Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65084.t1 | RHN45970.1 | 91.8 | 208 | 17 | 0 | 1 | 208 | 41 | 248 | 6.30E-102 | 380.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65084.t1 | Q9FKB5 | 47.3 | 226 | 98 | 8 | 1 | 209 | 1 | 222 | 9.3e-38 | 158.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65084.t1 | A0A072TZ90 | 91.8 | 208 | 17 | 0 | 1 | 208 | 1 | 208 | 4.5e-102 | 380.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050319 | MS.gene65084 | 0.801173 | 1.02E-48 | -1.69E-46 |
| MS.gene050330 | MS.gene65084 | 0.801492 | 8.78E-49 | -1.69E-46 |
| MS.gene050787 | MS.gene65084 | -0.843093 | 1.73E-58 | -1.69E-46 |
| MS.gene050807 | MS.gene65084 | -0.81882 | 1.61E-52 | -1.69E-46 |
| MS.gene05119 | MS.gene65084 | 0.804028 | 2.63E-49 | -1.69E-46 |
| MS.gene051265 | MS.gene65084 | -0.815651 | 8.29E-52 | -1.69E-46 |
| MS.gene051719 | MS.gene65084 | -0.80356 | 3.29E-49 | -1.69E-46 |
| MS.gene052358 | MS.gene65084 | 0.812619 | 3.87E-51 | -1.69E-46 |
| MS.gene052361 | MS.gene65084 | 0.828958 | 6.73E-55 | -1.69E-46 |
| MS.gene052673 | MS.gene65084 | 0.814948 | 1.19E-51 | -1.69E-46 |
| MS.gene053054 | MS.gene65084 | 0.8274 | 1.60E-54 | -1.69E-46 |
| MS.gene053221 | MS.gene65084 | -0.814661 | 1.38E-51 | -1.69E-46 |
| MS.gene054291 | MS.gene65084 | 0.818454 | 1.94E-52 | -1.69E-46 |
| MS.gene055356 | MS.gene65084 | -0.808155 | 3.56E-50 | -1.69E-46 |
| MS.gene055357 | MS.gene65084 | -0.810435 | 1.15E-50 | -1.69E-46 |
| MS.gene055358 | MS.gene65084 | -0.813033 | 3.14E-51 | -1.69E-46 |
| MS.gene056069 | MS.gene65084 | 0.813066 | 3.09E-51 | -1.69E-46 |
| MS.gene05954 | MS.gene65084 | -0.804895 | 1.73E-49 | -1.69E-46 |
| MS.gene059896 | MS.gene65084 | 0.822264 | 2.60E-53 | -1.69E-46 |
| MS.gene060137 | MS.gene65084 | 0.856331 | 3.46E-62 | -1.69E-46 |
| MS.gene060322 | MS.gene65084 | -0.802428 | 5.64E-49 | -1.69E-46 |
| MS.gene060634 | MS.gene65084 | 0.864239 | 1.40E-64 | -1.69E-46 |
| MS.gene061040 | MS.gene65084 | 0.831306 | 1.80E-55 | -1.69E-46 |
| MS.gene061114 | MS.gene65084 | 0.824268 | 8.85E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65084.t1 | MTR_7g057920 | 91.827 | 208 | 17 | 0 | 1 | 208 | 1 | 208 | 4.29e-143 | 397 |
| MS.gene65084.t1 | MTR_7g058390 | 90.865 | 208 | 18 | 1 | 1 | 208 | 1 | 207 | 3.44e-141 | 392 |
| MS.gene65084.t1 | MTR_1g072860 | 33.745 | 243 | 106 | 10 | 1 | 209 | 1 | 222 | 2.11e-23 | 93.6 |
| MS.gene65084.t1 | MTR_5g017600 | 30.808 | 198 | 105 | 8 | 25 | 209 | 5 | 183 | 6.58e-17 | 75.5 |
| MS.gene65084.t1 | MTR_4g086450 | 63.158 | 38 | 14 | 0 | 168 | 205 | 113 | 150 | 7.23e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65084.t1 | AT5G48820 | 47.577 | 227 | 96 | 9 | 1 | 209 | 1 | 222 | 8.51e-52 | 166 |
| MS.gene65084.t1 | AT5G48820 | 44.262 | 244 | 97 | 9 | 1 | 209 | 1 | 240 | 4.30e-49 | 160 |
| MS.gene65084.t1 | AT2G32710 | 40.526 | 190 | 82 | 5 | 47 | 207 | 97 | 284 | 1.07e-31 | 117 |
| MS.gene65084.t1 | AT2G32710 | 39.896 | 193 | 82 | 5 | 47 | 207 | 97 | 287 | 1.74e-31 | 116 |
| MS.gene65084.t1 | AT3G24810 | 34.348 | 230 | 89 | 8 | 1 | 209 | 1 | 189 | 8.72e-29 | 106 |
| MS.gene65084.t1 | AT1G49620 | 55.319 | 47 | 21 | 0 | 163 | 209 | 149 | 195 | 9.00e-14 | 67.4 |
| MS.gene65084.t1 | AT1G49620 | 55.319 | 47 | 21 | 0 | 163 | 209 | 154 | 200 | 9.29e-14 | 67.4 |
Find 71 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGATTCGGCGGAGATTTC+TGG | 0.134094 | 7.1:-43368621 | None:intergenic |
| GCAGCAACAAGCATTATTTA+TGG | 0.177822 | 7.1:+43371316 | MS.gene65084:CDS |
| GGCGACATCGCCGGTGGTTT+TGG | 0.265337 | 7.1:-43368527 | None:intergenic |
| CTGCTCCCGTTGGAAATTCT+AGG | 0.303380 | 7.1:+43368722 | MS.gene65084:CDS |
| CTTTGTCTTGTGGTTGAACC+AGG | 0.312665 | 7.1:-43371209 | None:intergenic |
| GCACACCTTGTAGTTTAATC+AGG | 0.331031 | 7.1:+43371165 | MS.gene65084:CDS |
| TTCGCTGTTGAAGGTTCTTT+TGG | 0.335129 | 7.1:+43368817 | MS.gene65084:CDS |
| TTTCTGGAGAGCAAGGGTTT+TGG | 0.359471 | 7.1:-43368605 | None:intergenic |
| GATGGTGATTTCGCTGTTGA+AGG | 0.380464 | 7.1:+43368808 | MS.gene65084:CDS |
| TTCTAGGCTTCGTGAATGTT+CGG | 0.405692 | 7.1:+43368738 | MS.gene65084:CDS |
| GAAAATTTCGCAGAGATTGA+TGG | 0.418505 | 7.1:+43368841 | MS.gene65084:CDS |
| GGCTGGTCCTAGGGAAGTAC+AGG | 0.433584 | 7.1:-43371585 | None:intergenic |
| CCTTACGGAGGCGGCGGCTA+CGG | 0.433971 | 7.1:-43368669 | None:intergenic |
| GGAGGCGGCGGCTACGGAGC+TGG | 0.441102 | 7.1:-43368663 | None:intergenic |
| CGATGTCGCCGCCGTAATCA+TGG | 0.456695 | 7.1:+43368540 | MS.gene65084:CDS |
| TTGCGAGGTGGAAGCGGCGG+AGG | 0.461128 | 7.1:-43368694 | None:intergenic |
| CAGAGATTGATGGTAGAGAT+AGG | 0.461294 | 7.1:+43368851 | MS.gene65084:CDS |
| ACACCACCGCCGTTGGTGTC+CGG | 0.463024 | 7.1:+43368575 | MS.gene65084:CDS |
| CCAGGGGTATGAATGATACT+TGG | 0.467708 | 7.1:-43371191 | None:intergenic |
| TCATCCACTTCATAAGTTGT+TGG | 0.469285 | 7.1:-43371272 | None:intergenic |
| CCGTAGCCGCCGCCTCCGTA+AGG | 0.481312 | 7.1:+43368669 | MS.gene65084:CDS |
| GCGGAGGAACCTTACGGAGG+CGG | 0.492682 | 7.1:-43368678 | None:intergenic |
| TTGTTGCTGCTTCTCTGCCA+AGG | 0.495579 | 7.1:-43371303 | None:intergenic |
| AGACGGTGATTCCATGATTA+CGG | 0.496172 | 7.1:-43368551 | None:intergenic |
| GTGTCCTTGCGAGGTGGAAG+CGG | 0.498314 | 7.1:-43368700 | None:intergenic |
| TTGTCTTGTGGTTGAACCAG+GGG | 0.501803 | 7.1:-43371207 | None:intergenic |
| GAAGAGGAATCAGAGTGATT+CGG | 0.505537 | 7.1:-43368634 | None:intergenic |
| GGGACCCATTCGTATCGTCC+TGG | 0.507892 | 7.1:-43371564 | None:intergenic |
| TACTCCAACAACTTATGAAG+TGG | 0.508794 | 7.1:+43371268 | MS.gene65084:CDS |
| GCGGCTACGGAGCTGGAGGA+AGG | 0.510998 | 7.1:-43368656 | None:intergenic |
| GAGGAACCTTACGGAGGCGG+CGG | 0.520521 | 7.1:-43368675 | None:intergenic |
| GAAGCGGCGGAGGAACCTTA+CGG | 0.521844 | 7.1:-43368684 | None:intergenic |
| TGTCCGGACACCAACGGCGG+TGG | 0.531487 | 7.1:-43368578 | None:intergenic |
| CGAAGCCTAGAATTTCCAAC+GGG | 0.536187 | 7.1:-43368727 | None:intergenic |
| CGCAAGGACACTGCTCCCGT+TGG | 0.536478 | 7.1:+43368712 | MS.gene65084:CDS |
| CCAAGTATCATTCATACCCC+TGG | 0.539760 | 7.1:+43371191 | MS.gene65084:CDS |
| GCGGAGATTTCTGGAGAGCA+AGG | 0.540908 | 7.1:-43368612 | None:intergenic |
| CGGAGATTTCTGGAGAGCAA+GGG | 0.542546 | 7.1:-43368611 | None:intergenic |
| TCCGCCGCTTCCACCTCGCA+AGG | 0.544264 | 7.1:+43368696 | MS.gene65084:CDS |
| CACACCTTGTAGTTTAATCA+GGG | 0.545905 | 7.1:+43371166 | MS.gene65084:CDS |
| TTTGTCTTGTGGTTGAACCA+GGG | 0.547862 | 7.1:-43371208 | None:intergenic |
| GATTACGGCGGCGACATCGC+CGG | 0.550115 | 7.1:-43368536 | None:intergenic |
| ACGGAGCTGGAGGAAGGAAG+AGG | 0.555343 | 7.1:-43368650 | None:intergenic |
| GGCACGTGTCCGGACACCAA+CGG | 0.561914 | 7.1:-43368584 | None:intergenic |
| GGACCCATTCGTATCGTCCT+GGG | 0.567033 | 7.1:-43371563 | None:intergenic |
| CATTCGTATCGTCCTGGGAG+AGG | 0.568346 | 7.1:-43371558 | None:intergenic |
| GGCGGCGGCTACGGAGCTGG+AGG | 0.568674 | 7.1:-43368660 | None:intergenic |
| TCTCCCAGGACGATACGAAT+GGG | 0.569573 | 7.1:+43371560 | MS.gene65084:CDS |
| AGTGGATGAATTCTTTGCCT+TGG | 0.571053 | 7.1:+43371286 | MS.gene65084:CDS |
| ATGGGTCCCTGTACTTCCCT+AGG | 0.571550 | 7.1:+43371578 | MS.gene65084:CDS |
| CTCTCCCAGGACGATACGAA+TGG | 0.575529 | 7.1:+43371559 | MS.gene65084:CDS |
| TCCTTGCGAGGTGGAAGCGG+CGG | 0.577776 | 7.1:-43368697 | None:intergenic |
| ACGGGAGCAGTGTCCTTGCG+AGG | 0.590790 | 7.1:-43368709 | None:intergenic |
| GTGAATGATGTACCTCTCCC+AGG | 0.597885 | 7.1:+43371546 | MS.gene65084:CDS |
| ATTCAATGGGTAAATACATG+AGG | 0.605964 | 7.1:+43368500 | None:intergenic |
| GCGGTTCGTCCTTTGTCTTG+TGG | 0.610884 | 7.1:-43371219 | None:intergenic |
| CCGTCTCACACCACCGCCGT+TGG | 0.622789 | 7.1:+43368568 | MS.gene65084:CDS |
| TACGGCGGCGACATCGCCGG+TGG | 0.623097 | 7.1:-43368533 | None:intergenic |
| ATGAGGAAATCCAAAACCAC+CGG | 0.623986 | 7.1:+43368517 | MS.gene65084:CDS |
| GCATGTGTTCTTGAATAGTG+CGG | 0.632168 | 7.1:-43371238 | None:intergenic |
| GGATCCCTGATTAAACTACA+AGG | 0.636161 | 7.1:-43371170 | None:intergenic |
| CCAACGGCGGTGGTGTGAGA+CGG | 0.637228 | 7.1:-43368568 | None:intergenic |
| ACGAAGCCTAGAATTTCCAA+CGG | 0.645481 | 7.1:-43368728 | None:intergenic |
| CTGGTTCAACCACAAGACAA+AGG | 0.647709 | 7.1:+43371210 | MS.gene65084:CDS |
| GAGGAATCAGAGTGATTCGG+CGG | 0.652108 | 7.1:-43368631 | None:intergenic |
| GGAGCAGTGTCCTTGCGAGG+TGG | 0.670925 | 7.1:-43368706 | None:intergenic |
| GCGGCGGAGGAACCTTACGG+AGG | 0.674543 | 7.1:-43368681 | None:intergenic |
| ACGTGTCCGGACACCAACGG+CGG | 0.703244 | 7.1:-43368581 | None:intergenic |
| GATGAGAATGAGAATCGCGA+TGG | 0.711593 | 7.1:+43368790 | MS.gene65084:CDS |
| GCTGGTCCTAGGGAAGTACA+GGG | 0.716168 | 7.1:-43371584 | None:intergenic |
| CGGTGATTCCATGATTACGG+CGG | 0.758790 | 7.1:-43368548 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAGTGAAAAAATAAAA+TGG | - | chr7.1:43370976-43370995 | None:intergenic | 10.0% |
| !! | AATTCTTAAAATTAAAACAT+GGG | - | chr7.1:43371377-43371396 | None:intergenic | 10.0% |
| !! | CAAAAAAATTACTATTAAAA+TGG | - | chr7.1:43371121-43371140 | None:intergenic | 10.0% |
| !!! | ATTAGAATTTTTCAAATAAT+AGG | + | chr7.1:43369207-43369226 | MS.gene65084:intron | 10.0% |
| !!! | TGTAAAAAATTGTTTTTTAA+TGG | - | chr7.1:43369258-43369277 | None:intergenic | 10.0% |
| !!! | TTAAAAAACAATTTTTTACA+TGG | + | chr7.1:43369258-43369277 | MS.gene65084:intron | 10.0% |
| !!! | TTAGAATTTTTCAAATAATA+GGG | + | chr7.1:43369208-43369227 | MS.gene65084:intron | 10.0% |
| !! | ATTCTTAAAATTAAAACATG+GGG | - | chr7.1:43371376-43371395 | None:intergenic | 15.0% |
| !! | GAATTCTTAAAATTAAAACA+TGG | - | chr7.1:43371378-43371397 | None:intergenic | 15.0% |
| !! | TAGGAAAAAATTAAAAGTAA+TGG | - | chr7.1:43371075-43371094 | None:intergenic | 15.0% |
| !!! | ATTTCTTTTTTTTTATTGTG+TGG | + | chr7.1:43369436-43369455 | MS.gene65084:intron | 15.0% |
| !!! | ATTTTTTAGAAATAACACAA+AGG | - | chr7.1:43368950-43368969 | None:intergenic | 15.0% |
| !!! | TTGCTTTTTATTTTTTGTTT+TGG | + | chr7.1:43371439-43371458 | MS.gene65084:intron | 15.0% |
| !!! | TTTTTTAGAAATAACACAAA+GGG | - | chr7.1:43368949-43368968 | None:intergenic | 15.0% |
| !! | AAAACATTAAACGAAAATCT+AGG | - | chr7.1:43369471-43369490 | None:intergenic | 20.0% |
| !! | AAACATTAAACGAAAATCTA+GGG | - | chr7.1:43369470-43369489 | None:intergenic | 20.0% |
| !! | ACAAAATGGAAAATAATTTC+TGG | + | chr7.1:43369846-43369865 | MS.gene65084:intron | 20.0% |
| !! | CAAAATGGAAAATAATTTCT+GGG | + | chr7.1:43369847-43369866 | MS.gene65084:intron | 20.0% |
| !! | TAGTAAAAATCATTTCATCT+TGG | - | chr7.1:43370681-43370700 | None:intergenic | 20.0% |
| !!! | ATGTTTCTATTTTTGTATGA+AGG | + | chr7.1:43369056-43369075 | MS.gene65084:intron | 20.0% |
| !!! | CTACTTTTAAAGTAGTTATT+GGG | + | chr7.1:43369899-43369918 | MS.gene65084:intron | 20.0% |
| !!! | GAAATTATTTTCCATTTTGT+TGG | - | chr7.1:43369846-43369865 | None:intergenic | 20.0% |
| !!! | GTATAATTACTCTTCAATTT+TGG | + | chr7.1:43368873-43368892 | MS.gene65084:intron | 20.0% |
| !!! | TACTTTTAAAGTAGTTATTG+GGG | + | chr7.1:43369900-43369919 | MS.gene65084:intron | 20.0% |
| !!! | TGGTTTTTAGAATTTTCATT+TGG | + | chr7.1:43369025-43369044 | MS.gene65084:intron | 20.0% |
| !!! | TTTTTAGAAATAACACAAAG+GGG | - | chr7.1:43368948-43368967 | None:intergenic | 20.0% |
| ! | AAAAAATACAAGGAAAGAGA+TGG | - | chr7.1:43370836-43370855 | None:intergenic | 25.0% |
| ! | AAAAAGCTGAAGAAGTAAAA+AGG | - | chr7.1:43369303-43369322 | None:intergenic | 25.0% |
| ! | AAACACATCAAACTGAAAAT+AGG | - | chr7.1:43370772-43370791 | None:intergenic | 25.0% |
| ! | AACATTAAACGAAAATCTAG+GGG | - | chr7.1:43369469-43369488 | None:intergenic | 25.0% |
| ! | AATATATGACTAATTGAGGA+AGG | - | chr7.1:43370265-43370284 | None:intergenic | 25.0% |
| ! | AATTTAATCCTCAAAACTGT+AGG | - | chr7.1:43371413-43371432 | None:intergenic | 25.0% |
| ! | ATACAAACAACATAACACAT+TGG | - | chr7.1:43371503-43371522 | None:intergenic | 25.0% |
| ! | ATTTAATCCTCAAAACTGTA+GGG | - | chr7.1:43371412-43371431 | None:intergenic | 25.0% |
| ! | CAAGCAACAAAAAAAATACA+AGG | - | chr7.1:43370846-43370865 | None:intergenic | 25.0% |
| ! | CAGAATCTTAAAATCCAAAA+GGG | - | chr7.1:43370306-43370325 | None:intergenic | 25.0% |
| ! | GGTTAATATATGACTAATTG+AGG | - | chr7.1:43370269-43370288 | None:intergenic | 25.0% |
| ! | TCAGAATCTTAAAATCCAAA+AGG | - | chr7.1:43370307-43370326 | None:intergenic | 25.0% |
| ! | TGATTACATAACCAACAAAA+TGG | + | chr7.1:43369832-43369851 | MS.gene65084:intron | 25.0% |
| !! | CATTATAGAGTCATATTTTG+AGG | + | chr7.1:43369975-43369994 | MS.gene65084:intron | 25.0% |
| !! | CCAATAACTACTTTAAAAGT+AGG | - | chr7.1:43369901-43369920 | None:intergenic | 25.0% |
| !! | GACAAATCATATTTTACGTT+AGG | - | chr7.1:43370508-43370527 | None:intergenic | 25.0% |
| !! | TTTAACTTTCATGTGATTGT+TGG | + | chr7.1:43369379-43369398 | MS.gene65084:intron | 25.0% |
| !!! | AATGCAAAGTTGCTTTTTTT+GGG | - | chr7.1:43370132-43370151 | None:intergenic | 25.0% |
| !!! | ACTTTTAAAGTAGTTATTGG+GGG | + | chr7.1:43369901-43369920 | MS.gene65084:intron | 25.0% |
| !!! | CCTACTTTTAAAGTAGTTAT+TGG | + | chr7.1:43369898-43369917 | MS.gene65084:intron | 25.0% |
| !!! | TTATGTTGTTTGTATTTTGC+AGG | + | chr7.1:43371508-43371527 | MS.gene65084:intron | 25.0% |
| !!! | TTTTTTACATGGACATACAA+AGG | + | chr7.1:43369269-43369288 | MS.gene65084:intron | 25.0% |
| AAAAGGGATTCTAATATCTC+AGG | - | chr7.1:43370290-43370309 | None:intergenic | 30.0% | |
| AACGAGTGGAAATTACAAAA+TGG | + | chr7.1:43370057-43370076 | MS.gene65084:intron | 30.0% | |
| ATCTCTCAAGAGTTAATCTA+AGG | - | chr7.1:43370333-43370352 | None:intergenic | 30.0% | |
| ATGTGTTTCAGATTTCTGTT+TGG | + | chr7.1:43370784-43370803 | MS.gene65084:intron | 30.0% | |
| CAAAAAAAGCAACTTTGCAT+TGG | + | chr7.1:43370131-43370150 | MS.gene65084:intron | 30.0% | |
| CACTCAAAAACTCTTCAAAT+TGG | - | chr7.1:43370941-43370960 | None:intergenic | 30.0% | |
| CTATTAAAATGGCTTAGCAA+AGG | - | chr7.1:43371110-43371129 | None:intergenic | 30.0% | |
| CTTCTTACATTAATGAGTTG+TGG | + | chr7.1:43369756-43369775 | MS.gene65084:intron | 30.0% | |
| GAAAAGTAACTGGCATTTAT+TGG | - | chr7.1:43370893-43370912 | None:intergenic | 30.0% | |
| GAAATTCATAGCAGAGAATA+GGG | + | chr7.1:43369084-43369103 | MS.gene65084:intron | 30.0% | |
| GAATGTTCGGATGAAAAATT+GGG | + | chr7.1:43368751-43368770 | MS.gene65084:CDS | 30.0% | |
| GCAAAGGAATCTAATAGAAT+AGG | - | chr7.1:43371094-43371113 | None:intergenic | 30.0% | |
| GTCATAGAAAATGCAAATGT+TGG | - | chr7.1:43371050-43371069 | None:intergenic | 30.0% | |
| TGAAATTCATAGCAGAGAAT+AGG | + | chr7.1:43369083-43369102 | MS.gene65084:intron | 30.0% | |
| TGAATGTTCGGATGAAAAAT+TGG | + | chr7.1:43368750-43368769 | MS.gene65084:CDS | 30.0% | |
| TTTAATCCTCAAAACTGTAG+GGG | - | chr7.1:43371411-43371430 | None:intergenic | 30.0% | |
| TTTGTCCAATCTTCATTAAC+CGG | + | chr7.1:43370522-43370541 | MS.gene65084:intron | 30.0% | |
| ! | ATTTTCCACTCGTCTTTTTA+AGG | + | chr7.1:43370029-43370048 | MS.gene65084:intron | 30.0% |
| ! | GTATAGTTCTGTTAGTACAA+AGG | + | chr7.1:43369522-43369541 | MS.gene65084:intron | 30.0% |
| ! | TGAGATATTAGAATCCCTTT+TGG | + | chr7.1:43370289-43370308 | MS.gene65084:intron | 30.0% |
| ! | TTTTCATGAGCGAATATTTC+TGG | + | chr7.1:43370575-43370594 | MS.gene65084:intron | 30.0% |
| ! | TTTTCCACTCGTCTTTTTAA+GGG | + | chr7.1:43370030-43370049 | MS.gene65084:intron | 30.0% |
| !! | GTTGCATATTAGTGTTGATT+TGG | + | chr7.1:43369005-43369024 | MS.gene65084:intron | 30.0% |
| !! | TTTTTAAGGGAAAAAACGAG+TGG | + | chr7.1:43370043-43370062 | MS.gene65084:intron | 30.0% |
| !!! | CAATGCAAAGTTGCTTTTTT+TGG | - | chr7.1:43370133-43370152 | None:intergenic | 30.0% |
| !!! | GTATTTTTTATCTGCTGCAT+TGG | + | chr7.1:43369641-43369660 | MS.gene65084:intron | 30.0% |
| AGGTGTGTCATATACATACA+TGG | + | chr7.1:43370744-43370763 | MS.gene65084:intron | 35.0% | |
| ATCCCAGATGAATAGTAAAC+AGG | - | chr7.1:43370386-43370405 | None:intergenic | 35.0% | |
| CACACCTTGTAGTTTAATCA+GGG | + | chr7.1:43371166-43371185 | MS.gene65084:CDS | 35.0% | |
| CATTCAAGCTGTCAGTAAAT+TGG | - | chr7.1:43370550-43370569 | None:intergenic | 35.0% | |
| GAAAATTTCGCAGAGATTGA+TGG | + | chr7.1:43368841-43368860 | MS.gene65084:CDS | 35.0% | |
| GCAGCAACAAGCATTATTTA+TGG | + | chr7.1:43371316-43371335 | MS.gene65084:CDS | 35.0% | |
| GGTGTGTCATATACATACAT+GGG | + | chr7.1:43370745-43370764 | MS.gene65084:intron | 35.0% | |
| GTGTGTCATATACATACATG+GGG | + | chr7.1:43370746-43370765 | MS.gene65084:intron | 35.0% | |
| TACTCCAACAACTTATGAAG+TGG | + | chr7.1:43371268-43371287 | MS.gene65084:CDS | 35.0% | |
| TCATCCACTTCATAAGTTGT+TGG | - | chr7.1:43371275-43371294 | None:intergenic | 35.0% | |
| TCCCAGATGAATAGTAAACA+GGG | - | chr7.1:43370385-43370404 | None:intergenic | 35.0% | |
| TGCAGTGAATGAGAAAGATA+TGG | + | chr7.1:43370810-43370829 | MS.gene65084:intron | 35.0% | |
| ! | TAACTTCTGTGACTTGTGAT+AGG | + | chr7.1:43369559-43369578 | MS.gene65084:intron | 35.0% |
| ! | TCCTACTCTAGAAAAGTAAC+TGG | - | chr7.1:43370903-43370922 | None:intergenic | 35.0% |
| ! | TTTTCCCTTAAAAAGACGAG+TGG | - | chr7.1:43370037-43370056 | None:intergenic | 35.0% |
| AACACGACACATGAGAGTTA+TGG | - | chr7.1:43370719-43370738 | None:intergenic | 40.0% | |
| ACGAAGCCTAGAATTTCCAA+CGG | - | chr7.1:43368731-43368750 | None:intergenic | 40.0% | |
| AGACGGTGATTCCATGATTA+CGG | - | chr7.1:43368554-43368573 | None:intergenic | 40.0% | |
| AGCTGTCAGTAAATTGGAAC+CGG | - | chr7.1:43370544-43370563 | None:intergenic | 40.0% | |
| AGGAAGGCAAATGCTAACTT+GGG | - | chr7.1:43370249-43370268 | None:intergenic | 40.0% | |
| AGTGGATGAATTCTTTGCCT+TGG | + | chr7.1:43371286-43371305 | MS.gene65084:CDS | 40.0% | |
| ATAGTAAACAGGGGCAATCA+AGG | - | chr7.1:43370375-43370394 | None:intergenic | 40.0% | |
| ATGAGGAAATCCAAAACCAC+CGG | + | chr7.1:43368517-43368536 | MS.gene65084:CDS | 40.0% | |
| CATTCACTTGTCGAGTAAGT+TGG | + | chr7.1:43370429-43370448 | MS.gene65084:intron | 40.0% | |
| CATTTCATCTTGGCTGCTTA+TGG | - | chr7.1:43370671-43370690 | None:intergenic | 40.0% | |
| CCCAGATGAATAGTAAACAG+GGG | - | chr7.1:43370384-43370403 | None:intergenic | 40.0% | |
| CCCCTGTTTACTATTCATCT+GGG | + | chr7.1:43370381-43370400 | MS.gene65084:intron | 40.0% | |
| CTCCTTAACATGTGACCTTA+GGG | - | chr7.1:43370109-43370128 | None:intergenic | 40.0% | |
| GAAGAGGAATCAGAGTGATT+CGG | - | chr7.1:43368637-43368656 | None:intergenic | 40.0% | |
| GCACACCTTGTAGTTTAATC+AGG | + | chr7.1:43371165-43371184 | MS.gene65084:CDS | 40.0% | |
| GCATGTGTTCTTGAATAGTG+CGG | - | chr7.1:43371241-43371260 | None:intergenic | 40.0% | |
| GGATCCCTGATTAAACTACA+AGG | - | chr7.1:43371173-43371192 | None:intergenic | 40.0% | |
| GGTACCACTGAATGAAAGAT+TGG | + | chr7.1:43370450-43370469 | MS.gene65084:intron | 40.0% | |
| GTGGTACCAATAATGCAGAA+GGG | + | chr7.1:43369775-43369794 | MS.gene65084:intron | 40.0% | |
| TCAACACCCTTCTGCATTAT+TGG | - | chr7.1:43369784-43369803 | None:intergenic | 40.0% | |
| TGAGCATGAGCGAATATTTC+TGG | + | chr7.1:43370605-43370624 | MS.gene65084:intron | 40.0% | |
| TGGAACCGGTTAATGAAGAT+TGG | - | chr7.1:43370530-43370549 | None:intergenic | 40.0% | |
| TGTGGTACCAATAATGCAGA+AGG | + | chr7.1:43369774-43369793 | MS.gene65084:intron | 40.0% | |
| TTCTAGGCTTCGTGAATGTT+CGG | + | chr7.1:43368738-43368757 | MS.gene65084:CDS | 40.0% | |
| TTTGTCTTGTGGTTGAACCA+GGG | - | chr7.1:43371211-43371230 | None:intergenic | 40.0% | |
| ! | CAGAGATTGATGGTAGAGAT+AGG | + | chr7.1:43368851-43368870 | MS.gene65084:CDS | 40.0% |
| ! | TTCGCTGTTGAAGGTTCTTT+TGG | + | chr7.1:43368817-43368836 | MS.gene65084:CDS | 40.0% |
| !! | ATTCATCTGGGATTTTCTGC+AGG | + | chr7.1:43370393-43370412 | MS.gene65084:intron | 40.0% |
| !! | TCATGTTAACTTGTGCCCTA+AGG | + | chr7.1:43370091-43370110 | MS.gene65084:intron | 40.0% |
| !!! | GCCAGTTACTTTTCTAGAGT+AGG | + | chr7.1:43370899-43370918 | MS.gene65084:intron | 40.0% |
| ACTGTGTGATAACTGCAGAC+AGG | - | chr7.1:43371000-43371019 | None:intergenic | 45.0% | |
| AGGGCACAAGTTAACATGAG+AGG | - | chr7.1:43370090-43370109 | None:intergenic | 45.0% | |
| ATCCTCAAAACTGTAGGGGT+TGG | - | chr7.1:43371407-43371426 | None:intergenic | 45.0% | |
| CCAAGTATCATTCATACCCC+TGG | + | chr7.1:43371191-43371210 | MS.gene65084:CDS | 45.0% | |
| CGAAGCCTAGAATTTCCAAC+GGG | - | chr7.1:43368730-43368749 | None:intergenic | 45.0% | |
| CTCATGTGTCGTGTTAGCAA+AGG | + | chr7.1:43370724-43370743 | MS.gene65084:intron | 45.0% | |
| CTGCAGTTATCACACAGTTC+TGG | + | chr7.1:43371002-43371021 | MS.gene65084:intron | 45.0% | |
| CTGGTTCAACCACAAGACAA+AGG | + | chr7.1:43371210-43371229 | MS.gene65084:CDS | 45.0% | |
| CTTTGTCTTGTGGTTGAACC+AGG | - | chr7.1:43371212-43371231 | None:intergenic | 45.0% | |
| GAGGAAGGCAAATGCTAACT+TGG | - | chr7.1:43370250-43370269 | None:intergenic | 45.0% | |
| GATGAGAATGAGAATCGCGA+TGG | + | chr7.1:43368790-43368809 | MS.gene65084:CDS | 45.0% | |
| GATGGTGATTTCGCTGTTGA+AGG | + | chr7.1:43368808-43368827 | MS.gene65084:CDS | 45.0% | |
| GCCCCTGTTTACTATTCATC+TGG | + | chr7.1:43370380-43370399 | MS.gene65084:intron | 45.0% | |
| GCGTCCAATCTTTCATTCAG+TGG | - | chr7.1:43370457-43370476 | None:intergenic | 45.0% | |
| GCTCCTTAACATGTGACCTT+AGG | - | chr7.1:43370110-43370129 | None:intergenic | 45.0% | |
| TCCTTAACATGTGCCCTTGA+GGG | + | chr7.1:43370223-43370242 | MS.gene65084:intron | 45.0% | |
| TGCCCTAAGGTCACATGTTA+AGG | + | chr7.1:43370104-43370123 | MS.gene65084:intron | 45.0% | |
| TTCCTTAACATGTGCCCTTG+AGG | + | chr7.1:43370222-43370241 | MS.gene65084:intron | 45.0% | |
| TTGTCTTGTGGTTGAACCAG+GGG | - | chr7.1:43371210-43371229 | None:intergenic | 45.0% | |
| ! | CCAGGGGTATGAATGATACT+TGG | - | chr7.1:43371194-43371213 | None:intergenic | 45.0% |
| !! | ATCTGGGATTTTCTGCAGGT+AGG | + | chr7.1:43370397-43370416 | MS.gene65084:intron | 45.0% |
| !! | TCTGGGATTTTCTGCAGGTA+GGG | + | chr7.1:43370398-43370417 | MS.gene65084:intron | 45.0% |
| !! | TGTGATTGTTGGTAGCACTG+AGG | + | chr7.1:43369500-43369519 | MS.gene65084:intron | 45.0% |
| !! | TTTCTGGAGAGCAAGGGTTT+TGG | - | chr7.1:43368608-43368627 | None:intergenic | 45.0% |
| AATGCTAACTTGGGCCCTCA+AGG | - | chr7.1:43370240-43370259 | None:intergenic | 50.0% | |
| ATGCTAACTTGGGCCCTCAA+GGG | - | chr7.1:43370239-43370258 | None:intergenic | 50.0% | |
| CACATGAGAGTTATGGCTGC+TGG | - | chr7.1:43370712-43370731 | None:intergenic | 50.0% | |
| CGGTGATTCCATGATTACGG+CGG | - | chr7.1:43368551-43368570 | None:intergenic | 50.0% | |
| CTGCTCCCGTTGGAAATTCT+AGG | + | chr7.1:43368722-43368741 | MS.gene65084:CDS | 50.0% | |
| GTGAATGATGTACCTCTCCC+AGG | + | chr7.1:43371546-43371565 | MS.gene65084:CDS | 50.0% | |
| TCTCCCAGGACGATACGAAT+GGG | + | chr7.1:43371560-43371579 | MS.gene65084:CDS | 50.0% | |
| ! | AGTGATTCGGCGGAGATTTC+TGG | - | chr7.1:43368624-43368643 | None:intergenic | 50.0% |
| ! | CGGAGATTTCTGGAGAGCAA+GGG | - | chr7.1:43368614-43368633 | None:intergenic | 50.0% |
| ! | GAGGAATCAGAGTGATTCGG+CGG | - | chr7.1:43368634-43368653 | None:intergenic | 50.0% |
| ! | GTCCAACCCCTACAGTTTTG+AGG | + | chr7.1:43371402-43371421 | MS.gene65084:intron | 50.0% |
| ! | TTGTTGCTGCTTCTCTGCCA+AGG | - | chr7.1:43371306-43371325 | None:intergenic | 50.0% |
| CATTCGTATCGTCCTGGGAG+AGG | - | chr7.1:43371561-43371580 | None:intergenic | 55.0% | |
| CTCTCCCAGGACGATACGAA+TGG | + | chr7.1:43371559-43371578 | MS.gene65084:CDS | 55.0% | |
| GAGACAAGCCCTGACTCAGT+GGG | - | chr7.1:43370871-43370890 | None:intergenic | 55.0% | |
| GCGGTTCGTCCTTTGTCTTG+TGG | - | chr7.1:43371222-43371241 | None:intergenic | 55.0% | |
| GGACCCATTCGTATCGTCCT+GGG | - | chr7.1:43371566-43371585 | None:intergenic | 55.0% | |
| TGCTTGAGCCCACTGAGTCA+GGG | + | chr7.1:43370860-43370879 | MS.gene65084:intron | 55.0% | |
| TTGCTTGAGCCCACTGAGTC+AGG | + | chr7.1:43370859-43370878 | MS.gene65084:intron | 55.0% | |
| ! | GCCCTCAAGGGCACATGTTA+AGG | - | chr7.1:43370227-43370246 | None:intergenic | 55.0% |
| ! | GCGGAGATTTCTGGAGAGCA+AGG | - | chr7.1:43368615-43368634 | None:intergenic | 55.0% |
| !! | CAAGGGTTTTGGCACGTGTC+CGG | - | chr7.1:43368597-43368616 | None:intergenic | 55.0% |
| ACGGAGCTGGAGGAAGGAAG+AGG | - | chr7.1:43368653-43368672 | None:intergenic | 60.0% | |
| CGATGTCGCCGCCGTAATCA+TGG | + | chr7.1:43368540-43368559 | MS.gene65084:CDS | 60.0% | |
| GAAGCGGCGGAGGAACCTTA+CGG | - | chr7.1:43368687-43368706 | None:intergenic | 60.0% | |
| GGAGACAAGCCCTGACTCAG+TGG | - | chr7.1:43370872-43370891 | None:intergenic | 60.0% | |
| GGGACCCATTCGTATCGTCC+TGG | - | chr7.1:43371567-43371586 | None:intergenic | 60.0% | |
| GTGTCCTTGCGAGGTGGAAG+CGG | - | chr7.1:43368703-43368722 | None:intergenic | 60.0% | |
| ACGGGAGCAGTGTCCTTGCG+AGG | - | chr7.1:43368712-43368731 | None:intergenic | 65.0% | |
| ACGTGTCCGGACACCAACGG+CGG | - | chr7.1:43368584-43368603 | None:intergenic | 65.0% | |
| CCAACGGCGGTGGTGTGAGA+CGG | - | chr7.1:43368571-43368590 | None:intergenic | 65.0% | |
| CGCAAGGACACTGCTCCCGT+TGG | + | chr7.1:43368712-43368731 | MS.gene65084:CDS | 65.0% | |
| GAGGAACCTTACGGAGGCGG+CGG | - | chr7.1:43368678-43368697 | None:intergenic | 65.0% | |
| GATTACGGCGGCGACATCGC+CGG | - | chr7.1:43368539-43368558 | None:intergenic | 65.0% | |
| GCGGAGGAACCTTACGGAGG+CGG | - | chr7.1:43368681-43368700 | None:intergenic | 65.0% | |
| GGAGCAGTGTCCTTGCGAGG+TGG | - | chr7.1:43368709-43368728 | None:intergenic | 65.0% | |
| GGCACGTGTCCGGACACCAA+CGG | - | chr7.1:43368587-43368606 | None:intergenic | 65.0% | |
| TCCTTGCGAGGTGGAAGCGG+CGG | - | chr7.1:43368700-43368719 | None:intergenic | 65.0% | |
| ! | ACACCACCGCCGTTGGTGTC+CGG | + | chr7.1:43368575-43368594 | MS.gene65084:CDS | 65.0% |
| ! | GGCGACATCGCCGGTGGTTT+TGG | - | chr7.1:43368530-43368549 | None:intergenic | 65.0% |
| CCGTCTCACACCACCGCCGT+TGG | + | chr7.1:43368568-43368587 | MS.gene65084:CDS | 70.0% | |
| CCTTACGGAGGCGGCGGCTA+CGG | - | chr7.1:43368672-43368691 | None:intergenic | 70.0% | |
| GCGGCGGAGGAACCTTACGG+AGG | - | chr7.1:43368684-43368703 | None:intergenic | 70.0% | |
| GCGGCTACGGAGCTGGAGGA+AGG | - | chr7.1:43368659-43368678 | None:intergenic | 70.0% | |
| TCCGCCGCTTCCACCTCGCA+AGG | + | chr7.1:43368696-43368715 | MS.gene65084:CDS | 70.0% | |
| TGTCCGGACACCAACGGCGG+TGG | - | chr7.1:43368581-43368600 | None:intergenic | 70.0% | |
| TTGCGAGGTGGAAGCGGCGG+AGG | - | chr7.1:43368697-43368716 | None:intergenic | 70.0% | |
| CCGTAGCCGCCGCCTCCGTA+AGG | + | chr7.1:43368669-43368688 | MS.gene65084:CDS | 75.0% | |
| TACGGCGGCGACATCGCCGG+TGG | - | chr7.1:43368536-43368555 | None:intergenic | 75.0% | |
| ! | GGAGGCGGCGGCTACGGAGC+TGG | - | chr7.1:43368666-43368685 | None:intergenic | 80.0% |
| ! | GGCGGCGGCTACGGAGCTGG+AGG | - | chr7.1:43368663-43368682 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 43368505 | 43371599 | 43368505 | ID=MS.gene65084 |
| chr7.1 | mRNA | 43368505 | 43371599 | 43368505 | ID=MS.gene65084.t1;Parent=MS.gene65084 |
| chr7.1 | exon | 43368505 | 43368872 | 43368505 | ID=MS.gene65084.t1.exon1;Parent=MS.gene65084.t1 |
| chr7.1 | CDS | 43368505 | 43368872 | 43368505 | ID=cds.MS.gene65084.t1;Parent=MS.gene65084.t1 |
| chr7.1 | exon | 43371151 | 43371342 | 43371151 | ID=MS.gene65084.t1.exon2;Parent=MS.gene65084.t1 |
| chr7.1 | CDS | 43371151 | 43371342 | 43371151 | ID=cds.MS.gene65084.t1;Parent=MS.gene65084.t1 |
| chr7.1 | exon | 43371530 | 43371599 | 43371530 | ID=MS.gene65084.t1.exon3;Parent=MS.gene65084.t1 |
| chr7.1 | CDS | 43371530 | 43371599 | 43371530 | ID=cds.MS.gene65084.t1;Parent=MS.gene65084.t1 |
| Gene Sequence |
| Protein sequence |
