Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71722.t1 | XP_003592554.2 | 97.3 | 560 | 15 | 0 | 1 | 560 | 1 | 560 | 4.50E-304 | 1053.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71722.t1 | G7IAT4 | 97.3 | 560 | 15 | 0 | 1 | 560 | 1 | 560 | 3.2e-304 | 1053.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049182 | MS.gene71722 | 0.810137 | 1.34E-50 | -1.69E-46 |
| MS.gene050379 | MS.gene71722 | 0.817123 | 3.88E-52 | -1.69E-46 |
| MS.gene051637 | MS.gene71722 | 0.825828 | 3.79E-54 | -1.69E-46 |
| MS.gene051959 | MS.gene71722 | 0.833589 | 4.89E-56 | -1.69E-46 |
| MS.gene051960 | MS.gene71722 | 0.840584 | 7.96E-58 | -1.69E-46 |
| MS.gene054892 | MS.gene71722 | 0.821405 | 4.11E-53 | -1.69E-46 |
| MS.gene054893 | MS.gene71722 | 0.821923 | 3.12E-53 | -1.69E-46 |
| MS.gene05624 | MS.gene71722 | 0.803145 | 4.01E-49 | -1.69E-46 |
| MS.gene057148 | MS.gene71722 | -0.818225 | 2.19E-52 | -1.69E-46 |
| MS.gene058592 | MS.gene71722 | 0.810817 | 9.55E-51 | -1.69E-46 |
| MS.gene05985 | MS.gene71722 | -0.818449 | 1.95E-52 | -1.69E-46 |
| MS.gene060244 | MS.gene71722 | 0.805832 | 1.10E-49 | -1.69E-46 |
| MS.gene060522 | MS.gene71722 | 0.837297 | 5.65E-57 | -1.69E-46 |
| MS.gene060964 | MS.gene71722 | 0.813594 | 2.36E-51 | -1.69E-46 |
| MS.gene061100 | MS.gene71722 | 0.803071 | 4.15E-49 | -1.69E-46 |
| MS.gene061188 | MS.gene71722 | 0.808128 | 3.61E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71722.t1 | MTR_1g108460 | 98.750 | 560 | 7 | 0 | 1 | 560 | 1 | 560 | 0.0 | 1138 |
| MS.gene71722.t1 | MTR_1g108460 | 99.289 | 422 | 3 | 0 | 1 | 422 | 1 | 422 | 0.0 | 862 |
| MS.gene71722.t1 | MTR_2g450550 | 46.567 | 466 | 246 | 3 | 66 | 529 | 57 | 521 | 1.05e-138 | 412 |
| MS.gene71722.t1 | MTR_3g106510 | 42.191 | 493 | 281 | 4 | 62 | 552 | 53 | 543 | 1.18e-132 | 399 |
| MS.gene71722.t1 | MTR_2g450550 | 46.995 | 366 | 192 | 2 | 165 | 529 | 52 | 416 | 6.72e-118 | 355 |
| MS.gene71722.t1 | MTR_4g116290 | 36.680 | 488 | 296 | 5 | 38 | 522 | 9 | 486 | 2.36e-104 | 323 |
| MS.gene71722.t1 | MTR_2g450550 | 44.568 | 359 | 197 | 2 | 66 | 422 | 57 | 415 | 1.06e-92 | 292 |
| MS.gene71722.t1 | MTR_2g099140 | 26.871 | 521 | 321 | 16 | 55 | 544 | 20 | 511 | 1.04e-39 | 152 |
| MS.gene71722.t1 | MTR_2g099140 | 26.747 | 501 | 310 | 14 | 72 | 544 | 54 | 525 | 2.33e-38 | 148 |
| MS.gene71722.t1 | MTR_5g015390 | 20.479 | 459 | 311 | 12 | 79 | 522 | 42 | 461 | 2.52e-14 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71722.t1 | AT1G71110 | 60.000 | 530 | 198 | 6 | 9 | 529 | 1 | 525 | 0.0 | 647 |
| MS.gene71722.t1 | AT2G12400 | 42.917 | 480 | 271 | 3 | 52 | 529 | 46 | 524 | 4.20e-131 | 394 |
| MS.gene71722.t1 | AT2G25270 | 38.104 | 538 | 320 | 5 | 14 | 538 | 3 | 540 | 4.47e-129 | 388 |
| MS.gene71722.t1 | AT1G80540 | 36.344 | 465 | 287 | 6 | 71 | 527 | 18 | 481 | 3.84e-95 | 299 |
| MS.gene71722.t1 | AT1G80540 | 36.344 | 465 | 287 | 6 | 71 | 527 | 64 | 527 | 9.43e-95 | 300 |
| MS.gene71722.t1 | AT1G80540 | 35.121 | 373 | 238 | 4 | 159 | 527 | 2 | 374 | 6.31e-73 | 238 |
| MS.gene71722.t1 | AT5G67550 | 21.622 | 481 | 336 | 14 | 76 | 534 | 35 | 496 | 4.52e-22 | 100 |
Find 124 sgRNAs with CRISPR-Local
Find 309 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTATCTGGTTGACGTTTA+TGG | 0.177193 | 1.1:-77533115 | None:intergenic |
| TTCTGCTTTGCCTTGTTCTA+TGG | 0.194171 | 1.1:+77535115 | MS.gene71722:CDS |
| CACAAACACTTCTCCCCTTT+GGG | 0.225734 | 1.1:-77535157 | None:intergenic |
| GTTTCATTCTTGCCGTCTTA+TGG | 0.256105 | 1.1:+77532382 | MS.gene71722:CDS |
| GTTGACAATATTTGCAATAT+TGG | 0.267190 | 1.1:-77534111 | None:intergenic |
| ATATTTCAGATCGGCATTAT+TGG | 0.275242 | 1.1:+77531560 | MS.gene71722:CDS |
| CTCTTATTCTGGCGGCAAAT+AGG | 0.276223 | 1.1:+77531485 | MS.gene71722:CDS |
| GTCTTATGGTTTGTCTCATT+TGG | 0.281337 | 1.1:+77532396 | MS.gene71722:CDS |
| GTCCTACATTAATGATATTA+AGG | 0.293341 | 1.1:-77535071 | None:intergenic |
| TGTTATCACTGGATGGTTAC+TGG | 0.300691 | 1.1:+77533648 | MS.gene71722:CDS |
| ATATTAAGGTAATGCTTTAA+TGG | 0.308224 | 1.1:-77535057 | None:intergenic |
| AATTCAGCTTTATCTTCAAC+TGG | 0.310962 | 1.1:+77531129 | MS.gene71722:CDS |
| TATTTCAGATCGGCATTATT+GGG | 0.318265 | 1.1:+77531561 | MS.gene71722:CDS |
| AGGTGATAATACTCTTATTC+TGG | 0.339822 | 1.1:+77531474 | MS.gene71722:CDS |
| TCACAAACACTTCTCCCCTT+TGG | 0.370346 | 1.1:-77535158 | None:intergenic |
| GCGCACGGCCTTGTTTGTTA+TGG | 0.371299 | 1.1:+77533344 | MS.gene71722:CDS |
| TCACCTAGTGGCCCTGGTGC+TGG | 0.373820 | 1.1:-77531457 | None:intergenic |
| TTCTGATACTTGCATGGCTA+TGG | 0.374645 | 1.1:+77533980 | MS.gene71722:CDS |
| CTCTTGGCTCTAACTGGACT+AGG | 0.381640 | 1.1:+77533381 | MS.gene71722:CDS |
| CACCACATCAAGTTTATCAT+AGG | 0.382134 | 1.1:+77531162 | MS.gene71722:CDS |
| ATGAAGGCTCATTCCTTCAA+TGG | 0.388869 | 1.1:+77531057 | MS.gene71722:CDS |
| GGATGTATTCTCCTTTCTGT+TGG | 0.395056 | 1.1:+77532979 | MS.gene71722:CDS |
| GCTAACTGCAAGTAAATCTC+TGG | 0.399430 | 1.1:-77534919 | None:intergenic |
| ATGGTTTGTCTCATTTGGCT+TGG | 0.401760 | 1.1:+77532401 | MS.gene71722:CDS |
| TAGACTTCACTGCCTGCATT+TGG | 0.410089 | 1.1:-77535249 | None:intergenic |
| TCGAAGAAAATCAGGTCTAT+TGG | 0.415895 | 1.1:-77531509 | None:intergenic |
| TGAAATCCTCGAAGAAAATC+AGG | 0.422490 | 1.1:-77531517 | None:intergenic |
| CATCAGATGGAAGAAGTATC+TGG | 0.429382 | 1.1:-77533128 | None:intergenic |
| TAAGTTTCACGGCGAGGCCT+TGG | 0.429494 | 1.1:+77533008 | MS.gene71722:CDS |
| TTCATCTGCCAATGCTTCAA+TGG | 0.432553 | 1.1:+77534274 | MS.gene71722:CDS |
| TATTCTCCTTTCTGTTGGGC+AGG | 0.443697 | 1.1:+77532984 | MS.gene71722:CDS |
| GATGTATTCTCCTTTCTGTT+GGG | 0.445649 | 1.1:+77532980 | MS.gene71722:CDS |
| GGATAGCATAGTGGCGGCAT+TGG | 0.448863 | 1.1:-77534206 | None:intergenic |
| TGAAGGCTCATTCCTTCAAT+GGG | 0.450995 | 1.1:+77531058 | MS.gene71722:CDS |
| ACGGCCTTGTTTGTTATGGC+AGG | 0.454318 | 1.1:+77533348 | MS.gene71722:CDS |
| TTCATCGTTATCACGGTGGT+TGG | 0.455519 | 1.1:+77531536 | MS.gene71722:CDS |
| GCAATGCTAAATTTGTGCTC+TGG | 0.457671 | 1.1:-77535227 | None:intergenic |
| ACTTCTTCCATCTGATGTCC+TGG | 0.459835 | 1.1:+77533134 | MS.gene71722:CDS |
| GGAGGAAGAGGAGTGAATAT+AGG | 0.462519 | 1.1:+77531403 | MS.gene71722:intron |
| TGATTCATCTATGCTGTGGA+TGG | 0.465197 | 1.1:+77532430 | MS.gene71722:CDS |
| GCAACCACATTCATTCTTTG+CGG | 0.465286 | 1.1:+77533673 | MS.gene71722:CDS |
| TCGGCAGTCCTGTCTCTCCT+TGG | 0.466551 | 1.1:+77533497 | MS.gene71722:intron |
| GTATGCGAGGTATCTGAATC+AGG | 0.466931 | 1.1:+77534868 | MS.gene71722:CDS |
| TCATCGTTATCACGGTGGTT+GGG | 0.467508 | 1.1:+77531537 | MS.gene71722:CDS |
| TTCTCGAAATTGATTGTCAA+AGG | 0.468444 | 1.1:-77534228 | None:intergenic |
| GAGGAGTGAATATAGGTTCA+TGG | 0.470463 | 1.1:+77531410 | MS.gene71722:CDS |
| CTTGCATGGCTATGGGAGAA+TGG | 0.470490 | 1.1:+77533988 | MS.gene71722:CDS |
| ACACAAGTGGCTCCAGCACC+AGG | 0.470901 | 1.1:+77531445 | MS.gene71722:CDS |
| ACAAATCCTTTGTGAACGAT+TGG | 0.470926 | 1.1:-77532478 | None:intergenic |
| TTTGTCAGGGATGCATTCAC+AGG | 0.471664 | 1.1:+77535012 | MS.gene71722:CDS |
| AAACTTCTTGATTTGTACAT+TGG | 0.474575 | 1.1:-77534253 | None:intergenic |
| GTTGATATCCAAGGAGAGAC+AGG | 0.479405 | 1.1:-77533505 | None:intergenic |
| CTGTTATATTTGCAGTCAGT+TGG | 0.479934 | 1.1:+77532342 | MS.gene71722:intron |
| AAATAATACCATTGAAGCAT+TGG | 0.484010 | 1.1:-77534282 | None:intergenic |
| TTGCAGTCAGTTGGATTCAC+CGG | 0.485005 | 1.1:+77532351 | MS.gene71722:intron |
| TAGCATAGTGGCGGCATTGG+AGG | 0.485779 | 1.1:-77534203 | None:intergenic |
| GTATTTGCACTACAGTTGGC+AGG | 0.490378 | 1.1:+77534890 | MS.gene71722:CDS |
| GGACTTGGCCTCATTTCAGT+TGG | 0.492225 | 1.1:+77535090 | MS.gene71722:CDS |
| GTTGGATTCACCGGTGCCAC+GGG | 0.493182 | 1.1:+77532360 | MS.gene71722:CDS |
| TTGCATGGCTATGGGAGAAT+GGG | 0.496761 | 1.1:+77533989 | MS.gene71722:CDS |
| ATTCATCTATGCTGTGGATG+GGG | 0.500948 | 1.1:+77532432 | MS.gene71722:CDS |
| AAGAATGAAACCCGTGGCAC+CGG | 0.505503 | 1.1:-77532370 | None:intergenic |
| GTTGGGCAGGATAAGTTTCA+CGG | 0.506973 | 1.1:+77532997 | MS.gene71722:CDS |
| AGTTGGATTCACCGGTGCCA+CGG | 0.507428 | 1.1:+77532359 | MS.gene71722:CDS |
| TACCTTAATATCATTAATGT+AGG | 0.508015 | 1.1:+77535069 | MS.gene71722:CDS |
| GTATTATCACCTAGTGGCCC+TGG | 0.510784 | 1.1:-77531463 | None:intergenic |
| TCTGATACTTGCATGGCTAT+GGG | 0.511515 | 1.1:+77533981 | MS.gene71722:CDS |
| TACAATTTCTGATACTTGCA+TGG | 0.513443 | 1.1:+77533974 | MS.gene71722:CDS |
| ATGCTAAATTTGTGCTCTGG+TGG | 0.516026 | 1.1:-77535224 | None:intergenic |
| TTCTGAAGGCTAAGTAAAAG+TGG | 0.518057 | 1.1:-77534982 | None:intergenic |
| AATTTAGCATTGCCAAATGC+AGG | 0.518871 | 1.1:+77535237 | MS.gene71722:CDS |
| AATATCATTAATGTAGGACT+TGG | 0.522457 | 1.1:+77535075 | MS.gene71722:CDS |
| GCTCCAGCACCAGGGCCACT+AGG | 0.526747 | 1.1:+77531454 | MS.gene71722:CDS |
| TCTCGAAATTGATTGTCAAA+GGG | 0.529864 | 1.1:-77534227 | None:intergenic |
| GCAGATTTGTTATCACTGGA+TGG | 0.536855 | 1.1:+77533641 | MS.gene71722:intron |
| TCAGGTATTTGCACTACAGT+TGG | 0.539896 | 1.1:+77534886 | MS.gene71722:CDS |
| CTAACTGCAAGTAAATCTCT+GGG | 0.545916 | 1.1:-77534918 | None:intergenic |
| ACTTATCCTGCCCAACAGAA+AGG | 0.546266 | 1.1:-77532990 | None:intergenic |
| CTTCCATCTGATGTCCTGGA+TGG | 0.547833 | 1.1:+77533138 | MS.gene71722:CDS |
| GATTCATCTATGCTGTGGAT+GGG | 0.549596 | 1.1:+77532431 | MS.gene71722:CDS |
| ACAAACACTTCTCCCCTTTG+GGG | 0.558946 | 1.1:-77535156 | None:intergenic |
| GCAAACGTAAATGCAACAAA+GGG | 0.559605 | 1.1:+77534152 | MS.gene71722:CDS |
| AATGCAACAAAGGGTCATCC+AGG | 0.560684 | 1.1:+77534161 | MS.gene71722:CDS |
| TTCATCTATGCTGTGGATGG+GGG | 0.565637 | 1.1:+77532433 | MS.gene71722:CDS |
| TGCAAACGTAAATGCAACAA+AGG | 0.571083 | 1.1:+77534151 | MS.gene71722:CDS |
| ATACCATCCAGGACATCAGA+TGG | 0.573820 | 1.1:-77533141 | None:intergenic |
| CGAGGATTTCATCGTTATCA+CGG | 0.574421 | 1.1:+77531529 | MS.gene71722:CDS |
| TGACAAAATTGCAATTCTGA+AGG | 0.579139 | 1.1:-77534996 | None:intergenic |
| CATGGCTATGGGAGAATGGG+TGG | 0.581284 | 1.1:+77533992 | MS.gene71722:CDS |
| GCAGAACACCAACTGAAATG+AGG | 0.592050 | 1.1:-77535098 | None:intergenic |
| TTCTTTGATCAACGCATGGA+AGG | 0.594653 | 1.1:-77534049 | None:intergenic |
| TGGTATTGATAAGTTGAATG+TGG | 0.597976 | 1.1:+77533158 | MS.gene71722:CDS |
| AAAGTCTTACGATGCAGCAA+AGG | 0.601124 | 1.1:-77532523 | None:intergenic |
| CTTGTGATTCATCTATGCTG+TGG | 0.603282 | 1.1:+77532426 | MS.gene71722:CDS |
| TCAACTTATCAATACCATCC+AGG | 0.603553 | 1.1:-77533152 | None:intergenic |
| ATTCAGCTTTATCTTCAACT+GGG | 0.608828 | 1.1:+77531130 | MS.gene71722:CDS |
| TATTTGCACTACAGTTGGCA+GGG | 0.613241 | 1.1:+77534891 | MS.gene71722:CDS |
| TTAAGGTAATGCTTTAATGG+AGG | 0.616479 | 1.1:-77535054 | None:intergenic |
| GCAAAATGAAGTTACACAAG+TGG | 0.620200 | 1.1:+77531432 | MS.gene71722:CDS |
| CATAGAGTATCCATAGAACA+AGG | 0.621481 | 1.1:-77535125 | None:intergenic |
| TTGTCAAAGGGATAGCATAG+TGG | 0.622154 | 1.1:-77534215 | None:intergenic |
| TTGGGAGAATTATGTATGCG+AGG | 0.624037 | 1.1:+77534855 | MS.gene71722:CDS |
| TGATAATACTCTTATTCTGG+CGG | 0.626823 | 1.1:+77531477 | MS.gene71722:CDS |
| GGGATTAACATAAAGGACAA+AGG | 0.636198 | 1.1:+77532453 | MS.gene71722:CDS |
| AACCTATGATAAACTTGATG+TGG | 0.636454 | 1.1:-77531164 | None:intergenic |
| CAAACACTTCTCCCCTTTGG+GGG | 0.639045 | 1.1:-77535155 | None:intergenic |
| TACTCCTGCCATAACAAACA+AGG | 0.640964 | 1.1:-77533352 | None:intergenic |
| GTGGTTCTTTGATCAACGCA+TGG | 0.641600 | 1.1:-77534053 | None:intergenic |
| TGATTGCATGTTGATATCCA+AGG | 0.647031 | 1.1:-77533514 | None:intergenic |
| AAATGAGACAAACCATAAGA+CGG | 0.652641 | 1.1:-77532394 | None:intergenic |
| GTGGTTGGGATATTTCAGAT+CGG | 0.653513 | 1.1:+77531551 | MS.gene71722:CDS |
| GCAGACTCTGAGAAATGTCA+CGG | 0.656398 | 1.1:+77533071 | MS.gene71722:CDS |
| TGTGGAACTAAATACTGCAG+CGG | 0.659585 | 1.1:+77533176 | MS.gene71722:CDS |
| CTAAGAGCAGATTCTCTGTG+TGG | 0.660144 | 1.1:-77534020 | None:intergenic |
| GCAGGATAAGTTTCACGGCG+AGG | 0.664395 | 1.1:+77533002 | MS.gene71722:CDS |
| TATTGCAAATATTGTCAACA+CGG | 0.666087 | 1.1:+77534115 | MS.gene71722:CDS |
| TCAAAGGGATAGCATAGTGG+CGG | 0.668642 | 1.1:-77534212 | None:intergenic |
| CACAAGTGGCTCCAGCACCA+GGG | 0.678997 | 1.1:+77531446 | MS.gene71722:CDS |
| AAGGATCCAATCGTTCACAA+AGG | 0.682188 | 1.1:+77532472 | MS.gene71722:CDS |
| ATAAGAGTATTATCACCTAG+TGG | 0.683571 | 1.1:-77531469 | None:intergenic |
| GGATTTCATCGTTATCACGG+TGG | 0.704106 | 1.1:+77531532 | MS.gene71722:CDS |
| CACTCCGCAAAGAATGAATG+TGG | 0.705480 | 1.1:-77533677 | None:intergenic |
| GACGGCAAGAATGAAACCCG+TGG | 0.726515 | 1.1:-77532376 | None:intergenic |
| TAACTGCAAGTAAATCTCTG+GGG | 0.763572 | 1.1:-77534917 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCAAAATTTAAAGATAAT+TGG | - | chr1.1:77533883-77533902 | None:intergenic | 10.0% |
| !!! | CCTTTTAATTATTTTATTTT+CGG | + | chr1.1:77533478-77533497 | MS.gene71722:intron | 10.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr1.1:77532643-77532662 | None:intergenic | 100.0% |
| !! | AAGCTTGATATATAAAATTA+AGG | - | chr1.1:77534313-77534332 | None:intergenic | 15.0% |
| !! | AGCTTGATATATAAAATTAA+GGG | - | chr1.1:77534312-77534331 | None:intergenic | 15.0% |
| !! | AGTAAAAAAAATATCAACAT+AGG | + | chr1.1:77534728-77534747 | MS.gene71722:intron | 15.0% |
| !! | ATATTGGATTTATATGTTAT+AGG | + | chr1.1:77531808-77531827 | MS.gene71722:intron | 15.0% |
| !! | CCGAAAATAAAATAATTAAA+AGG | - | chr1.1:77533481-77533500 | None:intergenic | 15.0% |
| !! | GTAAAAAAAATATCAACATA+GGG | + | chr1.1:77534729-77534748 | MS.gene71722:intron | 15.0% |
| !!! | ACTTTTTTTGCTTATATTTA+AGG | - | chr1.1:77532004-77532023 | None:intergenic | 15.0% |
| !!! | GAATAATCTTCTAATTTTAA+CGG | - | chr1.1:77533232-77533251 | None:intergenic | 15.0% |
| !!! | TCATTTTGTTTAAATTTTTC+AGG | + | chr1.1:77534831-77534850 | MS.gene71722:intron | 15.0% |
| !!! | TTTAGATCTTTTAAATCTTA+GGG | + | chr1.1:77531237-77531256 | MS.gene71722:intron | 15.0% |
| !!! | TTTTGAATTTTTTGTCTTTA+TGG | + | chr1.1:77533895-77533914 | MS.gene71722:intron | 15.0% |
| !! | AAACATTGAATTGAAGTAAA+AGG | - | chr1.1:77533808-77533827 | None:intergenic | 20.0% |
| !! | AACATTGAATTGAAGTAAAA+GGG | - | chr1.1:77533807-77533826 | None:intergenic | 20.0% |
| !! | AGAATTAATTTATTCGTATC+AGG | - | chr1.1:77533947-77533966 | None:intergenic | 20.0% |
| !! | ATATTAAGGTAATGCTTTAA+TGG | - | chr1.1:77535060-77535079 | None:intergenic | 20.0% |
| !! | ATATTGTTGGATTATTATTC+GGG | + | chr1.1:77531346-77531365 | MS.gene71722:intron | 20.0% |
| !! | GATATTGTTGGATTATTATT+CGG | + | chr1.1:77531345-77531364 | MS.gene71722:intron | 20.0% |
| !! | GTATTTAGTCCAAATATTTA+AGG | + | chr1.1:77532028-77532047 | MS.gene71722:intron | 20.0% |
| !! | TACCTTAATATCATTAATGT+AGG | + | chr1.1:77535069-77535088 | MS.gene71722:CDS | 20.0% |
| !! | TGTAATTTATAATGAGTGAT+TGG | + | chr1.1:77534433-77534452 | MS.gene71722:intron | 20.0% |
| !! | TTCAAGAACAAAAATAAAGA+AGG | - | chr1.1:77532239-77532258 | None:intergenic | 20.0% |
| !!! | CTTTTTTGCTTATATTTTCA+AGG | - | chr1.1:77532131-77532150 | None:intergenic | 20.0% |
| !!! | GCTCTTTATTTTTTCTTTTA+AGG | - | chr1.1:77535190-77535209 | None:intergenic | 20.0% |
| !!! | GTTTAGATCTTTTAAATCTT+AGG | + | chr1.1:77531236-77531255 | MS.gene71722:intron | 20.0% |
| !!! | TAATCTCTAAATTTTGTTCA+TGG | + | chr1.1:77534769-77534788 | MS.gene71722:intron | 20.0% |
| !!! | TGTTTAAATTTTTCAGGTTT+GGG | + | chr1.1:77534837-77534856 | MS.gene71722:intron | 20.0% |
| !!! | TTGTTTAAATTTTTCAGGTT+TGG | + | chr1.1:77534836-77534855 | MS.gene71722:intron | 20.0% |
| !!! | TTTTGTCTTTATGGTAAAAA+AGG | + | chr1.1:77533904-77533923 | MS.gene71722:intron | 20.0% |
| ! | AAATAATACCATTGAAGCAT+TGG | - | chr1.1:77534285-77534304 | None:intergenic | 25.0% |
| ! | AAATATCAACATAGGGAAAT+TGG | + | chr1.1:77534736-77534755 | MS.gene71722:intron | 25.0% |
| ! | AATATCATTAATGTAGGACT+TGG | + | chr1.1:77535075-77535094 | MS.gene71722:CDS | 25.0% |
| ! | AATTGAAGTAAAAGGGTAAA+TGG | - | chr1.1:77533800-77533819 | None:intergenic | 25.0% |
| ! | ACAAAATATGCAGAATTTAG+AGG | - | chr1.1:77533285-77533304 | None:intergenic | 25.0% |
| ! | ATGTTATAGGAAATGTGATA+TGG | + | chr1.1:77531821-77531840 | MS.gene71722:intron | 25.0% |
| ! | ATTGATTGACAAAAAAATGG+AGG | - | chr1.1:77533038-77533057 | None:intergenic | 25.0% |
| ! | CAATATCATAGAGAAATGAA+AGG | - | chr1.1:77531332-77531351 | None:intergenic | 25.0% |
| ! | CTGAAATCTGTTAGATATAA+TGG | - | chr1.1:77533729-77533748 | None:intergenic | 25.0% |
| ! | CTGATTGATTGACAAAAAAA+TGG | - | chr1.1:77533041-77533060 | None:intergenic | 25.0% |
| ! | GTATTTAGTCCAAGTATTTA+AGG | + | chr1.1:77532156-77532175 | MS.gene71722:intron | 25.0% |
| ! | GTCCTACATTAATGATATTA+AGG | - | chr1.1:77535074-77535093 | None:intergenic | 25.0% |
| ! | GTTGACAATATTTGCAATAT+TGG | - | chr1.1:77534114-77534133 | None:intergenic | 25.0% |
| ! | TACTTGTGTGATATCTATAT+TGG | + | chr1.1:77531792-77531811 | MS.gene71722:intron | 25.0% |
| ! | TATTGCAAATATTGTCAACA+CGG | + | chr1.1:77534115-77534134 | MS.gene71722:CDS | 25.0% |
| ! | TCATTTCTCTATGATATTGT+TGG | + | chr1.1:77531333-77531352 | MS.gene71722:intron | 25.0% |
| ! | TTATATCTATGATGAAAGGA+GGG | - | chr1.1:77532666-77532685 | None:intergenic | 25.0% |
| ! | TTCGTCAGAAATATATATGT+CGG | + | chr1.1:77532920-77532939 | MS.gene71722:intron | 25.0% |
| ! | TTGATTGACAAAAAAATGGA+GGG | - | chr1.1:77533037-77533056 | None:intergenic | 25.0% |
| ! | TTTATATCTATGATGAAAGG+AGG | - | chr1.1:77532667-77532686 | None:intergenic | 25.0% |
| !! | CAGATTTTTATCTTCTTCTT+TGG | + | chr1.1:77532597-77532616 | MS.gene71722:intron | 25.0% |
| !! | CTAAATTTTGTTCATGGTTT+CGG | + | chr1.1:77534775-77534794 | MS.gene71722:intron | 25.0% |
| !! | GCTTTTATATCTATGATGAA+AGG | - | chr1.1:77532670-77532689 | None:intergenic | 25.0% |
| !! | TATTTGTGATTTTCTGTGAT+GGG | + | chr1.1:77531209-77531228 | MS.gene71722:intron | 25.0% |
| !! | TTATTTGTGATTTTCTGTGA+TGG | + | chr1.1:77531208-77531227 | MS.gene71722:intron | 25.0% |
| !!! | AAACTTCTTGATTTGTACAT+TGG | - | chr1.1:77534256-77534275 | None:intergenic | 25.0% |
| !!! | CATTTAAAACATTGACTTGT+TGG | + | chr1.1:77534594-77534613 | MS.gene71722:intron | 25.0% |
| !!! | TCATAATCATTTTTCTAGGT+TGG | + | chr1.1:77531608-77531627 | MS.gene71722:intron | 25.0% |
| !!! | TTATTTGATTCCACTTTTTC+AGG | + | chr1.1:77531382-77531401 | MS.gene71722:intron | 25.0% |
| !!! | TTCATTTCAGGTTTTGTTAT+GGG | - | chr1.1:77533839-77533858 | None:intergenic | 25.0% |
| !!! | TTGAAAAAGTGTTTTGTTTG+TGG | - | chr1.1:77534075-77534094 | None:intergenic | 25.0% |
| !!! | TTGAACTGAATTCGTTTTTT+TGG | + | chr1.1:77533764-77533783 | MS.gene71722:intron | 25.0% |
| AAAGACAGAAAAACAGAGAA+GGG | - | chr1.1:77532070-77532089 | None:intergenic | 30.0% | |
| AAATGAGACAAACCATAAGA+CGG | - | chr1.1:77532397-77532416 | None:intergenic | 30.0% | |
| AACCTATGATAAACTTGATG+TGG | - | chr1.1:77531167-77531186 | None:intergenic | 30.0% | |
| AGAAAAATGATTATGAGCAG+AGG | - | chr1.1:77531604-77531623 | None:intergenic | 30.0% | |
| AGGTGATAATACTCTTATTC+TGG | + | chr1.1:77531474-77531493 | MS.gene71722:CDS | 30.0% | |
| AGTTTAGCATCATACTATGA+TGG | - | chr1.1:77533309-77533328 | None:intergenic | 30.0% | |
| ATATATCAAGCTTTGCTAGA+TGG | + | chr1.1:77534320-77534339 | MS.gene71722:intron | 30.0% | |
| ATATTTCAGATCGGCATTAT+TGG | + | chr1.1:77531560-77531579 | MS.gene71722:CDS | 30.0% | |
| ATGTCAATTATGCAGCAATA+TGG | - | chr1.1:77531950-77531969 | None:intergenic | 30.0% | |
| GAAAATCTATTTACATGTCG+TGG | + | chr1.1:77532758-77532777 | MS.gene71722:intron | 30.0% | |
| GGATCTCAATTCAATATAAC+TGG | - | chr1.1:77533862-77533881 | None:intergenic | 30.0% | |
| TAAAGACAGAAAAACAGAGA+AGG | - | chr1.1:77532071-77532090 | None:intergenic | 30.0% | |
| TAAAGATAGAAAGACAGAGA+AGG | - | chr1.1:77532198-77532217 | None:intergenic | 30.0% | |
| TACAATTTCTGATACTTGCA+TGG | + | chr1.1:77533974-77533993 | MS.gene71722:CDS | 30.0% | |
| TATATCTATGATGAAAGGAG+GGG | - | chr1.1:77532665-77532684 | None:intergenic | 30.0% | |
| TATTTCAGATCGGCATTATT+GGG | + | chr1.1:77531561-77531580 | MS.gene71722:CDS | 30.0% | |
| TCTCGAAATTGATTGTCAAA+GGG | - | chr1.1:77534230-77534249 | None:intergenic | 30.0% | |
| TGACAAAATTGCAATTCTGA+AGG | - | chr1.1:77534999-77535018 | None:intergenic | 30.0% | |
| TGATAATACTCTTATTCTGG+CGG | + | chr1.1:77531477-77531496 | MS.gene71722:CDS | 30.0% | |
| TGTACTATACTTGGTACTAA+AGG | + | chr1.1:77534643-77534662 | MS.gene71722:intron | 30.0% | |
| TTATAGGAAATGTGATATGG+TGG | + | chr1.1:77531824-77531843 | MS.gene71722:intron | 30.0% | |
| TTCTCGAAATTGATTGTCAA+AGG | - | chr1.1:77534231-77534250 | None:intergenic | 30.0% | |
| TTCTGACGAATAAAACATTG+AGG | - | chr1.1:77532910-77532929 | None:intergenic | 30.0% | |
| TTCTGCTCAAGTTAAATTTC+TGG | + | chr1.1:77532876-77532895 | MS.gene71722:intron | 30.0% | |
| ! | AATTCAGCTTTATCTTCAAC+TGG | + | chr1.1:77531129-77531148 | MS.gene71722:CDS | 30.0% |
| ! | ATCTAATCACTCTGTTTTCA+TGG | + | chr1.1:77532695-77532714 | MS.gene71722:intron | 30.0% |
| ! | ATGGTTAGTTATCACTTATC+AGG | + | chr1.1:77532714-77532733 | MS.gene71722:intron | 30.0% |
| ! | ATTCAGCTTTATCTTCAACT+GGG | + | chr1.1:77531130-77531149 | MS.gene71722:CDS | 30.0% |
| ! | CAATATAACTGGTTCATTTC+AGG | - | chr1.1:77533851-77533870 | None:intergenic | 30.0% |
| ! | CAGCTTTTTATCTTCTACTT+TGG | + | chr1.1:77532564-77532583 | MS.gene71722:intron | 30.0% |
| ! | GTGAAAACCCATTTGAATTT+TGG | - | chr1.1:77534481-77534500 | None:intergenic | 30.0% |
| ! | TCAGAATTGCAATTTTGTCA+GGG | + | chr1.1:77534999-77535018 | MS.gene71722:CDS | 30.0% |
| ! | TCCAAATATTTAAGGCTAGA+GGG | + | chr1.1:77532036-77532055 | MS.gene71722:intron | 30.0% |
| ! | TTAAATCTTAGGGCTTTTGT+TGG | + | chr1.1:77531247-77531266 | MS.gene71722:intron | 30.0% |
| ! | TTCAGAATTGCAATTTTGTC+AGG | + | chr1.1:77534998-77535017 | MS.gene71722:CDS | 30.0% |
| ! | TTTTTACTCAGCTAACTGAT+CGG | - | chr1.1:77534716-77534735 | None:intergenic | 30.0% |
| !! | AATCATTTTTCTAGGTTGGA+TGG | + | chr1.1:77531612-77531631 | MS.gene71722:intron | 30.0% |
| !! | ATAAGAGTATTATCACCTAG+TGG | - | chr1.1:77531472-77531491 | None:intergenic | 30.0% |
| !! | CAAGTCAATGTTTTAAATGC+CGG | - | chr1.1:77534593-77534612 | None:intergenic | 30.0% |
| !! | CTGCTCATAATCATTTTTCT+AGG | + | chr1.1:77531604-77531623 | MS.gene71722:intron | 30.0% |
| !! | GGAATTTTCATCTGTTGTTT+CGG | - | chr1.1:77533211-77533230 | None:intergenic | 30.0% |
| !! | TGGTATTGATAAGTTGAATG+TGG | + | chr1.1:77533158-77533177 | MS.gene71722:CDS | 30.0% |
| !! | TTGGATTATTATTCGGGTTT+TGG | + | chr1.1:77531352-77531371 | MS.gene71722:intron | 30.0% |
| !!! | CTAAACTCTGCTTATTTTGT+AGG | + | chr1.1:77533322-77533341 | MS.gene71722:intron | 30.0% |
| !!! | GTTCATTTCAGGTTTTGTTA+TGG | - | chr1.1:77533840-77533859 | None:intergenic | 30.0% |
| !!! | TTTTGCAGATTTGTTATCAC+TGG | + | chr1.1:77533637-77533656 | MS.gene71722:intron | 30.0% |
| AAAGGATCATTCAGATAGCT+AGG | - | chr1.1:77533585-77533604 | None:intergenic | 35.0% | |
| AAGTATCTGGTTGACGTTTA+TGG | - | chr1.1:77533118-77533137 | None:intergenic | 35.0% | |
| AATTTAGCATTGCCAAATGC+AGG | + | chr1.1:77535237-77535256 | MS.gene71722:CDS | 35.0% | |
| ACAAATCCTTTGTGAACGAT+TGG | - | chr1.1:77532481-77532500 | None:intergenic | 35.0% | |
| ACAAATCTATGACATCATGC+TGG | - | chr1.1:77531686-77531705 | None:intergenic | 35.0% | |
| ACACACATACTCAAGTTTGT+TGG | - | chr1.1:77534384-77534403 | None:intergenic | 35.0% | |
| ATATCTATGATGAAAGGAGG+GGG | - | chr1.1:77532664-77532683 | None:intergenic | 35.0% | |
| CACCACATCAAGTTTATCAT+AGG | + | chr1.1:77531162-77531181 | MS.gene71722:CDS | 35.0% | |
| CCTTCAGCCAAAATTCAAAT+GGG | + | chr1.1:77534471-77534490 | MS.gene71722:intron | 35.0% | |
| CTAACTGCAAGTAAATCTCT+GGG | - | chr1.1:77534921-77534940 | None:intergenic | 35.0% | |
| CTGTTATATTTGCAGTCAGT+TGG | + | chr1.1:77532342-77532361 | MS.gene71722:intron | 35.0% | |
| GAAAAACGAAAACCCATTGA+AGG | - | chr1.1:77531073-77531092 | None:intergenic | 35.0% | |
| GATGTATTCTCCTTTCTGTT+GGG | + | chr1.1:77532980-77532999 | MS.gene71722:CDS | 35.0% | |
| GCAAAATGAAGTTACACAAG+TGG | + | chr1.1:77531432-77531451 | MS.gene71722:CDS | 35.0% | |
| GCAAACGTAAATGCAACAAA+GGG | + | chr1.1:77534152-77534171 | MS.gene71722:CDS | 35.0% | |
| GGGATTAACATAAAGGACAA+AGG | + | chr1.1:77532453-77532472 | MS.gene71722:CDS | 35.0% | |
| TAAAAGGGTAAATGGCCAAA+GGG | - | chr1.1:77533792-77533811 | None:intergenic | 35.0% | |
| TAACTGCAAGTAAATCTCTG+GGG | - | chr1.1:77534920-77534939 | None:intergenic | 35.0% | |
| TATGCAGAATTTAGAGGTCA+AGG | - | chr1.1:77533279-77533298 | None:intergenic | 35.0% | |
| TCAACTTATCAATACCATCC+AGG | - | chr1.1:77533155-77533174 | None:intergenic | 35.0% | |
| TCGAAGAAAATCAGGTCTAT+TGG | - | chr1.1:77531512-77531531 | None:intergenic | 35.0% | |
| TGAAATCCTCGAAGAAAATC+AGG | - | chr1.1:77531520-77531539 | None:intergenic | 35.0% | |
| TGATTGCATGTTGATATCCA+AGG | - | chr1.1:77533517-77533536 | None:intergenic | 35.0% | |
| TGCAAACGTAAATGCAACAA+AGG | + | chr1.1:77534151-77534170 | MS.gene71722:CDS | 35.0% | |
| TTCTCTGTGCAATGAAATCA+TGG | + | chr1.1:77531924-77531943 | MS.gene71722:intron | 35.0% | |
| TTGACTCAGTGTACTATACT+TGG | + | chr1.1:77534634-77534653 | MS.gene71722:intron | 35.0% | |
| TTTCCATGACTGAATTGCAA+AGG | + | chr1.1:77532795-77532814 | MS.gene71722:intron | 35.0% | |
| ! | AATAGACCTGATTTTCTTCG+AGG | + | chr1.1:77531511-77531530 | MS.gene71722:CDS | 35.0% |
| ! | AGTGATTGGTTGATCCAAAT+AGG | + | chr1.1:77534447-77534466 | MS.gene71722:intron | 35.0% |
| ! | CACACATACTCAAGTTTGTT+GGG | - | chr1.1:77534383-77534402 | None:intergenic | 35.0% |
| ! | CAGGTTTTTACAATCAGTCT+GGG | + | chr1.1:77534180-77534199 | MS.gene71722:CDS | 35.0% |
| ! | CATAGAGTATCCATAGAACA+AGG | - | chr1.1:77535128-77535147 | None:intergenic | 35.0% |
| ! | CTTTGCTAGATGGTGATTTT+TGG | + | chr1.1:77534330-77534349 | MS.gene71722:intron | 35.0% |
| ! | GACGTTTATGGTTTTTGCAA+GGG | - | chr1.1:77533106-77533125 | None:intergenic | 35.0% |
| ! | GTCCAAATATTTAAGGCTAG+AGG | + | chr1.1:77532035-77532054 | MS.gene71722:intron | 35.0% |
| ! | GTCTTATGGTTTGTCTCATT+TGG | + | chr1.1:77532396-77532415 | MS.gene71722:CDS | 35.0% |
| ! | GTGATTGGTTGATCCAAATA+GGG | + | chr1.1:77534448-77534467 | MS.gene71722:intron | 35.0% |
| ! | GTTTTCACTTGTATTCAACC+AGG | + | chr1.1:77534493-77534512 | MS.gene71722:intron | 35.0% |
| ! | TCCAAGTATTTAAGGCTAGA+GGG | + | chr1.1:77532164-77532183 | MS.gene71722:intron | 35.0% |
| ! | TGACGTTTATGGTTTTTGCA+AGG | - | chr1.1:77533107-77533126 | None:intergenic | 35.0% |
| ! | TTCTGAAGGCTAAGTAAAAG+TGG | - | chr1.1:77534985-77535004 | None:intergenic | 35.0% |
| ! | TTGCTTATATTTAAGGCCGA+GGG | - | chr1.1:77531997-77532016 | None:intergenic | 35.0% |
| ! | TTTGCTTATATTTAAGGCCG+AGG | - | chr1.1:77531998-77532017 | None:intergenic | 35.0% |
| !! | AAAAAAATGGAGGGTATCCA+AGG | - | chr1.1:77533028-77533047 | None:intergenic | 35.0% |
| !! | TCAATGTTTTAAATGCCGGT+AGG | - | chr1.1:77534589-77534608 | None:intergenic | 35.0% |
| !! | TCCCTCTAGCCTTAAATATT+TGG | - | chr1.1:77532040-77532059 | None:intergenic | 35.0% |
| !!! | ATTTTTCTCTTGGCTCTAAC+TGG | + | chr1.1:77533375-77533394 | MS.gene71722:CDS | 35.0% |
| !!! | TTTGATTCCACTTTTTCAGG+AGG | + | chr1.1:77531385-77531404 | MS.gene71722:intron | 35.0% |
| AAAGTCTTACGATGCAGCAA+AGG | - | chr1.1:77532526-77532545 | None:intergenic | 40.0% | |
| AAGGATCCAATCGTTCACAA+AGG | + | chr1.1:77532472-77532491 | MS.gene71722:CDS | 40.0% | |
| ACTAACCACCATGCAACATT+CGG | - | chr1.1:77534523-77534542 | None:intergenic | 40.0% | |
| AGATCCTTGCTGCATTTAAG+TGG | + | chr1.1:77531726-77531745 | MS.gene71722:intron | 40.0% | |
| ATGAAGGCTCATTCCTTCAA+TGG | + | chr1.1:77531057-77531076 | MS.gene71722:CDS | 40.0% | |
| ATGCTAAATTTGTGCTCTGG+TGG | - | chr1.1:77535227-77535246 | None:intergenic | 40.0% | |
| ATTCATCTATGCTGTGGATG+GGG | + | chr1.1:77532432-77532451 | MS.gene71722:CDS | 40.0% | |
| CATCCTTTGCAATTCAGTCA+TGG | - | chr1.1:77532801-77532820 | None:intergenic | 40.0% | |
| CCAGACTGATTGTAAAAACC+TGG | - | chr1.1:77534182-77534201 | None:intergenic | 40.0% | |
| CGAGGATTTCATCGTTATCA+CGG | + | chr1.1:77531529-77531548 | MS.gene71722:CDS | 40.0% | |
| CTTGTGATTCATCTATGCTG+TGG | + | chr1.1:77532426-77532445 | MS.gene71722:CDS | 40.0% | |
| GAGGAGTGAATATAGGTTCA+TGG | + | chr1.1:77531410-77531429 | MS.gene71722:CDS | 40.0% | |
| GATCCTTGCTGCATTTAAGT+GGG | + | chr1.1:77531727-77531746 | MS.gene71722:intron | 40.0% | |
| GATTCATCTATGCTGTGGAT+GGG | + | chr1.1:77532431-77532450 | MS.gene71722:CDS | 40.0% | |
| GCAACCACATTCATTCTTTG+CGG | + | chr1.1:77533673-77533692 | MS.gene71722:CDS | 40.0% | |
| GCAATGCTAAATTTGTGCTC+TGG | - | chr1.1:77535230-77535249 | None:intergenic | 40.0% | |
| GCCTTCAGCCAAAATTCAAA+TGG | + | chr1.1:77534470-77534489 | MS.gene71722:intron | 40.0% | |
| GCTAACTGCAAGTAAATCTC+TGG | - | chr1.1:77534922-77534941 | None:intergenic | 40.0% | |
| GGATGTATTCTCCTTTCTGT+TGG | + | chr1.1:77532979-77532998 | MS.gene71722:CDS | 40.0% | |
| GTAAAAGGGTAAATGGCCAA+AGG | - | chr1.1:77533793-77533812 | None:intergenic | 40.0% | |
| GTGGTTGGGATATTTCAGAT+CGG | + | chr1.1:77531551-77531570 | MS.gene71722:CDS | 40.0% | |
| GTTTCATTCTTGCCGTCTTA+TGG | + | chr1.1:77532382-77532401 | MS.gene71722:CDS | 40.0% | |
| TACTCCTGCCATAACAAACA+AGG | - | chr1.1:77533355-77533374 | None:intergenic | 40.0% | |
| TATCTATGATGAAAGGAGGG+GGG | - | chr1.1:77532663-77532682 | None:intergenic | 40.0% | |
| TATTTGCACTACAGTTGGCA+GGG | + | chr1.1:77534891-77534910 | MS.gene71722:CDS | 40.0% | |
| TCAGGTATTTGCACTACAGT+TGG | + | chr1.1:77534886-77534905 | MS.gene71722:CDS | 40.0% | |
| TCTGATACTTGCATGGCTAT+GGG | + | chr1.1:77533981-77534000 | MS.gene71722:CDS | 40.0% | |
| TGAAGATGTACATACTCCCT+CGG | + | chr1.1:77531978-77531997 | MS.gene71722:intron | 40.0% | |
| TGAAGGCTCATTCCTTCAAT+GGG | + | chr1.1:77531058-77531077 | MS.gene71722:CDS | 40.0% | |
| TGATTCATCTATGCTGTGGA+TGG | + | chr1.1:77532430-77532449 | MS.gene71722:CDS | 40.0% | |
| TGCACAGAGAACAACAATGA+TGG | - | chr1.1:77531915-77531934 | None:intergenic | 40.0% | |
| TGCTGCATTTAAGTGGGAAA+TGG | + | chr1.1:77531733-77531752 | MS.gene71722:intron | 40.0% | |
| TGGATGGGGGATTAACATAA+AGG | + | chr1.1:77532446-77532465 | MS.gene71722:CDS | 40.0% | |
| TGTGGAACTAAATACTGCAG+CGG | + | chr1.1:77533176-77533195 | MS.gene71722:CDS | 40.0% | |
| TGTTATCACTGGATGGTTAC+TGG | + | chr1.1:77533648-77533667 | MS.gene71722:CDS | 40.0% | |
| TTATTGGGCTGTAAGTGCTT+TGG | + | chr1.1:77531576-77531595 | MS.gene71722:intron | 40.0% | |
| TTCATCTGCCAATGCTTCAA+TGG | + | chr1.1:77534274-77534293 | MS.gene71722:CDS | 40.0% | |
| TTCGGTCTGTGAATCGTAAA+AGG | + | chr1.1:77534793-77534812 | MS.gene71722:intron | 40.0% | |
| TTCTGATACTTGCATGGCTA+TGG | + | chr1.1:77533980-77533999 | MS.gene71722:CDS | 40.0% | |
| TTCTTTGATCAACGCATGGA+AGG | - | chr1.1:77534052-77534071 | None:intergenic | 40.0% | |
| TTGCAATCTCTCAATCACAC+AGG | + | chr1.1:77532953-77532972 | MS.gene71722:intron | 40.0% | |
| TTGGGAGAATTATGTATGCG+AGG | + | chr1.1:77534855-77534874 | MS.gene71722:CDS | 40.0% | |
| TTGTCAAAGGGATAGCATAG+TGG | - | chr1.1:77534218-77534237 | None:intergenic | 40.0% | |
| TTGTTGTCGAGTGAGAAGAT+TGG | + | chr1.1:77532299-77532318 | MS.gene71722:intron | 40.0% | |
| TTTCCCACTTAAATGCAGCA+AGG | - | chr1.1:77531733-77531752 | None:intergenic | 40.0% | |
| ! | AATCTTAGGGCTTTTGTTGG+TGG | + | chr1.1:77531250-77531269 | MS.gene71722:intron | 40.0% |
| ! | ATCTTAGGGCTTTTGTTGGT+GGG | + | chr1.1:77531251-77531270 | MS.gene71722:intron | 40.0% |
| ! | ATGGTTTGTCTCATTTGGCT+TGG | + | chr1.1:77532401-77532420 | MS.gene71722:CDS | 40.0% |
| ! | CCAGGTTTTTACAATCAGTC+TGG | + | chr1.1:77534179-77534198 | MS.gene71722:CDS | 40.0% |
| ! | GGCAGGAGTAATTTTTCTCT+TGG | + | chr1.1:77533365-77533384 | MS.gene71722:CDS | 40.0% |
| ! | GTCCAAGTATTTAAGGCTAG+AGG | + | chr1.1:77532163-77532182 | MS.gene71722:intron | 40.0% |
| ! | TTCTGCTTTGCCTTGTTCTA+TGG | + | chr1.1:77535115-77535134 | MS.gene71722:CDS | 40.0% |
| !! | CATACTCAAGTTTGTTGGGA+TGG | - | chr1.1:77534379-77534398 | None:intergenic | 40.0% |
| !! | CATCAGATGGAAGAAGTATC+TGG | - | chr1.1:77533131-77533150 | None:intergenic | 40.0% |
| !! | GCAGATTTGTTATCACTGGA+TGG | + | chr1.1:77533641-77533660 | MS.gene71722:intron | 40.0% |
| !! | TCCCTCTAGCCTTAAATACT+TGG | - | chr1.1:77532168-77532187 | None:intergenic | 40.0% |
| !!! | CCCATTTGAATTTTGGCTGA+AGG | - | chr1.1:77534474-77534493 | None:intergenic | 40.0% |
| !!! | GCTAGATGGTGATTTTTGGT+AGG | + | chr1.1:77534334-77534353 | MS.gene71722:intron | 40.0% |
| !!! | GTGATTTTCTGTGATGGGTT+TGG | + | chr1.1:77531214-77531233 | MS.gene71722:intron | 40.0% |
| !!! | TTCGTTTTTTTGGCTCCCTT+TGG | + | chr1.1:77533774-77533793 | MS.gene71722:intron | 40.0% |
| AATGCAACAAAGGGTCATCC+AGG | + | chr1.1:77534161-77534180 | MS.gene71722:CDS | 45.0% | |
| ACAAACACTTCTCCCCTTTG+GGG | - | chr1.1:77535159-77535178 | None:intergenic | 45.0% | |
| ACTTATCCTGCCCAACAGAA+AGG | - | chr1.1:77532993-77533012 | None:intergenic | 45.0% | |
| ACTTCTTCCATCTGATGTCC+TGG | + | chr1.1:77533134-77533153 | MS.gene71722:CDS | 45.0% | |
| ATACCATCCAGGACATCAGA+TGG | - | chr1.1:77533144-77533163 | None:intergenic | 45.0% | |
| ATCTATGATGAAAGGAGGGG+GGG | - | chr1.1:77532662-77532681 | None:intergenic | 45.0% | |
| ATCTCTCAATCACACAGGAC+TGG | + | chr1.1:77532958-77532977 | MS.gene71722:intron | 45.0% | |
| CACAAACACTTCTCCCCTTT+GGG | - | chr1.1:77535160-77535179 | None:intergenic | 45.0% | |
| CACTCCGCAAAGAATGAATG+TGG | - | chr1.1:77533680-77533699 | None:intergenic | 45.0% | |
| CAGATAGCTAGGCATAGCAA+AGG | - | chr1.1:77533574-77533593 | None:intergenic | 45.0% | |
| CTAAGAGCAGATTCTCTGTG+TGG | - | chr1.1:77534023-77534042 | None:intergenic | 45.0% | |
| CTCTTATTCTGGCGGCAAAT+AGG | + | chr1.1:77531485-77531504 | MS.gene71722:CDS | 45.0% | |
| GCAGAACACCAACTGAAATG+AGG | - | chr1.1:77535101-77535120 | None:intergenic | 45.0% | |
| GGAGGAAGAGGAGTGAATAT+AGG | + | chr1.1:77531403-77531422 | MS.gene71722:intron | 45.0% | |
| GGATTTCATCGTTATCACGG+TGG | + | chr1.1:77531532-77531551 | MS.gene71722:CDS | 45.0% | |
| GGTCTGTGAATCGTAAAAGG+AGG | + | chr1.1:77534796-77534815 | MS.gene71722:intron | 45.0% | |
| GTATTTGCACTACAGTTGGC+AGG | + | chr1.1:77534890-77534909 | MS.gene71722:CDS | 45.0% | |
| GTGGTTCTTTGATCAACGCA+TGG | - | chr1.1:77534056-77534075 | None:intergenic | 45.0% | |
| GTGTGTTAGACATGACCTAC+CGG | + | chr1.1:77534571-77534590 | MS.gene71722:intron | 45.0% | |
| GTTGATATCCAAGGAGAGAC+AGG | - | chr1.1:77533508-77533527 | None:intergenic | 45.0% | |
| GTTGGGCAGGATAAGTTTCA+CGG | + | chr1.1:77532997-77533016 | MS.gene71722:CDS | 45.0% | |
| TAGACTTCACTGCCTGCATT+TGG | - | chr1.1:77535252-77535271 | None:intergenic | 45.0% | |
| TATTCTCCTTTCTGTTGGGC+AGG | + | chr1.1:77532984-77533003 | MS.gene71722:CDS | 45.0% | |
| TCAAAGGGATAGCATAGTGG+CGG | - | chr1.1:77534215-77534234 | None:intergenic | 45.0% | |
| TCACAAACACTTCTCCCCTT+TGG | - | chr1.1:77535161-77535180 | None:intergenic | 45.0% | |
| TCATCGTTATCACGGTGGTT+GGG | + | chr1.1:77531537-77531556 | MS.gene71722:CDS | 45.0% | |
| TCCTCTTCCTCCTGAAAAAG+TGG | - | chr1.1:77531395-77531414 | None:intergenic | 45.0% | |
| TTCATCGTTATCACGGTGGT+TGG | + | chr1.1:77531536-77531555 | MS.gene71722:CDS | 45.0% | |
| TTCATCTATGCTGTGGATGG+GGG | + | chr1.1:77532433-77532452 | MS.gene71722:CDS | 45.0% | |
| TTGCAGTCAGTTGGATTCAC+CGG | + | chr1.1:77532351-77532370 | MS.gene71722:intron | 45.0% | |
| TTGCATGGCTATGGGAGAAT+GGG | + | chr1.1:77533989-77534008 | MS.gene71722:CDS | 45.0% | |
| TTTGTCAGGGATGCATTCAC+AGG | + | chr1.1:77535012-77535031 | MS.gene71722:CDS | 45.0% | |
| ! | GCAGACTCTGAGAAATGTCA+CGG | + | chr1.1:77533071-77533090 | MS.gene71722:CDS | 45.0% |
| ! | GTATGCGAGGTATCTGAATC+AGG | + | chr1.1:77534868-77534887 | MS.gene71722:CDS | 45.0% |
| !! | ACTCAAGTTTGTTGGGATGG+CGG | - | chr1.1:77534376-77534395 | None:intergenic | 45.0% |
| !! | TTTTGGCTGAAGGCCCTATT+TGG | - | chr1.1:77534464-77534483 | None:intergenic | 45.0% |
| !!! | CTGCTTATTTTGTAGGCGCA+CGG | + | chr1.1:77533329-77533348 | MS.gene71722:intron | 45.0% |
| !!! | TCCACTTTTTCAGGAGGAAG+AGG | + | chr1.1:77531391-77531410 | MS.gene71722:intron | 45.0% |
| !! | TCTAAAAAATAAATAAAAAA+AGG | - | chr1.1:77533603-77533622 | None:intergenic | 5.0% |
| AAGAATGAAACCCGTGGCAC+CGG | - | chr1.1:77532373-77532392 | None:intergenic | 50.0% | |
| CAAACACTTCTCCCCTTTGG+GGG | - | chr1.1:77535158-77535177 | None:intergenic | 50.0% | |
| CAGGTGAACCGAATGTTGCA+TGG | + | chr1.1:77534512-77534531 | MS.gene71722:intron | 50.0% | |
| CATGCAACATTCGGTTCACC+TGG | - | chr1.1:77534514-77534533 | None:intergenic | 50.0% | |
| CTTCCATCTGATGTCCTGGA+TGG | + | chr1.1:77533138-77533157 | MS.gene71722:CDS | 50.0% | |
| CTTGCATGGCTATGGGAGAA+TGG | + | chr1.1:77533988-77534007 | MS.gene71722:CDS | 50.0% | |
| GGACTTGGCCTCATTTCAGT+TGG | + | chr1.1:77535090-77535109 | MS.gene71722:CDS | 50.0% | |
| GTATTATCACCTAGTGGCCC+TGG | - | chr1.1:77531466-77531485 | None:intergenic | 50.0% | |
| GTGAACCGAATGTTGCATGG+TGG | + | chr1.1:77534515-77534534 | MS.gene71722:intron | 50.0% | |
| TCTATGATGAAAGGAGGGGG+GGG | - | chr1.1:77532661-77532680 | None:intergenic | 50.0% | |
| !! | ACGGCCTTGTTTGTTATGGC+AGG | + | chr1.1:77533348-77533367 | MS.gene71722:CDS | 50.0% |
| !! | CTCAAGTTTGTTGGGATGGC+GGG | - | chr1.1:77534375-77534394 | None:intergenic | 50.0% |
| !! | CTCTTGGCTCTAACTGGACT+AGG | + | chr1.1:77533381-77533400 | MS.gene71722:CDS | 50.0% |
| !! | TCAAGTTTGTTGGGATGGCG+GGG | - | chr1.1:77534374-77534393 | None:intergenic | 50.0% |
| CATGGCTATGGGAGAATGGG+TGG | + | chr1.1:77533992-77534011 | MS.gene71722:CDS | 55.0% | |
| CTATGATGAAAGGAGGGGGG+GGG | - | chr1.1:77532660-77532679 | None:intergenic | 55.0% | |
| GACGGCAAGAATGAAACCCG+TGG | - | chr1.1:77532379-77532398 | None:intergenic | 55.0% | |
| GCAGGATAAGTTTCACGGCG+AGG | + | chr1.1:77533002-77533021 | MS.gene71722:CDS | 55.0% | |
| GGATAGCATAGTGGCGGCAT+TGG | - | chr1.1:77534209-77534228 | None:intergenic | 55.0% | |
| TAAGTTTCACGGCGAGGCCT+TGG | + | chr1.1:77533008-77533027 | MS.gene71722:CDS | 55.0% | |
| TATGATGAAAGGAGGGGGGG+GGG | - | chr1.1:77532659-77532678 | None:intergenic | 55.0% | |
| ! | AGTTGGATTCACCGGTGCCA+CGG | + | chr1.1:77532359-77532378 | MS.gene71722:CDS | 55.0% |
| ! | TAGCATAGTGGCGGCATTGG+AGG | - | chr1.1:77534206-77534225 | None:intergenic | 55.0% |
| !! | GCGCACGGCCTTGTTTGTTA+TGG | + | chr1.1:77533344-77533363 | MS.gene71722:CDS | 55.0% |
| ACACAAGTGGCTCCAGCACC+AGG | + | chr1.1:77531445-77531464 | MS.gene71722:CDS | 60.0% | |
| ATGATGAAAGGAGGGGGGGG+GGG | - | chr1.1:77532658-77532677 | None:intergenic | 60.0% | |
| CACAAGTGGCTCCAGCACCA+GGG | + | chr1.1:77531446-77531465 | MS.gene71722:CDS | 60.0% | |
| CTATGCGAACCGCCCCCAAA+GGG | + | chr1.1:77535143-77535162 | MS.gene71722:CDS | 60.0% | |
| TATGCGAACCGCCCCCAAAG+GGG | + | chr1.1:77535144-77535163 | MS.gene71722:CDS | 60.0% | |
| TCGGCAGTCCTGTCTCTCCT+TGG | + | chr1.1:77533497-77533516 | MS.gene71722:intron | 60.0% | |
| TCTATGCGAACCGCCCCCAA+AGG | + | chr1.1:77535142-77535161 | MS.gene71722:CDS | 60.0% | |
| ! | ACACTTCTCCCCTTTGGGGG+CGG | - | chr1.1:77535155-77535174 | None:intergenic | 60.0% |
| !! | AGTTTGTTGGGATGGCGGGG+AGG | - | chr1.1:77534371-77534390 | None:intergenic | 60.0% |
| !! | GTTGGATTCACCGGTGCCAC+GGG | + | chr1.1:77532360-77532379 | MS.gene71722:CDS | 60.0% |
| !! | GTTTGTTGGGATGGCGGGGA+GGG | - | chr1.1:77534370-77534389 | None:intergenic | 60.0% |
| TCACCTAGTGGCCCTGGTGC+TGG | - | chr1.1:77531460-77531479 | None:intergenic | 65.0% | |
| TGATGAAAGGAGGGGGGGGG+GGG | - | chr1.1:77532657-77532676 | None:intergenic | 65.0% | |
| ATGAAAGGAGGGGGGGGGGG+GGG | - | chr1.1:77532655-77532674 | None:intergenic | 70.0% | |
| GATGAAAGGAGGGGGGGGGG+GGG | - | chr1.1:77532656-77532675 | None:intergenic | 70.0% | |
| GCTCCAGCACCAGGGCCACT+AGG | + | chr1.1:77531454-77531473 | MS.gene71722:CDS | 70.0% | |
| !! | GTTGGGATGGCGGGGAGGGA+GGG | - | chr1.1:77534366-77534385 | None:intergenic | 70.0% |
| !! | TGTTGGGATGGCGGGGAGGG+AGG | - | chr1.1:77534367-77534386 | None:intergenic | 70.0% |
| !! | TTGGGATGGCGGGGAGGGAG+GGG | - | chr1.1:77534365-77534384 | None:intergenic | 70.0% |
| TGAAAGGAGGGGGGGGGGGG+GGG | - | chr1.1:77532654-77532673 | None:intergenic | 75.0% | |
| !! | TGGGATGGCGGGGAGGGAGG+GGG | - | chr1.1:77534364-77534383 | None:intergenic | 75.0% |
| ! | AAAGGAGGGGGGGGGGGGGG+GGG | - | chr1.1:77532652-77532671 | None:intergenic | 80.0% |
| ! | GAAAGGAGGGGGGGGGGGGG+GGG | - | chr1.1:77532653-77532672 | None:intergenic | 80.0% |
| !!! | GGGATGGCGGGGAGGGAGGG+GGG | - | chr1.1:77534363-77534382 | None:intergenic | 80.0% |
| ! | AAGGAGGGGGGGGGGGGGGG+GGG | - | chr1.1:77532651-77532670 | None:intergenic | 85.0% |
| ! | AGGAGGGGGGGGGGGGGGGG+GGG | - | chr1.1:77532650-77532669 | None:intergenic | 90.0% |
| ! | AGGGGGGGGGGGGGGGGGGG+GGG | - | chr1.1:77532647-77532666 | None:intergenic | 95.0% |
| ! | GAGGGGGGGGGGGGGGGGGG+GGG | - | chr1.1:77532648-77532667 | None:intergenic | 95.0% |
| ! | GGAGGGGGGGGGGGGGGGGG+GGG | - | chr1.1:77532649-77532668 | None:intergenic | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 77531057 | 77535272 | 77531057 | ID=MS.gene71722 |
| chr1.1 | mRNA | 77531057 | 77535272 | 77531057 | ID=MS.gene71722.t1;Parent=MS.gene71722 |
| chr1.1 | exon | 77531057 | 77531183 | 77531057 | ID=MS.gene71722.t1.exon1;Parent=MS.gene71722.t1 |
| chr1.1 | CDS | 77531057 | 77531183 | 77531057 | ID=cds.MS.gene71722.t1;Parent=MS.gene71722.t1 |
| chr1.1 | exon | 77531404 | 77531585 | 77531404 | ID=MS.gene71722.t1.exon2;Parent=MS.gene71722.t1 |
| chr1.1 | CDS | 77531404 | 77531585 | 77531404 | ID=cds.MS.gene71722.t1;Parent=MS.gene71722.t1 |
| chr1.1 | exon | 77532357 | 77532535 | 77532357 | ID=MS.gene71722.t1.exon3;Parent=MS.gene71722.t1 |
| chr1.1 | CDS | 77532357 | 77532535 | 77532357 | ID=cds.MS.gene71722.t1;Parent=MS.gene71722.t1 |
| chr1.1 | exon | 77532975 | 77533259 | 77532975 | ID=MS.gene71722.t1.exon4;Parent=MS.gene71722.t1 |
| chr1.1 | CDS | 77532975 | 77533259 | 77532975 | ID=cds.MS.gene71722.t1;Parent=MS.gene71722.t1 |
| chr1.1 | exon | 77533344 | 77533402 | 77533344 | ID=MS.gene71722.t1.exon5;Parent=MS.gene71722.t1 |
| chr1.1 | CDS | 77533344 | 77533402 | 77533344 | ID=cds.MS.gene71722.t1;Parent=MS.gene71722.t1 |
| chr1.1 | exon | 77533504 | 77533540 | 77533504 | ID=MS.gene71722.t1.exon6;Parent=MS.gene71722.t1 |
| chr1.1 | CDS | 77533504 | 77533540 | 77533504 | ID=cds.MS.gene71722.t1;Parent=MS.gene71722.t1 |
| chr1.1 | exon | 77533645 | 77533716 | 77533645 | ID=MS.gene71722.t1.exon7;Parent=MS.gene71722.t1 |
| chr1.1 | CDS | 77533645 | 77533716 | 77533645 | ID=cds.MS.gene71722.t1;Parent=MS.gene71722.t1 |
| chr1.1 | exon | 77533974 | 77534295 | 77533974 | ID=MS.gene71722.t1.exon8;Parent=MS.gene71722.t1 |
| chr1.1 | CDS | 77533974 | 77534295 | 77533974 | ID=cds.MS.gene71722.t1;Parent=MS.gene71722.t1 |
| chr1.1 | exon | 77534853 | 77535272 | 77534853 | ID=MS.gene71722.t1.exon9;Parent=MS.gene71722.t1 |
| chr1.1 | CDS | 77534853 | 77535272 | 77534853 | ID=cds.MS.gene71722.t1;Parent=MS.gene71722.t1 |
| Gene Sequence |
| Protein sequence |
