Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66339.t1 | XP_003620882.1 | 89.3 | 513 | 54 | 1 | 1 | 513 | 1 | 512 | 9.00E-243 | 849.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66339.t1 | G7KJ82 | 89.3 | 513 | 54 | 1 | 1 | 513 | 1 | 512 | 6.5e-243 | 849.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049666 | MS.gene66339 | 0.823824 | 1.12E-53 | -1.69E-46 |
| MS.gene049824 | MS.gene66339 | 0.818545 | 1.85E-52 | -1.69E-46 |
| MS.gene049825 | MS.gene66339 | 0.828146 | 1.06E-54 | -1.69E-46 |
| MS.gene049873 | MS.gene66339 | 0.831914 | 1.27E-55 | -1.69E-46 |
| MS.gene050303 | MS.gene66339 | 0.828513 | 8.62E-55 | -1.69E-46 |
| MS.gene050355 | MS.gene66339 | 0.803715 | 3.05E-49 | -1.69E-46 |
| MS.gene051700 | MS.gene66339 | 0.803105 | 4.09E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene66339 | 0.815185 | 1.05E-51 | -1.69E-46 |
| MS.gene052584 | MS.gene66339 | 0.823035 | 1.72E-53 | -1.69E-46 |
| MS.gene052586 | MS.gene66339 | 0.809168 | 2.16E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene66339 | 0.837953 | 3.84E-57 | -1.69E-46 |
| MS.gene053294 | MS.gene66339 | 0.805206 | 1.49E-49 | -1.69E-46 |
| MS.gene05365 | MS.gene66339 | 0.815131 | 1.08E-51 | -1.69E-46 |
| MS.gene053995 | MS.gene66339 | 0.813443 | 2.55E-51 | -1.69E-46 |
| MS.gene055166 | MS.gene66339 | 0.83333 | 5.67E-56 | -1.69E-46 |
| MS.gene055778 | MS.gene66339 | 0.819441 | 1.16E-52 | -1.69E-46 |
| MS.gene055808 | MS.gene66339 | 0.860726 | 1.69E-63 | -1.69E-46 |
| MS.gene056091 | MS.gene66339 | 0.855514 | 5.99E-62 | -1.69E-46 |
| MS.gene056403 | MS.gene66339 | 0.837103 | 6.33E-57 | -1.69E-46 |
| MS.gene056605 | MS.gene66339 | 0.839903 | 1.20E-57 | -1.69E-46 |
| MS.gene05689 | MS.gene66339 | 0.854333 | 1.32E-61 | -1.69E-46 |
| MS.gene057314 | MS.gene66339 | 0.801329 | 9.48E-49 | -1.69E-46 |
| MS.gene058037 | MS.gene66339 | 0.807485 | 4.94E-50 | -1.69E-46 |
| MS.gene058908 | MS.gene66339 | 0.80901 | 2.34E-50 | -1.69E-46 |
| MS.gene05953 | MS.gene66339 | 0.811706 | 6.12E-51 | -1.69E-46 |
| MS.gene05954 | MS.gene66339 | 0.85519 | 7.45E-62 | -1.69E-46 |
| MS.gene059935 | MS.gene66339 | 0.855212 | 7.34E-62 | -1.69E-46 |
| MS.gene060429 | MS.gene66339 | 0.83864 | 2.55E-57 | -1.69E-46 |
| MS.gene060572 | MS.gene66339 | 0.809619 | 1.73E-50 | -1.69E-46 |
| MS.gene060586 | MS.gene66339 | 0.800648 | 1.31E-48 | -1.69E-46 |
| MS.gene060830 | MS.gene66339 | 0.831946 | 1.25E-55 | -1.69E-46 |
| MS.gene061040 | MS.gene66339 | -0.829551 | 4.83E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66339.t1 | MTR_6g091790 | 91.813 | 513 | 41 | 1 | 1 | 513 | 1 | 512 | 0.0 | 889 |
| MS.gene66339.t1 | MTR_6g091900 | 78.988 | 514 | 40 | 4 | 1 | 513 | 1 | 447 | 0.0 | 719 |
| MS.gene66339.t1 | MTR_6g091790 | 90.691 | 376 | 34 | 1 | 1 | 376 | 1 | 375 | 0.0 | 679 |
| MS.gene66339.t1 | MTR_6g092160 | 85.811 | 296 | 38 | 2 | 1 | 294 | 1 | 294 | 2.10e-167 | 475 |
| MS.gene66339.t1 | MTR_6g092160 | 91.304 | 276 | 22 | 1 | 1 | 274 | 1 | 276 | 5.53e-167 | 474 |
| MS.gene66339.t1 | MTR_6g092190 | 75.097 | 257 | 30 | 4 | 1 | 256 | 1 | 224 | 9.16e-123 | 361 |
| MS.gene66339.t1 | MTR_1g016740 | 33.495 | 412 | 241 | 9 | 14 | 404 | 14 | 413 | 4.91e-56 | 196 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66339.t1 | AT5G11780 | 27.593 | 482 | 297 | 14 | 18 | 478 | 21 | 471 | 2.02e-41 | 155 |
Find 86 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCATGGAAATCACAAATT+TGG | 0.169385 | 6.4:+63169122 | None:intergenic |
| TAAGCATCTGAATCTGAATT+TGG | 0.212727 | 6.4:-63171797 | None:intergenic |
| GTCTATTCTGCAATCAAATT+TGG | 0.229642 | 6.4:+63169303 | MS.gene66339:CDS |
| GGTTGCAGAAAATCTCTTAA+AGG | 0.230767 | 6.4:+63169324 | MS.gene66339:CDS |
| TGAATGATTTGGCTCGTCTT+TGG | 0.239540 | 6.4:+63169613 | MS.gene66339:CDS |
| AGAAAATTCAGGGGATTCTT+TGG | 0.242463 | 6.4:-63169214 | None:intergenic |
| AGAGTTTCATGTTGGTTATT+TGG | 0.245828 | 6.4:+63169728 | MS.gene66339:CDS |
| GAATGATTTGGCTCGTCTTT+GGG | 0.283844 | 6.4:+63169614 | MS.gene66339:CDS |
| GCTTGTTCAGCTTCTGTTAG+TGG | 0.286482 | 6.4:+63169399 | MS.gene66339:CDS |
| TTTGCCTCTGAACTCAATAT+TGG | 0.294110 | 6.4:+63170664 | MS.gene66339:CDS |
| TCTTTGGTTGATATGATTCT+TGG | 0.304559 | 6.4:+63169528 | MS.gene66339:CDS |
| ATCTGTTATCTTGCCGTCTA+AGG | 0.318619 | 6.4:-63171510 | None:intergenic |
| AATTATTTGTGAAGGTAAAT+TGG | 0.321645 | 6.4:-63171210 | None:intergenic |
| ACCTTCACAAATAATTAAAC+TGG | 0.339310 | 6.4:+63171217 | MS.gene66339:CDS |
| TATGATACATAGTGTGGTTA+AGG | 0.342249 | 6.4:+63169458 | MS.gene66339:CDS |
| ATCAAAAGATGGGTCAAGTT+TGG | 0.348170 | 6.4:-63169271 | None:intergenic |
| TGAGGATCCATTTGTCTTGC+CGG | 0.351271 | 6.4:-63171270 | None:intergenic |
| ATGTGGCTGTAGAGTATCTT+AGG | 0.354901 | 6.4:+63171038 | MS.gene66339:CDS |
| TCAATGGAATGAGAAAATTC+AGG | 0.355310 | 6.4:-63169225 | None:intergenic |
| TGAAGAGAAAGATTTGGATT+TGG | 0.356237 | 6.4:+63169581 | MS.gene66339:CDS |
| AATTTCTGAAGAGAAAGATT+TGG | 0.357567 | 6.4:+63169575 | MS.gene66339:CDS |
| AGGAACAGTTTGAATTGAAA+AGG | 0.358615 | 6.4:+63169478 | MS.gene66339:CDS |
| CGTCACTAATTAATTTGCTT+TGG | 0.362050 | 6.4:-63171592 | None:intergenic |
| AATGAAGGAAGTGAAATCTT+TGG | 0.369502 | 6.4:+63169512 | MS.gene66339:CDS |
| GGGATTGGAAAAGGGTGAAT+TGG | 0.370113 | 6.4:+63169806 | MS.gene66339:CDS |
| CAGCAGCAGATTGCTCCGTT+TGG | 0.374351 | 6.4:-63171484 | None:intergenic |
| TTTGTTTGATTCTGTACTAT+TGG | 0.387596 | 6.4:+63170943 | MS.gene66339:CDS |
| AGCAGCAGATTGCTCCGTTT+GGG | 0.388980 | 6.4:-63171483 | None:intergenic |
| CTTTGGTTGATATGATTCTT+GGG | 0.402702 | 6.4:+63169529 | MS.gene66339:CDS |
| GAAAATTCAGGGGATTCTTT+GGG | 0.405005 | 6.4:-63169213 | None:intergenic |
| GGAACAGTTTGAATTGAAAA+GGG | 0.418531 | 6.4:+63169479 | MS.gene66339:CDS |
| GAAAATGCCGGCAAGACAAA+TGG | 0.439409 | 6.4:+63171263 | MS.gene66339:CDS |
| GATGTTTGTGGTTGGATTTG+TGG | 0.446199 | 6.4:+63169702 | MS.gene66339:CDS |
| TTTCATGTTGGTTATTTGGC+TGG | 0.449161 | 6.4:+63169732 | MS.gene66339:CDS |
| AATGAAAGTCGAAAACGAAA+AGG | 0.455565 | 6.4:+63171653 | MS.gene66339:CDS |
| TGAGTAGTGATGTTTGTGGT+TGG | 0.458478 | 6.4:+63169694 | MS.gene66339:CDS |
| CAGTTCATGTAATGCATCAA+TGG | 0.462532 | 6.4:-63169241 | None:intergenic |
| CACATGTGTAACAATCAATC+TGG | 0.468222 | 6.4:-63171020 | None:intergenic |
| AGCCAACACTCCAACTCTTA+AGG | 0.469350 | 6.4:-63169836 | None:intergenic |
| TTTGGCTGGTGCTGTTATGA+TGG | 0.474617 | 6.4:+63169746 | MS.gene66339:CDS |
| TGGAAATGTGCCTTAAGAGT+TGG | 0.477292 | 6.4:+63169826 | MS.gene66339:CDS |
| AAGGGAGAAGAAAGTAATGA+AGG | 0.479840 | 6.4:+63169497 | MS.gene66339:CDS |
| TACAATCAGAGGTTCTTATG+AGG | 0.479898 | 6.4:+63170624 | MS.gene66339:intron |
| TAGAGTTGTCTCTTATAGTA+AGG | 0.480176 | 6.4:+63171175 | MS.gene66339:CDS |
| TTTGATATGGGATTGGAAAA+GGG | 0.490467 | 6.4:+63169798 | MS.gene66339:CDS |
| ACCAGTTTAATTATTTGTGA+AGG | 0.491766 | 6.4:-63171218 | None:intergenic |
| CGACGATGATGATGCAAATG+AGG | 0.494007 | 6.4:+63169647 | MS.gene66339:CDS |
| CGTTGACAATGTTGGAGAAG+AGG | 0.496608 | 6.4:+63171547 | MS.gene66339:CDS |
| AGGGAAAAGCAGTAGAAAGA+AGG | 0.497735 | 6.4:+63171673 | MS.gene66339:CDS |
| AGAGGAAAATGCAGGTGAGG+AGG | 0.498375 | 6.4:+63171565 | MS.gene66339:CDS |
| TTGCTGCGCCTTGAGAATCT+AGG | 0.499487 | 6.4:+63171401 | MS.gene66339:CDS |
| ACCCACATCACATCAAAAGA+TGG | 0.500998 | 6.4:-63169282 | None:intergenic |
| GTTTGATTCTGTACTATTGG+TGG | 0.502223 | 6.4:+63170946 | MS.gene66339:CDS |
| TACTTACTTATAAGTGCTCT+CGG | 0.508541 | 6.4:-63171293 | None:intergenic |
| CAATGGAATGAGAAAATTCA+GGG | 0.509336 | 6.4:-63169224 | None:intergenic |
| ACAAATTTGGTTCCTCATGT+TGG | 0.514732 | 6.4:+63169135 | MS.gene66339:CDS |
| GCAGAAGTCCCACCTTTGAC+AGG | 0.519097 | 6.4:-63171734 | None:intergenic |
| AGAAGAGGAAAATGCAGGTG+AGG | 0.522684 | 6.4:+63171562 | MS.gene66339:CDS |
| ATGTCTTGACATTTCCCAAA+CGG | 0.524378 | 6.4:+63171469 | MS.gene66339:CDS |
| CAAACGGAGCAATCTGCTGC+TGG | 0.529824 | 6.4:+63171485 | MS.gene66339:CDS |
| TGTGGTAAAGAGTTTCATGT+TGG | 0.533079 | 6.4:+63169720 | MS.gene66339:CDS |
| AAATCTGTTCCTGTCAAAGG+TGG | 0.540352 | 6.4:+63171725 | MS.gene66339:CDS |
| ATGAAAGTCGAAAACGAAAA+GGG | 0.541860 | 6.4:+63171654 | MS.gene66339:CDS |
| AAGTGATGAGAGTGAAGTGC+AGG | 0.542405 | 6.4:+63171772 | MS.gene66339:CDS |
| CTTGTGAGTAGTGATGTTTG+TGG | 0.550968 | 6.4:+63169690 | MS.gene66339:CDS |
| AAACTGGTTTCAAACCAGAA+TGG | 0.551672 | 6.4:+63171233 | MS.gene66339:CDS |
| TCTGCTGCTGGTACCTTAGA+CGG | 0.556952 | 6.4:+63171497 | MS.gene66339:CDS |
| GACGATGATGATGCAAATGA+GGG | 0.566547 | 6.4:+63169648 | MS.gene66339:CDS |
| TTCTGATAGAATTTCTTGCA+TGG | 0.570840 | 6.4:-63169187 | None:intergenic |
| AATGGTATCGAGGAAAATGC+CGG | 0.571295 | 6.4:+63171251 | MS.gene66339:CDS |
| CAATCAATCTGGTCAAGGCA+AGG | 0.586505 | 6.4:-63171009 | None:intergenic |
| CTCTAATTCCTAGATTCTCA+AGG | 0.593672 | 6.4:-63171409 | None:intergenic |
| CCCACATCACATCAAAAGAT+GGG | 0.595174 | 6.4:-63169281 | None:intergenic |
| AGACGAGCCAAATCATTCAA+AGG | 0.598943 | 6.4:-63169609 | None:intergenic |
| TGCCTTAAGAGTTGGAGTGT+TGG | 0.602128 | 6.4:+63169834 | MS.gene66339:CDS |
| AATCTGTTCCTGTCAAAGGT+GGG | 0.605050 | 6.4:+63171726 | MS.gene66339:CDS |
| GTTGGAGAAGAGGAAAATGC+AGG | 0.606008 | 6.4:+63171557 | MS.gene66339:CDS |
| TGTAACAATCAATCTGGTCA+AGG | 0.610915 | 6.4:-63171014 | None:intergenic |
| CTAACCAATATTGAGTTCAG+AGG | 0.626021 | 6.4:-63170668 | None:intergenic |
| CAAACATCACTACTCACAAG+AGG | 0.634413 | 6.4:-63169687 | None:intergenic |
| GACGGCAAGATAACAGATGA+CGG | 0.637583 | 6.4:+63171515 | MS.gene66339:CDS |
| TTCAAACCAGAATGGTATCG+AGG | 0.654461 | 6.4:+63171241 | MS.gene66339:CDS |
| CAGATTGATTGTTACACATG+TGG | 0.676868 | 6.4:+63171021 | MS.gene66339:CDS |
| ACTTATAAGTGCTCTCGGTG+AGG | 0.679393 | 6.4:-63171288 | None:intergenic |
| AATGGAATGAGAAAATTCAG+GGG | 0.687354 | 6.4:-63169223 | None:intergenic |
| ACGATGATGATGCAAATGAG+GGG | 0.709607 | 6.4:+63169649 | MS.gene66339:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATAAGTATGTTTAATT+TGG | - | chr6.4:63170537-63170556 | None:intergenic | 10.0% |
| !! | ACATTATCTCAAATTATTAT+CGG | - | chr6.4:63170294-63170313 | None:intergenic | 15.0% |
| !! | ATCAATATCCATAAAAATAA+TGG | - | chr6.4:63170779-63170798 | None:intergenic | 15.0% |
| !!! | ATTTTCTCAAAGTAAATTAT+CGG | - | chr6.4:63169996-63170015 | None:intergenic | 15.0% |
| !!! | TTTTTTTAAAAGCTATACTT+TGG | - | chr6.4:63170463-63170482 | None:intergenic | 15.0% |
| !! | AATTATTTGTGAAGGTAAAT+TGG | - | chr6.4:63171213-63171232 | None:intergenic | 20.0% |
| !! | ATGAAGAATTAGTTATTGTA+TGG | + | chr6.4:63171062-63171081 | MS.gene66339:intron | 20.0% |
| !! | GTTGAATGTAACTATATATT+TGG | + | chr6.4:63170022-63170041 | MS.gene66339:intron | 20.0% |
| !! | TTGATTATCACTTATACTAT+TGG | + | chr6.4:63170794-63170813 | MS.gene66339:intron | 20.0% |
| !! | TTTAAGCTAAAATATGTAGT+AGG | - | chr6.4:63170227-63170246 | None:intergenic | 20.0% |
| !! | TTTCATAATTCTTTCTAGAT+TGG | + | chr6.4:63171378-63171397 | MS.gene66339:intron | 20.0% |
| !!! | ATTGTGTTTGTTTTTTGATA+TGG | + | chr6.4:63169785-63169804 | MS.gene66339:CDS | 20.0% |
| !!! | TTGTGTTTGTTTTTTGATAT+GGG | + | chr6.4:63169786-63169805 | MS.gene66339:CDS | 20.0% |
| ! | ACCAGTTTAATTATTTGTGA+AGG | - | chr6.4:63171221-63171240 | None:intergenic | 25.0% |
| ! | ACCTTCACAAATAATTAAAC+TGG | + | chr6.4:63171217-63171236 | MS.gene66339:CDS | 25.0% |
| ! | ATCCATAAAAATAATGGTGT+TGG | - | chr6.4:63170773-63170792 | None:intergenic | 25.0% |
| ! | CAGATATGCAATAAATAACA+AGG | - | chr6.4:63170702-63170721 | None:intergenic | 25.0% |
| ! | CCATTAAAGCTGTTTATATT+TGG | + | chr6.4:63170874-63170893 | MS.gene66339:intron | 25.0% |
| ! | CTATGTATCATAAAAACAAC+AGG | - | chr6.4:63169450-63169469 | None:intergenic | 25.0% |
| ! | TGAAGCATAATTTCTGTTAA+TGG | + | chr6.4:63171127-63171146 | MS.gene66339:intron | 25.0% |
| ! | TTTGTTTGATTCTGTACTAT+TGG | + | chr6.4:63170943-63170962 | MS.gene66339:CDS | 25.0% |
| !! | AATTTCTGAAGAGAAAGATT+TGG | + | chr6.4:63169575-63169594 | MS.gene66339:CDS | 25.0% |
| !! | ACATAGCTTAAGTTTTTATC+TGG | + | chr6.4:63170364-63170383 | MS.gene66339:intron | 25.0% |
| !! | CATAGCTTAAAACTTTTATG+TGG | + | chr6.4:63170123-63170142 | MS.gene66339:intron | 25.0% |
| !! | CCAAATATAAACAGCTTTAA+TGG | - | chr6.4:63170877-63170896 | None:intergenic | 25.0% |
| !! | TAAAACTTTTATGTGGTTGA+TGG | + | chr6.4:63170130-63170149 | MS.gene66339:intron | 25.0% |
| !! | TTAAGTTTTTATCTGGATGA+GGG | + | chr6.4:63170371-63170390 | MS.gene66339:intron | 25.0% |
| !! | TTAATTTGGTCTGTTTGAAT+TGG | - | chr6.4:63170523-63170542 | None:intergenic | 25.0% |
| !! | TTTTGTTCTTCTAATATCTG+TGG | + | chr6.4:63171318-63171337 | MS.gene66339:intron | 25.0% |
| !!! | TGTTTTTATGATACATAGTG+TGG | + | chr6.4:63169452-63169471 | MS.gene66339:CDS | 25.0% |
| !!! | TTTCAGAATGTGTACTTTTT+GGG | + | chr6.4:63169870-63169889 | MS.gene66339:CDS | 25.0% |
| !!! | TTTGTTTTTTGATATGGGAT+TGG | + | chr6.4:63169791-63169810 | MS.gene66339:CDS | 25.0% |
| AAAAAAATCAAGATGACTCG+CGG | + | chr6.4:63170477-63170496 | MS.gene66339:intron | 30.0% | |
| AATATCTGTGGTTTCAGAAA+TGG | + | chr6.4:63171330-63171349 | MS.gene66339:intron | 30.0% | |
| AATGAAAGTCGAAAACGAAA+AGG | + | chr6.4:63171653-63171672 | MS.gene66339:CDS | 30.0% | |
| AATGAAGGAAGTGAAATCTT+TGG | + | chr6.4:63169512-63169531 | MS.gene66339:CDS | 30.0% | |
| AATGGAATGAGAAAATTCAG+GGG | - | chr6.4:63169226-63169245 | None:intergenic | 30.0% | |
| AGGAACAGTTTGAATTGAAA+AGG | + | chr6.4:63169478-63169497 | MS.gene66339:CDS | 30.0% | |
| ATGAAAGTCGAAAACGAAAA+GGG | + | chr6.4:63171654-63171673 | MS.gene66339:CDS | 30.0% | |
| CAACATTGTCAACGTAAAAA+AGG | - | chr6.4:63171541-63171560 | None:intergenic | 30.0% | |
| CAATGGAATGAGAAAATTCA+GGG | - | chr6.4:63169227-63169246 | None:intergenic | 30.0% | |
| GGAACAGTTTGAATTGAAAA+GGG | + | chr6.4:63169479-63169498 | MS.gene66339:CDS | 30.0% | |
| GTCTATTCTGCAATCAAATT+TGG | + | chr6.4:63169303-63169322 | MS.gene66339:CDS | 30.0% | |
| TAAGCATCTGAATCTGAATT+TGG | - | chr6.4:63171800-63171819 | None:intergenic | 30.0% | |
| TACTTACTTATAAGTGCTCT+CGG | - | chr6.4:63171296-63171315 | None:intergenic | 30.0% | |
| TAGAGTTGTCTCTTATAGTA+AGG | + | chr6.4:63171175-63171194 | MS.gene66339:CDS | 30.0% | |
| TATGATACATAGTGTGGTTA+AGG | + | chr6.4:63169458-63169477 | MS.gene66339:CDS | 30.0% | |
| TCAATGGAATGAGAAAATTC+AGG | - | chr6.4:63169228-63169247 | None:intergenic | 30.0% | |
| TCTGTTAATGGTTTGATGTA+GGG | + | chr6.4:63171139-63171158 | MS.gene66339:intron | 30.0% | |
| TGAAGAGAAAGATTTGGATT+TGG | + | chr6.4:63169581-63169600 | MS.gene66339:CDS | 30.0% | |
| TGTCAGTATCAATGTTTCAT+AGG | - | chr6.4:63169965-63169984 | None:intergenic | 30.0% | |
| TTCTGATAGAATTTCTTGCA+TGG | - | chr6.4:63169190-63169209 | None:intergenic | 30.0% | |
| TTCTGTTAATGGTTTGATGT+AGG | + | chr6.4:63171138-63171157 | MS.gene66339:intron | 30.0% | |
| TTTGATATGGGATTGGAAAA+GGG | + | chr6.4:63169798-63169817 | MS.gene66339:CDS | 30.0% | |
| ! | AAACACCACAGTGATTTTAA+CGG | - | chr6.4:63170431-63170450 | None:intergenic | 30.0% |
| ! | AGAGTTTCATGTTGGTTATT+TGG | + | chr6.4:63169728-63169747 | MS.gene66339:CDS | 30.0% |
| ! | CTTAAGTTTTTATCTGGATG+AGG | + | chr6.4:63170370-63170389 | MS.gene66339:intron | 30.0% |
| ! | CTTTCAGAATGTGTACTTTT+TGG | + | chr6.4:63169869-63169888 | MS.gene66339:CDS | 30.0% |
| ! | CTTTGGTTGATATGATTCTT+GGG | + | chr6.4:63169529-63169548 | MS.gene66339:CDS | 30.0% |
| ! | TACATTCAATGTGAAGTGTT+CGG | + | chr6.4:63170095-63170114 | MS.gene66339:intron | 30.0% |
| ! | TCTTTGGTTGATATGATTCT+TGG | + | chr6.4:63169528-63169547 | MS.gene66339:CDS | 30.0% |
| ! | TTTACCTTTTGTACAATCAG+AGG | + | chr6.4:63170613-63170632 | MS.gene66339:intron | 30.0% |
| ! | TTTTGATATGGGATTGGAAA+AGG | + | chr6.4:63169797-63169816 | MS.gene66339:CDS | 30.0% |
| !! | CGTCACTAATTAATTTGCTT+TGG | - | chr6.4:63171595-63171614 | None:intergenic | 30.0% |
| !!! | CTTTTTTACGTTGACAATGT+TGG | + | chr6.4:63171539-63171558 | MS.gene66339:CDS | 30.0% |
| !!! | GGTGAGGTTTATTTTGTTTT+TGG | + | chr6.4:63169891-63169910 | MS.gene66339:intron | 30.0% |
| !!! | GTCCAACACCATTATTTTTA+TGG | + | chr6.4:63170768-63170787 | MS.gene66339:intron | 30.0% |
| AAATGGTACCCAATGAAGTA+CGG | + | chr6.4:63171347-63171366 | MS.gene66339:intron | 35.0% | |
| AAGGGAGAAGAAAGTAATGA+AGG | + | chr6.4:63169497-63169516 | MS.gene66339:CDS | 35.0% | |
| ACTTCACATTGAATGTACCT+CGG | - | chr6.4:63170092-63170111 | None:intergenic | 35.0% | |
| AGAAAATTCAGGGGATTCTT+TGG | - | chr6.4:63169217-63169236 | None:intergenic | 35.0% | |
| AGAACCTCTGATTGTACAAA+AGG | - | chr6.4:63170620-63170639 | None:intergenic | 35.0% | |
| ATATGTTAGCCGTACTTCAT+TGG | - | chr6.4:63171359-63171378 | None:intergenic | 35.0% | |
| ATCAAAAGATGGGTCAAGTT+TGG | - | chr6.4:63169274-63169293 | None:intergenic | 35.0% | |
| ATGTCTTGACATTTCCCAAA+CGG | + | chr6.4:63171469-63171488 | MS.gene66339:CDS | 35.0% | |
| ATTTGGTCTGTTTGAATTGG+CGG | - | chr6.4:63170520-63170539 | None:intergenic | 35.0% | |
| CAAAAATCTGTTCCTGTCAA+AGG | + | chr6.4:63171722-63171741 | MS.gene66339:CDS | 35.0% | |
| CACATGTGTAACAATCAATC+TGG | - | chr6.4:63171023-63171042 | None:intergenic | 35.0% | |
| CAGATTGATTGTTACACATG+TGG | + | chr6.4:63171021-63171040 | MS.gene66339:CDS | 35.0% | |
| CAGTTCATGTAATGCATCAA+TGG | - | chr6.4:63169244-63169263 | None:intergenic | 35.0% | |
| CGCTGAAAAAGATCATTGAA+TGG | - | chr6.4:63170163-63170182 | None:intergenic | 35.0% | |
| CTAACCAATATTGAGTTCAG+AGG | - | chr6.4:63170671-63170690 | None:intergenic | 35.0% | |
| CTCTAATTCCTAGATTCTCA+AGG | - | chr6.4:63171412-63171431 | None:intergenic | 35.0% | |
| GAAAATTCAGGGGATTCTTT+GGG | - | chr6.4:63169216-63169235 | None:intergenic | 35.0% | |
| GGAGTTAATACATGTAGTGT+AGG | - | chr6.4:63170273-63170292 | None:intergenic | 35.0% | |
| GGTTGCAGAAAATCTCTTAA+AGG | + | chr6.4:63169324-63169343 | MS.gene66339:CDS | 35.0% | |
| GTTAAAATCACTGTGGTGTT+TGG | + | chr6.4:63170430-63170449 | MS.gene66339:intron | 35.0% | |
| GTTTGATTCTGTACTATTGG+TGG | + | chr6.4:63170946-63170965 | MS.gene66339:CDS | 35.0% | |
| TACAATCAGAGGTTCTTATG+AGG | + | chr6.4:63170624-63170643 | MS.gene66339:intron | 35.0% | |
| TATGTTAGCCGTACTTCATT+GGG | - | chr6.4:63171358-63171377 | None:intergenic | 35.0% | |
| TCAGTGTATGTTTGGATTGA+CGG | + | chr6.4:63170400-63170419 | MS.gene66339:intron | 35.0% | |
| TGTAACAATCAATCTGGTCA+AGG | - | chr6.4:63171017-63171036 | None:intergenic | 35.0% | |
| TGTGGTAAAGAGTTTCATGT+TGG | + | chr6.4:63169720-63169739 | MS.gene66339:CDS | 35.0% | |
| TTTGCCTCTGAACTCAATAT+TGG | + | chr6.4:63170664-63170683 | MS.gene66339:CDS | 35.0% | |
| ! | AAACTGGTTTCAAACCAGAA+TGG | + | chr6.4:63171233-63171252 | MS.gene66339:CDS | 35.0% |
| ! | ACAAATTTGGTTCCTCATGT+TGG | + | chr6.4:63169135-63169154 | MS.gene66339:CDS | 35.0% |
| ! | GGTTTTGCCTTTGAATGATT+TGG | + | chr6.4:63169602-63169621 | MS.gene66339:CDS | 35.0% |
| ! | GTGCTGTTCTTTGTTTAATG+TGG | + | chr6.4:63170589-63170608 | MS.gene66339:intron | 35.0% |
| ! | TTTCATGTTGGTTATTTGGC+TGG | + | chr6.4:63169732-63169751 | MS.gene66339:CDS | 35.0% |
| !!! | TTCAATGATCTTTTTCAGCG+AGG | + | chr6.4:63170163-63170182 | MS.gene66339:intron | 35.0% |
| AAATCTGTTCCTGTCAAAGG+TGG | + | chr6.4:63171725-63171744 | MS.gene66339:CDS | 40.0% | |
| AATCTGTTCCTGTCAAAGGT+GGG | + | chr6.4:63171726-63171745 | MS.gene66339:CDS | 40.0% | |
| ACCCACATCACATCAAAAGA+TGG | - | chr6.4:63169285-63169304 | None:intergenic | 40.0% | |
| AGACGAGCCAAATCATTCAA+AGG | - | chr6.4:63169612-63169631 | None:intergenic | 40.0% | |
| AGGGAAAAGCAGTAGAAAGA+AGG | + | chr6.4:63171673-63171692 | MS.gene66339:CDS | 40.0% | |
| ATCTGTTATCTTGCCGTCTA+AGG | - | chr6.4:63171513-63171532 | None:intergenic | 40.0% | |
| CAAACATCACTACTCACAAG+AGG | - | chr6.4:63169690-63169709 | None:intergenic | 40.0% | |
| CCCACATCACATCAAAAGAT+GGG | - | chr6.4:63169284-63169303 | None:intergenic | 40.0% | |
| CTTGTGAGTAGTGATGTTTG+TGG | + | chr6.4:63169690-63169709 | MS.gene66339:CDS | 40.0% | |
| GATGTTTGTGGTTGGATTTG+TGG | + | chr6.4:63169702-63169721 | MS.gene66339:CDS | 40.0% | |
| GGATGAGTTCAGTGTATGTT+TGG | + | chr6.4:63170392-63170411 | MS.gene66339:intron | 40.0% | |
| GTTTGAATTGGCGGTGAAAT+TGG | - | chr6.4:63170511-63170530 | None:intergenic | 40.0% | |
| TGAGTAGTGATGTTTGTGGT+TGG | + | chr6.4:63169694-63169713 | MS.gene66339:CDS | 40.0% | |
| TGAGTCCGTTAAAATCACTG+TGG | + | chr6.4:63170423-63170442 | MS.gene66339:intron | 40.0% | |
| TGGAAATGTGCCTTAAGAGT+TGG | + | chr6.4:63169826-63169845 | MS.gene66339:CDS | 40.0% | |
| TTCAAACCAGAATGGTATCG+AGG | + | chr6.4:63171241-63171260 | MS.gene66339:CDS | 40.0% | |
| ! | AATGGTATCGAGGAAAATGC+CGG | + | chr6.4:63171251-63171270 | MS.gene66339:CDS | 40.0% |
| ! | ACCCATCTTTTGATGTGATG+TGG | + | chr6.4:63169280-63169299 | MS.gene66339:CDS | 40.0% |
| ! | ACGATGATGATGCAAATGAG+GGG | + | chr6.4:63169649-63169668 | MS.gene66339:CDS | 40.0% |
| ! | ATGTGGCTGTAGAGTATCTT+AGG | + | chr6.4:63171038-63171057 | MS.gene66339:CDS | 40.0% |
| ! | CATTTTCCTCGATACCATTC+TGG | - | chr6.4:63171250-63171269 | None:intergenic | 40.0% |
| ! | CCCATCTTTTGATGTGATGT+GGG | + | chr6.4:63169281-63169300 | MS.gene66339:CDS | 40.0% |
| ! | GAATGATTTGGCTCGTCTTT+GGG | + | chr6.4:63169614-63169633 | MS.gene66339:CDS | 40.0% |
| ! | GACGATGATGATGCAAATGA+GGG | + | chr6.4:63169648-63169667 | MS.gene66339:CDS | 40.0% |
| ! | GGCAAGGCTTTTTATGTACT+TGG | - | chr6.4:63170996-63171015 | None:intergenic | 40.0% |
| ! | GTGTAGTTTTCACCAACATG+AGG | - | chr6.4:63169150-63169169 | None:intergenic | 40.0% |
| ! | TGAATGATTTGGCTCGTCTT+TGG | + | chr6.4:63169613-63169632 | MS.gene66339:CDS | 40.0% |
| !! | CATGGTGTTTTTCAGCTTCA+GGG | - | chr6.4:63169172-63169191 | None:intergenic | 40.0% |
| !!! | GAATGTGTACTTTTTGGGTG+AGG | + | chr6.4:63169875-63169894 | MS.gene66339:intron | 40.0% |
| AAGTGATGAGAGTGAAGTGC+AGG | + | chr6.4:63171772-63171791 | MS.gene66339:CDS | 45.0% | |
| ACTTATAAGTGCTCTCGGTG+AGG | - | chr6.4:63171291-63171310 | None:intergenic | 45.0% | |
| AGAAGAGGAAAATGCAGGTG+AGG | + | chr6.4:63171562-63171581 | MS.gene66339:CDS | 45.0% | |
| AGCCAACACTCCAACTCTTA+AGG | - | chr6.4:63169839-63169858 | None:intergenic | 45.0% | |
| CAATCAATCTGGTCAAGGCA+AGG | - | chr6.4:63171012-63171031 | None:intergenic | 45.0% | |
| CGTTGACAATGTTGGAGAAG+AGG | + | chr6.4:63171547-63171566 | MS.gene66339:CDS | 45.0% | |
| GAAAATGCCGGCAAGACAAA+TGG | + | chr6.4:63171263-63171282 | MS.gene66339:CDS | 45.0% | |
| GACGGCAAGATAACAGATGA+CGG | + | chr6.4:63171515-63171534 | MS.gene66339:CDS | 45.0% | |
| GCTTGTTCAGCTTCTGTTAG+TGG | + | chr6.4:63169399-63169418 | MS.gene66339:CDS | 45.0% | |
| GGGATTGGAAAAGGGTGAAT+TGG | + | chr6.4:63169806-63169825 | MS.gene66339:CDS | 45.0% | |
| GTTGGAGAAGAGGAAAATGC+AGG | + | chr6.4:63171557-63171576 | MS.gene66339:CDS | 45.0% | |
| TGAGGATCCATTTGTCTTGC+CGG | - | chr6.4:63171273-63171292 | None:intergenic | 45.0% | |
| TGCCTTAAGAGTTGGAGTGT+TGG | + | chr6.4:63169834-63169853 | MS.gene66339:CDS | 45.0% | |
| TGTACGTCATCGACACACAT+CGG | + | chr6.4:63170062-63170081 | MS.gene66339:intron | 45.0% | |
| ! | CGACGATGATGATGCAAATG+AGG | + | chr6.4:63169647-63169666 | MS.gene66339:CDS | 45.0% |
| ! | CTTCACACTAAAGGCATGTC+CGG | - | chr6.4:63170334-63170353 | None:intergenic | 45.0% |
| ! | GTGTCGACACTTCACACTAA+AGG | - | chr6.4:63170343-63170362 | None:intergenic | 45.0% |
| !! | GCATGGTGTTTTTCAGCTTC+AGG | - | chr6.4:63169173-63169192 | None:intergenic | 45.0% |
| !! | TTTGGCTGGTGCTGTTATGA+TGG | + | chr6.4:63169746-63169765 | MS.gene66339:CDS | 45.0% |
| !!! | TTATTATTATTTTTTTGTTT+TGG | + | chr6.4:63170191-63170210 | MS.gene66339:intron | 5.0% |
| AGAGGAAAATGCAGGTGAGG+AGG | + | chr6.4:63171565-63171584 | MS.gene66339:CDS | 50.0% | |
| AGCAGCAGATTGCTCCGTTT+GGG | - | chr6.4:63171486-63171505 | None:intergenic | 50.0% | |
| ATTTGGCTGCGTTGTCTCTG+TGG | + | chr6.4:63170039-63170058 | MS.gene66339:intron | 50.0% | |
| GTATCCATGCGTCTGTGTAC+CGG | + | chr6.4:63170312-63170331 | MS.gene66339:intron | 50.0% | |
| TCTGCTGCTGGTACCTTAGA+CGG | + | chr6.4:63171497-63171516 | MS.gene66339:CDS | 50.0% | |
| TTGCTGCGCCTTGAGAATCT+AGG | + | chr6.4:63171401-63171420 | MS.gene66339:CDS | 50.0% | |
| ATGTCCGGTACACAGACGCA+TGG | - | chr6.4:63170319-63170338 | None:intergenic | 55.0% | |
| CAAACGGAGCAATCTGCTGC+TGG | + | chr6.4:63171485-63171504 | MS.gene66339:CDS | 55.0% | |
| CAGCAGCAGATTGCTCCGTT+TGG | - | chr6.4:63171487-63171506 | None:intergenic | 55.0% | |
| GCAGAAGTCCCACCTTTGAC+AGG | - | chr6.4:63171737-63171756 | None:intergenic | 55.0% | |
| CGACACACATCGGACAACCG+AGG | + | chr6.4:63170072-63170091 | MS.gene66339:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 63169126 | 63171820 | 63169126 | ID=MS.gene66339 |
| chr6.4 | mRNA | 63169126 | 63171820 | 63169126 | ID=MS.gene66339.t1;Parent=MS.gene66339 |
| chr6.4 | exon | 63169126 | 63169891 | 63169126 | ID=MS.gene66339.t1.exon1;Parent=MS.gene66339.t1 |
| chr6.4 | CDS | 63169126 | 63169891 | 63169126 | ID=cds.MS.gene66339.t1;Parent=MS.gene66339.t1 |
| chr6.4 | exon | 63170633 | 63170685 | 63170633 | ID=MS.gene66339.t1.exon2;Parent=MS.gene66339.t1 |
| chr6.4 | CDS | 63170633 | 63170685 | 63170633 | ID=cds.MS.gene66339.t1;Parent=MS.gene66339.t1 |
| chr6.4 | exon | 63170911 | 63171059 | 63170911 | ID=MS.gene66339.t1.exon3;Parent=MS.gene66339.t1 |
| chr6.4 | CDS | 63170911 | 63171059 | 63170911 | ID=cds.MS.gene66339.t1;Parent=MS.gene66339.t1 |
| chr6.4 | exon | 63171160 | 63171308 | 63171160 | ID=MS.gene66339.t1.exon4;Parent=MS.gene66339.t1 |
| chr6.4 | CDS | 63171160 | 63171308 | 63171160 | ID=cds.MS.gene66339.t1;Parent=MS.gene66339.t1 |
| chr6.4 | exon | 63171396 | 63171820 | 63171396 | ID=MS.gene66339.t1.exon5;Parent=MS.gene66339.t1 |
| chr6.4 | CDS | 63171396 | 63171820 | 63171396 | ID=cds.MS.gene66339.t1;Parent=MS.gene66339.t1 |
| Gene Sequence |
| Protein sequence |
