60.0%
ATTGCGGGGGGTTCCGTCTC+CGG + chr5.4:15215785-15215804 None:intergenic 65.0%
CGATTCCGTCGCCGGGGATT+AGG + chr5.4:15215813-15215832 None:intergenic 65.0%
GGGGCGGGGCATGTAGGTTA+CGG + chr5.4:15215764-15215783 None:intergenic 65.0%
GGGTGGTGCTTGTCCCTCCA+AGG + chr5.4:15220797-15220816 None:intergenic 65.0%
GTAACCTACATGCCCCGCCC+CGG - chr5.4:15215763-15215782 MS.gene67551:CDS 65.0%
TTACGGTACGGGGGTGGGTG+AGG + chr5.4:15215747-15215766 None:intergenic 65.0%
TTGGCGACTCCGATGGGTGG+TGG - chr5.4:15215985-15216004 MS.gene67551:intron 65.0%
! ACAGCGGCAGGCATTGCTGG+AGG - chr5.4:15219705-15219724 MS.gene67551:intron 65.0%
! GCAGGCATTGCTGGAGGCAC+TGG - chr5.4:15219711-15219730 MS.gene67551:intron 65.0%
! GGATTGGCGACTCCGATGGG+TGG - chr5.4:15215982-15216001 MS.gene67551:intron 65.0%
! GGTGGTGGCGCGTGGAGATA+AGG + chr5.4:15215726-15215745 None:intergenic 65.0%
!! GGAGGCACTGGTGTCATGCC+GGG - chr5.4:15219723-15219742 MS.gene67551:intron 65.0%
!! GGGGATGGGTTGGAGTCTGG+TGG - chr5.4:15220378-15220397 MS.gene67551:CDS 65.0%
TACATGCCCCGCCCCGGAGA+CGG - chr5.4:15215769-15215788 MS.gene67551:CDS 70.0%
TACGGGGGTGGGTGAGGTGG+TGG + chr5.4:15215741-15215760 None:intergenic 70.0%
TTGCGGGGGGTTCCGTCTCC+GGG + chr5.4:15215784-15215803 None:intergenic 70.0%
! AGAGGGCCGATTCCGTCGCC+GGG + chr5.4:15215820-15215839 None:intergenic 70.0%
! GAGAGGGCCGATTCCGTCGC+CGG + chr5.4:15215821-15215840 None:intergenic 70.0%
!! GGCACTGGTGTCATGCCGGG+AGG - chr5.4:15219726-15219745 MS.gene67551:intron 70.0%
CGGTACGGGGGTGGGTGAGG+TGG + chr5.4:15215744-15215763 None:intergenic 75.0%
GTCTCCGGGGCGGGGCATGT+AGG + chr5.4:15215770-15215789 None:intergenic 75.0%
TGCGGGGGGTTCCGTCTCCG+GGG + chr5.4:15215783-15215802 None:intergenic 75.0%
! GAGGGCCGATTCCGTCGCCG+GGG + chr5.4:15215819-15215838 None:intergenic 75.0%
! GTGGGTGAGGTGGTGGCGCG+TGG + chr5.4:15215734-15215753 None:intergenic 75.0%
! GGGGGGTTCCGTCTCCGGGG+CGG + chr5.4:15215780-15215799 None:intergenic 80.0%
! GGGGGTTCCGTCTCCGGGGC+GGG + chr5.4:15215779-15215798 None:intergenic 80.0%
! GGGGTTCCGTCTCCGGGGCG+GGG + chr5.4:15215778-15215797 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 15215688 15220854 15215688 ID=MS.gene67551
chr5.4 mRNA 15215688 15220854 15215688 ID=MS.gene67551.t1;Parent=MS.gene67551
chr5.4 exon 15220345 15220854 15220345 ID=MS.gene67551.t1.exon1;Parent=MS.gene67551.t1
chr5.4 CDS 15220345 15220854 15220345 ID=cds.MS.gene67551.t1;Parent=MS.gene67551.t1
chr5.4 exon 15218231 15218470 15218231 ID=MS.gene67551.t1.exon2;Parent=MS.gene67551.t1
chr5.4 CDS 15218231 15218470 15218231 ID=cds.MS.gene67551.t1;Parent=MS.gene67551.t1
chr5.4 exon 15216795 15216873 15216795 ID=MS.gene67551.t1.exon3;Parent=MS.gene67551.t1
chr5.4 CDS 15216795 15216873 15216795 ID=cds.MS.gene67551.t1;Parent=MS.gene67551.t1
chr5.4 exon 15215688 15215962 15215688 ID=MS.gene67551.t1.exon4;Parent=MS.gene67551.t1
chr5.4 CDS 15215688 15215962 15215688 ID=cds.MS.gene67551.t1;Parent=MS.gene67551.t1
Gene Sequence

>MS.gene67551

ATGGCGACGAGAAAATCCACAAACCTCCTCAAACACCTTATCTCCACGCGCCACCACCTCACCCACCCCCGTACCGTAACCTACATGCCCCGCCCCGGAGACGGAACCCCCCGCAATGTAACCCTAATCCCCGGCGACGGAATCGGCCCTCTCGTAACCGGCGCTGTTGAGCAAGTAATGGAAGCGATGCATGCGCCAGTGCACTTCGAGAAATTCGAAGTGCATGGCAATATGAAAGCGATTCCATCTGAAGTGATGGAATCGATTAAGAAGAATAAGGTTTGTTTGAAAGGTGGATTGGCGACTCCGATGGGTGGTGGTGTTAGTTCGCTTAATTTGCAGCTGAGGAAGGAGCTTGATCTTTATGCTTCGCTTGTCAATTGCTTTAATCTTGAGGGATTGACTACTAGGCATGATAATGTTGATATTGTTGTTATTAGGGAGAATACTGAAGGGGAATATGCTGGTCTTGAACATGAGGTTGTTCCCGGTGTCGTTGAGAGTCTCAAGGTATTCAAATTATGATCAATTTATTATACAAATATTACATTGTGCGTGTTTTGTTAGTAATTTTATTTATTAAATTAATTAATTAATGGAAGATACATTTGATGATCAAACTTACTAGCGAAAGACATATTCAATGACCAAACTATCACATTTGAATATTAATTTTGTAATCTTGATACAATTAAGATGGTGGAAACTCAAGTTGACGGGATATGATTAGGAATGACAACATTAGAGAGGGAGTTGGGGTAGCAAATGCCGGAGAGAAGATGTGGAAATTCGACTTAGGCGGTTTGGGTGTGTAGAGAGAAGACCTGTTGATTCTTTGGTAAGGAGAGTGGATAAGAGAACTTACTAGAGGGCAGAGGCAGAGGAAGACCTAGAGAACCATAAGAGAAATTGTTAAGAAAGATCTAGAGATTAATGAGTTATAGTGACGATACATCACACATACGAGGACTAACGTGATTTTTTATCCCTTATTAACTCACGACAATAAACTTACAATCAGAATAATTTAGAAACGTTACAGTTAAGTGATTTTTCGGTTGTATTTTTGTTAATTCAAACTTGTTGTAATCAGTAATTCACTTGTAGAAATTGTGATAACGTGTGGAGTTTGTTTTTATGTGTACTCACTCATTGGCTGGGCTTTGAAATTTGAATCATTTCATGGCTAGGTTTGCTGAATTGAGTAGTGACTAGTTTGTAAGCATTGTAATATTTGATCTATTCATCTCACAAGAAAAAACTTGGATTGCTGGCTTTTAGATGAATTGGAAAGCAGTGATGTATAATTTGCGTGTTTATGGTGAAGAATCTTGAAGAATTGCTTGTACCTTTTGCATGGTAGATAACTCGGAATATACTTTGTATTTAACAGGTCGTTACACTTATTTTGCGTCACAAGTTGTTAGACATATTTTGCATCGGAAATTTGTGGGGAAATTCCCATCTACAAATTAATTAGGAGGTTTAATTTCTTCGGTGAAATGGATTCGGGTTGCAAGTTTAGGATTTTTTGTTCTCGAAAGCGGTGATAGAGAATGCTATTTGGTAATATGCGGGTTTATTTTACTTATACTTCTAAGTCCTTAGAAACTGGTGGCCTTAGCTTCTCAGATGATAAACCCGTATTGCATTCACTGGTAATATTCGAATTTGAATATAATACATTCATTCTTACGGAAATTTCCAATCATCTTTGGGATACTTGATGGAAATGCTAACTAAAAGAAAAGTAGTGGTGCATAGTAGTTATACTCCCTCCGTCCTAAATTATAAGCAAAAAAAACTCATTTTCTTTGTCCCAAATTATAAGCAAAAAAGACCAACTTTTATCATATTTAATTATGTTATTTCAAAAAATTATCTTTTCCAAAGGAAAATTAAATGCAAAGTGCATTCAATTTGCTTTCTCTTTCATTTTCTCAATAACCAATAACCAATGGAAATTGTTTTTACATCTTCCTATAAAACTTATTTCAAGGATAACACAAGAAACTATGTTGCAAACTACTATGTTTTAGTTTTCTTAATAAATGTGATTATTTTTTTTTGCTTATAATATGGGACAGAGGGAGTATTAATTAAGAATATTAGTTTTTAATTTTTTTATTTCTTTTGTATGCATTGTGTTGTGTACTTGCTGCTCCACTGTTGATGTCCTTTAAAGGTTGTTTATTGTAATCATGCTCAGATATTTCCCGTTTCTTAGAGGACTATTCTTTAAATGTAGAGGTTTTATTCCTTTATATTTGCTGTATAGATAGATTTGTATTGTAATCTTTAAATGTTATATATCTCATGATGTTAGCACCTTGACATTGTGACATGTGGGTTTTTGTTTGCACCTCATACTCAAATTTTGCTAGGTAATAACAAAGTTCTGTTCAGAGCGCATTGCTAAATATGCTTTCGAGTATGCGTATCTAAATAACAGAAAGAAGGTGACTGCTGTGCACAAAGCAAACATTATGAAGCTTGCAGATGGTTTATTCTTGGAATCTTGTCGAGAGGTTGCCACAAAGTATCCTGGAATCAAGTATAATGAAATTATTGTAGACAATTGTTGCATGCAGCTTGTTTCAAAGCCTGAGCAATTTGATGTCATGGTATGTATATTTATAATTTGACCCTGAATCCCAATTATTTATCCACTTTTGGCTGATATGTTTATGAGTCCAGCACTTGTTTAAACATTTTTTTAAATAAAAAAATTTGGTGCTATTAGTTTGTTGGTTAAATGAGCAACTTTTTCAATTAAATTGTGGCCCATGTGTCTGTTTATATTTCCTTTTATTACTTTGGAGAATTAGTGCTAACTGCCATGGGTTTCTCTGTTGTTTAATTTGTTGACTTCTGCCACAGAAATCACCGGATAAATGAGTAGCATTGTAATAAACTATAAACAATTATAGCCAAAGATAATTATTTGAGTCTTTACTTCTTTTGTATGAGATTTTCTATCGTTGGTTCAATCAAAAGGTTATTTTTGAAAGCAAATTAAACAGGAGTGGAGCTAGCCATTTGCTTATCTCTGGGGGTGGGGGCAAAAACATAATGAAGGAAACTTTTTTGAGAGGATAACGAAGGAAACTTATTTCTCAAATAAACATATCAAACTTAATCAAAAATCAAAAGATTCCGTATATTTAATTCTTTTATATCATATGTAAATTAAAAGAAATAAAAAAGAAATCATTCAATAGTGATTTTGAAAAGTTGAGTTGATAATTCTTTTATATCATCTGTTTTGTTTGTCTAGAAAAATTGAATTGCTTATGCTCTCTTTGTAGTTACTGTGGAGATTATAAGAATCAAAACAAGACAAATCAATCTATCAATTAAGTTTTGTTTTACCTTTCTGTTTCTGCTAATTTGAGTAATTTCTGGTACAAATTGAGTGCTGCAAGTAATGTTTTAGTTATCAGATAAAGTCTTCTTTTTTGTTAGCCTTTGCTACCCAATAAGTATTCAACGAGCCACCCTGCACAAAAAGAAAATCTAGGAAGAAGGAATGAAACAGCATTTGTGTAGGACAGGGCCTTGGAAACAGTGATGGCATCATAATTTTTTTAACATAGGTTCCCTAGTTTAATCTAATTATACGAGAGGATATATGATAAATAAGTTATTAATTAACTTTTGTCATTTGAAAAGGTTGGATGTTGTATTTAATTAGGTTTTGATATGGCCATATTGTGCCAGTTCAACAGAAATAGATACTAGTTAGCTATCTCCTTTATCCCTCTGAGGAAGTATAACAAATGGATTTGTATTTGTAATAATGAATACAAAAGGGGTACCCTTCCTGCCTGTTCTCTTGGTGCCACTTGAAATTAAGAAAACATTGAGGAGTTTGTTGATTAACACGACAATTCTTTCTTGCTAGTAATTGATTGGTCTTTTTCCCAGTCATTTTGCTTTTGATTTTAAATTCAAAGTCATAAACACTATTTCTGCTTGCAGGTTACCCCCAATCTTTATGGAAATCTTGTTGCAAATACAGCGGCAGGCATTGCTGGAGGCACTGGTGTCATGCCGGGAGGTATAAATATTACTAATAACTATCGCTAATGTGTTGAAACTCTAGAGCTCTCATTTGATTATGCCGTGGCATTTTTCTTATCAAATAGTATCTTGCTTCCATATGGTCACTGTCGTTATGAGATGTGTGAGGGGGTGACTACCACTCAGAACTGTTGAGTCTAGATTTAGAGTGTATTAATCATGTTTGTCTAGTTCTTTCAATCAATTATTTCAGGAACATTTTTCATTCGTTGAAAACTCTGCCAAAATATAGTGATTGATTAAATTAGAGATTGTATATTCAATGAAAACAAAAAATAGAGGTGGTATAGAAATCAAACTGGAAATTCATTTATCTTCCTCAACAGGTTGCAGTATGGAGGCAACAGCAGCTGTTGTGGGGTAATGGAGTTGTCAAATGGTAGTGACAACATATAATTGGCATTTTACTCTTCTAAAGTGAACATTTCACTTTAGATGATAAAGTAAGAAATCTCAACCATTAATGAAAAATCAACCTTCAATATTTTAGCAGTGTATAGTAAGTAAACTATGAATGTGTTGAAATATCGACTATAAGTTTTCTCGTCAGTCGTTGAGGTCTTGTTGTACTCTAAAATAAGAGTTTGCTTTAGTTGAGTCAAATAACGGGGATGGGTTGGAGTCTGGTGGCGGCAGTGCTGTTTGTAGGATGGAGATTCTAATGAAAATATAGATAGGGCAGTTGGTCCTTTGTGTTGGACCTGTGGGCTGAATTTGTGGAAGGTTATCTAGATAGAAGTGATTGTTGAATAAAGCCACTTTAACCTTAAGCTTGAATATCTCGATTCATGGATGAAATGTCTTTGCAGGTAATGTTGGGGCTGACCATGCTGTATTTGAACAAGGTGCTTCCGCAGGAAATGTTGGTAAGGAAAAAGTAGTACAAGAAAAGAAAGCCAATCCTGTGGCACTTCTCCTTTCTTCCGCAATGATGCTCAGACATCTTCAGTTTCCTGTATTTGCTGAACGATTGGAAAGTGCTGTGAAACGAGTCATTTTAGAGGGTAAGTACAGGACAAAGGACCTTGGAGGGACAAGCACCACCCAAGAGGTTGTTGATGCAGTAATAGATGCATTGCAGTAA

Protein sequence

>MS.gene67551.t1

MATRKSTNLLKHLISTRHHLTHPRTVTYMPRPGDGTPRNVTLIPGDGIGPLVTGAVEQVMEAMHAPVHFEKFEVHGNMKAIPSEVMESIKKNKVCLKGGLATPMGGGVSSLNLQLRKELDLYASLVNCFNLEGLTTRHDNVDIVVIRENTEGEYAGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVATKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGKEKVVQEKKANPVALLLSSAMMLRHLQFPVFAERLESAVKRVILEGKYRTKDLGGTSTTQEVVDAVIDALQ