Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71239.t1 | XP_003628713.2 | 96.4 | 991 | 36 | 0 | 1 | 991 | 1 | 991 | 0.00E+00 | 1848.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71239.t1 | Q8L6J5 | 72.3 | 918 | 232 | 8 | 74 | 991 | 107 | 1002 | 0.0e+00 | 1345.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71239.t1 | A0A396GPC9 | 96.4 | 991 | 36 | 0 | 1 | 991 | 1 | 991 | 0.0e+00 | 1848.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene71239 | 0.805956 | 1.04E-49 | -1.69E-46 |
| MS.gene049293 | MS.gene71239 | -0.800495 | 1.40E-48 | -1.69E-46 |
| MS.gene049824 | MS.gene71239 | 0.803964 | 2.71E-49 | -1.69E-46 |
| MS.gene049825 | MS.gene71239 | 0.813728 | 2.21E-51 | -1.69E-46 |
| MS.gene050945 | MS.gene71239 | 0.802464 | 5.54E-49 | -1.69E-46 |
| MS.gene051700 | MS.gene71239 | 0.810025 | 1.41E-50 | -1.69E-46 |
| MS.gene05188 | MS.gene71239 | 0.803794 | 2.94E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene71239 | 0.820113 | 8.14E-53 | -1.69E-46 |
| MS.gene052584 | MS.gene71239 | 0.821289 | 4.37E-53 | -1.69E-46 |
| MS.gene052717 | MS.gene71239 | 0.801036 | 1.09E-48 | -1.69E-46 |
| MS.gene05308 | MS.gene71239 | 0.810343 | 1.21E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene71239 | 0.803883 | 2.82E-49 | -1.69E-46 |
| MS.gene053294 | MS.gene71239 | 0.815726 | 7.98E-52 | -1.69E-46 |
| MS.gene053963 | MS.gene71239 | 0.834049 | 3.75E-56 | -1.69E-46 |
| MS.gene054222 | MS.gene71239 | 0.819089 | 1.39E-52 | -1.69E-46 |
| MS.gene054576 | MS.gene71239 | 0.813819 | 2.11E-51 | -1.69E-46 |
| MS.gene055808 | MS.gene71239 | 0.834264 | 3.31E-56 | -1.69E-46 |
| MS.gene056091 | MS.gene71239 | 0.842493 | 2.50E-58 | -1.69E-46 |
| MS.gene056403 | MS.gene71239 | 0.862444 | 5.05E-64 | -1.69E-46 |
| MS.gene05659 | MS.gene71239 | 0.806379 | 8.47E-50 | -1.69E-46 |
| MS.gene056605 | MS.gene71239 | 0.863213 | 2.92E-64 | -1.69E-46 |
| MS.gene05689 | MS.gene71239 | 0.857283 | 1.81E-62 | -1.69E-46 |
| MS.gene05953 | MS.gene71239 | 0.811181 | 7.96E-51 | -1.69E-46 |
| MS.gene05954 | MS.gene71239 | 0.814966 | 1.18E-51 | -1.69E-46 |
| MS.gene05985 | MS.gene71239 | -0.818681 | 1.73E-52 | -1.69E-46 |
| MS.gene059935 | MS.gene71239 | 0.831757 | 1.39E-55 | -1.69E-46 |
| MS.gene060365 | MS.gene71239 | 0.850065 | 2.16E-60 | -1.69E-46 |
| MS.gene060429 | MS.gene71239 | 0.808184 | 3.51E-50 | -1.69E-46 |
| MS.gene060830 | MS.gene71239 | 0.8334 | 5.45E-56 | -1.69E-46 |
| MS.gene060879 | MS.gene71239 | 0.803699 | 3.08E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71239.t1 | MTR_8g065900 | 98.349 | 727 | 12 | 0 | 265 | 991 | 1 | 727 | 0.0 | 1497 |
| MS.gene71239.t1 | MTR_7g017440 | 77.208 | 566 | 128 | 1 | 426 | 991 | 2 | 566 | 0.0 | 918 |
| MS.gene71239.t1 | MTR_8g065960 | 97.287 | 258 | 7 | 0 | 1 | 258 | 1 | 258 | 9.72e-179 | 519 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71239.t1 | AT1G68990 | 63.048 | 1004 | 330 | 12 | 1 | 991 | 1 | 976 | 0.0 | 1305 |
| MS.gene71239.t1 | AT1G68990 | 62.611 | 1011 | 330 | 13 | 1 | 991 | 1 | 983 | 0.0 | 1297 |
| MS.gene71239.t1 | AT5G15700 | 61.986 | 997 | 348 | 10 | 1 | 991 | 40 | 1011 | 0.0 | 1238 |
| MS.gene71239.t1 | AT5G15700 | 61.469 | 994 | 351 | 11 | 1 | 987 | 40 | 1008 | 0.0 | 1222 |
| MS.gene71239.t1 | AT2G24120 | 61.860 | 860 | 301 | 7 | 135 | 991 | 158 | 993 | 0.0 | 1137 |
| MS.gene71239.t1 | AT2G24120 | 59.441 | 752 | 278 | 7 | 135 | 883 | 158 | 885 | 0.0 | 943 |
Find 244 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAGAGAGTGAACAAAATT+TGG | 0.151766 | 8.3:-36872283 | None:intergenic |
| ACTTGACTGAAACGCGAAAA+TGG | 0.186625 | 8.3:-36863702 | None:intergenic |
| CAGGGGTGCATGATTCTTAT+TGG | 0.190275 | 8.3:+36872461 | MS.gene71239:intron |
| CGAGGCTGCAAGAAGTATTA+TGG | 0.198094 | 8.3:+36871623 | MS.gene71239:CDS |
| GGAAGCACGTTTGGCTAATT+TGG | 0.201255 | 8.3:-36863592 | None:intergenic |
| TGGTATTGCCAAGGGTATTA+AGG | 0.233566 | 8.3:-36868138 | None:intergenic |
| ACCACCATCTCCGAATTTAT+TGG | 0.238950 | 8.3:-36866940 | None:intergenic |
| AGCAACGTGATGCTTTAAAA+TGG | 0.258414 | 8.3:+36867984 | MS.gene71239:CDS |
| CAAGCTTTGGGGATAGTTAA+AGG | 0.258733 | 8.3:+36866738 | MS.gene71239:CDS |
| TATATGAAATCATTGTTTCT+TGG | 0.260255 | 8.3:+36864110 | MS.gene71239:CDS |
| GAAAGGGTAGCCTCGGGATT+GGG | 0.281035 | 8.3:-36869151 | None:intergenic |
| ATTCAAGCTGCTTGTCAAAT+AGG | 0.291014 | 8.3:+36864317 | MS.gene71239:CDS |
| CAAGAGAGTGAACAAAATTT+GGG | 0.306701 | 8.3:-36872282 | None:intergenic |
| AGAAACAATGATTTCATATA+AGG | 0.307873 | 8.3:-36864107 | None:intergenic |
| TGTTGGTTCCACCGAATAAC+TGG | 0.311327 | 8.3:+36867597 | MS.gene71239:CDS |
| GCAGAAGAAGCAACAAGCTT+TGG | 0.313784 | 8.3:+36866725 | MS.gene71239:CDS |
| TCTTCTGTGTCTAGTTCCTC+TGG | 0.315797 | 8.3:-36868554 | None:intergenic |
| AATATGGTCAAGTTGATTCT+TGG | 0.318665 | 8.3:-36868011 | None:intergenic |
| ACTCTACGAAACTCCGATAT+TGG | 0.319241 | 8.3:+36872540 | MS.gene71239:CDS |
| TCAAGGCCCTTCTGTATCAT+AGG | 0.322000 | 8.3:-36867151 | None:intergenic |
| GAAGAAAGAGCCTCGATTAG+AGG | 0.324239 | 8.3:+36863935 | MS.gene71239:CDS |
| ATGAATCAGAAATTCGAAAA+TGG | 0.329535 | 8.3:+36868576 | MS.gene71239:CDS |
| AGAAGCAGCAAGAGAGTATC+AGG | 0.331278 | 8.3:+36864040 | MS.gene71239:CDS |
| CAGAAGAAGCAACAAGCTTT+GGG | 0.332266 | 8.3:+36866726 | MS.gene71239:CDS |
| TGTTGATGACTAATAGTAAT+GGG | 0.333285 | 8.3:+36864276 | MS.gene71239:CDS |
| CGTTACAGGTCATGGTAAAA+AGG | 0.336398 | 8.3:+36872242 | MS.gene71239:intron |
| ATTTATTGGCTGGTGGTTCT+AGG | 0.337025 | 8.3:-36866926 | None:intergenic |
| GTAATAACAGCCATCATATC+AGG | 0.337951 | 8.3:-36864233 | None:intergenic |
| CTGTCTGCTTTACCAACTTT+CGG | 0.346118 | 8.3:-36871370 | None:intergenic |
| GTTTGCAGAGGGACGTCCTC+TGG | 0.352398 | 8.3:+36868901 | MS.gene71239:CDS |
| AGTCTCCTCGTTCCGGTAAA+GGG | 0.355502 | 8.3:-36873153 | None:intergenic |
| TCGGTGTGATAGATCAAATA+TGG | 0.355912 | 8.3:+36868185 | MS.gene71239:CDS |
| TCAGAAATTGTTAGATCAAA+TGG | 0.366741 | 8.3:+36863899 | MS.gene71239:CDS |
| CCTTCTTGAGGAAGCACGTT+TGG | 0.370723 | 8.3:-36863601 | None:intergenic |
| CCATACCCTGTCCAGTTATT+CGG | 0.373820 | 8.3:-36867608 | None:intergenic |
| GGTATTGCCAAGGGTATTAA+GGG | 0.378778 | 8.3:-36868137 | None:intergenic |
| GATTTCATATAAGGCAAATT+CGG | 0.381464 | 8.3:-36864098 | None:intergenic |
| TATTACTATGCATAAGTTGA+TGG | 0.385728 | 8.3:+36864250 | MS.gene71239:CDS |
| TCTGCAGTCAATCTTGTTGT+TGG | 0.385827 | 8.3:+36870181 | MS.gene71239:CDS |
| TCTCTTTCTCTTCAGCTGTC+AGG | 0.387181 | 8.3:-36866647 | None:intergenic |
| ATCATTTGAAATTGTCTTGA+GGG | 0.389121 | 8.3:-36866991 | None:intergenic |
| GGAGGCAATTCATTGAAATA+AGG | 0.390073 | 8.3:-36864212 | None:intergenic |
| GATACAGAAGATGATTGTTC+TGG | 0.393506 | 8.3:+36863861 | MS.gene71239:CDS |
| GAAAGAGAAACTTGCTAAAG+AGG | 0.394136 | 8.3:+36866662 | MS.gene71239:CDS |
| ACAGTGATGACGTCGGTCTA+TGG | 0.394571 | 8.3:+36871389 | MS.gene71239:CDS |
| CTTTACATCAGAAAACAAAC+TGG | 0.403496 | 8.3:+36863731 | MS.gene71239:CDS |
| AGCCTCGAACATCTCTTCTA+AGG | 0.411325 | 8.3:-36871607 | None:intergenic |
| ATAGATCAAATATGGGCTAA+TGG | 0.413002 | 8.3:+36868193 | MS.gene71239:CDS |
| GTGCGATGGGTCACTCCCCT+TGG | 0.416735 | 8.3:+36871809 | MS.gene71239:CDS |
| TGCGATGGGTCACTCCCCTT+GGG | 0.416968 | 8.3:+36871810 | MS.gene71239:CDS |
| GAACCACCAGCCAATAAATT+CGG | 0.418545 | 8.3:+36866930 | MS.gene71239:CDS |
| ATATGGTCAAGTTGATTCTT+GGG | 0.418609 | 8.3:-36868010 | None:intergenic |
| GAGGCTGCAAGAAGTATTAT+GGG | 0.421452 | 8.3:+36871624 | MS.gene71239:CDS |
| AACGCATGTGGATCAGTTGC+GGG | 0.427848 | 8.3:-36871062 | None:intergenic |
| AAGAGATCAGGCGAAACCTT+GGG | 0.429305 | 8.3:+36866761 | MS.gene71239:CDS |
| TCTCAGTGATGTAGAGGATT+GGG | 0.430471 | 8.3:-36863637 | None:intergenic |
| AGATCCAAGTCTCCTCGTTC+CGG | 0.432465 | 8.3:-36873160 | None:intergenic |
| CAAGCAGGGATGAACTTTGC+AGG | 0.433433 | 8.3:+36872343 | MS.gene71239:CDS |
| TCTCGGTAAGGTTGTACAAC+TGG | 0.437051 | 8.3:-36871836 | None:intergenic |
| AAGTCTCCTCGTTCCGGTAA+AGG | 0.443118 | 8.3:-36873154 | None:intergenic |
| CCAGGTGTCTTCCTACTTCT+CGG | 0.446736 | 8.3:-36871853 | None:intergenic |
| CTTGACTGAAACGCGAAAAT+GGG | 0.448216 | 8.3:-36863701 | None:intergenic |
| TAAGGAGCGTTGTGCGGTTG+AGG | 0.450901 | 8.3:+36871454 | MS.gene71239:CDS |
| TGAAATCATTGTTTCTTGGT+TGG | 0.451320 | 8.3:+36864114 | MS.gene71239:CDS |
| TGGAGGTCGCCTGGCTGACC+TGG | 0.453959 | 8.3:+36868213 | MS.gene71239:CDS |
| ATCTCAGTGATGTAGAGGAT+TGG | 0.455612 | 8.3:-36863638 | None:intergenic |
| GGAACCAACATTGGCATGTA+GGG | 0.456617 | 8.3:-36867584 | None:intergenic |
| ATTACTATGCATAAGTTGAT+GGG | 0.457814 | 8.3:+36864251 | MS.gene71239:CDS |
| AGAAAGGGTAGCCTCGGGAT+TGG | 0.457951 | 8.3:-36869152 | None:intergenic |
| CCTTTGTCTTCCCCATGAAT+CGG | 0.458716 | 8.3:-36866560 | None:intergenic |
| GGGTAGGATATACCGATTCA+TGG | 0.460894 | 8.3:+36866548 | MS.gene71239:intron |
| TCGCACTGCTTGGTTTGTGC+AGG | 0.466104 | 8.3:-36871792 | None:intergenic |
| CAAGGCCCTTCTGTATCATA+GGG | 0.466416 | 8.3:-36867150 | None:intergenic |
| ATCCACATGCGTTGCATGCT+AGG | 0.469299 | 8.3:+36871072 | MS.gene71239:CDS |
| CACGATCCACCAGGTCAGCC+AGG | 0.470522 | 8.3:-36868222 | None:intergenic |
| CAGAAATTCGAAAATGGAAG+TGG | 0.473717 | 8.3:+36868582 | MS.gene71239:CDS |
| TCTATGGAGTGACTTACATC+GGG | 0.473769 | 8.3:+36871405 | MS.gene71239:CDS |
| GCAATGGTTGAAAATACATC+TGG | 0.473980 | 8.3:+36868937 | MS.gene71239:CDS |
| TTGTTGATGACTAATAGTAA+TGG | 0.477594 | 8.3:+36864275 | MS.gene71239:CDS |
| AGCATTTACTGAGGGCCACC+TGG | 0.478266 | 8.3:+36869012 | MS.gene71239:CDS |
| GTTTAGGCCCTTAATACCCT+TGG | 0.481997 | 8.3:+36868130 | MS.gene71239:intron |
| GTTACAAGTATAAAATGCTT+AGG | 0.484560 | 8.3:+36863982 | MS.gene71239:CDS |
| CACCCGTATCTGAACCATCT+TGG | 0.485425 | 8.3:+36868851 | MS.gene71239:CDS |
| TTTACTCAGGAATTGCAGCC+AGG | 0.486150 | 8.3:+36870221 | MS.gene71239:CDS |
| TGCTAGGATGGTTCATGCAA+TGG | 0.487394 | 8.3:+36869613 | MS.gene71239:intron |
| TCTGCAGACAGGCCTCTTGA+AGG | 0.488525 | 8.3:+36869049 | MS.gene71239:CDS |
| CTCTTGAAGGAAAGCGGTGG+TGG | 0.489434 | 8.3:+36869062 | MS.gene71239:CDS |
| TTCTCATATGCCTGTACACC+AGG | 0.489759 | 8.3:+36869171 | MS.gene71239:CDS |
| TTTACCGGAACGAGGAGACT+TGG | 0.490240 | 8.3:+36873156 | MS.gene71239:CDS |
| GGACGTCCTCTGGGGAAGAA+AGG | 0.490556 | 8.3:+36868911 | MS.gene71239:CDS |
| CCCTCCATTTGGTATTGCCA+AGG | 0.491223 | 8.3:-36868147 | None:intergenic |
| TGTGTCTAGTTCCTCTGGGA+GGG | 0.491372 | 8.3:-36868549 | None:intergenic |
| ATACCCTTGGCAATACCAAA+TGG | 0.492890 | 8.3:+36868143 | MS.gene71239:CDS |
| GCAACGTGATGCTTTAAAAT+GGG | 0.495509 | 8.3:+36867985 | MS.gene71239:CDS |
| TGTATTCTCATAACATATGA+TGG | 0.496903 | 8.3:-36867950 | None:intergenic |
| CATGCTGCCAAGCACTGAAA+AGG | 0.497540 | 8.3:-36869100 | None:intergenic |
| ACTTGAGCTTCTTGTCCCCA+AGG | 0.498027 | 8.3:-36866777 | None:intergenic |
| GGTAGGATATACCGATTCAT+GGG | 0.500948 | 8.3:+36866549 | MS.gene71239:CDS |
| AACCAAGATGGTTCAGATAC+GGG | 0.501415 | 8.3:-36868853 | None:intergenic |
| GCTGTAGTGTCAATACTTGA+AGG | 0.503590 | 8.3:-36872023 | None:intergenic |
| CTTCTGTGTCTAGTTCCTCT+GGG | 0.504375 | 8.3:-36868553 | None:intergenic |
| AGGAAATGAACAGGATACTC+AGG | 0.504918 | 8.3:+36872503 | MS.gene71239:CDS |
| GAAGAGATCAGGCGAAACCT+TGG | 0.505993 | 8.3:+36866760 | MS.gene71239:CDS |
| GAACCAAGATGGTTCAGATA+CGG | 0.506679 | 8.3:-36868854 | None:intergenic |
| ATGGGCTAATGGAGGTCGCC+TGG | 0.506947 | 8.3:+36868204 | MS.gene71239:CDS |
| TGTCTTCCTACTTCTCGGTA+AGG | 0.506968 | 8.3:-36871848 | None:intergenic |
| ATTGGCTGGTGGTTCTAGGT+AGG | 0.507239 | 8.3:-36866922 | None:intergenic |
| AAAGGGTAGCCTCGGGATTG+GGG | 0.513035 | 8.3:-36869150 | None:intergenic |
| GCACAAACCAAGCAGTGCGA+TGG | 0.515196 | 8.3:+36871795 | MS.gene71239:CDS |
| AAACTATACCTCATGTTCAA+TGG | 0.516109 | 8.3:-36864345 | None:intergenic |
| GCGAAAAGTACCTGGTGTAC+AGG | 0.516472 | 8.3:-36869181 | None:intergenic |
| ACTTGATTAGCAATGGAAGT+AGG | 0.519938 | 8.3:+36867104 | MS.gene71239:intron |
| TTTGCAGAGGGACGTCCTCT+GGG | 0.521577 | 8.3:+36868902 | MS.gene71239:CDS |
| GGTGTACAGGCATATGAGAA+AGG | 0.521786 | 8.3:-36869168 | None:intergenic |
| GATAGTTAAAGGAAGAGATC+AGG | 0.522704 | 8.3:+36866749 | MS.gene71239:CDS |
| AAGAGAGTATCAGGAATTGT+TGG | 0.526034 | 8.3:+36864049 | MS.gene71239:CDS |
| CCAGATCAAAAGGAGGCTTA+AGG | 0.526268 | 8.3:+36871436 | MS.gene71239:CDS |
| ATTCCTGAGTAAACATCAGC+AGG | 0.527115 | 8.3:-36870211 | None:intergenic |
| GCGACGTTGAGGAAATGAAC+AGG | 0.527386 | 8.3:+36872494 | MS.gene71239:CDS |
| TGCTGATCAAGAGATTTGTA+AGG | 0.527914 | 8.3:+36864163 | MS.gene71239:CDS |
| CGGTGTGATAGATCAAATAT+GGG | 0.528652 | 8.3:+36868186 | MS.gene71239:CDS |
| GGGCCCGAGACCAGATCAAA+AGG | 0.528984 | 8.3:+36871426 | MS.gene71239:CDS |
| CTAAAGAGGAGAAAAGACTT+AGG | 0.530884 | 8.3:+36866676 | MS.gene71239:CDS |
| GCAGTTGCTTGTAAACAAGC+AGG | 0.531102 | 8.3:+36872328 | MS.gene71239:CDS |
| TGAATTGCCTCCTGATATGA+TGG | 0.532213 | 8.3:+36864223 | MS.gene71239:CDS |
| GTAGGTTGCACGAAAGTTGA+AGG | 0.532979 | 8.3:+36868769 | MS.gene71239:intron |
| TGGAACCAACATTGGCATGT+AGG | 0.534779 | 8.3:-36867585 | None:intergenic |
| TATCCCCTACATGCCAATGT+TGG | 0.535161 | 8.3:+36867580 | MS.gene71239:CDS |
| CCATCTCCGAATTTATTGGC+TGG | 0.536502 | 8.3:-36866936 | None:intergenic |
| CACCACCGCTTTCCTTCAAG+AGG | 0.537723 | 8.3:-36869061 | None:intergenic |
| TGCTAGGCGTTTGATCAACC+AGG | 0.539952 | 8.3:+36871088 | MS.gene71239:CDS |
| CATATGAGAAAGGGTAGCCT+CGG | 0.540769 | 8.3:-36869158 | None:intergenic |
| AACACTATGCAGCACTTGGT+AGG | 0.541031 | 8.3:+36869641 | MS.gene71239:CDS |
| TGCCTTAGAAGAGATGTTCG+AGG | 0.542719 | 8.3:+36871605 | MS.gene71239:CDS |
| TCATATGTTATGAGAATACA+TGG | 0.544260 | 8.3:+36867953 | MS.gene71239:CDS |
| GAGTGACCCATCGCACTGCT+TGG | 0.544553 | 8.3:-36871802 | None:intergenic |
| GTTCCACCGAATAACTGGAC+AGG | 0.546205 | 8.3:+36867602 | MS.gene71239:CDS |
| GCAGCAATTGCATTCTTCAA+AGG | 0.549685 | 8.3:-36864143 | None:intergenic |
| AGAAGTATTATGGGTTGGCT+AGG | 0.551256 | 8.3:+36871633 | MS.gene71239:CDS |
| CAACGCATGTGGATCAGTTG+CGG | 0.553854 | 8.3:-36871063 | None:intergenic |
| GCCAATAAATTCGGAGATGG+TGG | 0.554065 | 8.3:+36866939 | MS.gene71239:CDS |
| ACACTATGCAGCACTTGGTA+GGG | 0.554210 | 8.3:+36869642 | MS.gene71239:CDS |
| GTGTCTAGTTCCTCTGGGAG+GGG | 0.555700 | 8.3:-36868548 | None:intergenic |
| AAAGATGGAGACTGAGGCAT+GGG | 0.556184 | 8.3:+36864016 | MS.gene71239:CDS |
| TTATTCGGTGGAACCAACAT+TGG | 0.557827 | 8.3:-36867593 | None:intergenic |
| GTCTATGGAGTGACTTACAT+CGG | 0.558237 | 8.3:+36871404 | MS.gene71239:CDS |
| CCTCCATTTGGTATTGCCAA+GGG | 0.560687 | 8.3:-36868146 | None:intergenic |
| ACAAGTATAAAATGCTTAGG+AGG | 0.561767 | 8.3:+36863985 | MS.gene71239:CDS |
| CACAAACCAAGCAGTGCGAT+GGG | 0.562671 | 8.3:+36871796 | MS.gene71239:CDS |
| CGCCTAGCATGCAACGCATG+TGG | 0.562848 | 8.3:-36871074 | None:intergenic |
| AGCAATGGAAGTAGGAGATA+CGG | 0.563352 | 8.3:+36867112 | MS.gene71239:intron |
| TGGTTCAGATACGGGTGCAT+AGG | 0.563457 | 8.3:-36868845 | None:intergenic |
| GTAATGGGGTTGGTAGTGCT+AGG | 0.563661 | 8.3:+36864291 | MS.gene71239:CDS |
| TTACAACACTATGCAGCACT+TGG | 0.565702 | 8.3:+36869637 | MS.gene71239:CDS |
| GGGACAAGAAGCTCAAGTAA+AGG | 0.565903 | 8.3:+36866782 | MS.gene71239:CDS |
| GTGTACAGGCATATGAGAAA+GGG | 0.567217 | 8.3:-36869167 | None:intergenic |
| TAGGAGGAGACAGATAAAGA+TGG | 0.570475 | 8.3:+36864001 | MS.gene71239:CDS |
| CTCTTCTAAGGCAGTGAGAG+TGG | 0.571123 | 8.3:-36871595 | None:intergenic |
| CAGCCTGCTGATGTTTACTC+AGG | 0.571369 | 8.3:+36870208 | MS.gene71239:CDS |
| TTGAGGGTATGCTTAAATGC+AGG | 0.572429 | 8.3:-36866975 | None:intergenic |
| TAATGGGGTTGGTAGTGCTA+GGG | 0.572498 | 8.3:+36864292 | MS.gene71239:CDS |
| AATCATTTGAAATTGTCTTG+AGG | 0.574540 | 8.3:-36866992 | None:intergenic |
| CTGCAAGAAGTATTATGGGT+TGG | 0.577075 | 8.3:+36871628 | MS.gene71239:CDS |
| TCAAGTATTGACACTACAGC+GGG | 0.577354 | 8.3:+36872026 | MS.gene71239:CDS |
| ACATTAGGTGGACCGAAAGT+TGG | 0.579207 | 8.3:+36871358 | MS.gene71239:intron |
| CCAAACGTGCTTCCTCAAGA+AGG | 0.579330 | 8.3:+36863601 | MS.gene71239:CDS |
| TCTCCGAATTTATTGGCTGG+TGG | 0.580101 | 8.3:-36866933 | None:intergenic |
| AGGTCGCCTGGCTGACCTGG+TGG | 0.582006 | 8.3:+36868216 | MS.gene71239:CDS |
| ATGACTAATAGTAATGGGGT+TGG | 0.583440 | 8.3:+36864281 | MS.gene71239:CDS |
| CTGGCAAATTTGTATGCCAC+TGG | 0.585651 | 8.3:+36868956 | MS.gene71239:CDS |
| CAGAATCGAAAATATCATCC+AGG | 0.587359 | 8.3:-36869030 | None:intergenic |
| GTGGACAAGTTAAGTTATGA+TGG | 0.588242 | 8.3:+36868983 | MS.gene71239:CDS |
| AGAAAATCTCAGTGATGTAG+AGG | 0.588807 | 8.3:-36863643 | None:intergenic |
| ATCACTATCAGACTTGTGAC+TGG | 0.590655 | 8.3:-36866595 | None:intergenic |
| GTCTCCTCGTTCCGGTAAAG+GGG | 0.591775 | 8.3:-36873152 | None:intergenic |
| TCTCCTCGTTCCGGTAAAGG+GGG | 0.591891 | 8.3:-36873151 | None:intergenic |
| TAAAGATGGAGACTGAGGCA+TGG | 0.592884 | 8.3:+36864015 | MS.gene71239:CDS |
| GTACAACCTTACCGAGAAGT+AGG | 0.593326 | 8.3:+36871842 | MS.gene71239:CDS |
| AGGTGAAGCCATTGAACATG+AGG | 0.595122 | 8.3:+36864337 | MS.gene71239:CDS |
| GCAAATTTGTATGCCACTGG+TGG | 0.595435 | 8.3:+36868959 | MS.gene71239:CDS |
| CTGTAGTGTCAATACTTGAA+GGG | 0.597211 | 8.3:-36872022 | None:intergenic |
| GACATAGATCAGAACCAAGA+TGG | 0.599029 | 8.3:-36868865 | None:intergenic |
| ACATTAACAGGCTAGGCACA+TGG | 0.600181 | 8.3:+36867556 | MS.gene71239:intron |
| GACACATGCATGCGACGTTG+AGG | 0.600599 | 8.3:+36872483 | MS.gene71239:CDS |
| TTACTATGCATAAGTTGATG+GGG | 0.603212 | 8.3:+36864252 | MS.gene71239:CDS |
| GGCATACTTGAGTTTGCAGA+GGG | 0.604284 | 8.3:+36868890 | MS.gene71239:CDS |
| TTTGTATGCCACTGGTGGTG+TGG | 0.605437 | 8.3:+36868964 | MS.gene71239:CDS |
| CCAGCCAATAAATTCGGAGA+TGG | 0.605521 | 8.3:+36866936 | MS.gene71239:CDS |
| ATGCGACCCTATGATACAGA+AGG | 0.607263 | 8.3:+36867144 | MS.gene71239:CDS |
| CCGATTCATGGGGAAGACAA+AGG | 0.609611 | 8.3:+36866560 | MS.gene71239:CDS |
| TGGGGAAGAAAGGCTTGCAA+TGG | 0.609801 | 8.3:+36868921 | MS.gene71239:CDS |
| CTGTGTCTAGTTCCTCTGGG+AGG | 0.610769 | 8.3:-36868550 | None:intergenic |
| TCACATCATCACGATCCACC+AGG | 0.613186 | 8.3:-36868231 | None:intergenic |
| ATATGAGAAAGGGTAGCCTC+GGG | 0.613800 | 8.3:-36869157 | None:intergenic |
| TACCCTGTCCAGTTATTCGG+TGG | 0.619231 | 8.3:-36867605 | None:intergenic |
| CCGAGAAGTAGGAAGACACC+TGG | 0.620898 | 8.3:+36871853 | MS.gene71239:CDS |
| AGAGATCAGGCGAAACCTTG+GGG | 0.621202 | 8.3:+36866762 | MS.gene71239:CDS |
| TGCAAGCCTTTCTTCCCCAG+AGG | 0.622297 | 8.3:-36868917 | None:intergenic |
| CGAAAGTTGAAGGAAGAAGA+CGG | 0.625455 | 8.3:+36868779 | MS.gene71239:CDS |
| CAGTTGCTTGTAAACAAGCA+GGG | 0.625484 | 8.3:+36872329 | MS.gene71239:CDS |
| GCGGTGGTGGTTGCAAGCAG+AGG | 0.625852 | 8.3:+36869075 | MS.gene71239:CDS |
| GTTGTACAACTGGAAGCCCA+AGG | 0.625869 | 8.3:-36871826 | None:intergenic |
| CTTGGTTCTGATCTATGTCG+AGG | 0.628300 | 8.3:+36868869 | MS.gene71239:CDS |
| TTCAAGTATTGACACTACAG+CGG | 0.629318 | 8.3:+36872025 | MS.gene71239:CDS |
| AGATAAGATCGACCTTCTTG+AGG | 0.633851 | 8.3:-36863613 | None:intergenic |
| TTGTACAACTGGAAGCCCAA+GGG | 0.635369 | 8.3:-36871825 | None:intergenic |
| GTTGATGACTAATAGTAATG+GGG | 0.637161 | 8.3:+36864277 | MS.gene71239:CDS |
| GGAAATGAACAGGATACTCA+GGG | 0.637226 | 8.3:+36872504 | MS.gene71239:CDS |
| AAGAGAGTGAACAAAATTTG+GGG | 0.638223 | 8.3:-36872281 | None:intergenic |
| CCCTTGGCAATACCAAATGG+AGG | 0.638786 | 8.3:+36868146 | MS.gene71239:CDS |
| ACAGATAAAGATGGAGACTG+AGG | 0.643788 | 8.3:+36864010 | MS.gene71239:CDS |
| TAACTTGTCCACACCACCAG+TGG | 0.644335 | 8.3:-36868972 | None:intergenic |
| AGGGTGAACAAAAGTGTACT+CGG | 0.647067 | 8.3:+36868166 | MS.gene71239:CDS |
| AGGCATACTTGAGTTTGCAG+AGG | 0.652217 | 8.3:+36868889 | MS.gene71239:CDS |
| ACAGGCCTCTTGAAGGAAAG+CGG | 0.655733 | 8.3:+36869056 | MS.gene71239:CDS |
| GAACCAACATTGGCATGTAG+GGG | 0.657717 | 8.3:-36867583 | None:intergenic |
| TGCAGCACTTGGTAGGGACA+AGG | 0.658489 | 8.3:+36869648 | MS.gene71239:CDS |
| GAGGCTTAAGGAGCGTTGTG+CGG | 0.659755 | 8.3:+36871448 | MS.gene71239:CDS |
| CTCCTCGTTCCGGTAAAGGG+GGG | 0.659993 | 8.3:-36873150 | None:intergenic |
| TGCGACCCTATGATACAGAA+GGG | 0.660790 | 8.3:+36867145 | MS.gene71239:CDS |
| TTCCACCGAATAACTGGACA+GGG | 0.660914 | 8.3:+36867603 | MS.gene71239:CDS |
| CCTCGAAAATCAAGATTGTG+AGG | 0.661093 | 8.3:-36868812 | None:intergenic |
| ACTACAGCGGGAGACTGACA+AGG | 0.666691 | 8.3:+36872038 | MS.gene71239:CDS |
| CCTTGGCAATACCAAATGGA+GGG | 0.668903 | 8.3:+36868147 | MS.gene71239:CDS |
| TTGCAGAGGGACGTCCTCTG+GGG | 0.669672 | 8.3:+36868903 | MS.gene71239:CDS |
| ATTGAGAAGCCCCAATCCCG+AGG | 0.674430 | 8.3:+36869141 | MS.gene71239:CDS |
| GATCAAATATGGGCTAATGG+AGG | 0.675104 | 8.3:+36868196 | MS.gene71239:CDS |
| CCCGAGACCAGATCAAAAGG+AGG | 0.677771 | 8.3:+36871429 | MS.gene71239:CDS |
| GGCCTCTTGAAGGAAAGCGG+TGG | 0.677977 | 8.3:+36869059 | MS.gene71239:CDS |
| TGTACAACTGGAAGCCCAAG+GGG | 0.678513 | 8.3:-36871824 | None:intergenic |
| ATAACAGCCATCATATCAGG+AGG | 0.678757 | 8.3:-36864230 | None:intergenic |
| GGTCGAGTAGCATTTACTGA+GGG | 0.680031 | 8.3:+36869004 | MS.gene71239:CDS |
| TTGGCTAGGTGATTGTGCAA+AGG | 0.687857 | 8.3:+36871647 | MS.gene71239:CDS |
| AGAAGAAGCAACAAGCTTTG+GGG | 0.689200 | 8.3:+36866727 | MS.gene71239:CDS |
| TTTACATCAGAAAACAAACT+GGG | 0.692758 | 8.3:+36863732 | MS.gene71239:CDS |
| AGAGAGTGAACAAAATTTGG+GGG | 0.694041 | 8.3:-36872280 | None:intergenic |
| GTAGGATATACCGATTCATG+GGG | 0.696659 | 8.3:+36866550 | MS.gene71239:CDS |
| TTCAGCAGCAACACTACCGT+AGG | 0.704024 | 8.3:-36863823 | None:intergenic |
| TGGTCGAGTAGCATTTACTG+AGG | 0.706453 | 8.3:+36869003 | MS.gene71239:CDS |
| TCTAAAGCTTCCCCTCCCAG+AGG | 0.724335 | 8.3:+36868538 | MS.gene71239:intron |
| AATCGAAAATATCATCCAGG+TGG | 0.724477 | 8.3:-36869027 | None:intergenic |
| CTATGGAGTGACTTACATCG+GGG | 0.740334 | 8.3:+36871406 | MS.gene71239:CDS |
| TTTGTAAGGATACTAAGACG+AGG | 0.751823 | 8.3:+36864177 | MS.gene71239:CDS |
| AAAGCAGACAGTGATGACGT+CGG | 0.756304 | 8.3:+36871382 | MS.gene71239:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 36863585 | 36873219 | 36863585 | ID=MS.gene71239 |
| chr8.3 | mRNA | 36863585 | 36873219 | 36863585 | ID=MS.gene71239.t1;Parent=MS.gene71239 |
| chr8.3 | exon | 36863585 | 36864358 | 36863585 | ID=MS.gene71239.t1.exon1;Parent=MS.gene71239.t1 |
| chr8.3 | CDS | 36863585 | 36864358 | 36863585 | ID=cds.MS.gene71239.t1;Parent=MS.gene71239.t1 |
| chr8.3 | exon | 36866549 | 36866803 | 36866549 | ID=MS.gene71239.t1.exon2;Parent=MS.gene71239.t1 |
| chr8.3 | CDS | 36866549 | 36866803 | 36866549 | ID=cds.MS.gene71239.t1;Parent=MS.gene71239.t1 |
| chr8.3 | exon | 36866885 | 36867018 | 36866885 | ID=MS.gene71239.t1.exon3;Parent=MS.gene71239.t1 |
| chr8.3 | CDS | 36866885 | 36867018 | 36866885 | ID=cds.MS.gene71239.t1;Parent=MS.gene71239.t1 |
| chr8.3 | exon | 36867114 | 36867180 | 36867114 | ID=MS.gene71239.t1.exon4;Parent=MS.gene71239.t1 |
| chr8.3 | CDS | 36867114 | 36867180 | 36867114 | ID=cds.MS.gene71239.t1;Parent=MS.gene71239.t1 |
| chr8.3 | exon | 36867566 | 36867624 | 36867566 | ID=MS.gene71239.t1.exon5;Parent=MS.gene71239.t1 |
| chr8.3 | CDS | 36867566 | 36867624 | 36867566 | ID=cds.MS.gene71239.t1;Parent=MS.gene71239.t1 |
| chr8.3 | exon | 36867922 | 36868039 | 36867922 | ID=MS.gene71239.t1.exon6;Parent=MS.gene71239.t1 |
| chr8.3 | CDS | 36867922 | 36868039 | 36867922 | ID=cds.MS.gene71239.t1;Parent=MS.gene71239.t1 |
| chr8.3 | exon | 36868136 | 36868249 | 36868136 | ID=MS.gene71239.t1.exon7;Parent=MS.gene71239.t1 |
| chr8.3 | CDS | 36868136 | 36868249 | 36868136 | ID=cds.MS.gene71239.t1;Parent=MS.gene71239.t1 |
| chr8.3 | exon | 36868545 | 36868676 | 36868545 | ID=MS.gene71239.t1.exon8;Parent=MS.gene71239.t1 |
| chr8.3 | CDS | 36868545 | 36868676 | 36868545 | ID=cds.MS.gene71239.t1;Parent=MS.gene71239.t1 |
| chr8.3 | exon | 36868773 | 36869192 | 36868773 | ID=MS.gene71239.t1.exon9;Parent=MS.gene71239.t1 |
| chr8.3 | CDS | 36868773 | 36869192 | 36868773 | ID=cds.MS.gene71239.t1;Parent=MS.gene71239.t1 |
| chr8.3 | exon | 36869619 | 36869669 | 36869619 | ID=MS.gene71239.t1.exon10;Parent=MS.gene71239.t1 |
| chr8.3 | CDS | 36869619 | 36869669 | 36869619 | ID=cds.MS.gene71239.t1;Parent=MS.gene71239.t1 |
| chr8.3 | exon | 36870172 | 36870242 | 36870172 | ID=MS.gene71239.t1.exon11;Parent=MS.gene71239.t1 |
| chr8.3 | CDS | 36870172 | 36870242 | 36870172 | ID=cds.MS.gene71239.t1;Parent=MS.gene71239.t1 |
| chr8.3 | exon | 36871025 | 36871109 | 36871025 | ID=MS.gene71239.t1.exon12;Parent=MS.gene71239.t1 |
| chr8.3 | CDS | 36871025 | 36871109 | 36871025 | ID=cds.MS.gene71239.t1;Parent=MS.gene71239.t1 |
| chr8.3 | exon | 36871365 | 36871517 | 36871365 | ID=MS.gene71239.t1.exon13;Parent=MS.gene71239.t1 |
| chr8.3 | CDS | 36871365 | 36871517 | 36871365 | ID=cds.MS.gene71239.t1;Parent=MS.gene71239.t1 |
| chr8.3 | exon | 36871594 | 36871668 | 36871594 | ID=MS.gene71239.t1.exon14;Parent=MS.gene71239.t1 |
| chr8.3 | CDS | 36871594 | 36871668 | 36871594 | ID=cds.MS.gene71239.t1;Parent=MS.gene71239.t1 |
| chr8.3 | exon | 36871785 | 36871874 | 36871785 | ID=MS.gene71239.t1.exon15;Parent=MS.gene71239.t1 |
| chr8.3 | CDS | 36871785 | 36871874 | 36871785 | ID=cds.MS.gene71239.t1;Parent=MS.gene71239.t1 |
| chr8.3 | exon | 36872012 | 36872059 | 36872012 | ID=MS.gene71239.t1.exon16;Parent=MS.gene71239.t1 |
| chr8.3 | CDS | 36872012 | 36872059 | 36872012 | ID=cds.MS.gene71239.t1;Parent=MS.gene71239.t1 |
| chr8.3 | exon | 36872250 | 36872364 | 36872250 | ID=MS.gene71239.t1.exon17;Parent=MS.gene71239.t1 |
| chr8.3 | CDS | 36872250 | 36872364 | 36872250 | ID=cds.MS.gene71239.t1;Parent=MS.gene71239.t1 |
| chr8.3 | exon | 36872464 | 36872567 | 36872464 | ID=MS.gene71239.t1.exon18;Parent=MS.gene71239.t1 |
| chr8.3 | CDS | 36872464 | 36872567 | 36872464 | ID=cds.MS.gene71239.t1;Parent=MS.gene71239.t1 |
| chr8.3 | exon | 36873109 | 36873219 | 36873109 | ID=MS.gene71239.t1.exon19;Parent=MS.gene71239.t1 |
| chr8.3 | CDS | 36873109 | 36873219 | 36873109 | ID=cds.MS.gene71239.t1;Parent=MS.gene71239.t1 |
| Gene Sequence |
| Protein sequence |
