Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68725.t1 | XP_003604084.1 | 95.9 | 314 | 12 | 1 | 1 | 313 | 1 | 314 | 2.00E-176 | 628.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68725.t1 | G7J991 | 95.9 | 314 | 12 | 1 | 1 | 313 | 1 | 314 | 1.4e-176 | 628.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049182 | MS.gene68725 | -0.824454 | 8.00E-54 | -1.69E-46 |
| MS.gene050876 | MS.gene68725 | 0.812728 | 3.66E-51 | -1.69E-46 |
| MS.gene051959 | MS.gene68725 | -0.827468 | 1.54E-54 | -1.69E-46 |
| MS.gene051960 | MS.gene68725 | -0.834412 | 3.04E-56 | -1.69E-46 |
| MS.gene055134 | MS.gene68725 | -0.813864 | 2.06E-51 | -1.69E-46 |
| MS.gene055634 | MS.gene68725 | 0.804555 | 2.04E-49 | -1.69E-46 |
| MS.gene055776 | MS.gene68725 | 0.838085 | 3.55E-57 | -1.69E-46 |
| MS.gene055849 | MS.gene68725 | 0.845535 | 3.82E-59 | -1.69E-46 |
| MS.gene057001 | MS.gene68725 | -0.809864 | 1.53E-50 | -1.69E-46 |
| MS.gene057148 | MS.gene68725 | 0.815512 | 8.90E-52 | -1.69E-46 |
| MS.gene057684 | MS.gene68725 | 0.830718 | 2.51E-55 | -1.69E-46 |
| MS.gene05985 | MS.gene68725 | 0.827286 | 1.70E-54 | -1.69E-46 |
| MS.gene059901 | MS.gene68725 | 0.801743 | 7.80E-49 | -1.69E-46 |
| MS.gene060512 | MS.gene68725 | -0.829744 | 4.34E-55 | -1.69E-46 |
| MS.gene061160 | MS.gene68725 | -0.800232 | 1.59E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68725.t1 | MTR_3g118320 | 97.452 | 314 | 7 | 1 | 1 | 313 | 1 | 314 | 0.0 | 626 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68725.t1 | AT5G17670 | 68.070 | 285 | 84 | 4 | 30 | 313 | 31 | 309 | 8.67e-137 | 390 |
Find 114 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTGTATATGCAGCAATTT+GGG | 0.178912 | 3.2:-93213910 | MS.gene68725:CDS |
| CGTCTGTATATGCAGCAATT+TGG | 0.240390 | 3.2:-93213911 | MS.gene68725:CDS |
| AAGAGTGCCACGCCAGTAAT+TGG | 0.244199 | 3.2:+93214060 | None:intergenic |
| CATTCACCTGCTTGTATCCT+TGG | 0.277029 | 3.2:+93213404 | None:intergenic |
| ATAACACCAGGGACGCCTTT+TGG | 0.317246 | 3.2:+93213836 | None:intergenic |
| TCAGAGTTGCCTCCAGCTTC+TGG | 0.320028 | 3.2:+93214164 | None:intergenic |
| TTGGATTTGAGTTTCCAAAA+AGG | 0.331624 | 3.2:+93213542 | None:intergenic |
| TATTTATTGAACCAGGGGTT+AGG | 0.339291 | 3.2:-93214205 | MS.gene68725:intron |
| ACATTGCGTGCTCGCTTTGT+TGG | 0.348023 | 3.2:-93213427 | MS.gene68725:CDS |
| AGTGAGCATTTGGATGGAAT+TGG | 0.358570 | 3.2:+93214350 | None:intergenic |
| CGATCAAACCAGCGGCATTT+CGG | 0.365710 | 3.2:+93214086 | None:intergenic |
| AGAAGAAGACAGTGAGCATT+TGG | 0.366919 | 3.2:+93214340 | None:intergenic |
| GGAAGTGCAGGCTCAGCATT+TGG | 0.368790 | 3.2:+93213523 | None:intergenic |
| ATATCATTGTTATTAACTCT+TGG | 0.371502 | 3.2:-93213878 | MS.gene68725:CDS |
| GTTTGATCGATCCCAATTAC+TGG | 0.372683 | 3.2:-93214072 | MS.gene68725:CDS |
| AGTTAATAACAATGATATAT+TGG | 0.374538 | 3.2:+93213883 | None:intergenic |
| TTTGTGGGCAAGCAGATGTA+TGG | 0.392192 | 3.2:-93213263 | MS.gene68725:CDS |
| AACCAACGCCTGTCCTTGAT+TGG | 0.395983 | 3.2:-93214036 | MS.gene68725:CDS |
| ATCCATTGTTCCAACACATC+AGG | 0.397261 | 3.2:+93213120 | None:intergenic |
| TAATAATTTCTCAGGTTTGT+GGG | 0.400581 | 3.2:-93213278 | MS.gene68725:intron |
| CAGTCTCCTCGGGAAGTAGC+TGG | 0.414848 | 3.2:+93213488 | None:intergenic |
| TGTTAACTTGTGGAGCAAAA+TGG | 0.418912 | 3.2:-93214385 | MS.gene68725:CDS |
| TTGAGGTGAGGGGTGTAAAC+AGG | 0.422172 | 3.2:+93213764 | None:intergenic |
| ATGACATCATCTGAACCAAC+TGG | 0.422937 | 3.2:+93213162 | None:intergenic |
| TCAAGATGAGCTGATACTTC+TGG | 0.423594 | 3.2:+93213225 | None:intergenic |
| ATAATAATTTCTCAGGTTTG+TGG | 0.429279 | 3.2:-93213279 | MS.gene68725:intron |
| ATTTATTGAACCAGGGGTTA+GGG | 0.434184 | 3.2:-93214204 | MS.gene68725:intron |
| CGGTGCACTTAACATTTCCC+TGG | 0.441926 | 3.2:-93213202 | MS.gene68725:CDS |
| GAAGTATCAGCTCATCTTGA+CGG | 0.443659 | 3.2:-93213222 | MS.gene68725:CDS |
| CAGGGGTTAGGGAACAATTC+CGG | 0.447536 | 3.2:-93214193 | MS.gene68725:CDS |
| CTCAAGTATGTATGCATAGC+AGG | 0.460049 | 3.2:-93213746 | MS.gene68725:CDS |
| CCACCTCCAAAAGGCGTCCC+TGG | 0.469313 | 3.2:-93213842 | MS.gene68725:CDS |
| GCGGCATTTCGGAGCCAATC+AGG | 0.471608 | 3.2:+93214097 | None:intergenic |
| ACAAAATGAAGGTATATTCA+AGG | 0.471722 | 3.2:-93213571 | MS.gene68725:intron |
| CTCTCTTCAAATACCAATCA+AGG | 0.471850 | 3.2:+93214023 | None:intergenic |
| CGTGCTCGCTTTGTTGGCCA+AGG | 0.474939 | 3.2:-93213421 | MS.gene68725:CDS |
| AGAGTGCCACGCCAGTAATT+GGG | 0.476971 | 3.2:+93214061 | None:intergenic |
| GCGAGCACGCAATGTTATGT+TGG | 0.482684 | 3.2:+93213435 | None:intergenic |
| CGAGCACGCAATGTTATGTT+GGG | 0.490570 | 3.2:+93213436 | None:intergenic |
| GAGACCACTCTATCATTGAT+TGG | 0.491581 | 3.2:-93213959 | MS.gene68725:CDS |
| CATCTTCAAGCTAATTAAAG+AGG | 0.492324 | 3.2:+93213091 | None:intergenic |
| TCATTGATTGGTCACTCGGC+TGG | 0.494886 | 3.2:-93213947 | MS.gene68725:CDS |
| GATTGGCTCCGAAATGCCGC+TGG | 0.497694 | 3.2:-93214094 | MS.gene68725:CDS |
| GGGAGTGGTAAACTCCATCC+AGG | 0.504586 | 3.2:+93213184 | None:intergenic |
| GAAGTATCTGTAGGAAGTGC+AGG | 0.505483 | 3.2:+93213511 | None:intergenic |
| CTCAGGAGGTGCTAACTCCA+TGG | 0.507697 | 3.2:+93213979 | None:intergenic |
| TTGATAATAGCAGTCTCCTC+GGG | 0.515621 | 3.2:+93213478 | None:intergenic |
| GCACTTAACATTTCCCTGGA+TGG | 0.518025 | 3.2:-93213198 | MS.gene68725:CDS |
| TTGGTCACTCGGCTGGAGGA+TGG | 0.518671 | 3.2:-93213940 | MS.gene68725:CDS |
| CTGGTGTTATCGATCAAACC+AGG | 0.522198 | 3.2:-93213823 | MS.gene68725:CDS |
| AATATTGTTGAACATAATCA+AGG | 0.524897 | 3.2:+93213795 | None:intergenic |
| CCAATCAGGTCTTGACACCT+TGG | 0.525622 | 3.2:+93214111 | None:intergenic |
| CAAAATGAAGGTATATTCAA+GGG | 0.525750 | 3.2:-93213570 | MS.gene68725:intron |
| ATCAATGATAGAGTGGTCTC+AGG | 0.527336 | 3.2:+93213962 | None:intergenic |
| CCCCTGATGTGTTGGAACAA+TGG | 0.527934 | 3.2:-93213122 | MS.gene68725:CDS |
| TTGTGGGCAAGCAGATGTAT+GGG | 0.530004 | 3.2:-93213262 | MS.gene68725:CDS |
| TCTATCATTGATTGGTCACT+CGG | 0.533151 | 3.2:-93213951 | MS.gene68725:CDS |
| TTCAAATACCAATCAAGGAC+AGG | 0.534115 | 3.2:+93214028 | None:intergenic |
| CCTCATCATCCACCTCCAAA+AGG | 0.539353 | 3.2:-93213851 | MS.gene68725:CDS |
| TCCATTGTTCCAACACATCA+GGG | 0.540776 | 3.2:+93213121 | None:intergenic |
| TTCCGGTGACTACCAGAAGC+TGG | 0.544893 | 3.2:-93214176 | MS.gene68725:CDS |
| TGCATACATACTTGAGGTGA+GGG | 0.545124 | 3.2:+93213753 | None:intergenic |
| GTATGGTTCCCCTGATGTGT+TGG | 0.547140 | 3.2:-93213130 | MS.gene68725:CDS |
| CAAGCAGATGTATGGGGCGA+TGG | 0.548229 | 3.2:-93213255 | MS.gene68725:CDS |
| TTTGATAATAGCAGTCTCCT+CGG | 0.548689 | 3.2:+93213477 | None:intergenic |
| CTGGTTTGATCGATAACACC+AGG | 0.550685 | 3.2:+93213824 | None:intergenic |
| CTCCAGCTTCTGGTAGTCAC+CGG | 0.551919 | 3.2:+93214174 | None:intergenic |
| CCAAGGTGTCAAGACCTGAT+TGG | 0.553014 | 3.2:-93214111 | MS.gene68725:CDS |
| GAAGACAGTGAGCATTTGGA+TGG | 0.553333 | 3.2:+93214344 | None:intergenic |
| GACGGCGGGTCGATAGTTGT+TGG | 0.564129 | 3.2:+93214304 | None:intergenic |
| GAGACTAACCGGGAGAATGA+CGG | 0.567802 | 3.2:+93214286 | None:intergenic |
| TCGACCCGCCGTCATTCTCC+CGG | 0.569276 | 3.2:-93214294 | MS.gene68725:intron |
| AGTCTCCTCGGGAAGTAGCT+GGG | 0.569738 | 3.2:+93213489 | None:intergenic |
| AACATAATCAAGGAGACCCC+TGG | 0.569925 | 3.2:+93213805 | None:intergenic |
| ATCGATCCCAATTACTGGCG+TGG | 0.571483 | 3.2:-93214067 | MS.gene68725:CDS |
| GGAGTTTACCACTCCCCAGT+TGG | 0.572002 | 3.2:-93213177 | MS.gene68725:CDS |
| AGTTGATGATGCTGTTCAAG+AGG | 0.575707 | 3.2:-93214002 | MS.gene68725:CDS |
| CGTGTCCACAGTTGTTGCCA+AGG | 0.576292 | 3.2:-93214128 | MS.gene68725:CDS |
| GGCGGGTCGATAGTTGTTGG+TGG | 0.583420 | 3.2:+93214307 | None:intergenic |
| TGTTATGTTGGGTGAAGAAG+TGG | 0.592239 | 3.2:+93213447 | None:intergenic |
| TGATGCTGTTCAAGAGGCCA+TGG | 0.593740 | 3.2:-93213996 | MS.gene68725:CDS |
| TGACATCATCTGAACCAACT+GGG | 0.595553 | 3.2:+93213163 | None:intergenic |
| TGTTGGCCAAGGATACAAGC+AGG | 0.599233 | 3.2:-93213410 | MS.gene68725:intron |
| CATCTGAACCAACTGGGGAG+TGG | 0.600466 | 3.2:+93213169 | None:intergenic |
| GATGTCATTAGACCATGGTA+TGG | 0.601444 | 3.2:-93213147 | MS.gene68725:CDS |
| TACCAATCAAGGACAGGCGT+TGG | 0.602600 | 3.2:+93214034 | None:intergenic |
| CGAGCAGTGATGTTAACTTG+TGG | 0.605981 | 3.2:-93214395 | None:intergenic |
| TTGATTGGTCACTCGGCTGG+AGG | 0.606373 | 3.2:-93213944 | MS.gene68725:CDS |
| TGACACCTTGGCAACAACTG+TGG | 0.611400 | 3.2:+93214123 | None:intergenic |
| CTGCTATGCATACATACTTG+AGG | 0.615240 | 3.2:+93213747 | None:intergenic |
| ATGCATACATACTTGAGGTG+AGG | 0.617128 | 3.2:+93213752 | None:intergenic |
| AAAATGAAGGTATATTCAAG+GGG | 0.625084 | 3.2:-93213569 | MS.gene68725:intron |
| TACTTCCCAGCTACTTCCCG+AGG | 0.636324 | 3.2:-93213494 | MS.gene68725:CDS |
| AGTAGCTGGGAAGTATCTGT+AGG | 0.636586 | 3.2:+93213502 | None:intergenic |
| GCAACTCTGAACAATAACTA+CGG | 0.639683 | 3.2:-93214151 | MS.gene68725:CDS |
| GTGACCAATCAATGATAGAG+TGG | 0.646895 | 3.2:+93213955 | None:intergenic |
| AATGATAGAGTGGTCTCAGG+AGG | 0.654021 | 3.2:+93213965 | None:intergenic |
| TGTGGGCAAGCAGATGTATG+GGG | 0.663496 | 3.2:-93213261 | MS.gene68725:CDS |
| AGTATGTATGCATAGCAGGA+AGG | 0.664109 | 3.2:-93213742 | MS.gene68725:intron |
| TGGTGTTATCGATCAAACCA+GGG | 0.665729 | 3.2:-93213822 | MS.gene68725:CDS |
| GACATCATCTGAACCAACTG+GGG | 0.666067 | 3.2:+93213164 | None:intergenic |
| CAGATGATGTCATTAGACCA+TGG | 0.669037 | 3.2:-93213152 | MS.gene68725:CDS |
| TCTGTATATGCAGCAATTTG+GGG | 0.680712 | 3.2:-93213909 | MS.gene68725:CDS |
| GCATTTGGATGGAATTGGAG+AGG | 0.682203 | 3.2:+93214355 | None:intergenic |
| GGAGTGGTAAACTCCATCCA+GGG | 0.692835 | 3.2:+93213185 | None:intergenic |
| CCATTGTTCCAACACATCAG+GGG | 0.693490 | 3.2:+93213122 | None:intergenic |
| GCATACATACTTGAGGTGAG+GGG | 0.697105 | 3.2:+93213754 | None:intergenic |
| CTAACCGGGAGAATGACGGC+GGG | 0.709087 | 3.2:+93214290 | None:intergenic |
| GGTGTTATCGATCAAACCAG+GGG | 0.713378 | 3.2:-93213821 | MS.gene68725:CDS |
| CGGTGACTACCAGAAGCTGG+AGG | 0.713933 | 3.2:-93214173 | MS.gene68725:CDS |
| ACATCAGGGGAACCATACCA+TGG | 0.720174 | 3.2:+93213135 | None:intergenic |
| ATTGGGATCGATCAAACCAG+CGG | 0.724154 | 3.2:+93214078 | None:intergenic |
| ACTAACCGGGAGAATGACGG+CGG | 0.725962 | 3.2:+93214289 | None:intergenic |
| TGGTTTGATCGATAACACCA+GGG | 0.758878 | 3.2:+93213825 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAATTATTATTAGAACTT+TGG | + | chr3.2:93214200-93214219 | None:intergenic | 15.0% |
| !! | AGTTAATAACAATGATATAT+TGG | + | chr3.2:93213607-93213626 | None:intergenic | 15.0% |
| !! | AATATTGTTGAACATAATCA+AGG | + | chr3.2:93213695-93213714 | None:intergenic | 20.0% |
| !! | TTAATTTATAGCCAAAACTA+TGG | - | chr3.2:93214125-93214144 | MS.gene68725:CDS | 20.0% |
| !!! | AGTTCTAATAATAATTTCTC+AGG | - | chr3.2:93214201-93214220 | MS.gene68725:intron | 20.0% |
| !!! | ATATCATTGTTATTAACTCT+TGG | - | chr3.2:93213609-93213628 | MS.gene68725:intron | 20.0% |
| !!! | GTTTTTTATTTATTGAACCA+GGG | - | chr3.2:93213276-93213295 | MS.gene68725:intron | 20.0% |
| !!! | TAGTTTTGGCTATAAATTAA+CGG | + | chr3.2:93214125-93214144 | None:intergenic | 20.0% |
| !!! | TTTTTTATTTATTGAACCAG+GGG | - | chr3.2:93213277-93213296 | MS.gene68725:intron | 20.0% |
| ! | ATAATAATTTCTCAGGTTTG+TGG | - | chr3.2:93214208-93214227 | MS.gene68725:intron | 25.0% |
| ! | ATCGTATAGTAAGTTATGTT+TGG | + | chr3.2:93213872-93213891 | None:intergenic | 25.0% |
| ! | CATTTCTTACTACAAAATGA+AGG | - | chr3.2:93213905-93213924 | MS.gene68725:CDS | 25.0% |
| ! | TAATAATTTCTCAGGTTTGT+GGG | - | chr3.2:93214209-93214228 | MS.gene68725:intron | 25.0% |
| ! | TCGTATAGTAAGTTATGTTT+GGG | + | chr3.2:93213871-93213890 | None:intergenic | 25.0% |
| !! | AAAATGAAGGTATATTCAAG+GGG | - | chr3.2:93213918-93213937 | MS.gene68725:CDS | 25.0% |
| !! | ACAAAATGAAGGTATATTCA+AGG | - | chr3.2:93213916-93213935 | MS.gene68725:CDS | 25.0% |
| !! | CAAAATGAAGGTATATTCAA+GGG | - | chr3.2:93213917-93213936 | MS.gene68725:CDS | 25.0% |
| !!! | ATCAAAAAAGACTACTTTTG+AGG | + | chr3.2:93213806-93213825 | None:intergenic | 25.0% |
| !!! | GGTTTTTTATTTATTGAACC+AGG | - | chr3.2:93213275-93213294 | MS.gene68725:intron | 25.0% |
| !!! | TCAAAAAAGACTACTTTTGA+GGG | + | chr3.2:93213805-93213824 | None:intergenic | 25.0% |
| ATAGTAAGTTATGTTTGGGT+TGG | + | chr3.2:93213867-93213886 | None:intergenic | 30.0% | |
| TTATTTGCTTGTGATAGATG+CGG | - | chr3.2:93214162-93214181 | MS.gene68725:CDS | 30.0% | |
| ! | TGGATTTGAGTTTCCAAAAA+GGG | + | chr3.2:93213947-93213966 | None:intergenic | 30.0% |
| ! | TTGGATTTGAGTTTCCAAAA+AGG | + | chr3.2:93213948-93213967 | None:intergenic | 30.0% |
| AAGGAGAAATAGAGACTAAC+CGG | + | chr3.2:93213215-93213234 | None:intergenic | 35.0% | |
| ATTTATTGAACCAGGGGTTA+GGG | - | chr3.2:93213283-93213302 | MS.gene68725:intron | 35.0% | |
| CGCTGATATAGATATAGAGA+AGG | + | chr3.2:93213234-93213253 | None:intergenic | 35.0% | |
| CTCTCTTCAAATACCAATCA+AGG | + | chr3.2:93213467-93213486 | None:intergenic | 35.0% | |
| GCAACTCTGAACAATAACTA+CGG | - | chr3.2:93213336-93213355 | MS.gene68725:intron | 35.0% | |
| GTCTGTATATGCAGCAATTT+GGG | - | chr3.2:93213577-93213596 | MS.gene68725:intron | 35.0% | |
| TATTTATTGAACCAGGGGTT+AGG | - | chr3.2:93213282-93213301 | MS.gene68725:intron | 35.0% | |
| TCTGTATATGCAGCAATTTG+GGG | - | chr3.2:93213578-93213597 | MS.gene68725:intron | 35.0% | |
| TTCAAATACCAATCAAGGAC+AGG | + | chr3.2:93213462-93213481 | None:intergenic | 35.0% | |
| ! | GGATTTGAGTTTCCAAAAAG+GGG | + | chr3.2:93213946-93213965 | None:intergenic | 35.0% |
| ! | TCTATCATTGATTGGTCACT+CGG | - | chr3.2:93213536-93213555 | MS.gene68725:CDS | 35.0% |
| ! | TTTGATAATAGCAGTCTCCT+CGG | + | chr3.2:93214013-93214032 | None:intergenic | 35.0% |
| !! | TGTTAACTTGTGGAGCAAAA+TGG | - | chr3.2:93213102-93213121 | MS.gene68725:CDS | 35.0% |
| AACACACACACACTCTTTCA+AGG | - | chr3.2:93213769-93213788 | MS.gene68725:CDS | 40.0% | |
| AACCAAATGAATGCGATGTG+AGG | + | chr3.2:93213259-93213278 | None:intergenic | 40.0% | |
| AGAAGAAGACAGTGAGCATT+TGG | + | chr3.2:93213150-93213169 | None:intergenic | 40.0% | |
| AGGAGAAATAGAGACTAACC+GGG | + | chr3.2:93213214-93213233 | None:intergenic | 40.0% | |
| AGTATGTATGCATAGCAGGA+AGG | - | chr3.2:93213745-93213764 | MS.gene68725:CDS | 40.0% | |
| AGTGAGCATTTGGATGGAAT+TGG | + | chr3.2:93213140-93213159 | None:intergenic | 40.0% | |
| ATCAATGATAGAGTGGTCTC+AGG | + | chr3.2:93213528-93213547 | None:intergenic | 40.0% | |
| ATCCATTGTTCCAACACATC+AGG | + | chr3.2:93214370-93214389 | None:intergenic | 40.0% | |
| ATGACATCATCTGAACCAAC+TGG | + | chr3.2:93214328-93214347 | None:intergenic | 40.0% | |
| ATGCATACATACTTGAGGTG+AGG | + | chr3.2:93213738-93213757 | None:intergenic | 40.0% | |
| CAGATGATGTCATTAGACCA+TGG | - | chr3.2:93214335-93214354 | MS.gene68725:CDS | 40.0% | |
| CGTCTGTATATGCAGCAATT+TGG | - | chr3.2:93213576-93213595 | MS.gene68725:intron | 40.0% | |
| CTCAAGTATGTATGCATAGC+AGG | - | chr3.2:93213741-93213760 | MS.gene68725:intron | 40.0% | |
| CTGCTATGCATACATACTTG+AGG | + | chr3.2:93213743-93213762 | None:intergenic | 40.0% | |
| GAGACCACTCTATCATTGAT+TGG | - | chr3.2:93213528-93213547 | MS.gene68725:CDS | 40.0% | |
| GATGTCATTAGACCATGGTA+TGG | - | chr3.2:93214340-93214359 | MS.gene68725:CDS | 40.0% | |
| GTGACCAATCAATGATAGAG+TGG | + | chr3.2:93213535-93213554 | None:intergenic | 40.0% | |
| GTTTGATCGATCCCAATTAC+TGG | - | chr3.2:93213415-93213434 | MS.gene68725:CDS | 40.0% | |
| TCAAGATGAGCTGATACTTC+TGG | + | chr3.2:93214265-93214284 | None:intergenic | 40.0% | |
| TCCATTGTTCCAACACATCA+GGG | + | chr3.2:93214369-93214388 | None:intergenic | 40.0% | |
| TGACATCATCTGAACCAACT+GGG | + | chr3.2:93214327-93214346 | None:intergenic | 40.0% | |
| TGCATACATACTTGAGGTGA+GGG | + | chr3.2:93213737-93213756 | None:intergenic | 40.0% | |
| TGGTTTGATCGATAACACCA+GGG | + | chr3.2:93213665-93213684 | None:intergenic | 40.0% | |
| TGTTATGTTGGGTGAAGAAG+TGG | + | chr3.2:93214043-93214062 | None:intergenic | 40.0% | |
| ! | CAGTTTGCACACCATAGTTT+TGG | + | chr3.2:93214139-93214158 | None:intergenic | 40.0% |
| ! | GAAGTATCAGCTCATCTTGA+CGG | - | chr3.2:93214265-93214284 | MS.gene68725:intron | 40.0% |
| ! | TTGATAATAGCAGTCTCCTC+GGG | + | chr3.2:93214012-93214031 | None:intergenic | 40.0% |
| !! | AAGTTATGTTTGGGTTGGCA+TGG | + | chr3.2:93213862-93213881 | None:intergenic | 40.0% |
| !! | AGTTGATGATGCTGTTCAAG+AGG | - | chr3.2:93213485-93213504 | MS.gene68725:CDS | 40.0% |
| !! | TGGTGTTATCGATCAAACCA+GGG | - | chr3.2:93213665-93213684 | MS.gene68725:intron | 40.0% |
| AACATAATCAAGGAGACCCC+TGG | + | chr3.2:93213685-93213704 | None:intergenic | 45.0% | |
| AATGATAGAGTGGTCTCAGG+AGG | + | chr3.2:93213525-93213544 | None:intergenic | 45.0% | |
| ATTGGGATCGATCAAACCAG+CGG | + | chr3.2:93213412-93213431 | None:intergenic | 45.0% | |
| CATTCACCTGCTTGTATCCT+TGG | + | chr3.2:93214086-93214105 | None:intergenic | 45.0% | |
| CCATTGTTCCAACACATCAG+GGG | + | chr3.2:93214368-93214387 | None:intergenic | 45.0% | |
| CGAGCACGCAATGTTATGTT+GGG | + | chr3.2:93214054-93214073 | None:intergenic | 45.0% | |
| CTCCTCACATCGCATTCATT+TGG | - | chr3.2:93213254-93213273 | MS.gene68725:CDS | 45.0% | |
| GAAGACAGTGAGCATTTGGA+TGG | + | chr3.2:93213146-93213165 | None:intergenic | 45.0% | |
| GACATCATCTGAACCAACTG+GGG | + | chr3.2:93214326-93214345 | None:intergenic | 45.0% | |
| GCACTTAACATTTCCCTGGA+TGG | - | chr3.2:93214289-93214308 | MS.gene68725:intron | 45.0% | |
| GCATACATACTTGAGGTGAG+GGG | + | chr3.2:93213736-93213755 | None:intergenic | 45.0% | |
| GCATTTGGATGGAATTGGAG+AGG | + | chr3.2:93213135-93213154 | None:intergenic | 45.0% | |
| TTGTGGGCAAGCAGATGTAT+GGG | - | chr3.2:93214225-93214244 | MS.gene68725:intron | 45.0% | |
| TTTGTGGGCAAGCAGATGTA+TGG | - | chr3.2:93214224-93214243 | MS.gene68725:intron | 45.0% | |
| ! | CTGGTTTGATCGATAACACC+AGG | + | chr3.2:93213666-93213685 | None:intergenic | 45.0% |
| ! | GAAGTATCTGTAGGAAGTGC+AGG | + | chr3.2:93213979-93213998 | None:intergenic | 45.0% |
| ! | GGTGTTATCGATCAAACCAG+GGG | - | chr3.2:93213666-93213685 | MS.gene68725:intron | 45.0% |
| !! | AGTAGCTGGGAAGTATCTGT+AGG | + | chr3.2:93213988-93214007 | None:intergenic | 45.0% |
| !! | CTGGTGTTATCGATCAAACC+AGG | - | chr3.2:93213664-93213683 | MS.gene68725:intron | 45.0% |
| !! | CTTTTGGAGGTGGATGATGA+GGG | + | chr3.2:93213638-93213657 | None:intergenic | 45.0% |
| !! | TTTTGGAGGTGGATGATGAG+GGG | + | chr3.2:93213637-93213656 | None:intergenic | 45.0% |
| AACCAACGCCTGTCCTTGAT+TGG | - | chr3.2:93213451-93213470 | MS.gene68725:CDS | 50.0% | |
| ACATCAGGGGAACCATACCA+TGG | + | chr3.2:93214355-93214374 | None:intergenic | 50.0% | |
| ACATTGCGTGCTCGCTTTGT+TGG | - | chr3.2:93214060-93214079 | MS.gene68725:CDS | 50.0% | |
| ATCGATCCCAATTACTGGCG+TGG | - | chr3.2:93213420-93213439 | MS.gene68725:CDS | 50.0% | |
| CAGGGGTTAGGGAACAATTC+CGG | - | chr3.2:93213294-93213313 | MS.gene68725:intron | 50.0% | |
| CCAATCAGGTCTTGACACCT+TGG | + | chr3.2:93213379-93213398 | None:intergenic | 50.0% | |
| CCCCTGATGTGTTGGAACAA+TGG | - | chr3.2:93214365-93214384 | MS.gene68725:CDS | 50.0% | |
| CCTCATCATCCACCTCCAAA+AGG | - | chr3.2:93213636-93213655 | MS.gene68725:intron | 50.0% | |
| CGATCAAACCAGCGGCATTT+CGG | + | chr3.2:93213404-93213423 | None:intergenic | 50.0% | |
| CGGTGCACTTAACATTTCCC+TGG | - | chr3.2:93214285-93214304 | MS.gene68725:intron | 50.0% | |
| GAGACTAACCGGGAGAATGA+CGG | + | chr3.2:93213204-93213223 | None:intergenic | 50.0% | |
| GCGAGCACGCAATGTTATGT+TGG | + | chr3.2:93214055-93214074 | None:intergenic | 50.0% | |
| GGAGTGGTAAACTCCATCCA+GGG | + | chr3.2:93214305-93214324 | None:intergenic | 50.0% | |
| GTATGGTTCCCCTGATGTGT+TGG | - | chr3.2:93214357-93214376 | MS.gene68725:CDS | 50.0% | |
| TACCAATCAAGGACAGGCGT+TGG | + | chr3.2:93213456-93213475 | None:intergenic | 50.0% | |
| TGACACCTTGGCAACAACTG+TGG | + | chr3.2:93213367-93213386 | None:intergenic | 50.0% | |
| TGATGCTGTTCAAGAGGCCA+TGG | - | chr3.2:93213491-93213510 | MS.gene68725:CDS | 50.0% | |
| TGTGGGCAAGCAGATGTATG+GGG | - | chr3.2:93214226-93214245 | MS.gene68725:intron | 50.0% | |
| TGTTGGCCAAGGATACAAGC+AGG | - | chr3.2:93214077-93214096 | MS.gene68725:CDS | 50.0% | |
| ! | AGAGTGCCACGCCAGTAATT+GGG | + | chr3.2:93213429-93213448 | None:intergenic | 50.0% |
| ! | ATAACACCAGGGACGCCTTT+TGG | + | chr3.2:93213654-93213673 | None:intergenic | 50.0% |
| ! | ATTCAAGGGGCTCCCCTTTT+TGG | - | chr3.2:93213931-93213950 | MS.gene68725:CDS | 50.0% |
| ! | CCAAGGTGTCAAGACCTGAT+TGG | - | chr3.2:93213376-93213395 | MS.gene68725:intron | 50.0% |
| ! | TCATTGATTGGTCACTCGGC+TGG | - | chr3.2:93213540-93213559 | MS.gene68725:CDS | 50.0% |
| ! | TTGAGGTGAGGGGTGTAAAC+AGG | + | chr3.2:93213726-93213745 | None:intergenic | 50.0% |
| !! | AAGAGTGCCACGCCAGTAAT+TGG | + | chr3.2:93213430-93213449 | None:intergenic | 50.0% |
| !! | CCTTTTGGAGGTGGATGATG+AGG | + | chr3.2:93213639-93213658 | None:intergenic | 50.0% |
| ACTAACCGGGAGAATGACGG+CGG | + | chr3.2:93213201-93213220 | None:intergenic | 55.0% | |
| AGTCTCCTCGGGAAGTAGCT+GGG | + | chr3.2:93214001-93214020 | None:intergenic | 55.0% | |
| CAAGCAGATGTATGGGGCGA+TGG | - | chr3.2:93214232-93214251 | MS.gene68725:intron | 55.0% | |
| CATCTGAACCAACTGGGGAG+TGG | + | chr3.2:93214321-93214340 | None:intergenic | 55.0% | |
| CGGAATTGTTCCCTAACCCC+TGG | + | chr3.2:93213296-93213315 | None:intergenic | 55.0% | |
| CGTGTCCACAGTTGTTGCCA+AGG | - | chr3.2:93213359-93213378 | MS.gene68725:intron | 55.0% | |
| CTCCAGCTTCTGGTAGTCAC+CGG | + | chr3.2:93213316-93213335 | None:intergenic | 55.0% | |
| GGAGTTTACCACTCCCCAGT+TGG | - | chr3.2:93214310-93214329 | MS.gene68725:CDS | 55.0% | |
| GGGAGTGGTAAACTCCATCC+AGG | + | chr3.2:93214306-93214325 | None:intergenic | 55.0% | |
| TACTTCCCAGCTACTTCCCG+AGG | - | chr3.2:93213993-93214012 | MS.gene68725:CDS | 55.0% | |
| TCAGAGTTGCCTCCAGCTTC+TGG | + | chr3.2:93213326-93213345 | None:intergenic | 55.0% | |
| TTCCGGTGACTACCAGAAGC+TGG | - | chr3.2:93213311-93213330 | MS.gene68725:intron | 55.0% | |
| ! | GGAAGTGCAGGCTCAGCATT+TGG | + | chr3.2:93213967-93213986 | None:intergenic | 55.0% |
| ! | TTGATTGGTCACTCGGCTGG+AGG | - | chr3.2:93213543-93213562 | MS.gene68725:CDS | 55.0% |
| !! | CTCAGGAGGTGCTAACTCCA+TGG | + | chr3.2:93213511-93213530 | None:intergenic | 55.0% |
| CAGTCTCCTCGGGAAGTAGC+TGG | + | chr3.2:93214002-93214021 | None:intergenic | 60.0% | |
| CGGTGACTACCAGAAGCTGG+AGG | - | chr3.2:93213314-93213333 | MS.gene68725:intron | 60.0% | |
| CTAACCGGGAGAATGACGGC+GGG | + | chr3.2:93213200-93213219 | None:intergenic | 60.0% | |
| GACGGCGGGTCGATAGTTGT+TGG | + | chr3.2:93213186-93213205 | None:intergenic | 60.0% | |
| GCGGCATTTCGGAGCCAATC+AGG | + | chr3.2:93213393-93213412 | None:intergenic | 60.0% | |
| GGCGGGTCGATAGTTGTTGG+TGG | + | chr3.2:93213183-93213202 | None:intergenic | 60.0% | |
| TTGGTCACTCGGCTGGAGGA+TGG | - | chr3.2:93213547-93213566 | MS.gene68725:CDS | 60.0% | |
| ! | ACACCAGGGACGCCTTTTGG+AGG | + | chr3.2:93213651-93213670 | None:intergenic | 60.0% |
| ! | CGTGCTCGCTTTGTTGGCCA+AGG | - | chr3.2:93214066-93214085 | MS.gene68725:CDS | 60.0% |
| ! | GATTGGCTCCGAAATGCCGC+TGG | - | chr3.2:93213393-93213412 | MS.gene68725:intron | 60.0% |
| TCGACCCGCCGTCATTCTCC+CGG | - | chr3.2:93213193-93213212 | MS.gene68725:CDS | 65.0% | |
| !! | CCACCTCCAAAAGGCGTCCC+TGG | - | chr3.2:93213645-93213664 | MS.gene68725:intron | 65.0% |
| !! | CCAGGGACGCCTTTTGGAGG+TGG | + | chr3.2:93213648-93213667 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 93213101 | 93214408 | 93213101 | ID=MS.gene68725 |
| chr3.2 | mRNA | 93213101 | 93214408 | 93213101 | ID=MS.gene68725.t1;Parent=MS.gene68725 |
| chr3.2 | exon | 93214295 | 93214408 | 93214295 | ID=MS.gene68725.t1.exon1;Parent=MS.gene68725.t1 |
| chr3.2 | CDS | 93214295 | 93214408 | 93214295 | ID=cds.MS.gene68725.t1;Parent=MS.gene68725.t1 |
| chr3.2 | exon | 93213743 | 93214212 | 93213743 | ID=MS.gene68725.t1.exon2;Parent=MS.gene68725.t1 |
| chr3.2 | CDS | 93213743 | 93214212 | 93213743 | ID=cds.MS.gene68725.t1;Parent=MS.gene68725.t1 |
| chr3.2 | exon | 93213411 | 93213582 | 93213411 | ID=MS.gene68725.t1.exon3;Parent=MS.gene68725.t1 |
| chr3.2 | CDS | 93213411 | 93213582 | 93213411 | ID=cds.MS.gene68725.t1;Parent=MS.gene68725.t1 |
| chr3.2 | exon | 93213101 | 93213286 | 93213101 | ID=MS.gene68725.t1.exon4;Parent=MS.gene68725.t1 |
| chr3.2 | CDS | 93213101 | 93213286 | 93213101 | ID=cds.MS.gene68725.t1;Parent=MS.gene68725.t1 |
| Gene Sequence |
| Protein sequence |
