AlfalfaGEDB | MS.gene66953

M. sativa cultivar XinJiangDaYe / MS.gene66953

KEGG: K22733
GO: GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0016021 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0046873 GO:0051179 GO:0051234 GO:0070838 GO:0072511 GO:0110165
PFAM: PF05653.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66953.t1	XP_013451595.1	98.8	338	4	0	1	338	32	369	2.30E-178	634.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66953.t1	Q8RWF4	75.4	341	79	3	1	338	32	370	5.4e-136	485.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66953.t1	A0A072U945	98.8	338	4	0	1	338	32	369	1.6e-178	634.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04998	MS.gene66953	0.825706	4.05E-54	-1.69E-46
MS.gene050414	MS.gene66953	0.815495	8.98E-52	-1.69E-46
MS.gene051279	MS.gene66953	0.80286	4.59E-49	-1.69E-46
MS.gene052016	MS.gene66953	0.842907	1.94E-58	-1.69E-46
MS.gene052463	MS.gene66953	0.805411	1.35E-49	-1.69E-46
MS.gene052493	MS.gene66953	0.821126	4.77E-53	-1.69E-46
MS.gene054178	MS.gene66953	0.813952	1.97E-51	-1.69E-46
MS.gene054641	MS.gene66953	0.81604	6.79E-52	-1.69E-46
MS.gene054892	MS.gene66953	0.85728	1.82E-62	-1.69E-46
MS.gene054893	MS.gene66953	0.855991	4.35E-62	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66953.t1	MTR_6g033100	98.817	338	4	0	1	338	32	369	0.0	677
MS.gene66953.t1	MTR_3g083960	20.205	292	217	2	21	312	50	325	6.95e-14	72.0
MS.gene66953.t1	MTR_4g074050	19.557	271	198	4	26	293	54	307	6.66e-12	65.9
MS.gene66953.t1	MTR_2g006070	21.708	281	195	3	21	293	60	323	2.99e-11	64.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66953.t1	AT3G26670	75.073	341	80	3	1	338	32	370	0.0	508
MS.gene66953.t1	AT3G26670	75.073	341	80	3	1	338	32	370	0.0	508
MS.gene66953.t1	AT3G26670	75.073	341	80	3	1	338	32	370	0.0	508
MS.gene66953.t1	AT3G26670	75.073	341	80	3	1	338	32	370	0.0	508
MS.gene66953.t1	AT2G21120	19.322	295	209	5	6	295	36	306	2.39e-11	64.3
MS.gene66953.t1	AT4G09640	21.452	303	216	3	26	328	67	347	5.81e-11	63.5
MS.gene66953.t1	AT1G34470	23.166	259	171	2	26	277	67	304	8.16e-11	63.2

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Find 63 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAGGTATTTGACACGTTA+AGG	0.379853	6.1:-11821586	MS.gene66953:intron
AATAAGAATTGCATCGAACA+TGG	0.577173	6.1:+11823559	None:intergenic
ACACAAAGTAAGCGAATGCG+AGG	0.654505	6.1:+11824756	None:intergenic
ACATGACCTCAAACCCATTT+GGG	0.334317	6.1:-11824126	MS.gene66953:CDS
ACATTCTTCTCAATCTGTAC+AGG	0.494590	6.1:-11823512	MS.gene66953:CDS
ACATTTACTTGGAAGTGATG+GGG	0.654846	6.1:-11825340	MS.gene66953:CDS
ACTGAGAAATAAAAGAAGCA+TGG	0.568619	6.1:+11823712	None:intergenic
AGACATTTACTTGGAAGTGA+TGG	0.463692	6.1:-11825342	MS.gene66953:CDS
AGATATTCTGGTCAAGGCAA+AGG	0.550087	6.1:-11820984	None:intergenic
AGCCAAAGGAAATGAAATTA+AGG	0.313097	6.1:+11825143	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACAAGAATCAGCAACA+TGG	+	chr6.1:11821118-11821137	None:intergenic	30.0%
AACCTTATCTTCATGAAAAC+AGG	-	chr6.1:11824730-11824749	MS.gene66953:intron	30.0%
AATAAGAATTGCATCGAACA+TGG	+	chr6.1:11822777-11822796	None:intergenic	30.0%
ACTGAGAAATAAAAGAAGCA+TGG	+	chr6.1:11822624-11822643	None:intergenic	30.0%
ACTGTGTACTTTATTCCTAA+TGG	-	chr6.1:11822519-11822538	MS.gene66953:intron	30.0%
AGCCAAAGGAAATGAAATTA+AGG	+	chr6.1:11821193-11821212	None:intergenic	30.0%
AGGACAACAATGTTTATACT+TGG	-	chr6.1:11824767-11824786	MS.gene66953:CDS	30.0%
ATCACTCCATTTACAAGTAA+CGG	-	chr6.1:11822079-11822098	MS.gene66953:intron	30.0%
CATATTGTTATAGCAAGTTG+AGG	-	chr6.1:11823448-11823467	MS.gene66953:intron	30.0%
GAAACTACAGCATATGAAAA+CGG	+	chr6.1:11822244-11822263	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.1	gene	11820985	11825370	11820985	ID=MS.gene66953
chr6.1	mRNA	11820985	11825370	11820985	ID=MS.gene66953.t1;Parent=MS.gene66953
chr6.1	exon	11825286	11825370	11825286	ID=MS.gene66953.t1.exon1;Parent=MS.gene66953.t1
chr6.1	CDS	11825286	11825370	11825286	ID=cds.MS.gene66953.t1;Parent=MS.gene66953.t1
chr6.1	exon	11825132	11825193	11825132	ID=MS.gene66953.t1.exon2;Parent=MS.gene66953.t1
chr6.1	CDS	11825132	11825193	11825132	ID=cds.MS.gene66953.t1;Parent=MS.gene66953.t1
chr6.1	exon	11824734	11824819	11824734	ID=MS.gene66953.t1.exon3;Parent=MS.gene66953.t1
chr6.1	CDS	11824734	11824819	11824734	ID=cds.MS.gene66953.t1;Parent=MS.gene66953.t1
chr6.1	exon	11824553	11824626	11824553	ID=MS.gene66953.t1.exon4;Parent=MS.gene66953.t1
chr6.1	CDS	11824553	11824626	11824553	ID=cds.MS.gene66953.t1;Parent=MS.gene66953.t1
chr6.1	exon	11824261	11824363	11824261	ID=MS.gene66953.t1.exon5;Parent=MS.gene66953.t1
chr6.1	CDS	11824261	11824363	11824261	ID=cds.MS.gene66953.t1;Parent=MS.gene66953.t1
chr6.1	exon	11824050	11824178	11824050	ID=MS.gene66953.t1.exon6;Parent=MS.gene66953.t1
chr6.1	CDS	11824050	11824178	11824050	ID=cds.MS.gene66953.t1;Parent=MS.gene66953.t1
chr6.1	exon	11823697	11823796	11823697	ID=MS.gene66953.t1.exon7;Parent=MS.gene66953.t1
chr6.1	CDS	11823697	11823796	11823697	ID=cds.MS.gene66953.t1;Parent=MS.gene66953.t1
chr6.1	exon	11823487	11823606	11823487	ID=MS.gene66953.t1.exon8;Parent=MS.gene66953.t1
chr6.1	CDS	11823487	11823606	11823487	ID=cds.MS.gene66953.t1;Parent=MS.gene66953.t1
chr6.1	exon	11821513	11821603	11821513	ID=MS.gene66953.t1.exon9;Parent=MS.gene66953.t1
chr6.1	CDS	11821513	11821603	11821513	ID=cds.MS.gene66953.t1;Parent=MS.gene66953.t1
chr6.1	exon	11821360	11821426	11821360	ID=MS.gene66953.t1.exon10;Parent=MS.gene66953.t1
chr6.1	CDS	11821360	11821426	11821360	ID=cds.MS.gene66953.t1;Parent=MS.gene66953.t1
chr6.1	exon	11820985	11821081	11820985	ID=MS.gene66953.t1.exon11;Parent=MS.gene66953.t1
chr6.1	CDS	11820985	11821081	11820985	ID=cds.MS.gene66953.t1;Parent=MS.gene66953.t1

Gene Sequence

>MS.gene66953

AGAGAAAGACATTTACTTGGAAGTGATGGGGTACATGGAAAGTTGACTCTGAAGCCTATTATATACTTTCAGAGTTGGAGAATCGGTATGGTGTAATTGCATATATGTATGTGGATTTTTCACATTTTAACCATGTTGCTGATTCTTGTTTTTGGTTGTATAAATTTTGATATGCAGGTATCCTATTTTTCTTTCTTGGAAATTGCCTTAATTTCATTTCCTTTGGCTATGCTGCTCAGGTATGTTTCCATTCCACGATACTTATTGGATGTTTTTCCTAACATATGTAATTTTATGATTGTAGTGTGTAGTAGTTTTACATTATTTTTTAATGAAATTTTAAAACTTTGTAGCACCAAATCTTCTGATCGAAGGCATGTTCAATGTCTGACACGACACCGACACCGACACATGTGAATACATTCAATTATGTCATTTTCTTAAAATACTATGGTGTCGACGTGTCAGTGCCGTGTCCGATGTTCGTGTCAGTGCTTGATAGCCTTAAAAAAAAGTTCATTTGATACCTATGTCTTCTATTTCCTCCGCAGTCACTTCTTGCAGCTTTGGGATCTGTTCAATTTGTATCTAACCTCGCATTCGCTTACTTTGTGTTGAACAAAATGGTGACAGTCAAGTATGTCAAATTTGAATTGAGATTACTGTTTCATTTTTCCTTTTCACCAAAATTGTTCTACCAATGTAAATTCTTGTGGCTTAATTTAATATTTGTCCTTTAAACAGGGTATTGGTTGCCACAGCTTTCATTGTTCTTGGAAATGTTTTTCTAGTTGCGTTTGGAAATCACCAATCACCTGGTATGTAACTTATTTCATAGTTCAATCAAAACATTGATTCTATGTTTCCTTGTGAAATCAATGTTCATATGTTAATTAAGCTGATAGCCATATTAAGCTTCAGAAAAAAATGTCATATTATCATTAAGAGAAAAAATGCTCATTTCAATGGTGCAAACTAATTTATGTGACGGTCTGCTTGTGTTTCAGTATATACTCCAGAGCAGTTGACAGAGAAATATACCAATGTCGCGTTCCTTCTGTACCTTTTAGCTTTGATTGTAATTGTCGTCTTGCATCACTCCATTTACAAGTAACGGCTAAGATTTAATTATTTGTTATTAGTTCAATTCAACAAAATAAAAATCGTTTTGATTAAAATGTGAAATGTGCAGGCGAGGTGAACTTCTGCTTGCTATATCAGGACATGACCTCAAACCCATTTGGGGTATGCTATTGCCGTTTTCATATGCTGTAGTTTCGGGGGCTATAGGTTCATGCTCAGTGTTGTTCGCCAAATCACTGTAAGTCTGCTACTCTGACACGCTGTCATGCTTCATGACCTTTGCAGCACCGACACCTTTGATGGAAAGTGTCTCCGGTGTCCGACGCGTCTACACGACACCGACACCGACACATGATTACATTTAATTAATTAATTTTTCAAATTTTTTACGGATGTGTCAGTGTCTTGGTGTCCGTGTCAGTGCTTAGTAGTTCATGACGCAATAACAATGACTGTGTACTTTATTCCTAATGGCAACTTCATTTTGGCAGTTCTAACCTCTTACGACTGGCTATGTCTAATGGCTATCAGCTGCACAGCTGGTTCACGTATTCCATGCTTCTTTTATTTCTCAGTACTGCTGGATTTTGGGTAAGGCCTATTTTTCGGTAAAAAAAATTCTTAGGACCTTCATCAATGTTTGCAGATGTTTTGATTTCTTAAACTTTTCTAATTTTGCAGATGACTAGGTTGAATGAAGGACTATCCATGTTCGATGCAATTCTTATTGTTCCCATGTTTCAAATAGCATGGACATTCTTCTCAATCTGTACAGGATTTATATATTTTCAGGAATATCAGGTAATTTCACGTCTAGTTATACATATTATAAACTTATTTAATCTTCTCAATCTGTACATTTATAGCTTCTCCTTGCCACGGACACTCGAAGAAGTTAAAATCAAACTTATGGAAAAATTATCTACTCCTACTTTGATGAAATGGACTCCCTTAGGATATATATTTAAGAACCTAAAATTCATAAGTCTACTCTTACTTTGGTGAATTATATTTAGCTGACAGATTAAGCCCATTGTATTTGTAATATTAAAATATGTCGCTTAGTAACTCAAGATATGAAATTGAGAGAAACATATCATGCAAAAACTCGACTTCCATATCATCGCTGAAATAATTTCAAAATACTTGGTTTGGTAGTGTTATTGGTAGATGTGGCAGTTACGAAAGGGTGGTGTTGTTTGGAAGAGATGTGAAAAGTGAGTCACTACATACCTGTCATTAGCAGCGATCTAGTATTCCCCAACAAATAGGGGGTCAGCAAAGTAGGTTGGGAGGTAGTTTCTGAGTAAGAATTCGGCTAGAAGAGAATATGGGGTGTTTAAAAATTCAGCCATGTCTGTGTGTATACTTCCTAGGTACCATATTGTTATAGCAAGTTGAGGTAGCAATCGTTGGCACATTCAGGAATGAGAGGTCAAGCCCTCGTTTTTACAATCCATTAGAGGTGCTAGCGAAGGTAGGATCAGGGGCTTATATGTTGCTATTTCCTGGGACCGACGGAATTGGAAGACATCCTTGCTCTTCAAGACAATAGTCAGTGAGCTGCTGATTAAATCGGCATATCTCCGGACTGTGACAACTATGGGAATCTTTTGAGGCCTTACAAAAGACCTTATTTTCCTCTTGAGGACAAGGTGAACGTTTTATGGAGAAGTACTTATAGGTACACGGCAGCTACGAAAGCATTTGTGAAGAGGAGTCATAAGAAGCGCGATAACTAATTGTAAATGAAATTGAAATACTATAAATAGGGGGTTTAGCAGAGTAGGTAGTTAGTTACTGGGAACGAATTCAGTTAGGAAAAGAGATAACACAGGTGCCCATGAATTCGCCCAGGTCTGAATGTATGGTTTTGTCCCCTATCCTTCTATCATCTCTGTTTTTCGATTTTTCTATACTAGTGAAACTATCAGTTTGTATAACTATTCAATATGCAATTACATGTAATCAGGCCAAGATATACACAATACACTGGCAAATGTATTAGTGTGTTTTTTATGAAAATGTTTTTTTAGATAACTTAATATGAGAAATATTAAAGGGTATATTAGGAAAGTACACTATTAAAGGGTATATTAAATACTTTTCTAAATTCATTGAGTTAACTAGGATTATAGATTGAAAATTTTAGGGATGCAAATGGGACACGGCAATATGGATTGTTGACGAACCTTGCATGATGATTCTTAACTGTACTTTTATTTTAATTTTAACTTTGTAAGTTTTGTTCAGATGGTTGAAACCAACTTTGATTATTATGAAGTAGTCGTAAAATTACGAAGAACGTAAACTCGATAGGATTTTTCTAATGAATAGCGGCAAAATTTTGAAGAACATGAACTTGACTGCATGCCTGCTAGGTGAGGTATGCGGCTAATAACTGCTCCATAACTCCGTTTATTCTTAATAAGTAGACATCCTTCCGGAACCTCCTAGTATGCTTTCTGTTAAGGACAACAATGTTCTTCTACTTATTTCACATTCAAGAAGTATCAATTCAAATTAGTTTTCTAATTCATATTTGTGTACCTATCACTTCTACAACTTTTATTTTTTATTTTAATTTTTGTTTGATGAATATTAGTATCGTTGCTTTGATAAATACTGAATGTTTTTTCATAATAAATTTAGGTGTCGTCTAAACCTTATCTTCATGAAAACAGGTATTTGACACGTTAAGGACAACAATGTTTATACTTGGAATGATGTGTGTGTTCATTGGTATTTCTTTGCTGGCACCTGATGAATCAAAAGGTATTATAAATACAAAATTGTTTTAAGGTTTTACTATAAACCGAGGTATTCAAAGGTTAATATGTAACTTGTTCTAAATGTTTCAGTTTCTGAGACTAAAGATAGTTCTTTGGATTCCGTAGTGTCTCCTGCCATTTCAACAGAAACAAAGAGGTATGATACGAAATCTTTAACTACCAAAAGTGAACAATTATCATATTTAAAAGACGTCCCTGAAAGGAAACTAAATGATTGAAGTACTATTATATTATCGTTATCATCAAAATATCTGTTAAGAAACTTCTAGTATATTCTTCTCTTCTGCTTTGATCTTTTAAGAAGAAAAACGTCAATTTTTTTTAAACACAATTTGATTTCGTCGTGATGCTTAAGCACATGTTGCTTATTATGGGCGACTTTCACTAATGCCAATACTGTTTTATCTGATATAGGCTAGTAGCATCGTCCGAAGAAGCACACAGCAAAGACGCGAGATCTTTTGTCAAGGGAGTCTTGATAAAGATTACAGATATTCTGGTCAAGGCAAAG

Protein sequence

>MS.gene66953.t1

RERHLLGSDGVHGKLTLKPIIYFQSWRIGILFFFLGNCLNFISFGYAAQSLLAALGSVQFVSNLAFAYFVLNKMVTVKVLVATAFIVLGNVFLVAFGNHQSPVYTPEQLTEKYTNVAFLLYLLALIVIVVLHHSIYKRGELLLAISGHDLKPIWGMLLPFSYAVVSGAIGSCSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFLSTAGFWMTRLNEGLSMFDAILIVPMFQIAWTFFSICTGFIYFQEYQVFDTLRTTMFILGMMCVFIGISLLAPDESKVSETKDSSLDSVVSPAISTETKRLVASSEEAHSKDARSFVKGVLIKITDILVKAK