Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69587.t1 | RHN66888.1 | 88.4 | 277 | 27 | 1 | 1 | 277 | 59 | 330 | 1.30E-73 | 286.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69587.t1 | Q9S728 | 65.2 | 115 | 36 | 1 | 166 | 276 | 191 | 305 | 1.3e-39 | 164.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69587.t1 | G7ZWV1 | 88.4 | 277 | 27 | 1 | 1 | 277 | 1 | 272 | 9.0e-74 | 286.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050020 | MS.gene69587 | 0.853749 | 1.95E-61 | -1.69E-46 |
| MS.gene050298 | MS.gene69587 | 0.849694 | 2.74E-60 | -1.69E-46 |
| MS.gene050563 | MS.gene69587 | 0.878437 | 2.81E-69 | -1.69E-46 |
| MS.gene050584 | MS.gene69587 | 0.906361 | 1.61E-80 | -1.69E-46 |
| MS.gene050585 | MS.gene69587 | 0.901979 | 1.55E-78 | -1.69E-46 |
| MS.gene050587 | MS.gene69587 | 0.940059 | 4.45E-100 | -1.69E-46 |
| MS.gene05143 | MS.gene69587 | 0.862585 | 4.57E-64 | -1.69E-46 |
| MS.gene051789 | MS.gene69587 | 0.874788 | 5.14E-68 | -1.69E-46 |
| MS.gene052142 | MS.gene69587 | 0.918781 | 1.02E-86 | -1.69E-46 |
| MS.gene052187 | MS.gene69587 | 0.811249 | 7.70E-51 | -1.69E-46 |
| MS.gene05236 | MS.gene69587 | 0.801041 | 1.09E-48 | -1.69E-46 |
| MS.gene052698 | MS.gene69587 | 0.83808 | 3.56E-57 | -1.69E-46 |
| MS.gene053074 | MS.gene69587 | 0.837885 | 3.99E-57 | -1.69E-46 |
| MS.gene053383 | MS.gene69587 | 0.917937 | 2.88E-86 | -1.69E-46 |
| MS.gene053563 | MS.gene69587 | 0.805539 | 1.27E-49 | -1.69E-46 |
| MS.gene05456 | MS.gene69587 | 0.924188 | 9.84E-90 | -1.69E-46 |
| MS.gene054596 | MS.gene69587 | 0.806581 | 7.67E-50 | -1.69E-46 |
| MS.gene055359 | MS.gene69587 | 0.886509 | 3.21E-72 | -1.69E-46 |
| MS.gene057022 | MS.gene69587 | 0.828019 | 1.13E-54 | -1.69E-46 |
| MS.gene058918 | MS.gene69587 | 0.826896 | 2.11E-54 | -1.69E-46 |
| MS.gene059006 | MS.gene69587 | 0.886277 | 3.94E-72 | -1.69E-46 |
| MS.gene059632 | MS.gene69587 | 0.832617 | 8.53E-56 | -1.69E-46 |
| MS.gene059768 | MS.gene69587 | 0.873225 | 1.73E-67 | -1.69E-46 |
| MS.gene060513 | MS.gene69587 | 0.816887 | 4.39E-52 | -1.69E-46 |
| MS.gene060691 | MS.gene69587 | 0.883859 | 3.14E-71 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69587.t1 | MTR_3g089570 | 94.964 | 278 | 7 | 3 | 1 | 277 | 1 | 272 | 0.0 | 505 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69587.t1 | AT2G42840 | 56.497 | 177 | 54 | 5 | 118 | 276 | 134 | 305 | 4.39e-56 | 182 |
Find 108 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTAGGTTGGTGGGGAAATA+TGG | 0.109920 | 3.1:+34419820 | MS.gene69587:CDS |
| CTTACACAACTGACCAAGTT+AGG | 0.249344 | 3.1:+34419993 | MS.gene69587:CDS |
| GGACTCATCCAGGAATAATA+TGG | 0.312895 | 3.1:+34419792 | MS.gene69587:CDS |
| GCAACTTACTTGCAAGTTCC+AGG | 0.317360 | 3.1:-34418959 | None:intergenic |
| AGAATTCCCCATATTATTCC+TGG | 0.352015 | 3.1:-34419800 | None:intergenic |
| CCACTTGATGGAGGGTTTGA+TGG | 0.369108 | 3.1:-34418800 | None:intergenic |
| TCAACAGTGGTGGAGATTAC+AGG | 0.372775 | 3.1:-34418396 | None:intergenic |
| GGAATAATATGGGGAATTCT+AGG | 0.377925 | 3.1:+34419803 | MS.gene69587:CDS |
| TTTGGTGTGACCAATGTTCC+AGG | 0.378071 | 3.1:+34419851 | MS.gene69587:CDS |
| CCTTCCCCATCTCCCTTCCC+TGG | 0.386576 | 3.1:+34418941 | MS.gene69587:CDS |
| TGTTGTTCACCAAGGAGTTA+AGG | 0.387945 | 3.1:-34419964 | None:intergenic |
| TCTTGTGTTGGAAAGTGCTT+GGG | 0.393890 | 3.1:-34419897 | None:intergenic |
| TTCTTGTGTTGGAAAGTGCT+TGG | 0.399528 | 3.1:-34419898 | None:intergenic |
| TGCTTCATTCCTTAACTCCT+TGG | 0.409386 | 3.1:+34419955 | MS.gene69587:CDS |
| TTGTGTTGCAGCAGCCTTGT+TGG | 0.413820 | 3.1:-34420041 | None:intergenic |
| CTAGGTTGGTGGGGAAATAT+GGG | 0.416346 | 3.1:+34419821 | MS.gene69587:CDS |
| GGTGGATCAGTTGGAGTTGA+TGG | 0.420624 | 3.1:-34418842 | None:intergenic |
| ACTCCAACACGACCTTCAAC+TGG | 0.426192 | 3.1:+34418707 | MS.gene69587:CDS |
| CTTCATTTGCCATCTTGAAA+AGG | 0.430225 | 3.1:-34420069 | None:intergenic |
| CTAACTTGGTCAGTTGTGTA+AGG | 0.430724 | 3.1:-34419992 | None:intergenic |
| GATGGGGAAGGAAGGAAAGG+TGG | 0.432710 | 3.1:-34418929 | None:intergenic |
| GGAAATATGGGAAATGCATT+TGG | 0.433355 | 3.1:+34419833 | MS.gene69587:CDS |
| AAAGGTGGTGTAGGGACAGT+AGG | 0.438620 | 3.1:-34418914 | None:intergenic |
| CAAGTTCCAGGGAAGGGAGA+TGG | 0.440600 | 3.1:-34418947 | None:intergenic |
| GGAGGGTTTGATGGTGTTGA+AGG | 0.443891 | 3.1:-34418791 | None:intergenic |
| TATGATCAATTTCATGGTCT+AGG | 0.447170 | 3.1:-34420103 | None:intergenic |
| GTAGGAGTGCCAGGATCTAT+TGG | 0.447810 | 3.1:-34418896 | None:intergenic |
| GACTCATCCAGGAATAATAT+GGG | 0.459996 | 3.1:+34419793 | MS.gene69587:CDS |
| GATGGTGTTGAAGGTGTAGA+AGG | 0.461590 | 3.1:-34418755 | None:intergenic |
| GAAGGAAGGAAAGGTGGTGT+AGG | 0.461768 | 3.1:-34418923 | None:intergenic |
| TTTGATGGTGTTGAAGGTGT+TGG | 0.464631 | 3.1:-34418785 | None:intergenic |
| ATGCAAACCTGTCCCTAACT+TGG | 0.469578 | 3.1:-34420006 | None:intergenic |
| AACATAATGCAGGCCCTCAT+AGG | 0.469593 | 3.1:+34418606 | MS.gene69587:intron |
| AACACAAGAACTGATGGTTT+AGG | 0.469650 | 3.1:+34419911 | MS.gene69587:CDS |
| TTATAGTATCCACCACTTGA+TGG | 0.470071 | 3.1:-34418812 | None:intergenic |
| AAGTTCCAGGGAAGGGAGAT+GGG | 0.476491 | 3.1:-34418946 | None:intergenic |
| GGATTATGTGATGGTGTTGA+AGG | 0.479211 | 3.1:-34418764 | None:intergenic |
| AAGGAAGGAAAGGTGGTGTA+GGG | 0.495495 | 3.1:-34418922 | None:intergenic |
| GTTGGAAAGTGCTTGGGGTA+AGG | 0.496771 | 3.1:-34419891 | None:intergenic |
| AGGAGTAAACCCTGGAACAT+TGG | 0.499050 | 3.1:-34419861 | None:intergenic |
| AATGTTCCAGGGTTTACTCC+TGG | 0.500719 | 3.1:+34419863 | MS.gene69587:CDS |
| GGAAGGGAGATGGGGAAGGA+AGG | 0.502197 | 3.1:-34418937 | None:intergenic |
| GTAGGGACAGTAGGAGTGCC+AGG | 0.503622 | 3.1:-34418905 | None:intergenic |
| CTTTCCAACACAAGAACTGA+TGG | 0.504329 | 3.1:+34419905 | MS.gene69587:CDS |
| GGAGATGGGGAAGGAAGGAA+AGG | 0.504748 | 3.1:-34418932 | None:intergenic |
| ACTGTTGAAGATCCACATTC+AGG | 0.508660 | 3.1:+34418411 | MS.gene69587:CDS |
| TGCAACAAGCACTGTGAACA+TGG | 0.512397 | 3.1:-34418349 | None:intergenic |
| TAATATGGGGAATTCTAGGT+TGG | 0.520470 | 3.1:+34419807 | MS.gene69587:CDS |
| AGGAGTACTTCTCCATCTCA+TGG | 0.522905 | 3.1:+34418626 | MS.gene69587:CDS |
| TAAACCATCAGTTCTTGTGT+TGG | 0.525884 | 3.1:-34419909 | None:intergenic |
| TTACACAACTGACCAAGTTA+GGG | 0.525939 | 3.1:+34419994 | MS.gene69587:CDS |
| AGCTACTGGAGGACTCATCC+AGG | 0.526289 | 3.1:+34419782 | MS.gene69587:intron |
| TATGGGGAATTCTAGGTTGG+TGG | 0.528656 | 3.1:+34419810 | MS.gene69587:CDS |
| CCAGGGAAGGGAGATGGGGA+AGG | 0.539492 | 3.1:-34418941 | None:intergenic |
| CCAGGATCTATTGGTGTGGA+TGG | 0.540364 | 3.1:-34418887 | None:intergenic |
| GAATATCCACATCCAGTTGA+AGG | 0.540702 | 3.1:-34418719 | None:intergenic |
| CAACTGACCAAGTTAGGGAC+AGG | 0.541089 | 3.1:+34419999 | MS.gene69587:CDS |
| ACACGACCTTCAACTGGATG+TGG | 0.541466 | 3.1:+34418713 | MS.gene69587:CDS |
| GATGGAGAAGTACTCCTATG+AGG | 0.543194 | 3.1:-34418620 | None:intergenic |
| TCTATTGGTGTGGATGGAGA+TGG | 0.543783 | 3.1:-34418881 | None:intergenic |
| GAATCAGAGAAAACTGATGA+AGG | 0.547203 | 3.1:-34418438 | None:intergenic |
| TACTTGCAAGTTCCAGGGAA+GGG | 0.548718 | 3.1:-34418953 | None:intergenic |
| AAGCACTGTGAACATGGAAA+AGG | 0.549652 | 3.1:-34418343 | None:intergenic |
| CCATCCACACCAATAGATCC+TGG | 0.553988 | 3.1:+34418887 | MS.gene69587:CDS |
| GAACATGGAAAAGGAAACAT+AGG | 0.554743 | 3.1:-34418334 | None:intergenic |
| ATTGGTGTGGATGGAGATGG+TGG | 0.558018 | 3.1:-34418878 | None:intergenic |
| TTGGTGTGACCAATGTTCCA+GGG | 0.561065 | 3.1:+34419852 | MS.gene69587:CDS |
| AAAGTGACTGGTGGATCAGT+TGG | 0.565302 | 3.1:-34418851 | None:intergenic |
| CAACTTACTTGCAAGTTCCA+GGG | 0.565925 | 3.1:-34418958 | None:intergenic |
| GGTGGTGAGCTTCCATGAGA+TGG | 0.567793 | 3.1:-34418638 | None:intergenic |
| GGATCAGTTGGAGTTGATGG+TGG | 0.570978 | 3.1:-34418839 | None:intergenic |
| CATCCAGTTGAAGGTCGTGT+TGG | 0.575186 | 3.1:-34418710 | None:intergenic |
| GATGGTGGTGTCAAAGTGAC+TGG | 0.584003 | 3.1:-34418863 | None:intergenic |
| GAAGGTGTTGGATTATGTGA+TGG | 0.585952 | 3.1:-34418773 | None:intergenic |
| GGTGATGAGCTTCCATGTGA+AGG | 0.591177 | 3.1:-34418659 | None:intergenic |
| ATGGGGAATTCTAGGTTGGT+GGG | 0.591873 | 3.1:+34419811 | MS.gene69587:CDS |
| AGTATCCACCACTTGATGGA+GGG | 0.594468 | 3.1:-34418808 | None:intergenic |
| ATGGAGAAGTACTCCTATGA+GGG | 0.600051 | 3.1:-34418619 | None:intergenic |
| TTACTTGCAAGTTCCAGGGA+AGG | 0.600468 | 3.1:-34418954 | None:intergenic |
| GCTTGGGGTAAGGTTAGACC+AGG | 0.600559 | 3.1:-34419881 | None:intergenic |
| AGTTCCAGGGAAGGGAGATG+GGG | 0.604246 | 3.1:-34418945 | None:intergenic |
| TCACCACCATCACATGGTGG+AGG | 0.604865 | 3.1:+34418677 | MS.gene69587:CDS |
| GATGAAGGATTTCCTGAATG+TGG | 0.608994 | 3.1:-34418423 | None:intergenic |
| GGAAGCTCACCACCTTCACA+TGG | 0.609355 | 3.1:+34418647 | MS.gene69587:CDS |
| CACCACCATCACATGGTGGA+GGG | 0.611558 | 3.1:+34418678 | MS.gene69587:CDS |
| TAACTTGGTCAGTTGTGTAA+GGG | 0.620778 | 3.1:-34419991 | None:intergenic |
| TAGTATCCACCACTTGATGG+AGG | 0.621034 | 3.1:-34418809 | None:intergenic |
| AGCTCATCACCACCATCACA+TGG | 0.624071 | 3.1:+34418671 | MS.gene69587:CDS |
| TTAGGAGCACTCTACAGAGA+AGG | 0.625890 | 3.1:+34419929 | MS.gene69587:CDS |
| TAAGACCCTCCACCATGTGA+TGG | 0.626381 | 3.1:-34418683 | None:intergenic |
| CCATCAAACCCTCCATCAAG+TGG | 0.632528 | 3.1:+34418800 | MS.gene69587:CDS |
| TGGGGAATTCTAGGTTGGTG+GGG | 0.637604 | 3.1:+34419812 | MS.gene69587:CDS |
| ATCATCACTTCACTCCAACA+AGG | 0.638513 | 3.1:+34420027 | MS.gene69587:CDS |
| ATGTGGATCTTCAACAGTGG+TGG | 0.651198 | 3.1:-34418406 | None:intergenic |
| GATGAGCTTCCATGTGAAGG+TGG | 0.651216 | 3.1:-34418656 | None:intergenic |
| TCAAACCCTCCATCAAGTGG+TGG | 0.659955 | 3.1:+34418803 | MS.gene69587:CDS |
| AGGGAACTTGTTGTTCACCA+AGG | 0.661827 | 3.1:-34419972 | None:intergenic |
| GTTAGACCAGGAGTAAACCC+TGG | 0.666448 | 3.1:-34419869 | None:intergenic |
| CTTGTGTTGGAAAGTGCTTG+GGG | 0.668302 | 3.1:-34419896 | None:intergenic |
| GGTGGTGTCAAAGTGACTGG+TGG | 0.668630 | 3.1:-34418860 | None:intergenic |
| GACCCTCCACCATGTGATGG+TGG | 0.670898 | 3.1:-34418680 | None:intergenic |
| ACTCATCCAGGAATAATATG+GGG | 0.672725 | 3.1:+34419794 | MS.gene69587:CDS |
| TGAATGTGGATCTTCAACAG+TGG | 0.696724 | 3.1:-34418409 | None:intergenic |
| GGTGTAGAAGGATCATGTGG+TGG | 0.697348 | 3.1:-34418743 | None:intergenic |
| AGTGCCAGGATCTATTGGTG+TGG | 0.697969 | 3.1:-34418891 | None:intergenic |
| TGGAGATTACAGGAATCACA+AGG | 0.719034 | 3.1:-34418386 | None:intergenic |
| GAAGGTGTAGAAGGATCATG+TGG | 0.725266 | 3.1:-34418746 | None:intergenic |
| TCATCACCACCATCACATGG+TGG | 0.774824 | 3.1:+34418674 | MS.gene69587:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATATTTGTTTCAAATAAA+CGG | + | chr3.1:34419062-34419081 | MS.gene69587:intron | 10.0% |
| !! | TTAAATATTAAACAATGTTA+GGG | - | chr3.1:34418541-34418560 | None:intergenic | 10.0% |
| !! | AGTTATACTAAAATTTAATG+TGG | - | chr3.1:34419117-34419136 | None:intergenic | 15.0% |
| !! | CTTAAATATTAAACAATGTT+AGG | - | chr3.1:34418542-34418561 | None:intergenic | 15.0% |
| !!! | AAATTTTGAATACTAAAGTT+AGG | - | chr3.1:34418479-34418498 | None:intergenic | 15.0% |
| !!! | AATTTTGAATACTAAAGTTA+GGG | - | chr3.1:34418478-34418497 | None:intergenic | 15.0% |
| !!! | TTAAATTTTAGTATAACTAG+TGG | + | chr3.1:34419119-34419138 | MS.gene69587:intron | 15.0% |
| !! | TAATACTACTTATCTTTCTA+AGG | - | chr3.1:34419365-34419384 | None:intergenic | 20.0% |
| !! | TACATGGTTAGTATAAATAT+TGG | - | chr3.1:34418504-34418523 | None:intergenic | 20.0% |
| !! | TGAAACAAATATTATGAAGT+AGG | - | chr3.1:34419056-34419075 | None:intergenic | 20.0% |
| !!! | ATAGATTAGTAGTTTTCATA+AGG | + | chr3.1:34419696-34419715 | MS.gene69587:intron | 20.0% |
| !!! | TGTCTTTTTCTCTATAAAAA+GGG | + | chr3.1:34419152-34419171 | MS.gene69587:intron | 20.0% |
| ! | AAGAGAGAGAGTTTATATTT+AGG | + | chr3.1:34419472-34419491 | MS.gene69587:intron | 25.0% |
| !! | GTGTCTTTTTCTCTATAAAA+AGG | + | chr3.1:34419151-34419170 | MS.gene69587:intron | 25.0% |
| !!! | GTTTTGATAAGGAGTATATT+TGG | + | chr3.1:34419426-34419445 | MS.gene69587:intron | 25.0% |
| GGTTACTAGATATAACTACA+TGG | - | chr3.1:34418520-34418539 | None:intergenic | 30.0% | |
| GTTAGATGCATATACACAAA+AGG | - | chr3.1:34419327-34419346 | None:intergenic | 30.0% | |
| TAGAGAAAAAGACACATCAT+TGG | - | chr3.1:34419146-34419165 | None:intergenic | 30.0% | |
| TGTTGTGTTTAACATAATGC+AGG | + | chr3.1:34418596-34418615 | MS.gene69587:intron | 30.0% | |
| ! | TACTTATCTTTCTAAGGAGA+TGG | - | chr3.1:34419359-34419378 | None:intergenic | 30.0% |
| !! | ACAGATCAACAGTTTTGATA+AGG | + | chr3.1:34419415-34419434 | MS.gene69587:intron | 30.0% |
| !! | TTTTCAAGATGGCAAATGAA+GGG | + | chr3.1:34420071-34420090 | MS.gene69587:CDS | 30.0% |
| AACACAAGAACTGATGGTTT+AGG | + | chr3.1:34419911-34419930 | MS.gene69587:CDS | 35.0% | |
| ACTCATCCAGGAATAATATG+GGG | + | chr3.1:34419794-34419813 | MS.gene69587:CDS | 35.0% | |
| AGAATTCCCCATATTATTCC+TGG | - | chr3.1:34419803-34419822 | None:intergenic | 35.0% | |
| CTTCATTTGCCATCTTGAAA+AGG | - | chr3.1:34420072-34420091 | None:intergenic | 35.0% | |
| GAACATGGAAAAGGAAACAT+AGG | - | chr3.1:34418337-34418356 | None:intergenic | 35.0% | |
| GAATCAGAGAAAACTGATGA+AGG | - | chr3.1:34418441-34418460 | None:intergenic | 35.0% | |
| GACTCATCCAGGAATAATAT+GGG | + | chr3.1:34419793-34419812 | MS.gene69587:CDS | 35.0% | |
| GGAAATATGGGAAATGCATT+TGG | + | chr3.1:34419833-34419852 | MS.gene69587:CDS | 35.0% | |
| GGAATAATATGGGGAATTCT+AGG | + | chr3.1:34419803-34419822 | MS.gene69587:CDS | 35.0% | |
| TAAACCATCAGTTCTTGTGT+TGG | - | chr3.1:34419912-34419931 | None:intergenic | 35.0% | |
| TAACTTGGTCAGTTGTGTAA+GGG | - | chr3.1:34419994-34420013 | None:intergenic | 35.0% | |
| TAATATGGGGAATTCTAGGT+TGG | + | chr3.1:34419807-34419826 | MS.gene69587:CDS | 35.0% | |
| TTACACAACTGACCAAGTTA+GGG | + | chr3.1:34419994-34420013 | MS.gene69587:CDS | 35.0% | |
| TTATAGTATCCACCACTTGA+TGG | - | chr3.1:34418815-34418834 | None:intergenic | 35.0% | |
| ! | TTTCTGTGATTTTCAGCTAC+TGG | + | chr3.1:34419768-34419787 | MS.gene69587:intron | 35.0% |
| !! | CTTTTCAAGATGGCAAATGA+AGG | + | chr3.1:34420070-34420089 | MS.gene69587:CDS | 35.0% |
| ACTGTTGAAGATCCACATTC+AGG | + | chr3.1:34418411-34418430 | MS.gene69587:CDS | 40.0% | |
| ATCATCACTTCACTCCAACA+AGG | + | chr3.1:34420027-34420046 | MS.gene69587:CDS | 40.0% | |
| CAACTTACTTGCAAGTTCCA+GGG | - | chr3.1:34418961-34418980 | None:intergenic | 40.0% | |
| CTAACTTGGTCAGTTGTGTA+AGG | - | chr3.1:34419995-34420014 | None:intergenic | 40.0% | |
| CTTACACAACTGACCAAGTT+AGG | + | chr3.1:34419993-34420012 | MS.gene69587:CDS | 40.0% | |
| CTTTCCAACACAAGAACTGA+TGG | + | chr3.1:34419905-34419924 | MS.gene69587:CDS | 40.0% | |
| GAATATCCACATCCAGTTGA+AGG | - | chr3.1:34418722-34418741 | None:intergenic | 40.0% | |
| GATGAAGGATTTCCTGAATG+TGG | - | chr3.1:34418426-34418445 | None:intergenic | 40.0% | |
| GGACTCATCCAGGAATAATA+TGG | + | chr3.1:34419792-34419811 | MS.gene69587:CDS | 40.0% | |
| TGAATGTGGATCTTCAACAG+TGG | - | chr3.1:34418412-34418431 | None:intergenic | 40.0% | |
| TGCTTCATTCCTTAACTCCT+TGG | + | chr3.1:34419955-34419974 | MS.gene69587:CDS | 40.0% | |
| TGGAGATTACAGGAATCACA+AGG | - | chr3.1:34418389-34418408 | None:intergenic | 40.0% | |
| TGTTGTTCACCAAGGAGTTA+AGG | - | chr3.1:34419967-34419986 | None:intergenic | 40.0% | |
| ! | AAGCACTGTGAACATGGAAA+AGG | - | chr3.1:34418346-34418365 | None:intergenic | 40.0% |
| ! | GGATTATGTGATGGTGTTGA+AGG | - | chr3.1:34418767-34418786 | None:intergenic | 40.0% |
| !! | ACAAGCTCACCTTTTCAAGA+TGG | + | chr3.1:34420060-34420079 | MS.gene69587:CDS | 40.0% |
| !! | ATGGAGAAGTACTCCTATGA+GGG | - | chr3.1:34418622-34418641 | None:intergenic | 40.0% |
| !! | GAAGGTGTTGGATTATGTGA+TGG | - | chr3.1:34418776-34418795 | None:intergenic | 40.0% |
| !! | TCTTGTGTTGGAAAGTGCTT+GGG | - | chr3.1:34419900-34419919 | None:intergenic | 40.0% |
| !! | TTCTTGTGTTGGAAAGTGCT+TGG | - | chr3.1:34419901-34419920 | None:intergenic | 40.0% |
| !! | TTTGATGGTGTTGAAGGTGT+TGG | - | chr3.1:34418788-34418807 | None:intergenic | 40.0% |
| AACATAATGCAGGCCCTCAT+AGG | + | chr3.1:34418606-34418625 | MS.gene69587:intron | 45.0% | |
| AAGGAAGGAAAGGTGGTGTA+GGG | - | chr3.1:34418925-34418944 | None:intergenic | 45.0% | |
| AATGTTCCAGGGTTTACTCC+TGG | + | chr3.1:34419863-34419882 | MS.gene69587:CDS | 45.0% | |
| AGGAGTAAACCCTGGAACAT+TGG | - | chr3.1:34419864-34419883 | None:intergenic | 45.0% | |
| AGTATCCACCACTTGATGGA+GGG | - | chr3.1:34418811-34418830 | None:intergenic | 45.0% | |
| ATGCAAACCTGTCCCTAACT+TGG | - | chr3.1:34420009-34420028 | None:intergenic | 45.0% | |
| ATGTGGATCTTCAACAGTGG+TGG | - | chr3.1:34418409-34418428 | None:intergenic | 45.0% | |
| GCAACTTACTTGCAAGTTCC+AGG | - | chr3.1:34418962-34418981 | None:intergenic | 45.0% | |
| TACTTGCAAGTTCCAGGGAA+GGG | - | chr3.1:34418956-34418975 | None:intergenic | 45.0% | |
| TAGTATCCACCACTTGATGG+AGG | - | chr3.1:34418812-34418831 | None:intergenic | 45.0% | |
| TCTATTGGTGTGGATGGAGA+TGG | - | chr3.1:34418884-34418903 | None:intergenic | 45.0% | |
| TTACTTGCAAGTTCCAGGGA+AGG | - | chr3.1:34418957-34418976 | None:intergenic | 45.0% | |
| TTGGTGTGACCAATGTTCCA+GGG | + | chr3.1:34419852-34419871 | MS.gene69587:CDS | 45.0% | |
| ! | AAAGTGACTGGTGGATCAGT+TGG | - | chr3.1:34418854-34418873 | None:intergenic | 45.0% |
| ! | CTGTGATTTTCAGCTACTGG+AGG | + | chr3.1:34419771-34419790 | MS.gene69587:intron | 45.0% |
| ! | GAAGGTGTAGAAGGATCATG+TGG | - | chr3.1:34418749-34418768 | None:intergenic | 45.0% |
| ! | GATGGTGTTGAAGGTGTAGA+AGG | - | chr3.1:34418758-34418777 | None:intergenic | 45.0% |
| ! | TATGGGGAATTCTAGGTTGG+TGG | + | chr3.1:34419810-34419829 | MS.gene69587:CDS | 45.0% |
| ! | TCAACAGTGGTGGAGATTAC+AGG | - | chr3.1:34418399-34418418 | None:intergenic | 45.0% |
| ! | TGCAACAAGCACTGTGAACA+TGG | - | chr3.1:34418352-34418371 | None:intergenic | 45.0% |
| ! | TTTGGTGTGACCAATGTTCC+AGG | + | chr3.1:34419851-34419870 | MS.gene69587:CDS | 45.0% |
| !! | AGGAGTACTTCTCCATCTCA+TGG | + | chr3.1:34418626-34418645 | MS.gene69587:CDS | 45.0% |
| !! | AGGGAACTTGTTGTTCACCA+AGG | - | chr3.1:34419975-34419994 | None:intergenic | 45.0% |
| !! | ATGGGGAATTCTAGGTTGGT+GGG | + | chr3.1:34419811-34419830 | MS.gene69587:CDS | 45.0% |
| !! | CTAGGTTGGTGGGGAAATAT+GGG | + | chr3.1:34419821-34419840 | MS.gene69587:CDS | 45.0% |
| !! | CTTGTGTTGGAAAGTGCTTG+GGG | - | chr3.1:34419899-34419918 | None:intergenic | 45.0% |
| !! | GATGGAGAAGTACTCCTATG+AGG | - | chr3.1:34418623-34418642 | None:intergenic | 45.0% |
| !! | TCTAGGTTGGTGGGGAAATA+TGG | + | chr3.1:34419820-34419839 | MS.gene69587:CDS | 45.0% |
| !! | TTAGGAGCACTCTACAGAGA+AGG | + | chr3.1:34419929-34419948 | MS.gene69587:CDS | 45.0% |
| !!! | ATTATACTATTTTTTTTTAA+TGG | - | chr3.1:34419582-34419601 | None:intergenic | 5.0% |
| AAAGGTGGTGTAGGGACAGT+AGG | - | chr3.1:34418917-34418936 | None:intergenic | 50.0% | |
| AAGTTCCAGGGAAGGGAGAT+GGG | - | chr3.1:34418949-34418968 | None:intergenic | 50.0% | |
| ACACGACCTTCAACTGGATG+TGG | + | chr3.1:34418713-34418732 | MS.gene69587:CDS | 50.0% | |
| ACTCCAACACGACCTTCAAC+TGG | + | chr3.1:34418707-34418726 | MS.gene69587:CDS | 50.0% | |
| AGCTCATCACCACCATCACA+TGG | + | chr3.1:34418671-34418690 | MS.gene69587:CDS | 50.0% | |
| AGTGCCAGGATCTATTGGTG+TGG | - | chr3.1:34418894-34418913 | None:intergenic | 50.0% | |
| ATTGGTGTGGATGGAGATGG+TGG | - | chr3.1:34418881-34418900 | None:intergenic | 50.0% | |
| CAACTGACCAAGTTAGGGAC+AGG | + | chr3.1:34419999-34420018 | MS.gene69587:CDS | 50.0% | |
| CATCCAGTTGAAGGTCGTGT+TGG | - | chr3.1:34418713-34418732 | None:intergenic | 50.0% | |
| CCACTTGATGGAGGGTTTGA+TGG | - | chr3.1:34418803-34418822 | None:intergenic | 50.0% | |
| CCAGGATCTATTGGTGTGGA+TGG | - | chr3.1:34418890-34418909 | None:intergenic | 50.0% | |
| CCATCAAACCCTCCATCAAG+TGG | + | chr3.1:34418800-34418819 | MS.gene69587:CDS | 50.0% | |
| CCATCCACACCAATAGATCC+TGG | + | chr3.1:34418887-34418906 | MS.gene69587:CDS | 50.0% | |
| GAAGGAAGGAAAGGTGGTGT+AGG | - | chr3.1:34418926-34418945 | None:intergenic | 50.0% | |
| GATGAGCTTCCATGTGAAGG+TGG | - | chr3.1:34418659-34418678 | None:intergenic | 50.0% | |
| GGTGATGAGCTTCCATGTGA+AGG | - | chr3.1:34418662-34418681 | None:intergenic | 50.0% | |
| GGTGGATCAGTTGGAGTTGA+TGG | - | chr3.1:34418845-34418864 | None:intergenic | 50.0% | |
| GGTGTAGAAGGATCATGTGG+TGG | - | chr3.1:34418746-34418765 | None:intergenic | 50.0% | |
| GTTAGACCAGGAGTAAACCC+TGG | - | chr3.1:34419872-34419891 | None:intergenic | 50.0% | |
| TAAGACCCTCCACCATGTGA+TGG | - | chr3.1:34418686-34418705 | None:intergenic | 50.0% | |
| TCAAACCCTCCATCAAGTGG+TGG | + | chr3.1:34418803-34418822 | MS.gene69587:CDS | 50.0% | |
| TCATCACCACCATCACATGG+TGG | + | chr3.1:34418674-34418693 | MS.gene69587:CDS | 50.0% | |
| ! | GATGGTGGTGTCAAAGTGAC+TGG | - | chr3.1:34418866-34418885 | None:intergenic | 50.0% |
| ! | TTGTGTTGCAGCAGCCTTGT+TGG | - | chr3.1:34420044-34420063 | None:intergenic | 50.0% |
| !! | GGAGGGTTTGATGGTGTTGA+AGG | - | chr3.1:34418794-34418813 | None:intergenic | 50.0% |
| !! | GGATCAGTTGGAGTTGATGG+TGG | - | chr3.1:34418842-34418861 | None:intergenic | 50.0% |
| !! | GTAGGAGTGCCAGGATCTAT+TGG | - | chr3.1:34418899-34418918 | None:intergenic | 50.0% |
| !! | GTTGGAAAGTGCTTGGGGTA+AGG | - | chr3.1:34419894-34419913 | None:intergenic | 50.0% |
| !! | TGGGGAATTCTAGGTTGGTG+GGG | + | chr3.1:34419812-34419831 | MS.gene69587:CDS | 50.0% |
| AGCTACTGGAGGACTCATCC+AGG | + | chr3.1:34419782-34419801 | MS.gene69587:intron | 55.0% | |
| AGTTCCAGGGAAGGGAGATG+GGG | - | chr3.1:34418948-34418967 | None:intergenic | 55.0% | |
| CAAGTTCCAGGGAAGGGAGA+TGG | - | chr3.1:34418950-34418969 | None:intergenic | 55.0% | |
| GATGGGGAAGGAAGGAAAGG+TGG | - | chr3.1:34418932-34418951 | None:intergenic | 55.0% | |
| GCTTGGGGTAAGGTTAGACC+AGG | - | chr3.1:34419884-34419903 | None:intergenic | 55.0% | |
| GGAAGCTCACCACCTTCACA+TGG | + | chr3.1:34418647-34418666 | MS.gene69587:CDS | 55.0% | |
| GGAGATGGGGAAGGAAGGAA+AGG | - | chr3.1:34418935-34418954 | None:intergenic | 55.0% | |
| GGTGGTGAGCTTCCATGAGA+TGG | - | chr3.1:34418641-34418660 | None:intergenic | 55.0% | |
| TCACCACCATCACATGGTGG+AGG | + | chr3.1:34418677-34418696 | MS.gene69587:CDS | 55.0% | |
| ! | CACCACCATCACATGGTGGA+GGG | + | chr3.1:34418678-34418697 | MS.gene69587:CDS | 55.0% |
| ! | GGTGGTGTCAAAGTGACTGG+TGG | - | chr3.1:34418863-34418882 | None:intergenic | 55.0% |
| GACCCTCCACCATGTGATGG+TGG | - | chr3.1:34418683-34418702 | None:intergenic | 60.0% | |
| GGAAGGGAGATGGGGAAGGA+AGG | - | chr3.1:34418940-34418959 | None:intergenic | 60.0% | |
| !! | GTAGGGACAGTAGGAGTGCC+AGG | - | chr3.1:34418908-34418927 | None:intergenic | 60.0% |
| CCAGGGAAGGGAGATGGGGA+AGG | - | chr3.1:34418944-34418963 | None:intergenic | 65.0% | |
| CCTTCCCCATCTCCCTTCCC+TGG | + | chr3.1:34418941-34418960 | MS.gene69587:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 34418318 | 34420114 | 34418318 | ID=MS.gene69587 |
| chr3.1 | mRNA | 34418318 | 34420114 | 34418318 | ID=MS.gene69587.t1;Parent=MS.gene69587 |
| chr3.1 | exon | 34418318 | 34418465 | 34418318 | ID=MS.gene69587.t1.exon1;Parent=MS.gene69587.t1 |
| chr3.1 | CDS | 34418318 | 34418465 | 34418318 | ID=cds.MS.gene69587.t1;Parent=MS.gene69587.t1 |
| chr3.1 | exon | 34418618 | 34418972 | 34418618 | ID=MS.gene69587.t1.exon2;Parent=MS.gene69587.t1 |
| chr3.1 | CDS | 34418618 | 34418972 | 34418618 | ID=cds.MS.gene69587.t1;Parent=MS.gene69587.t1 |
| chr3.1 | exon | 34419784 | 34420114 | 34419784 | ID=MS.gene69587.t1.exon3;Parent=MS.gene69587.t1 |
| chr3.1 | CDS | 34419784 | 34420114 | 34419784 | ID=cds.MS.gene69587.t1;Parent=MS.gene69587.t1 |
| Gene Sequence |
| Protein sequence |
