Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70342.t1 | XP_003630090.2 | 100 | 111 | 0 | 0 | 1 | 111 | 1 | 111 | 5.80E-49 | 203.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70342.t1 | F4K4E3 | 98.9 | 93 | 1 | 0 | 1 | 93 | 1 | 93 | 5.3e-51 | 201.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70342.t1 | G7KRW1 | 100.0 | 111 | 0 | 0 | 1 | 111 | 1 | 111 | 4.2e-49 | 203.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene70342 | MS.gene023131 | PPI |
| MS.gene70342 | MS.gene028322 | PPI |
| MS.gene70342 | MS.gene055162 | PPI |
| MS.gene70342 | MS.gene36469 | PPI |
| MS.gene70342 | MS.gene051172 | PPI |
| MS.gene70342 | MS.gene35136 | PPI |
| MS.gene70342 | MS.gene44813 | PPI |
| MS.gene70342 | MS.gene006962 | PPI |
| MS.gene43700 | MS.gene70342 | PPI |
| MS.gene051241 | MS.gene70342 | PPI |
| MS.gene70342 | MS.gene051245 | PPI |
| MS.gene70342 | MS.gene23567 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70342.t1 | MTR_7g108700 | 100.000 | 150 | 0 | 0 | 1 | 150 | 1 | 150 | 5.21e-107 | 301 |
| MS.gene70342.t1 | MTR_8g091620 | 98.667 | 150 | 2 | 0 | 1 | 150 | 1 | 150 | 2.56e-105 | 297 |
| MS.gene70342.t1 | MTR_8g058537 | 100.000 | 144 | 0 | 0 | 1 | 144 | 1 | 144 | 1.45e-103 | 292 |
| MS.gene70342.t1 | MTR_8g058420 | 100.000 | 144 | 0 | 0 | 1 | 144 | 1 | 144 | 1.45e-103 | 292 |
| MS.gene70342.t1 | MTR_1g088710 | 73.267 | 101 | 9 | 1 | 1 | 101 | 1 | 83 | 8.01e-50 | 155 |
| MS.gene70342.t1 | MTR_8g092200 | 32.231 | 121 | 78 | 2 | 2 | 122 | 7 | 123 | 6.28e-15 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70342.t1 | AT5G27720 | 77.241 | 145 | 12 | 1 | 1 | 145 | 1 | 124 | 4.16e-60 | 182 |
| MS.gene70342.t1 | AT1G76300 | 33.333 | 99 | 65 | 1 | 2 | 100 | 7 | 104 | 2.03e-14 | 65.9 |
| MS.gene70342.t1 | AT1G20580 | 33.663 | 101 | 64 | 2 | 2 | 100 | 7 | 106 | 6.93e-14 | 64.7 |
Find 51 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTAGGATGGAGATAGATTT+TGG | 0.264813 | 4.1:+9695746 | MS.gene70342:intron |
| AGGGAGGATGCTGCTGGTGC+TGG | 0.332056 | 4.1:+9696861 | MS.gene70342:CDS |
| TTTCCTCGTATGTAGCATTC+AGG | 0.370451 | 4.1:-9695775 | None:intergenic |
| ACCTGGTGTGGGACGTGGTA+GGG | 0.379220 | 4.1:+9696830 | MS.gene70342:CDS |
| GCTAGAGGAGCCGGAGGCCG+AGG | 0.384622 | 4.1:+9696930 | MS.gene70342:CDS |
| GTAGGTGCTGGGCGGGGTAG+AGG | 0.398941 | 4.1:+9697519 | MS.gene70342:intron |
| TTCCTCCAGGCTTTCCACCT+TGG | 0.401016 | 4.1:-9696962 | None:intergenic |
| CCTGGTGTGGGACGTGGTAG+GGG | 0.408573 | 4.1:+9696831 | MS.gene70342:CDS |
| GATGGTGGGGCTAGAGGAGC+CGG | 0.409841 | 4.1:+9696921 | MS.gene70342:CDS |
| TTAGGTTATCGACAAAGTTC+AGG | 0.410051 | 4.1:+9696303 | MS.gene70342:intron |
| GAGGAGCCGGAGGCCGAGGC+AGG | 0.410182 | 4.1:+9696934 | MS.gene70342:CDS |
| AGAGACATATAATGGGCATT+TGG | 0.429273 | 4.1:+9695572 | MS.gene70342:CDS |
| GCTAGCCCTGCCTCGGCCTC+CGG | 0.431923 | 4.1:-9696940 | None:intergenic |
| GATTTACCTCTGCTTCCTCC+AGG | 0.434977 | 4.1:-9696975 | None:intergenic |
| CACCTTGGCTAGCCCTGCCT+CGG | 0.439949 | 4.1:-9696947 | None:intergenic |
| CAGGAAGAAAAGAGCCGTAC+AGG | 0.450547 | 4.1:+9696322 | MS.gene70342:CDS |
| GCTAGCCAAGGTGGAAAGCC+TGG | 0.450993 | 4.1:+9696957 | MS.gene70342:CDS |
| GACGTGGTAGGGGTAGAGGT+AGG | 0.454494 | 4.1:+9696841 | MS.gene70342:CDS |
| CACCTGGTGTGGGACGTGGT+AGG | 0.455282 | 4.1:+9696829 | MS.gene70342:CDS |
| AGAGGTAGGGAGGATGCTGC+TGG | 0.457443 | 4.1:+9696855 | MS.gene70342:CDS |
| GTGGGACGTGGTAGGGGTAG+AGG | 0.457910 | 4.1:+9696837 | MS.gene70342:CDS |
| TAGAGGTACAAATAACTTCT+CGG | 0.459260 | 4.1:-9695626 | None:intergenic |
| GCTGGTGGACGCCAAACAAA+AGG | 0.478487 | 4.1:+9696879 | MS.gene70342:CDS |
| AAGCCACCTGGTGTGGGACG+TGG | 0.485336 | 4.1:+9696825 | MS.gene70342:CDS |
| CCACCATTACATACCTCATC+AGG | 0.487502 | 4.1:-9695820 | None:intergenic |
| ATTTGGTTAATTGCGATACA+TGG | 0.494307 | 4.1:+9695589 | MS.gene70342:CDS |
| TTTGATGATGGTGGGGCTAG+AGG | 0.507529 | 4.1:+9696915 | MS.gene70342:CDS |
| ACGTGGTAGGGGTAGAGGTA+GGG | 0.508609 | 4.1:+9696842 | MS.gene70342:CDS |
| CCCCTACCACGTCCCACACC+AGG | 0.510334 | 4.1:-9696831 | None:intergenic |
| GGACGCCAAACAAAAGGCAC+TGG | 0.511420 | 4.1:+9696885 | MS.gene70342:CDS |
| AAAATGGAGAGACATATAAT+GGG | 0.512411 | 4.1:+9695565 | MS.gene70342:CDS |
| GAGGATGCTGCTGGTGCTGG+TGG | 0.518067 | 4.1:+9696864 | MS.gene70342:CDS |
| GCAGTCTTAAGAAGAGAAAG+AGG | 0.523025 | 4.1:-9695409 | None:intergenic |
| CAAACAAAAGGCACTGGGCG+TGG | 0.536007 | 4.1:+9696891 | MS.gene70342:CDS |
| AGATCGCAAGCCACCTGGTG+TGG | 0.544354 | 4.1:+9696818 | MS.gene70342:intron |
| TGGTAGGGGTAGAGGTAGGG+AGG | 0.553128 | 4.1:+9696845 | MS.gene70342:CDS |
| GACTGCACAAGGCCACCCTA+TGG | 0.555565 | 4.1:+9695426 | MS.gene70342:CDS |
| AGGAGCCGGAGGCCGAGGCA+GGG | 0.555849 | 4.1:+9696935 | MS.gene70342:CDS |
| GATCGCAAGCCACCTGGTGT+GGG | 0.560007 | 4.1:+9696819 | MS.gene70342:intron |
| AATAATACTTCGTACCTGTA+CGG | 0.560276 | 4.1:-9696336 | None:intergenic |
| GGCCGAGGCAGGGCTAGCCA+AGG | 0.579681 | 4.1:+9696945 | MS.gene70342:CDS |
| GGAAAGCCTGGAGGAAGCAG+AGG | 0.582079 | 4.1:+9696969 | MS.gene70342:CDS |
| TCTCTTCTTAAGACTGCACA+AGG | 0.621157 | 4.1:+9695415 | MS.gene70342:CDS |
| CGAGGCAGGGCTAGCCAAGG+TGG | 0.621999 | 4.1:+9696948 | MS.gene70342:CDS |
| GACGCCAAACAAAAGGCACT+GGG | 0.628038 | 4.1:+9696886 | MS.gene70342:CDS |
| GGTGGGGCTAGAGGAGCCGG+AGG | 0.637584 | 4.1:+9696924 | MS.gene70342:CDS |
| GTACCTTCGAGTTCCTGATG+AGG | 0.661844 | 4.1:+9695807 | MS.gene70342:CDS |
| CTACCACGTCCCACACCAGG+TGG | 0.667375 | 4.1:-9696828 | None:intergenic |
| ATACCTCATCAGGAACTCGA+AGG | 0.675708 | 4.1:-9695810 | None:intergenic |
| ATGCCTGAATGCTACATACG+AGG | 0.709688 | 4.1:+9695772 | MS.gene70342:CDS |
| AGCCAAGGTGGAAAGCCTGG+AGG | 0.717081 | 4.1:+9696960 | MS.gene70342:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAGTAAAATAAATAAAA+AGG | - | chr4.1:9695465-9695484 | None:intergenic | 10.0% |
| !!! | AACTTTATTTTTTATTTAAC+TGG | - | chr4.1:9696775-9696794 | None:intergenic | 10.0% |
| !!! | ATTTTCTTAAATAACATAAA+AGG | - | chr4.1:9696058-9696077 | None:intergenic | 10.0% |
| !!! | TTTTCTTAAATAACATAAAA+GGG | - | chr4.1:9696057-9696076 | None:intergenic | 10.0% |
| !!! | TTTTTATTTATTTTACTTTG+TGG | + | chr4.1:9695464-9695483 | MS.gene70342:intron | 10.0% |
| !! | AATCAGAAGAAAATTATATA+TGG | - | chr4.1:9696652-9696671 | None:intergenic | 15.0% |
| !! | CAAATGCATAAAAATTATAT+AGG | + | chr4.1:9697426-9697445 | MS.gene70342:intron | 15.0% |
| !! | TGAAAATAAAATATAATACC+AGG | - | chr4.1:9697284-9697303 | None:intergenic | 15.0% |
| !!! | ATGTTATTTAAGAAAATCAT+TGG | + | chr4.1:9696061-9696080 | MS.gene70342:intron | 15.0% |
| !!! | TTTAATTTGTTATTGTTGAA+AGG | + | chr4.1:9695692-9695711 | MS.gene70342:intron | 15.0% |
| !! | AAATTATCTGATTCACTAAA+AGG | - | chr4.1:9696224-9696243 | None:intergenic | 20.0% |
| !! | AATTATCTGATTCACTAAAA+GGG | - | chr4.1:9696223-9696242 | None:intergenic | 20.0% |
| !! | AGTTATTTATAAAGAGATCA+AGG | + | chr4.1:9695859-9695878 | MS.gene70342:intron | 20.0% |
| !! | GTTATTTATAAAGAGATCAA+GGG | + | chr4.1:9695860-9695879 | MS.gene70342:intron | 20.0% |
| !! | TATTTCAATCCAAAATCTAA+AGG | - | chr4.1:9696486-9696505 | None:intergenic | 20.0% |
| !! | TTTAAACTAATGATATGAAG+TGG | - | chr4.1:9695939-9695958 | None:intergenic | 20.0% |
| !!! | TATGAATTTTGATTGAAACT+GGG | + | chr4.1:9695721-9695740 | MS.gene70342:intron | 20.0% |
| !!! | TTAGATTTTGGATTGAAATA+TGG | + | chr4.1:9696486-9696505 | MS.gene70342:intron | 20.0% |
| !!! | TTATGAATTTTGATTGAAAC+TGG | + | chr4.1:9695720-9695739 | MS.gene70342:intron | 20.0% |
| ! | AAAAATGGAGAGACATATAA+TGG | + | chr4.1:9695564-9695583 | MS.gene70342:CDS | 25.0% |
| ! | AAAATGGAGAGACATATAAT+GGG | + | chr4.1:9695565-9695584 | MS.gene70342:CDS | 25.0% |
| ! | AAACTCTTTGAACTATGATA+TGG | - | chr4.1:9697261-9697280 | None:intergenic | 25.0% |
| ! | TAAGAAAATCATTGGTGAAT+AGG | + | chr4.1:9696069-9696088 | MS.gene70342:intron | 25.0% |
| ! | TGATAAATCCTAAATTGACT+TGG | + | chr4.1:9696410-9696429 | MS.gene70342:intron | 25.0% |
| ! | TTACCAATTCTGTAATTTGA+CGG | + | chr4.1:9697377-9697396 | MS.gene70342:intron | 25.0% |
| ! | TTACCTTGATACATGAATAT+TGG | + | chr4.1:9696605-9696624 | MS.gene70342:intron | 25.0% |
| !! | AACAATAATAACCTTTTACG+CGG | - | chr4.1:9697346-9697365 | None:intergenic | 25.0% |
| !! | TCAAATACCTTTTCTTCTTT+TGG | + | chr4.1:9697497-9697516 | MS.gene70342:intron | 25.0% |
| !!! | AAAAAAGAGCATTACTTTAG+AGG | - | chr4.1:9695646-9695665 | None:intergenic | 25.0% |
| AAGCTGAGTAAGATATAAAG+TGG | + | chr4.1:9696440-9696459 | MS.gene70342:intron | 30.0% | |
| AATAATACTTCGTACCTGTA+CGG | - | chr4.1:9696339-9696358 | None:intergenic | 30.0% | |
| ACACCAATATTCATGTATCA+AGG | - | chr4.1:9696611-9696630 | None:intergenic | 30.0% | |
| ACTATGATATGGTGAATTTG+AGG | - | chr4.1:9697250-9697269 | None:intergenic | 30.0% | |
| AGATAGAAGAAAACACATAG+AGG | - | chr4.1:9697029-9697048 | None:intergenic | 30.0% | |
| AGATTGATATGTTGGAATAG+TGG | + | chr4.1:9695983-9696002 | MS.gene70342:intron | 30.0% | |
| ATTTGGTTAATTGCGATACA+TGG | + | chr4.1:9695589-9695608 | MS.gene70342:CDS | 30.0% | |
| GCAATAGTAGATTGATATGT+TGG | + | chr4.1:9695975-9695994 | MS.gene70342:intron | 30.0% | |
| GTAACTACTTTACCTTTCAA+AGG | + | chr4.1:9695243-9695262 | MS.gene70342:intron | 30.0% | |
| TCAACAAAATTGAACCACTA+GGG | + | chr4.1:9695308-9695327 | MS.gene70342:intron | 30.0% | |
| TTCAACAAAATTGAACCACT+AGG | + | chr4.1:9695307-9695326 | MS.gene70342:intron | 30.0% | |
| TTGTCGATAACCTAAATCAA+AGG | - | chr4.1:9696298-9696317 | None:intergenic | 30.0% | |
| ! | AATCTGTCACCTTTAGATTT+TGG | + | chr4.1:9696474-9696493 | MS.gene70342:intron | 30.0% |
| ! | ATACCTTTTCTTCTTTTGGT+AGG | + | chr4.1:9697501-9697520 | MS.gene70342:intron | 30.0% |
| ! | ATGGTGAATTTGAGGTATTA+GGG | - | chr4.1:9697242-9697261 | None:intergenic | 30.0% |
| ! | TAGAGGTACAAATAACTTCT+CGG | - | chr4.1:9695629-9695648 | None:intergenic | 30.0% |
| ! | TATGGTGAATTTGAGGTATT+AGG | - | chr4.1:9697243-9697262 | None:intergenic | 30.0% |
| ! | TGCTTTATTGCCTTTGATTT+AGG | + | chr4.1:9696285-9696304 | MS.gene70342:intron | 30.0% |
| ! | TTCTGATTGATTCTGACTTA+GGG | + | chr4.1:9696664-9696683 | MS.gene70342:intron | 30.0% |
| !! | AATCCTAAATTGACTTGGAA+TGG | + | chr4.1:9696415-9696434 | MS.gene70342:intron | 30.0% |
| !! | AGGTTTTTGTTACTTACCAT+AGG | - | chr4.1:9695445-9695464 | None:intergenic | 30.0% |
| !! | ATCCTAAATTGACTTGGAAT+GGG | + | chr4.1:9696416-9696435 | MS.gene70342:intron | 30.0% |
| !! | ATTTGTTATTGTTGAAAGGC+TGG | + | chr4.1:9695696-9695715 | MS.gene70342:intron | 30.0% |
| !! | GGTTTTTGTTACTTACCATA+GGG | - | chr4.1:9695444-9695463 | None:intergenic | 30.0% |
| !! | TTGGAATAGTGGATTCTTAT+TGG | + | chr4.1:9695994-9696013 | MS.gene70342:intron | 30.0% |
| !! | TTTGAACTTGTTGTAACAGT+TGG | + | chr4.1:9695533-9695552 | MS.gene70342:intron | 30.0% |
| AAATGGCATTTCAACTTGTG+TGG | - | chr4.1:9696741-9696760 | None:intergenic | 35.0% | |
| AACCTTACCTTGTGATCTAT+TGG | + | chr4.1:9696106-9696125 | MS.gene70342:intron | 35.0% | |
| AATGGCATTTCAACTTGTGT+GGG | - | chr4.1:9696740-9696759 | None:intergenic | 35.0% | |
| AGAAAGTTATTCCGCGTAAA+AGG | + | chr4.1:9697332-9697351 | MS.gene70342:intron | 35.0% | |
| GAACCGTCAAATTACAGAAT+TGG | - | chr4.1:9697383-9697402 | None:intergenic | 35.0% | |
| GACTATAACATAAACCCTAG+TGG | - | chr4.1:9695325-9695344 | None:intergenic | 35.0% | |
| TAGAAGAAAACACATAGAGG+TGG | - | chr4.1:9697026-9697045 | None:intergenic | 35.0% | |
| TATTGGTCATGGGTTTAGTT+GGG | + | chr4.1:9696123-9696142 | MS.gene70342:intron | 35.0% | |
| TCATAGTTCAAAGAGTTTCC+TGG | + | chr4.1:9697263-9697282 | MS.gene70342:intron | 35.0% | |
| TTAGGTTATCGACAAAGTTC+AGG | + | chr4.1:9696303-9696322 | MS.gene70342:intron | 35.0% | |
| TTGATTGAAACTGGGAATGT+AGG | + | chr4.1:9695729-9695748 | MS.gene70342:intron | 35.0% | |
| ! | ACACTACAGAGATGTAGTTT+TGG | - | chr4.1:9696523-9696542 | None:intergenic | 35.0% |
| ! | ACTACATCTCTGTAGTGTTT+TGG | + | chr4.1:9696525-9696544 | MS.gene70342:intron | 35.0% |
| ! | CTTCTGATTGATTCTGACTT+AGG | + | chr4.1:9696663-9696682 | MS.gene70342:intron | 35.0% |
| ! | TGTAGGATGGAGATAGATTT+TGG | + | chr4.1:9695746-9695765 | MS.gene70342:intron | 35.0% |
| !! | AGAGACATATAATGGGCATT+TGG | + | chr4.1:9695572-9695591 | MS.gene70342:CDS | 35.0% |
| !! | ATTCACTGTTAGCCTTTGAA+AGG | - | chr4.1:9695258-9695277 | None:intergenic | 35.0% |
| !! | TTTTGTTACTTACCATAGGG+TGG | - | chr4.1:9695441-9695460 | None:intergenic | 35.0% |
| AACTGGACGACTGCATAAAA+TGG | - | chr4.1:9696758-9696777 | None:intergenic | 40.0% | |
| ACCCAACAAACTTTCTCTGT+TGG | + | chr4.1:9696566-9696585 | MS.gene70342:intron | 40.0% | |
| ACCCAACAGAGAAAGTTTGT+TGG | - | chr4.1:9696571-9696590 | None:intergenic | 40.0% | |
| ACCTTGTGATCTATTGGTCA+TGG | + | chr4.1:9696112-9696131 | MS.gene70342:intron | 40.0% | |
| CCCAACAAACTTTCTCTGTT+GGG | + | chr4.1:9696567-9696586 | MS.gene70342:intron | 40.0% | |
| CCTTGTGATCTATTGGTCAT+GGG | + | chr4.1:9696113-9696132 | MS.gene70342:intron | 40.0% | |
| CTATTGGTCATGGGTTTAGT+TGG | + | chr4.1:9696122-9696141 | MS.gene70342:intron | 40.0% | |
| GACCAATAGATCACAAGGTA+AGG | - | chr4.1:9696111-9696130 | None:intergenic | 40.0% | |
| GCACCTACCAAAAGAAGAAA+AGG | - | chr4.1:9697507-9697526 | None:intergenic | 40.0% | |
| GCAGTCTTAAGAAGAGAAAG+AGG | - | chr4.1:9695412-9695431 | None:intergenic | 40.0% | |
| GTTCCTGATGAGGTATGTAA+TGG | + | chr4.1:9695817-9695836 | MS.gene70342:intron | 40.0% | |
| TCTAAAGGTGACAGATTCAC+AGG | - | chr4.1:9696471-9696490 | None:intergenic | 40.0% | |
| TCTCTTCTTAAGACTGCACA+AGG | + | chr4.1:9695415-9695434 | MS.gene70342:CDS | 40.0% | |
| TGCCCATTCCAAGTCAATTT+AGG | - | chr4.1:9696421-9696440 | None:intergenic | 40.0% | |
| TGGTGAATAGGTTGCTAAGA+AGG | + | chr4.1:9696081-9696100 | MS.gene70342:intron | 40.0% | |
| TTGAAACTGGGAATGTAGGA+TGG | + | chr4.1:9695733-9695752 | MS.gene70342:intron | 40.0% | |
| TTTCCTCGTATGTAGCATTC+AGG | - | chr4.1:9695778-9695797 | None:intergenic | 40.0% | |
| ! | AGGATGGAGATAGATTTTGG+CGG | + | chr4.1:9695749-9695768 | MS.gene70342:intron | 40.0% |
| ! | ATTTCTGATTCGTCGCAACA+TGG | - | chr4.1:9695282-9695301 | None:intergenic | 40.0% |
| ! | CCCAACAGAGAAAGTTTGTT+GGG | - | chr4.1:9696570-9696589 | None:intergenic | 40.0% |
| ! | TTCTTCTTTTGGTAGGTGCT+GGG | + | chr4.1:9697508-9697527 | MS.gene70342:intron | 40.0% |
| ! | TTTCTTCTTTTGGTAGGTGC+TGG | + | chr4.1:9697507-9697526 | MS.gene70342:intron | 40.0% |
| !! | GAACTTGTTGTAACAGTTGG+TGG | + | chr4.1:9695536-9695555 | MS.gene70342:intron | 40.0% |
| !!! | CTACAGAGATGTAGTTTTGG+TGG | - | chr4.1:9696520-9696539 | None:intergenic | 40.0% |
| AGAGTATGAGCACAACCTTG+AGG | - | chr4.1:9696175-9696194 | None:intergenic | 45.0% | |
| ATACCTCATCAGGAACTCGA+AGG | - | chr4.1:9695813-9695832 | None:intergenic | 45.0% | |
| ATGCCTGAATGCTACATACG+AGG | + | chr4.1:9695772-9695791 | MS.gene70342:CDS | 45.0% | |
| CCACCATTACATACCTCATC+AGG | - | chr4.1:9695823-9695842 | None:intergenic | 45.0% | |
| CCCATGACCAATAGATCACA+AGG | - | chr4.1:9696116-9696135 | None:intergenic | 45.0% | |
| CCTGATGAGGTATGTAATGG+TGG | + | chr4.1:9695820-9695839 | MS.gene70342:intron | 45.0% | |
| GAGGAAGCTGCAACAAAAGA+AGG | - | chr4.1:9695393-9695412 | None:intergenic | 45.0% | |
| GGGAAAAACCTTGTGCTTGA+GGG | + | chr4.1:9696143-9696162 | MS.gene70342:intron | 45.0% | |
| TGGGAAAAACCTTGTGCTTG+AGG | + | chr4.1:9696142-9696161 | MS.gene70342:intron | 45.0% | |
| !! | CAGTTGGTGGAGCTGAAAAA+TGG | + | chr4.1:9695549-9695568 | MS.gene70342:intron | 45.0% |
| CAGGAAGAAAAGAGCCGTAC+AGG | + | chr4.1:9696322-9696341 | MS.gene70342:CDS | 50.0% | |
| GATTTACCTCTGCTTCCTCC+AGG | - | chr4.1:9696978-9696997 | None:intergenic | 50.0% | |
| GCTTGAGGGTTTAAGCCTCA+AGG | + | chr4.1:9696157-9696176 | MS.gene70342:intron | 50.0% | |
| GGCTTAAACCCTCAAGCACA+AGG | - | chr4.1:9696154-9696173 | None:intergenic | 50.0% | |
| ! | GGTGGCTTGCGATCTGAAAA+AGG | - | chr4.1:9696813-9696832 | None:intergenic | 50.0% |
| ! | GTACCTTCGAGTTCCTGATG+AGG | + | chr4.1:9695807-9695826 | MS.gene70342:CDS | 50.0% |
| ! | TTTTCAGATCGCAAGCCACC+TGG | + | chr4.1:9696813-9696832 | MS.gene70342:intron | 50.0% |
| !! | GACGCCAAACAAAAGGCACT+GGG | + | chr4.1:9696886-9696905 | MS.gene70342:CDS | 50.0% |
| !! | TTTGATGATGGTGGGGCTAG+AGG | + | chr4.1:9696915-9696934 | MS.gene70342:CDS | 50.0% |
| !!! | ACTGGGCGTGGTTTTGATGA+TGG | + | chr4.1:9696903-9696922 | MS.gene70342:CDS | 50.0% |
| !!! | GCGTGGTTTTGATGATGGTG+GGG | + | chr4.1:9696908-9696927 | MS.gene70342:CDS | 50.0% |
| !!! | GGCGTGGTTTTGATGATGGT+GGG | + | chr4.1:9696907-9696926 | MS.gene70342:CDS | 50.0% |
| !!! | TTCTTTTGGTAGGTGCTGGG+CGG | + | chr4.1:9697511-9697530 | MS.gene70342:intron | 50.0% |
| ACGTGGTAGGGGTAGAGGTA+GGG | + | chr4.1:9696842-9696861 | MS.gene70342:CDS | 55.0% | |
| TTCCTCCAGGCTTTCCACCT+TGG | - | chr4.1:9696965-9696984 | None:intergenic | 55.0% | |
| ! | CACGCCCAGTGCCTTTTGTT+TGG | - | chr4.1:9696893-9696912 | None:intergenic | 55.0% |
| ! | GCTGGTGGACGCCAAACAAA+AGG | + | chr4.1:9696879-9696898 | MS.gene70342:CDS | 55.0% |
| ! | GGACGCCAAACAAAAGGCAC+TGG | + | chr4.1:9696885-9696904 | MS.gene70342:CDS | 55.0% |
| !! | CAAACAAAAGGCACTGGGCG+TGG | + | chr4.1:9696891-9696910 | MS.gene70342:CDS | 55.0% |
| !!! | GGGCGTGGTTTTGATGATGG+TGG | + | chr4.1:9696906-9696925 | MS.gene70342:CDS | 55.0% |
| !!! | TCTTTTGGTAGGTGCTGGGC+GGG | + | chr4.1:9697512-9697531 | MS.gene70342:intron | 55.0% |
| ACCTGGTGTGGGACGTGGTA+GGG | + | chr4.1:9696830-9696849 | MS.gene70342:CDS | 60.0% | |
| AGAGGTAGGGAGGATGCTGC+TGG | + | chr4.1:9696855-9696874 | MS.gene70342:CDS | 60.0% | |
| AGATCGCAAGCCACCTGGTG+TGG | + | chr4.1:9696818-9696837 | MS.gene70342:intron | 60.0% | |
| AGCCAAGGTGGAAAGCCTGG+AGG | + | chr4.1:9696960-9696979 | MS.gene70342:CDS | 60.0% | |
| GACGTGGTAGGGGTAGAGGT+AGG | + | chr4.1:9696841-9696860 | MS.gene70342:CDS | 60.0% | |
| GACTGCACAAGGCCACCCTA+TGG | + | chr4.1:9695426-9695445 | MS.gene70342:CDS | 60.0% | |
| GATCGCAAGCCACCTGGTGT+GGG | + | chr4.1:9696819-9696838 | MS.gene70342:intron | 60.0% | |
| GCTAGCCAAGGTGGAAAGCC+TGG | + | chr4.1:9696957-9696976 | MS.gene70342:CDS | 60.0% | |
| GGAAAGCCTGGAGGAAGCAG+AGG | + | chr4.1:9696969-9696988 | MS.gene70342:CDS | 60.0% | |
| TGGTAGGGGTAGAGGTAGGG+AGG | + | chr4.1:9696845-9696864 | MS.gene70342:CDS | 60.0% | |
| !!! | CTTTTGGTAGGTGCTGGGCG+GGG | + | chr4.1:9697513-9697532 | MS.gene70342:intron | 60.0% |
| AAGCCACCTGGTGTGGGACG+TGG | + | chr4.1:9696825-9696844 | MS.gene70342:CDS | 65.0% | |
| AGGGAGGATGCTGCTGGTGC+TGG | + | chr4.1:9696861-9696880 | MS.gene70342:CDS | 65.0% | |
| CACCTGGTGTGGGACGTGGT+AGG | + | chr4.1:9696829-9696848 | MS.gene70342:CDS | 65.0% | |
| CCTGGTGTGGGACGTGGTAG+GGG | + | chr4.1:9696831-9696850 | MS.gene70342:CDS | 65.0% | |
| CTACCACGTCCCACACCAGG+TGG | - | chr4.1:9696831-9696850 | None:intergenic | 65.0% | |
| GTGGGACGTGGTAGGGGTAG+AGG | + | chr4.1:9696837-9696856 | MS.gene70342:CDS | 65.0% | |
| ! | CACCTTGGCTAGCCCTGCCT+CGG | - | chr4.1:9696950-9696969 | None:intergenic | 65.0% |
| ! | GAGGATGCTGCTGGTGCTGG+TGG | + | chr4.1:9696864-9696883 | MS.gene70342:CDS | 65.0% |
| !! | GATGGTGGGGCTAGAGGAGC+CGG | + | chr4.1:9696921-9696940 | MS.gene70342:CDS | 65.0% |
| CCCCTACCACGTCCCACACC+AGG | - | chr4.1:9696834-9696853 | None:intergenic | 70.0% | |
| !! | CGAGGCAGGGCTAGCCAAGG+TGG | + | chr4.1:9696948-9696967 | MS.gene70342:CDS | 70.0% |
| !! | GTAGGTGCTGGGCGGGGTAG+AGG | + | chr4.1:9697519-9697538 | MS.gene70342:intron | 70.0% |
| AGGAGCCGGAGGCCGAGGCA+GGG | + | chr4.1:9696935-9696954 | MS.gene70342:CDS | 75.0% | |
| GCTAGAGGAGCCGGAGGCCG+AGG | + | chr4.1:9696930-9696949 | MS.gene70342:CDS | 75.0% | |
| GCTAGCCCTGCCTCGGCCTC+CGG | - | chr4.1:9696943-9696962 | None:intergenic | 75.0% | |
| GGTGGGGCTAGAGGAGCCGG+AGG | + | chr4.1:9696924-9696943 | MS.gene70342:CDS | 75.0% | |
| !! | GGCCGAGGCAGGGCTAGCCA+AGG | + | chr4.1:9696945-9696964 | MS.gene70342:CDS | 75.0% |
| ! | GAGGAGCCGGAGGCCGAGGC+AGG | + | chr4.1:9696934-9696953 | MS.gene70342:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 9695240 | 9697545 | 9695240 | ID=MS.gene70342 |
| chr4.1 | mRNA | 9695240 | 9697545 | 9695240 | ID=MS.gene70342.t1;Parent=MS.gene70342 |
| chr4.1 | exon | 9695240 | 9695242 | 9695240 | ID=MS.gene70342.t1.exon1;Parent=MS.gene70342.t1 |
| chr4.1 | CDS | 9695240 | 9695242 | 9695240 | ID=cds.MS.gene70342.t1;Parent=MS.gene70342.t1 |
| chr4.1 | exon | 9695406 | 9695447 | 9695406 | ID=MS.gene70342.t1.exon2;Parent=MS.gene70342.t1 |
| chr4.1 | CDS | 9695406 | 9695447 | 9695406 | ID=cds.MS.gene70342.t1;Parent=MS.gene70342.t1 |
| chr4.1 | exon | 9695552 | 9695650 | 9695552 | ID=MS.gene70342.t1.exon3;Parent=MS.gene70342.t1 |
| chr4.1 | CDS | 9695552 | 9695650 | 9695552 | ID=cds.MS.gene70342.t1;Parent=MS.gene70342.t1 |
| chr4.1 | exon | 9695751 | 9695828 | 9695751 | ID=MS.gene70342.t1.exon4;Parent=MS.gene70342.t1 |
| chr4.1 | CDS | 9695751 | 9695828 | 9695751 | ID=cds.MS.gene70342.t1;Parent=MS.gene70342.t1 |
| chr4.1 | exon | 9696307 | 9696343 | 9696307 | ID=MS.gene70342.t1.exon5;Parent=MS.gene70342.t1 |
| chr4.1 | CDS | 9696307 | 9696343 | 9696307 | ID=cds.MS.gene70342.t1;Parent=MS.gene70342.t1 |
| chr4.1 | exon | 9696820 | 9696990 | 9696820 | ID=MS.gene70342.t1.exon6;Parent=MS.gene70342.t1 |
| chr4.1 | CDS | 9696820 | 9696990 | 9696820 | ID=cds.MS.gene70342.t1;Parent=MS.gene70342.t1 |
| chr4.1 | exon | 9697523 | 9697545 | 9697523 | ID=MS.gene70342.t1.exon7;Parent=MS.gene70342.t1 |
| chr4.1 | CDS | 9697523 | 9697545 | 9697523 | ID=cds.MS.gene70342.t1;Parent=MS.gene70342.t1 |
| Gene Sequence |
| Protein sequence |
