AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene67596


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67596.t1 MTR_5g023180 92.216 334 20 2 1 333 1 329 0.0 543
MS.gene67596.t1 MTR_5g023180 90.419 334 25 3 1 333 1 328 0.0 540
MS.gene67596.t1 MTR_5g023180 88.542 288 26 3 1 287 1 282 3.31e-154 434
MS.gene67596.t1 MTR_5g023180 88.983 236 20 2 1 235 1 231 6.17e-122 350
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67596.t1 AT4G35760 58.095 315 107 4 41 333 37 348 2.52e-121 354
MS.gene67596.t1 AT4G35760 58.095 315 107 4 41 333 37 348 5.84e-121 353

Find 92 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATCAGTTGAGGAGGTTTC+TGG 0.145576 5.2:+14460592 None:intergenic
TTCCCCACATGGATTATTAA+TGG 0.246472 5.2:-14457490 MS.gene67596:CDS
GATTCCTGAGATTAGCTTAT+AGG 0.278635 5.2:+14460567 None:intergenic
GGTGTACCTCTTCCTTTGAT+TGG 0.284171 5.2:-14459721 MS.gene67596:CDS
CTAAAATGTATGGAGCTTTC+TGG 0.298863 5.2:-14458219 MS.gene67596:CDS
GTAATCTCGGTTGCAAAATA+TGG 0.311759 5.2:+14458298 None:intergenic
ACAAAGAAGAATTTACCTTT+TGG 0.320249 5.2:-14459652 MS.gene67596:CDS
CAATAGGAGCAAGATGATTC+AGG 0.349539 5.2:+14459532 None:intergenic
GTGTACCTCTTCCTTTGATT+GGG 0.355997 5.2:-14459720 MS.gene67596:CDS
GGGTTCGGTCTGGGTTGGTT+CGG 0.374341 5.2:+14460679 None:intergenic
ATAATCACTATTGAGTATAT+TGG 0.375771 5.2:+14460453 None:intergenic
TTGCTCCTATTGCCTACTTT+CGG 0.377075 5.2:-14459521 MS.gene67596:CDS
ATCTCAGGAATCGCCGGAAT+CGG 0.386284 5.2:-14460556 MS.gene67596:CDS
GCAAGGTATTTGCATTCAAT+AGG 0.389958 5.2:-14458244 MS.gene67596:CDS
GCAAGAGAAGTACAAACAAC+TGG 0.391109 5.2:-14459353 MS.gene67596:CDS
GACAAAGCAAAGGGGCTTGA+TGG 0.394543 5.2:+14458271 None:intergenic
CATCGGAGCCGGTGAACTTA+AGG 0.397674 5.2:+14460506 None:intergenic
GGTTTCGATGAATCCGATTC+CGG 0.399135 5.2:+14460543 None:intergenic
TTTCTGGTGTTCACACTGTC+TGG 0.401462 5.2:-14458203 MS.gene67596:CDS
TGCTTAGACGCTAAAATTGA+AGG 0.402247 5.2:-14457514 MS.gene67596:CDS
AACTTCTCGATACAGATGTT+TGG 0.404936 5.2:-14457616 MS.gene67596:intron
ACCTCTTCCTTTGATTGGGA+TGG 0.417711 5.2:-14459716 MS.gene67596:CDS
GAGAACCGAAAGTAGGCAAT+AGG 0.426376 5.2:+14459516 None:intergenic
GCAGTTGTTTATTGCTAGCT+TGG 0.427082 5.2:-14459326 MS.gene67596:CDS
AATGCTCAATTAGTATTGCT+TGG 0.431355 5.2:-14459616 MS.gene67596:CDS
GAGCAAGTGCCACCGCCGAC+AGG 0.433146 5.2:+14460475 None:intergenic
CTTGTACAAAGGGTTCGGTC+TGG 0.436938 5.2:+14460669 None:intergenic
TTGTACAAAGGGTTCGGTCT+GGG 0.437192 5.2:+14460670 None:intergenic
GTCTGGGTTGGTTCGGAGAA+CGG 0.440846 5.2:+14460686 None:intergenic
CTCTTCTCGTTTCTTCGCAC+CGG 0.443701 5.2:-14460719 MS.gene67596:CDS
TCAATAGGAGCTAAAATGTA+TGG 0.450745 5.2:-14458229 MS.gene67596:CDS
GTCTTCTGCCCTGTCGGCGG+TGG 0.451403 5.2:-14460484 MS.gene67596:CDS
CAGAAACCTCCTCAACTGAT+TGG 0.455868 5.2:-14460591 MS.gene67596:CDS
ACGTGAGGCGGCGAAGCAAT+TGG 0.470992 5.2:-14457593 MS.gene67596:CDS
GGTGACAATTCTTGTACAAA+GGG 0.475927 5.2:+14460659 None:intergenic
GAAATGCTCCTCTTCATCTT+CGG 0.480605 5.2:-14460617 MS.gene67596:CDS
CAATTCTTGTACAAAGGGTT+CGG 0.481586 5.2:+14460664 None:intergenic
GTTCCTGTTCGATATCCGTC+AGG 0.487353 5.2:+14457553 None:intergenic
GGTAGAATTAGCACTGCTAT+AGG 0.491448 5.2:+14459282 None:intergenic
TTGGATCTGTTAACCCCAAA+AGG 0.493640 5.2:+14459637 None:intergenic
CTTGCTTACCTTAAGTTCAC+CGG 0.499908 5.2:-14460514 MS.gene67596:CDS
AGGTGACAATTCTTGTACAA+AGG 0.500035 5.2:+14460658 None:intergenic
CACATGGATTATTAATGGCC+AGG 0.503308 5.2:-14457485 MS.gene67596:CDS
TTTCCTGACGGATATCGAAC+AGG 0.504131 5.2:-14457556 MS.gene67596:CDS
AGCACTAGCAGTTGCCATTG+AGG 0.509543 5.2:+14459585 None:intergenic
CCTTTGCTTTGTCTCTAGCA+AGG 0.512217 5.2:-14458261 MS.gene67596:CDS
AAGCAATACTAATTGAGCAT+TGG 0.514041 5.2:+14459618 None:intergenic
GGAGAACGGTTTAAACGAAC+CGG 0.514067 5.2:+14460700 None:intergenic
TGTGAGAATGAATAACGAAA+AGG 0.525624 5.2:+14459489 None:intergenic
GCTTGGAAGCACAACCTCAA+TGG 0.530217 5.2:-14459599 MS.gene67596:CDS
ACAAAGGGTTCGGTCTGGGT+TGG 0.532809 5.2:+14460674 None:intergenic
ACAAGAATTGTCACCTTCAG+AGG 0.535413 5.2:-14460651 MS.gene67596:CDS
CTTGCTAGAGACAAAGCAAA+GGG 0.535414 5.2:+14458262 None:intergenic
AAATTGAAGGTTTCCCCACA+TGG 0.537433 5.2:-14457501 MS.gene67596:CDS
AAGCTAATCTCAGGAATCGC+CGG 0.538082 5.2:-14460562 MS.gene67596:CDS
GTTATTCATTCTCACACTCA+AGG 0.544153 5.2:-14459482 MS.gene67596:intron
TCCGATGTCTTCTGCCCTGT+CGG 0.546966 5.2:-14460490 MS.gene67596:CDS
TGGACCTATAAGCTAATCTC+AGG 0.548745 5.2:-14460571 MS.gene67596:CDS
AGCAAGTGCCACCGCCGACA+GGG 0.551052 5.2:+14460476 None:intergenic
TGATGTCTACTTTAGCAGCA+TGG 0.552378 5.2:-14458335 MS.gene67596:intron
AACATAAGACATTCTTTACC+TGG 0.556065 5.2:+14457467 None:intergenic
GCCATCCCAATCAAAGGAAG+AGG 0.559625 5.2:+14459715 None:intergenic
TTCTGGTTCCGAAGATGAAG+AGG 0.564283 5.2:+14460609 None:intergenic
GAAGAGGAGCATTTCAGAGG+TGG 0.566119 5.2:+14460625 None:intergenic
AGGGCAGAAGACATCGGAGC+CGG 0.571695 5.2:+14460495 None:intergenic
GATGAAGAGGAGCATTTCAG+AGG 0.577501 5.2:+14460622 None:intergenic
CTTATAGGTCCAATCAGTTG+AGG 0.580977 5.2:+14460582 None:intergenic
CAAGAGAAGTACAAACAACT+GGG 0.583508 5.2:-14459352 MS.gene67596:CDS
AGGACAAGAGAACCGAAAGT+AGG 0.584444 5.2:+14459509 None:intergenic
ATAGGTCCAATCAGTTGAGG+AGG 0.590947 5.2:+14460585 None:intergenic
GCTTGATGGAGTTGTAATCT+CGG 0.593784 5.2:+14458285 None:intergenic
GCCGACAGGGCAGAAGACAT+CGG 0.598595 5.2:+14460489 None:intergenic
TACGCAGCCATCCCAATCAA+AGG 0.601856 5.2:+14459709 None:intergenic
AGAATTAGCACTGCTATAGG+AGG 0.607313 5.2:+14459285 None:intergenic
TGGCCATTAATAATCCATGT+GGG 0.611279 5.2:+14457487 None:intergenic
GATGTCTTCTGCCCTGTCGG+CGG 0.613554 5.2:-14460487 MS.gene67596:CDS
CGGTGAACTTAAGGTAAGCA+AGG 0.623060 5.2:+14460515 None:intergenic
GCAGTGCTAATTCTACCTCA+AGG 0.623222 5.2:-14459276 MS.gene67596:intron
GCGAAGAAACGAGAAGAGGA+AGG 0.634644 5.2:+14460724 None:intergenic
CTGGCCATTAATAATCCATG+TGG 0.635561 5.2:+14457486 None:intergenic
CGGTGCGAAGAAACGAGAAG+AGG 0.639817 5.2:+14460720 None:intergenic
TCAGAGGTGGAAACCTCTGA+AGG 0.641484 5.2:+14460638 None:intergenic
ACAGATGTTTGGACGTGAGG+CGG 0.647976 5.2:-14457605 MS.gene67596:intron
GATACAGATGTTTGGACGTG+AGG 0.652504 5.2:-14457608 MS.gene67596:intron
CCTTGCTAGAGACAAAGCAA+AGG 0.653967 5.2:+14458261 None:intergenic
GGCGAAGCAATTGGATTACG+TGG 0.657076 5.2:-14457584 MS.gene67596:CDS
GGCCATTAATAATCCATGTG+GGG 0.662317 5.2:+14457488 None:intergenic
CTTAAGGTAAGCAAGGTACG+AGG 0.662511 5.2:+14460522 None:intergenic
TGATAGTGTTGTAACAGTGA+AGG 0.677955 5.2:+14460747 None:intergenic
TAGTGTTGTAACAGTGAAGG+TGG 0.684390 5.2:+14460750 None:intergenic
AGATGATTCAGGAAACGCTG+TGG 0.726566 5.2:+14459543 None:intergenic
TTGCTAGAGACAAAGCAAAG+GGG 0.737943 5.2:+14458263 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATGGAAATTTCAAAAA+GGG + chr5.2:14458831-14458850 None:intergenic 15.0%
!! TTGATATTATCTACTTATAT+AGG + chr5.2:14458073-14458092 None:intergenic 15.0%
!!! CATAGTTATTTAAAACTTAA+AGG + chr5.2:14458310-14458329 None:intergenic 15.0%
!! AAAAAGGAAATAGAAAAAGT+TGG + chr5.2:14458788-14458807 None:intergenic 20.0%
!! AAATAGAAGTTAGTTAGTTA+AGG + chr5.2:14457815-14457834 None:intergenic 20.0%
!! AAATATTGTGTTAATGAAAG+TGG - chr5.2:14458458-14458477 MS.gene67596:intron 20.0%
!! ATAATCACTATTGAGTATAT+TGG + chr5.2:14457766-14457785 None:intergenic 20.0%
!! ATTACCAAGAATAGAAAAAT+AGG + chr5.2:14460543-14460562 None:intergenic 20.0%
!! CTAAAATGGAAATTTCAAAA+AGG + chr5.2:14458832-14458851 None:intergenic 20.0%
!! TATAACACAAACTAAAGTTA+TGG + chr5.2:14460296-14460315 None:intergenic 20.0%
!!! AAAAGCATCAAATAAAACAT+AGG + chr5.2:14458403-14458422 None:intergenic 20.0%
!!! CTATTTTCACAAATTATTAC+CGG + chr5.2:14458142-14458161 None:intergenic 20.0%
!!! CTTTTTGAAATTTCCATTTT+AGG - chr5.2:14458830-14458849 MS.gene67596:intron 20.0%
! AAAGCACAAAAAATACATGA+AGG + chr5.2:14459252-14459271 None:intergenic 25.0%
! AAGCACAAAAAATACATGAA+GGG + chr5.2:14459251-14459270 None:intergenic 25.0%
! ACATTATCAAAACTACTTGA+GGG + chr5.2:14459506-14459525 None:intergenic 25.0%
! AGCTTAGAAAAAAGGAATAT+TGG + chr5.2:14459151-14459170 None:intergenic 25.0%
! AGGAATGTATCTTTCAAAAA+AGG - chr5.2:14460343-14460362 MS.gene67596:intron 25.0%
! AGTTATCAAAATCAAACTTC+AGG - chr5.2:14460323-14460342 MS.gene67596:intron 25.0%
! ATAACCATTTATCATAGAAC+TGG - chr5.2:14457879-14457898 MS.gene67596:intron 25.0%
! CAAATAATAGCAAATGGAAA+TGG - chr5.2:14459477-14459496 MS.gene67596:intron 25.0%
! TACATTATCAAAACTACTTG+AGG + chr5.2:14459507-14459526 None:intergenic 25.0%
! TTCAATTGGATTCGTATATT+TGG - chr5.2:14460410-14460429 MS.gene67596:intron 25.0%
! TTTCAAGCTTCTTAAAATCA+CGG - chr5.2:14460152-14460171 MS.gene67596:intron 25.0%
!! AAAGAAGAATTTACCTTTTG+GGG - chr5.2:14458566-14458585 MS.gene67596:intron 25.0%
!! ACAAAGAAGAATTTACCTTT+TGG - chr5.2:14458564-14458583 MS.gene67596:intron 25.0%
!! CAAAGAAGAATTTACCTTTT+GGG - chr5.2:14458565-14458584 MS.gene67596:intron 25.0%
!! TTTCATGAGATTTTACATTC+AGG - chr5.2:14459096-14459115 MS.gene67596:intron 25.0%
!!! AAATTTCCATTTTAGGACAT+TGG - chr5.2:14458837-14458856 MS.gene67596:intron 25.0%
!!! TCAACCTATTTTTCTATTCT+TGG - chr5.2:14460536-14460555 MS.gene67596:CDS 25.0%
!!! TTTTTCTTTAAGGCTTTTAC+AGG + chr5.2:14459439-14459458 None:intergenic 25.0%
AAAATCCTCAATAAAATGCC+GGG + chr5.2:14459638-14459657 None:intergenic 30.0%
AACATAAGACATTCTTTACC+TGG + chr5.2:14460752-14460771 None:intergenic 30.0%
AAGCAATACTAATTGAGCAT+TGG + chr5.2:14458601-14458620 None:intergenic 30.0%
AATGCTCAATTAGTATTGCT+TGG - chr5.2:14458600-14458619 MS.gene67596:intron 30.0%
ACTTGTATAATGTCATCACA+TGG - chr5.2:14459692-14459711 MS.gene67596:CDS 30.0%
ATACAGTAATATTCACCTTG+AGG + chr5.2:14458958-14458977 None:intergenic 30.0%
ATCCTTCAAAATTTGGTCAT+AGG + chr5.2:14459607-14459626 None:intergenic 30.0%
ATTGATGCTAGTATTTCACT+AGG - chr5.2:14459046-14459065 MS.gene67596:intron 30.0%
CAAAATCCTCAATAAAATGC+CGG + chr5.2:14459639-14459658 None:intergenic 30.0%
CAAACATTCAACTGAAAGAA+GGG + chr5.2:14459330-14459349 None:intergenic 30.0%
CAATTGTGATAGCTCATAAA+TGG + chr5.2:14458050-14458069 None:intergenic 30.0%
GGAGTTAATTATGCTTAACA+CGG + chr5.2:14459368-14459387 None:intergenic 30.0%
GTACAAATGTTGTCAAATAG+TGG - chr5.2:14459535-14459554 MS.gene67596:CDS 30.0%
TCAATAGGAGCTAAAATGTA+TGG - chr5.2:14459987-14460006 MS.gene67596:intron 30.0%
TCGGTAGAATGTATTTAATC+TGG - chr5.2:14459207-14459226 MS.gene67596:intron 30.0%
TGATGACATTATACAAGTCA+GGG + chr5.2:14459690-14459709 None:intergenic 30.0%
TGTGAGAATGAATAACGAAA+AGG + chr5.2:14458730-14458749 None:intergenic 30.0%
TTGGCACAAATAATAGCAAA+TGG - chr5.2:14459471-14459490 MS.gene67596:intron 30.0%
! CACTAGGTTGAACAAATTTA+AGG - chr5.2:14459062-14459081 MS.gene67596:intron 30.0%
! CCTTAAAGAAAAAAGTGTAG+TGG - chr5.2:14459446-14459465 MS.gene67596:intron 30.0%
! TTTTATTCATCGCCATTATG+TGG - chr5.2:14459763-14459782 MS.gene67596:intron 30.0%
!! AGAAAAAAGTGTAGTGGATT+TGG - chr5.2:14459452-14459471 MS.gene67596:intron 30.0%
!! ATAAATGGCCATAATTTGCT+GGG + chr5.2:14458035-14458054 None:intergenic 30.0%
!! TATGACCAAATTTTGAAGGA+TGG - chr5.2:14459606-14459625 MS.gene67596:CDS 30.0%
!!! CCACTACACTTTTTTCTTTA+AGG + chr5.2:14459449-14459468 None:intergenic 30.0%
AAATCCTCAATAAAATGCCG+GGG + chr5.2:14459637-14459656 None:intergenic 35.0%
AACTTCTCGATACAGATGTT+TGG - chr5.2:14460600-14460619 MS.gene67596:CDS 35.0%
AAGCTTCTTAAAATCACGGT+GGG - chr5.2:14460156-14460175 MS.gene67596:intron 35.0%
AATTGTAAGATCAGTCAAGC+AGG - chr5.2:14459400-14459419 MS.gene67596:intron 35.0%
ACAAATTATTACCGGTGCAT+AGG + chr5.2:14458134-14458153 None:intergenic 35.0%
ACCTAACTTCAATCTCTGAT+AGG + chr5.2:14459816-14459835 None:intergenic 35.0%
AGCACTAAACTTGCAATTGA+AGG + chr5.2:14458267-14458286 None:intergenic 35.0%
AGGTGACAATTCTTGTACAA+AGG + chr5.2:14457561-14457580 None:intergenic 35.0%
ATAGACGATACCAAAAACGA+CGG + chr5.2:14457790-14457809 None:intergenic 35.0%
ATTCAACTGAAAGAAGGGAT+GGG + chr5.2:14459325-14459344 None:intergenic 35.0%
CAATTCTTGTACAAAGGGTT+CGG + chr5.2:14457555-14457574 None:intergenic 35.0%
CTAAAATGTATGGAGCTTTC+TGG - chr5.2:14459997-14460016 MS.gene67596:intron 35.0%
CTGAAAGCAGCTTAGAAAAA+AGG + chr5.2:14459159-14459178 None:intergenic 35.0%
GAAGCTTGAAATTGTAGAGT+TGG + chr5.2:14460143-14460162 None:intergenic 35.0%
GACACCAACACAATACATAT+CGG + chr5.2:14458214-14458233 None:intergenic 35.0%
GATATTGCCTTGGTTTCAAT+TGG - chr5.2:14460396-14460415 MS.gene67596:intron 35.0%
GCAAACATTCAACTGAAAGA+AGG + chr5.2:14459331-14459350 None:intergenic 35.0%
GCAACCAGTTCTATGATAAA+TGG + chr5.2:14457886-14457905 None:intergenic 35.0%
GGCGATGAATAAAATTCTGT+AGG + chr5.2:14459757-14459776 None:intergenic 35.0%
GGGGAAGTTATTACTAACAA+AGG + chr5.2:14459285-14459304 None:intergenic 35.0%
GGTGACAATTCTTGTACAAA+GGG + chr5.2:14457560-14457579 None:intergenic 35.0%
GTAATCTCGGTTGCAAAATA+TGG + chr5.2:14459921-14459940 None:intergenic 35.0%
GTGATGACATTATACAAGTC+AGG + chr5.2:14459691-14459710 None:intergenic 35.0%
GTTATTCATTCTCACACTCA+AGG - chr5.2:14458734-14458753 MS.gene67596:intron 35.0%
TAAACCAAACACATGCTAAG+TGG - chr5.2:14460215-14460234 MS.gene67596:intron 35.0%
TAACAAACAGGCACTTAGTA+AGG + chr5.2:14460087-14460106 None:intergenic 35.0%
TACGAATCCAATTGAAACCA+AGG + chr5.2:14460406-14460425 None:intergenic 35.0%
TAGAAATAAGCTGCAACGTA+TGG - chr5.2:14457987-14458006 MS.gene67596:intron 35.0%
TCCTATCAGAGATTGAAGTT+AGG - chr5.2:14459812-14459831 MS.gene67596:intron 35.0%
TGCAATCCAATGTCCTAAAA+TGG + chr5.2:14458846-14458865 None:intergenic 35.0%
TGCTTAGACGCTAAAATTGA+AGG - chr5.2:14460702-14460721 MS.gene67596:CDS 35.0%
TGGCCATTAATAATCCATGT+GGG + chr5.2:14460732-14460751 None:intergenic 35.0%
TGTCAAACACTAATGCATGT+TGG - chr5.2:14458230-14458249 MS.gene67596:CDS 35.0%
! CAAGAGAAGTACAAACAACT+GGG - chr5.2:14458864-14458883 MS.gene67596:intron 35.0%
! CATAAATGGCCATAATTTGC+TGG + chr5.2:14458036-14458055 None:intergenic 35.0%
! CGGCATTTTATTGAGGATTT+TGG - chr5.2:14459637-14459656 MS.gene67596:CDS 35.0%
! GCAAGGTATTTGCATTCAAT+AGG - chr5.2:14459972-14459991 MS.gene67596:intron 35.0%
! TAAGTGCCTGTTTGTTAACA+CGG - chr5.2:14460090-14460109 MS.gene67596:intron 35.0%
! TGATAGTGTTGTAACAGTGA+AGG + chr5.2:14457472-14457491 None:intergenic 35.0%
! TTCCCCACATGGATTATTAA+TGG - chr5.2:14460726-14460745 MS.gene67596:CDS 35.0%
! TTGTAGAGTTGGTCAAAACT+CGG + chr5.2:14460132-14460151 None:intergenic 35.0%
!! AATGAAAGTGGTTTTGCATC+TGG - chr5.2:14458470-14458489 MS.gene67596:intron 35.0%
!! AGCTTATTTCTAAGCTCTCT+AGG + chr5.2:14457979-14457998 None:intergenic 35.0%
!! GATTCCTGAGATTAGCTTAT+AGG + chr5.2:14457652-14457671 None:intergenic 35.0%
!! TGTTGACTTCGATATGACAT+CGG - chr5.2:14459188-14459207 MS.gene67596:intron 35.0%
AAAAAGGACTCACTCTCTCA+TGG - chr5.2:14460359-14460378 MS.gene67596:intron 40.0%
AAATTGAAGGTTTCCCCACA+TGG - chr5.2:14460715-14460734 MS.gene67596:CDS 40.0%
AATTACGCAGCGACACAAAA+AGG + chr5.2:14458804-14458823 None:intergenic 40.0%
ACAAGAATTGTCACCTTCAG+AGG - chr5.2:14457565-14457584 MS.gene67596:CDS 40.0%
ACATTCAGGCTTATAGCTCA+TGG - chr5.2:14459110-14459129 MS.gene67596:intron 40.0%
AGAATTAGCACTGCTATAGG+AGG + chr5.2:14458934-14458953 None:intergenic 40.0%
ATGTTGTCAAATAGTGGCGA+TGG - chr5.2:14459541-14459560 MS.gene67596:CDS 40.0%
ATTCCTCTGCTATAGCCTAT+AGG - chr5.2:14460480-14460499 MS.gene67596:CDS 40.0%
ATTGCAAGTTTAGTGCTACG+TGG - chr5.2:14458270-14458289 MS.gene67596:CDS 40.0%
CAAAATTTGGTCATAGGCGT+TGG + chr5.2:14459601-14459620 None:intergenic 40.0%
CAAGCTTCTTAAAATCACGG+TGG - chr5.2:14460155-14460174 MS.gene67596:intron 40.0%
CAAGTCAGGGTTATTGATAG+AGG + chr5.2:14459677-14459696 None:intergenic 40.0%
CAATAGGAGCAAGATGATTC+AGG + chr5.2:14458687-14458706 None:intergenic 40.0%
CATTCAACTGAAAGAAGGGA+TGG + chr5.2:14459326-14459345 None:intergenic 40.0%
CTCTACTGTGATATGCCTAT+AGG + chr5.2:14460498-14460517 None:intergenic 40.0%
CTGGCCATTAATAATCCATG+TGG + chr5.2:14460733-14460752 None:intergenic 40.0%
CTTATAGGTCCAATCAGTTG+AGG + chr5.2:14457637-14457656 None:intergenic 40.0%
CTTGCTAGAGACAAAGCAAA+GGG + chr5.2:14459957-14459976 None:intergenic 40.0%
CTTGCTTACCTTAAGTTCAC+CGG - chr5.2:14457702-14457721 MS.gene67596:intron 40.0%
GAAATGCTCCTCTTCATCTT+CGG - chr5.2:14457599-14457618 MS.gene67596:CDS 40.0%
GACACCGATATGTATTGTGT+TGG - chr5.2:14458207-14458226 MS.gene67596:CDS 40.0%
GCAGTTGTTTATTGCTAGCT+TGG - chr5.2:14458890-14458909 MS.gene67596:intron 40.0%
GCTAACTAACTGCCACATAA+TGG + chr5.2:14459778-14459797 None:intergenic 40.0%
GCTTGATGGAGTTGTAATCT+CGG + chr5.2:14459934-14459953 None:intergenic 40.0%
GGCCATTAATAATCCATGTG+GGG + chr5.2:14460731-14460750 None:intergenic 40.0%
GGTAGAATTAGCACTGCTAT+AGG + chr5.2:14458937-14458956 None:intergenic 40.0%
GTGTACCTCTTCCTTTGATT+GGG - chr5.2:14458496-14458515 MS.gene67596:intron 40.0%
TAGTGTTGTAACAGTGAAGG+TGG + chr5.2:14457469-14457488 None:intergenic 40.0%
TATGCTTAACACGGTGAGTT+CGG + chr5.2:14459359-14459378 None:intergenic 40.0%
TGAAAGAAGGGATGGGATAA+GGG + chr5.2:14459318-14459337 None:intergenic 40.0%
TGATGTCTACTTTAGCAGCA+TGG - chr5.2:14459881-14459900 MS.gene67596:intron 40.0%
TGCTGCCATCCTTCAAAATT+TGG + chr5.2:14459614-14459633 None:intergenic 40.0%
TGGACCTATAAGCTAATCTC+AGG - chr5.2:14457645-14457664 MS.gene67596:intron 40.0%
TGTTCCACTTAGCATGTGTT+TGG + chr5.2:14460222-14460241 None:intergenic 40.0%
TTGCTAGAGACAAAGCAAAG+GGG + chr5.2:14459956-14459975 None:intergenic 40.0%
TTGCTCCTATTGCCTACTTT+CGG - chr5.2:14458695-14458714 MS.gene67596:intron 40.0%
TTGGATCTGTTAACCCCAAA+AGG + chr5.2:14458582-14458601 None:intergenic 40.0%
! ACACAGTGTTGAGTTGTGAT+TGG - chr5.2:14458345-14458364 MS.gene67596:intron 40.0%
! ACACTGTCTGGAACAAAAAG+AGG - chr5.2:14460025-14460044 MS.gene67596:intron 40.0%
! ATACATATCGGTGTCTGACA+CGG + chr5.2:14458202-14458221 None:intergenic 40.0%
! ATGTGGCAGTTAGTTAGCTT+TGG - chr5.2:14459780-14459799 MS.gene67596:intron 40.0%
! CACATGGATTATTAATGGCC+AGG - chr5.2:14460731-14460750 MS.gene67596:CDS 40.0%
! CGCCTATGACCAAATTTTGA+AGG - chr5.2:14459602-14459621 MS.gene67596:CDS 40.0%
! GCAAGAGAAGTACAAACAAC+TGG - chr5.2:14458863-14458882 MS.gene67596:intron 40.0%
! TACGTGGAATGTTTTCCTGA+CGG - chr5.2:14460648-14460667 MS.gene67596:CDS 40.0%
!! AGTGATTATGCCGTCGTTTT+TGG - chr5.2:14457777-14457796 MS.gene67596:intron 40.0%
AAGCTAATCTCAGGAATCGC+CGG - chr5.2:14457654-14457673 MS.gene67596:intron 45.0%
ACCAAGGCAATATCCTCACA+AGG + chr5.2:14460390-14460409 None:intergenic 45.0%
ACCTCTTCCTTTGATTGGGA+TGG - chr5.2:14458500-14458519 MS.gene67596:intron 45.0%
AGATGATTCAGGAAACGCTG+TGG + chr5.2:14458676-14458695 None:intergenic 45.0%
AGGACAAGAGAACCGAAAGT+AGG + chr5.2:14458710-14458729 None:intergenic 45.0%
ATAGGTCCAATCAGTTGAGG+AGG + chr5.2:14457634-14457653 None:intergenic 45.0%
ATCCCACCGTGTTAACAAAC+AGG + chr5.2:14460099-14460118 None:intergenic 45.0%
ATGCCTATAGGCTATAGCAG+AGG + chr5.2:14460486-14460505 None:intergenic 45.0%
CAATCAGTTGAGGAGGTTTC+TGG + chr5.2:14457627-14457646 None:intergenic 45.0%
CAGAAACCTCCTCAACTGAT+TGG - chr5.2:14457625-14457644 MS.gene67596:intron 45.0%
CCTTGCTAGAGACAAAGCAA+AGG + chr5.2:14459958-14459977 None:intergenic 45.0%
CCTTTGCTTTGTCTCTAGCA+AGG - chr5.2:14459955-14459974 MS.gene67596:intron 45.0%
CGGTGAACTTAAGGTAAGCA+AGG + chr5.2:14457704-14457723 None:intergenic 45.0%
CTGAAAGAAGGGATGGGATA+AGG + chr5.2:14459319-14459338 None:intergenic 45.0%
CTTAAGGTAAGCAAGGTACG+AGG + chr5.2:14457697-14457716 None:intergenic 45.0%
CTTACAATTCTCGACTCAGC+AGG + chr5.2:14459389-14459408 None:intergenic 45.0%
GAGAACCGAAAGTAGGCAAT+AGG + chr5.2:14458703-14458722 None:intergenic 45.0%
GATACAGATGTTTGGACGTG+AGG - chr5.2:14460608-14460627 MS.gene67596:CDS 45.0%
GCAGTGCTAATTCTACCTCA+AGG - chr5.2:14458940-14458959 MS.gene67596:intron 45.0%
GGAGAACGGTTTAAACGAAC+CGG + chr5.2:14457519-14457538 None:intergenic 45.0%
GGATAAGGGAGTAAGCAAAG+GGG + chr5.2:14459304-14459323 None:intergenic 45.0%
GGGATAAGGGAGTAAGCAAA+GGG + chr5.2:14459305-14459324 None:intergenic 45.0%
GGTGTACCTCTTCCTTTGAT+TGG - chr5.2:14458495-14458514 MS.gene67596:intron 45.0%
GGTTTCGATGAATCCGATTC+CGG + chr5.2:14457676-14457695 None:intergenic 45.0%
TAAGCTGCAACGTATGGACT+CGG - chr5.2:14457993-14458012 MS.gene67596:intron 45.0%
TAGCCACTCCCAGCAAATTA+TGG - chr5.2:14458024-14458043 MS.gene67596:intron 45.0%
TCCTTGTGAGGATATTGCCT+TGG - chr5.2:14460386-14460405 MS.gene67596:intron 45.0%
TGGGATAAGGGAGTAAGCAA+AGG + chr5.2:14459306-14459325 None:intergenic 45.0%
! GAGTTGGTCAAAACTCGGTT+TGG + chr5.2:14460127-14460146 None:intergenic 45.0%
! TACATATCGGTGTCTGACAC+GGG + chr5.2:14458201-14458220 None:intergenic 45.0%
! TGCCTGTTTGTTAACACGGT+GGG - chr5.2:14460094-14460113 MS.gene67596:intron 45.0%
! TTGTACAAAGGGTTCGGTCT+GGG + chr5.2:14457549-14457568 None:intergenic 45.0%
! TTTCCTGACGGATATCGAAC+AGG - chr5.2:14460660-14460679 MS.gene67596:CDS 45.0%
! TTTCTGGTGTTCACACTGTC+TGG - chr5.2:14460013-14460032 MS.gene67596:intron 45.0%
!! AAAGTGGTTTTGCATCTGGC+AGG - chr5.2:14458474-14458493 MS.gene67596:intron 45.0%
!! GATGAAGAGGAGCATTTCAG+AGG + chr5.2:14457597-14457616 None:intergenic 45.0%
!! TGGTCAAAACTCGGTTTGGT+GGG + chr5.2:14460123-14460142 None:intergenic 45.0%
!! TTCTGGTTCCGAAGATGAAG+AGG + chr5.2:14457610-14457629 None:intergenic 45.0%
!! TTGGTCAAAACTCGGTTTGG+TGG + chr5.2:14460124-14460143 None:intergenic 45.0%
!!! AGGATTTTGGCTTTCTGCCA+CGG - chr5.2:14459650-14459669 MS.gene67596:CDS 45.0%
AATCACGGTGGGATGTGCAT+TGG - chr5.2:14460167-14460186 MS.gene67596:intron 50.0%
ACAGATGTTTGGACGTGAGG+CGG - chr5.2:14460611-14460630 MS.gene67596:CDS 50.0%
AGCACTAGCAGTTGCCATTG+AGG + chr5.2:14458634-14458653 None:intergenic 50.0%
ATCACGGTGGGATGTGCATT+GGG - chr5.2:14460168-14460187 MS.gene67596:intron 50.0%
ATCTCAGGAATCGCCGGAAT+CGG - chr5.2:14457660-14457679 MS.gene67596:intron 50.0%
CTCTTCTCGTTTCTTCGCAC+CGG - chr5.2:14457497-14457516 MS.gene67596:CDS 50.0%
GACAAAGCAAAGGGGCTTGA+TGG + chr5.2:14459948-14459967 None:intergenic 50.0%
GCCATCCCAATCAAAGGAAG+AGG + chr5.2:14458504-14458523 None:intergenic 50.0%
GCGAAGAAACGAGAAGAGGA+AGG + chr5.2:14457495-14457514 None:intergenic 50.0%
GGCGAAGCAATTGGATTACG+TGG - chr5.2:14460632-14460651 MS.gene67596:CDS 50.0%
GGGTTATTGATAGAGGACCG+TGG + chr5.2:14459670-14459689 None:intergenic 50.0%
GTTCCTGTTCGATATCCGTC+AGG + chr5.2:14460666-14460685 None:intergenic 50.0%
TACGCAGCCATCCCAATCAA+AGG + chr5.2:14458510-14458529 None:intergenic 50.0%
TCAGAGGTGGAAACCTCTGA+AGG + chr5.2:14457581-14457600 None:intergenic 50.0%
TCTCATGGCTACTCCTTGTG+AGG - chr5.2:14460374-14460393 MS.gene67596:intron 50.0%
TCTGTCACCACAATCAGCCA+TGG + chr5.2:14459571-14459590 None:intergenic 50.0%
! AGCACCCCGGCATTTTATTG+AGG - chr5.2:14459630-14459649 MS.gene67596:CDS 50.0%
! CAACGTATGGACTCGGTATC+TGG - chr5.2:14458000-14458019 MS.gene67596:intron 50.0%
! CTTGTACAAAGGGTTCGGTC+TGG + chr5.2:14457550-14457569 None:intergenic 50.0%
! GCTTGGAAGCACAACCTCAA+TGG - chr5.2:14458617-14458636 MS.gene67596:intron 50.0%
! GTGCCTGTTTGTTAACACGG+TGG - chr5.2:14460093-14460112 MS.gene67596:intron 50.0%
!! GAAGAGGAGCATTTCAGAGG+TGG + chr5.2:14457594-14457613 None:intergenic 50.0%
!! TGGCCATAATTTGCTGGGAG+TGG + chr5.2:14458030-14458049 None:intergenic 50.0%
ATGACGCAACGCCTATGCAC+CGG - chr5.2:14458120-14458139 MS.gene67596:intron 55.0%
CATCGGAGCCGGTGAACTTA+AGG + chr5.2:14457713-14457732 None:intergenic 55.0%
CGGTGCGAAGAAACGAGAAG+AGG + chr5.2:14457499-14457518 None:intergenic 55.0%
TCCGATGTCTTCTGCCCTGT+CGG - chr5.2:14457726-14457745 MS.gene67596:intron 55.0%
TTTGAAGGATGGCAGCACCC+CGG - chr5.2:14459617-14459636 MS.gene67596:CDS 55.0%
! ACAAAGGGTTCGGTCTGGGT+TGG + chr5.2:14457545-14457564 None:intergenic 55.0%
!! GTCTGGGTTGGTTCGGAGAA+CGG + chr5.2:14457533-14457552 None:intergenic 55.0%
ACGTGAGGCGGCGAAGCAAT+TGG - chr5.2:14460623-14460642 MS.gene67596:CDS 60.0%
AGGGCAGAAGACATCGGAGC+CGG + chr5.2:14457724-14457743 None:intergenic 60.0%
GATGTCTTCTGCCCTGTCGG+CGG - chr5.2:14457729-14457748 MS.gene67596:intron 60.0%
GCCGACAGGGCAGAAGACAT+CGG + chr5.2:14457730-14457749 None:intergenic 60.0%
!! GGGTTCGGTCTGGGTTGGTT+CGG + chr5.2:14457540-14457559 None:intergenic 60.0%
AGCAAGTGCCACCGCCGACA+GGG + chr5.2:14457743-14457762 None:intergenic 65.0%
ATAGTGGCGATGGCGCGCCA+TGG - chr5.2:14459551-14459570 MS.gene67596:CDS 65.0%
TGGCGCGCCATGGCTGATTG+TGG - chr5.2:14459561-14459580 MS.gene67596:CDS 65.0%
GAGCAAGTGCCACCGCCGAC+AGG + chr5.2:14457744-14457763 None:intergenic 70.0%
GTCTTCTGCCCTGTCGGCGG+TGG - chr5.2:14457732-14457751 MS.gene67596:intron 70.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 14457462 14460776 14457462 ID=MS.gene67596
chr5.2 mRNA 14457462 14460776 14457462 ID=MS.gene67596.t1;Parent=MS.gene67596
chr5.2 exon 14460440 14460776 14460440 ID=MS.gene67596.t1.exon1;Parent=MS.gene67596.t1
chr5.2 CDS 14460440 14460776 14460440 ID=cds.MS.gene67596.t1;Parent=MS.gene67596.t1
chr5.2 exon 14459483 14459742 14459483 ID=MS.gene67596.t1.exon2;Parent=MS.gene67596.t1
chr5.2 CDS 14459483 14459742 14459483 ID=cds.MS.gene67596.t1;Parent=MS.gene67596.t1
chr5.2 exon 14459277 14459386 14459277 ID=MS.gene67596.t1.exon3;Parent=MS.gene67596.t1
chr5.2 CDS 14459277 14459386 14459277 ID=cds.MS.gene67596.t1;Parent=MS.gene67596.t1
chr5.2 exon 14458192 14458342 14458192 ID=MS.gene67596.t1.exon4;Parent=MS.gene67596.t1
chr5.2 CDS 14458192 14458342 14458192 ID=cds.MS.gene67596.t1;Parent=MS.gene67596.t1
chr5.2 exon 14457462 14457623 14457462 ID=MS.gene67596.t1.exon5;Parent=MS.gene67596.t1
chr5.2 CDS 14457462 14457623 14457462 ID=cds.MS.gene67596.t1;Parent=MS.gene67596.t1
Gene Sequence

>MS.gene67596

ATGGCCACCTTCACTGTTACAACACTATCACCTTCCTCTTCTCGTTTCTTCGCACCGGTTCGTTTAAACCGTTCTCCGAACCAACCCAGACCGAACCCTTTGTACAAGAATTGTCACCTTCAGAGGTTTCCACCTCTGAAATGCTCCTCTTCATCTTCGGAACCAGAAACCTCCTCAACTGATTGGACCTATAAGCTAATCTCAGGAATCGCCGGAATCGGATTCATCGAAACCTCGTACCTTGCTTACCTTAAGTTCACCGGCTCCGATGTCTTCTGCCCTGTCGGCGGTGGCACTTGCTCCAATATACTCAATAGTGATTATGCCGTCGTTTTTGGTATCGTCTATTTCCTTAACTAACTAACTTCTATTTGTATGTAGTGTTCGTTATTTATTAATTAATTAAGTGCTTATAGCATAACCATTTATCATAGAACTGGTTGCTTATGAGTCATTTTATGTAACGAAAGTCAAATTGTTTTCATATAAGTTGTAAGCTGTTTTCATTAGTTATCCTAGAGAGCTTAGAAATAAGCTGCAACGTATGGACTCGGTATCTGGTTAGCCACTCCCAGCAAATTATGGCCATTTATGAGCTATCACAATTGCCTATATAAGTAGATAATATCAAATAAGTTAATTCAAACTGTTCTTAATTATGACGCAACGCCTATGCACCGGTAATAATTTGTGAAAATAGAAATGATTGTACATAATTACATTTGTTTGTGTCATGCCCGTGTCAGACACCGATATGTATTGTGTTGGTGTCAAACACTAATGCATGTTGGATACTCACACACCTTCAATTGCAAGTTTAGTGCTACGTGGTCATTTATAACATGCCTTTAAGTTTTAAATAACTATGCTTATTCTATTGAATACACAGTGTTGAGTTGTGATTGGAGAATGATAAAAATTTGACATATAGAACATCACCTATGTTTTATTTGATGCTTTTGTTTTTGCTGTTATGTATTGCACAAATTGTGTTTGAAATATTGTGTTAATGAAAGTGGTTTTGCATCTGGCAGGTGTACCTCTTCCTTTGATTGGGATGGCTGCGTATAGTTTTGTAGCTGCTCTTAGTCTTCAGTTAGCTACAAAGAAGAATTTACCTTTTGGGGTTAACAGATCCAATGCTCAATTAGTATTGCTTGGAAGCACAACCTCAATGGCAACTGCTAGTGCTTATTTTTTGTACATTCTAACCACAGCGTTTCCTGAATCATCTTGCTCCTATTGCCTACTTTCGGTTCTCTTGTCCTTTTCGTTATTCATTCTCACACTCAAGGTGTTCAATGTTAAAAAAACTTTTATTGTCCAACTTTTTCTATTTCCTTTTTGTGTCGCTGCGTAATTGATACCCTTTTTGAAATTTCCATTTTAGGACATTGGATTGCAAGAGAAGTACAAACAACTGGGTTTGCAGTTGTTTATTGCTAGCTTGGTGATTCTTACATTGAACACCTCCTATAGCAGTGCTAATTCTACCTCAAGGTGAATATTACTGTATAGCACATATATAATGTTCAATCGCTTCATTTTTTTTACTGTATAATACAATTGTTTTGTCACTCGTCAATTGATGCTAGTATTTCACTAGGTTGAACAAATTTAAGGTATATTTTTTCTTTCATGAGATTTTACATTCAGGCTTATAGCTCATGGCTAATATTTTCTTATCCAATATTCCTTTTTTCTAAGCTGCTTTCAGTTTTATTCATGTTGACTTCGATATGACATCGGTAGAATGTATTTAATCTGGCGATGAACATTTTGCACTCCCTTCATGTATTTTTTGTGCTTTATAACAGAGACCTTTGTTAGTAATAACTTCCCCTTTGCTTACTCCCTTATCCCATCCCTTCTTTCAGTTGAATGTTTGCAAAGTCCGAACTCACCGTGTTAAGCATAATTAACTCCTGCTGAGTCGAGAATTGTAAGATCAGTCAAGCAGGCTAGTCAAGTAGTCCTGTAAAAGCCTTAAAGAAAAAAGTGTAGTGGATTTGGCACAAATAATAGCAAATGGAAATGGCAACCCTCAAGTAGTTTTGATAATGTAATTAACTAGTACAAATGTTGTCAAATAGTGGCGATGGCGCGCCATGGCTGATTGTGGTGACAGATTTTTCACCAACGCCTATGACCAAATTTTGAAGGATGGCAGCACCCCGGCATTTTATTGAGGATTTTGGCTTTCTGCCACGGTCCTCTATCAATAACCCTGACTTGTATAATGTCATCACATGGAACTGAAATATTATACGCGAGATATTGACTTGATGAATACCTACAGAATTTTATTCATCGCCATTATGTGGCAGTTAGTTAGCTTTGGTTTTCTTATTCCTATCAGAGATTGAAGTTAGGTGAATGACTATGCTTGTGAGATACAATTTTAAATTCACAATTTTTTTGATGTCTACTTTAGCAGCATGGCTAAAATTGAGCTGCCATATTTTGCAACCGAGATTACAACTCCATCAAGCCCCTTTGCTTTGTCTCTAGCAAGGTATTTGCATTCAATAGGAGCTAAAATGTATGGAGCTTTCTGGTGTTCACACTGTCTGGAACAAAAAGAGGTATGTGATTACTTACAATTCATTTTGAAAAGTTTAGCCTTACTAAGTGCCTGTTTGTTAACACGGTGGGATACCCACCAAACCGAGTTTTGACCAACTCTACAATTTCAAGCTTCTTAAAATCACGGTGGGATGTGCATTGGGAATCGTTTTTCAACACAAAAAAGCTAAACCAAACACATGCTAAGTGGAACAATAATCATCATGATCTATGACTACGTCTTTTATTTGTTTTTGATAGAATTACCATAACTTTAGTTTGTGTTATATCAAAGTAGTTATCAAAATCAAACTTCAGGAATGTATCTTTCAAAAAAGGACTCACTCTCTCATGGCTACTCCTTGTGAGGATATTGCCTTGGTTTCAATTGGATTCGTATATTTGGCTGTTTACTTCTTCAAACAAACTTTTCTTGTTCTGCTCAGTCATCTAATTCCTCTGCTATAGCCTATAGGCATATCACAGTAGAGTAACTTCATTTTATTTTTTCAACCTATTTTTCTATTCTTGGTAATCTTGTCTAACATGTCTTCGAGTACAATTATTCACTTTAACTTCTCGATACAGATGTTTGGACGTGAGGCGGCGAAGCAATTGGATTACGTGGAATGTTTTCCTGACGGATATCGAACAGGAACTAAAATGATCGATGCATGCTTAGACGCTAAAATTGAAGGTTTCCCCACATGGATTATTAATGGCCAGGTAAAGAATGTCTTATGTTGTTAA

Protein sequence

>MS.gene67596.t1

MATFTVTTLSPSSSRFFAPVRLNRSPNQPRPNPLYKNCHLQRFPPLKCSSSSSEPETSSTDWTYKLISGIAGIGFIETSYLAYLKFTGSDVFCPVGGGTCSNILNSDYAVVFGVPLPLIGMAAYSFVAALSLQLATKKNLPFGVNRSNAQLVLLGSTTSMATASAYFLYILTTAFPESSCSYCLLSVLLSFSLFILTLKDIGLQEKYKQLGLQLFIASLVILTLNTSYSSANSTSSSMAKIELPYFATEITTPSSPFALSLARYLHSIGAKMYGAFWCSHCLEQKEMFGREAAKQLDYVECFPDGYRTGTKMIDACLDAKIEGFPTWIINGQVKNVLCC