Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71931.t1 | XP_003608731.1 | 98.3 | 301 | 5 | 0 | 1 | 301 | 50 | 350 | 1.50E-160 | 575.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71931.t1 | P22989 | 66.2 | 302 | 101 | 1 | 1 | 301 | 43 | 344 | 7.0e-111 | 401.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71931.t1 | G7JIY5 | 98.3 | 301 | 5 | 0 | 1 | 301 | 50 | 350 | 1.1e-160 | 575.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04991 | MS.gene71931 | 0.812958 | 3.26E-51 | -1.69E-46 |
| MS.gene051122 | MS.gene71931 | -0.831187 | 1.92E-55 | -1.69E-46 |
| MS.gene052464 | MS.gene71931 | -0.803161 | 3.98E-49 | -1.69E-46 |
| MS.gene052674 | MS.gene71931 | -0.802808 | 4.71E-49 | -1.69E-46 |
| MS.gene052677 | MS.gene71931 | -0.80072 | 1.26E-48 | -1.69E-46 |
| MS.gene052965 | MS.gene71931 | 0.851766 | 7.17E-61 | -1.69E-46 |
| MS.gene054479 | MS.gene71931 | -0.801152 | 1.03E-48 | -1.69E-46 |
| MS.gene055505 | MS.gene71931 | -0.802672 | 5.02E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene71931 | -0.865573 | 5.35E-65 | -1.69E-46 |
| MS.gene057156 | MS.gene71931 | 0.823216 | 1.56E-53 | -1.69E-46 |
| MS.gene05761 | MS.gene71931 | -0.830462 | 2.90E-55 | -1.69E-46 |
| MS.gene058223 | MS.gene71931 | 0.81418 | 1.76E-51 | -1.69E-46 |
| MS.gene059511 | MS.gene71931 | -0.812518 | 4.07E-51 | -1.69E-46 |
| MS.gene060850 | MS.gene71931 | -0.827672 | 1.37E-54 | -1.69E-46 |
| MS.gene060851 | MS.gene71931 | -0.844394 | 7.77E-59 | -1.69E-46 |
| MS.gene060852 | MS.gene71931 | -0.846298 | 2.37E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71931.t1 | MTR_4g101130 | 98.339 | 301 | 5 | 0 | 1 | 301 | 50 | 350 | 0.0 | 601 |
| MS.gene71931.t1 | MTR_5g012390 | 85.714 | 301 | 43 | 0 | 1 | 301 | 50 | 350 | 0.0 | 530 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71931.t1 | AT4G17260 | 80.066 | 301 | 60 | 0 | 1 | 301 | 53 | 353 | 0.0 | 508 |
| MS.gene71931.t1 | AT2G22780 | 24.111 | 253 | 172 | 7 | 56 | 301 | 110 | 349 | 3.50e-11 | 63.5 |
Find 105 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTGGCGCGTTCCATTATT+AGG | 0.155648 | 8.4:+23234731 | MS.gene71931:CDS |
| TACATCGCATGGAAGCTTTC+TGG | 0.223266 | 8.4:+23233531 | MS.gene71931:CDS |
| GTCTAAAAGGTTACACTTCT+TGG | 0.242478 | 8.4:+23234686 | MS.gene71931:CDS |
| CATCGGGTCGGGTACCAATT+TGG | 0.245882 | 8.4:+23233572 | MS.gene71931:CDS |
| TTTCCTTTGGTCCCTAATAA+TGG | 0.266030 | 8.4:-23234743 | None:intergenic |
| GAGGAATCTTTCTCTGTTCC+AGG | 0.273770 | 8.4:+23233431 | MS.gene71931:CDS |
| AATTCACCCTGTGTCTGTTT+TGG | 0.299725 | 8.4:+23234765 | MS.gene71931:CDS |
| TTTCTGGGTTTCCTTCTAAT+CGG | 0.317162 | 8.4:+23233547 | MS.gene71931:CDS |
| TATGAAGTCATCAGTCTAAA+AGG | 0.318657 | 8.4:+23234673 | MS.gene71931:CDS |
| CTTGGCGCGTTCCATTATTA+GGG | 0.327453 | 8.4:+23234732 | MS.gene71931:CDS |
| ATTTGGATTCATCTCGGTTT+CGG | 0.328348 | 8.4:+23233589 | MS.gene71931:CDS |
| GCCATTGGGTACTCGGTGGC+TGG | 0.359042 | 8.4:+23234709 | MS.gene71931:CDS |
| TTTAAATACCCAACTGAGTC+TGG | 0.359309 | 8.4:-23234939 | None:intergenic |
| ACATCGCATGGAAGCTTTCT+GGG | 0.367928 | 8.4:+23233532 | MS.gene71931:CDS |
| GACCCGATGACCCGATTAGA+AGG | 0.368385 | 8.4:-23233558 | None:intergenic |
| GGATTCTGCTAAAACTATCT+TGG | 0.379469 | 8.4:+23234912 | MS.gene71931:CDS |
| TGGGTACTCGGTGGCTGGCT+TGG | 0.388620 | 8.4:+23234714 | MS.gene71931:CDS |
| AAACCGAGATGAATCCAAAT+TGG | 0.390309 | 8.4:-23233586 | None:intergenic |
| CATCTCGCCGCGGAGTTTGT+CGG | 0.392604 | 8.4:-23233262 | None:intergenic |
| TTCCTTCTAATCGGGTCATC+GGG | 0.399644 | 8.4:+23233556 | MS.gene71931:CDS |
| CCTCCTCTTCCAAGCTGTGC+TGG | 0.408953 | 8.4:-23234835 | None:intergenic |
| ATCTCGCCGCGGAGTTTGTC+GGG | 0.409424 | 8.4:-23233261 | None:intergenic |
| ATGAGGAGGAACAAAGGCTT+AGG | 0.410444 | 8.4:+23234890 | MS.gene71931:CDS |
| GGTCAACGCTCAGGATGTTC+AGG | 0.411810 | 8.4:+23233635 | MS.gene71931:CDS |
| TTCTTGGGCCATTGGGTACT+CGG | 0.413662 | 8.4:+23234702 | MS.gene71931:CDS |
| TCTAATCGGGTCATCGGGTC+GGG | 0.422317 | 8.4:+23233561 | MS.gene71931:CDS |
| TTCTGGGTTTCCTTCTAATC+GGG | 0.423028 | 8.4:+23233548 | MS.gene71931:CDS |
| ATGTAGGTAAGAACATCAAC+GGG | 0.425256 | 8.4:-23233513 | None:intergenic |
| TTTCCTTCTAATCGGGTCAT+CGG | 0.428046 | 8.4:+23233555 | MS.gene71931:CDS |
| GGTTACACTTCTTGGGCCAT+TGG | 0.429243 | 8.4:+23234694 | MS.gene71931:CDS |
| ACGATGATCAGAACCGTTTC+CGG | 0.432903 | 8.4:-23233483 | None:intergenic |
| TCTAAAAGGTTACACTTCTT+GGG | 0.435111 | 8.4:+23234687 | MS.gene71931:CDS |
| CGTCGGTGAGGTCTTGAGTT+AGG | 0.435609 | 8.4:-23233215 | None:intergenic |
| GGCTCGTTACTCGCCGGAAA+CGG | 0.437337 | 8.4:+23233470 | MS.gene71931:CDS |
| TTCTAATCGGGTCATCGGGT+CGG | 0.439376 | 8.4:+23233560 | MS.gene71931:CDS |
| GTTACACTTCTTGGGCCATT+GGG | 0.447787 | 8.4:+23234695 | MS.gene71931:CDS |
| CATGCATAGTAGGGGAGCAC+GGG | 0.454511 | 8.4:+23234518 | MS.gene71931:CDS |
| TTGGTGCAGGCATGCATAGT+AGG | 0.460381 | 8.4:+23234508 | MS.gene71931:intron |
| GAACATCCTGAGCGTTGACC+TGG | 0.466613 | 8.4:-23233632 | None:intergenic |
| CTTGGAAGAGGAGGGGTGCT+TGG | 0.474117 | 8.4:+23234844 | MS.gene71931:CDS |
| GAGATCGGAGCCAGCAGTAA+CGG | 0.484502 | 8.4:-23233349 | None:intergenic |
| TGGTGCAGGCATGCATAGTA+GGG | 0.501326 | 8.4:+23234509 | MS.gene71931:intron |
| ACCGATCTGCCTTGCACCGG+CGG | 0.505308 | 8.4:-23233382 | None:intergenic |
| TTGGAGGTCCAGACTCAGTT+GGG | 0.507271 | 8.4:+23234931 | MS.gene71931:CDS |
| CCTCATTGCTGATCACCTCC+AGG | 0.512139 | 8.4:+23233614 | MS.gene71931:CDS |
| GTTGAATACTCCGTTACTGC+TGG | 0.512854 | 8.4:+23233339 | MS.gene71931:CDS |
| GCATGCATAGTAGGGGAGCA+CGG | 0.515411 | 8.4:+23234517 | MS.gene71931:CDS |
| CTCATTATTCATGTGCACAT+TGG | 0.516320 | 8.4:-23234872 | None:intergenic |
| GTATTGTCACCGCCGGTGCA+AGG | 0.516525 | 8.4:+23233373 | MS.gene71931:CDS |
| TCACCTCCAGGTCAACGCTC+AGG | 0.517562 | 8.4:+23233626 | MS.gene71931:CDS |
| CCCTTTGGCTCGTTACTCGC+CGG | 0.519160 | 8.4:+23233464 | MS.gene71931:CDS |
| TGGTCTAGCATCAGCATTGG+TGG | 0.521752 | 8.4:+23234559 | MS.gene71931:CDS |
| TGAGGAGGAACAAAGGCTTA+GGG | 0.530899 | 8.4:+23234891 | MS.gene71931:CDS |
| TTGCCAGCACAGCTTGGAAG+AGG | 0.536651 | 8.4:+23234832 | MS.gene71931:CDS |
| CTTGGAGGTCCAGACTCAGT+TGG | 0.544227 | 8.4:+23234930 | MS.gene71931:CDS |
| TTCTGCTAAAACTATCTTGG+AGG | 0.545697 | 8.4:+23234915 | MS.gene71931:CDS |
| CCGGCGAGTAACGAGCCAAA+GGG | 0.546843 | 8.4:-23233464 | None:intergenic |
| ACCGCCGGTGCAAGGCAGAT+CGG | 0.553456 | 8.4:+23233381 | MS.gene71931:CDS |
| ATGTTCTTACCTACATCGCA+TGG | 0.553838 | 8.4:+23233520 | MS.gene71931:CDS |
| CCAGCACAGCTTGGAAGAGG+AGG | 0.555853 | 8.4:+23234835 | MS.gene71931:CDS |
| CCCTTAGCCAAAACAGACAC+AGG | 0.556926 | 8.4:-23234772 | None:intergenic |
| GGCAGATCGGTGGTGAGTCT+AGG | 0.557502 | 8.4:+23233394 | MS.gene71931:CDS |
| TGCATATGAGAAAGAAACGC+TGG | 0.561783 | 8.4:+23234618 | MS.gene71931:CDS |
| CAGCACAGCTTGGAAGAGGA+GGG | 0.569000 | 8.4:+23234836 | MS.gene71931:CDS |
| GGTAAGAACATCAACGGGGT+TGG | 0.569302 | 8.4:-23233508 | None:intergenic |
| TTGAGCTTGCCAGCACAGCT+TGG | 0.573311 | 8.4:+23234826 | MS.gene71931:CDS |
| AGAAAGCTTCCATGCGATGT+AGG | 0.573366 | 8.4:-23233529 | None:intergenic |
| GTACCAATTTGGATTCATCT+CGG | 0.575971 | 8.4:+23233583 | MS.gene71931:CDS |
| TCCGGCGAGTAACGAGCCAA+AGG | 0.577653 | 8.4:-23233465 | None:intergenic |
| GGTGAGGTCTTGAGTTAGGA+TGG | 0.578230 | 8.4:-23233211 | None:intergenic |
| AGTTAGGATGGTCTGAGCAA+TGG | 0.584206 | 8.4:-23233199 | None:intergenic |
| AGCACAGCTTGGAAGAGGAG+GGG | 0.586218 | 8.4:+23234837 | MS.gene71931:CDS |
| GGCGGTGACAATACAGAGAT+CGG | 0.590044 | 8.4:-23233364 | None:intergenic |
| TTGTGGTCTAGCATCAGCAT+TGG | 0.596257 | 8.4:+23234556 | MS.gene71931:CDS |
| ACCACCGATCTGCCTTGCAC+CGG | 0.601852 | 8.4:-23233385 | None:intergenic |
| TGAATAATGAGGAGGAACAA+AGG | 0.605881 | 8.4:+23234884 | MS.gene71931:CDS |
| GGGATAGTTCAGTGGCATTG+TGG | 0.607315 | 8.4:+23234539 | MS.gene71931:CDS |
| CAATGTGCACATGAATAATG+AGG | 0.607609 | 8.4:+23234873 | MS.gene71931:CDS |
| CTAGGCTTAATCTTCTTCAG+AGG | 0.607829 | 8.4:+23233412 | MS.gene71931:CDS |
| GCCAGCCACCGAGTACCCAA+TGG | 0.611646 | 8.4:-23234710 | None:intergenic |
| CGGAGGAGTTGATCTTAACA+CGG | 0.616884 | 8.4:-23233317 | None:intergenic |
| GCCGGTGCAAGGCAGATCGG+TGG | 0.633288 | 8.4:+23233384 | MS.gene71931:CDS |
| AGTTGATCTTAACACGGGGA+AGG | 0.633694 | 8.4:-23233311 | None:intergenic |
| GTTCCATTATTAGGGACCAA+AGG | 0.633706 | 8.4:+23234740 | MS.gene71931:CDS |
| AGCAGTAACGGAGTATTCAA+CGG | 0.634943 | 8.4:-23233337 | None:intergenic |
| GATGTAGGTAAGAACATCAA+CGG | 0.637519 | 8.4:-23233514 | None:intergenic |
| GGAGGAGTTGATCTTAACAC+GGG | 0.638442 | 8.4:-23233316 | None:intergenic |
| GATCTCTGTATTGTCACCGC+CGG | 0.642113 | 8.4:+23233366 | MS.gene71931:CDS |
| CGATGACGAGCTCGTCGGTG+AGG | 0.651455 | 8.4:-23233227 | None:intergenic |
| AACAAACCCGACAAACTCCG+CGG | 0.654627 | 8.4:+23233255 | MS.gene71931:CDS |
| GGCGAGTAACGAGCCAAAGG+GGG | 0.657545 | 8.4:-23233462 | None:intergenic |
| CCTGGAGGTGATCAGCAATG+AGG | 0.659064 | 8.4:-23233614 | None:intergenic |
| ATGCATAGTAGGGGAGCACG+GGG | 0.668532 | 8.4:+23234519 | MS.gene71931:CDS |
| TTGGGCCATTGGGTACTCGG+TGG | 0.669464 | 8.4:+23234705 | MS.gene71931:CDS |
| CGGCGAGTAACGAGCCAAAG+GGG | 0.669624 | 8.4:-23233463 | None:intergenic |
| CCTTAGCCAAAACAGACACA+GGG | 0.678012 | 8.4:-23234771 | None:intergenic |
| GTCGACGATGACGAGCTCGT+CGG | 0.681636 | 8.4:-23233232 | None:intergenic |
| TGTGCACATGAATAATGAGG+AGG | 0.692647 | 8.4:+23234876 | MS.gene71931:CDS |
| GGAGCACGGGGATAGTTCAG+TGG | 0.698387 | 8.4:+23234531 | MS.gene71931:CDS |
| CATCCTGAGCGTTGACCTGG+AGG | 0.703641 | 8.4:-23233629 | None:intergenic |
| GGTGCAGGCATGCATAGTAG+GGG | 0.709667 | 8.4:+23234510 | MS.gene71931:intron |
| GAAGATCAAGCATCTCGCCG+CGG | 0.743598 | 8.4:-23233272 | None:intergenic |
| AGTAACGGAGTATTCAACGG+AGG | 0.760315 | 8.4:-23233334 | None:intergenic |
| GAGGAGTTGATCTTAACACG+GGG | 0.771491 | 8.4:-23233315 | None:intergenic |
| TGTAGGTAAGAACATCAACG+GGG | 0.839564 | 8.4:-23233512 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGTAAATATGAGACAAT+TGG | - | chr8.4:23234353-23234372 | None:intergenic | 20.0% |
| !!! | AATTTTCATTTCGTGTAATT+TGG | + | chr8.4:23234325-23234344 | MS.gene71931:intron | 20.0% |
| !!! | ATTTTCATTTCGTGTAATTT+GGG | + | chr8.4:23234326-23234345 | MS.gene71931:intron | 20.0% |
| !!! | TTATTTTCATGATGATATGT+TGG | + | chr8.4:23233723-23233742 | MS.gene71931:intron | 20.0% |
| !!! | TTCAAATGTTTTTGAAGTAA+TGG | + | chr8.4:23234105-23234124 | MS.gene71931:intron | 20.0% |
| ! | AACTTATGTTGATCTCTATT+CGG | - | chr8.4:23234186-23234205 | None:intergenic | 25.0% |
| ! | GTCAAATTACAAATTAGTTC+CGG | + | chr8.4:23233830-23233849 | MS.gene71931:intron | 25.0% |
| ! | GTTTATTCACTCTTAATTCA+GGG | + | chr8.4:23234390-23234409 | MS.gene71931:intron | 25.0% |
| ! | TGTTTATTCACTCTTAATTC+AGG | + | chr8.4:23234389-23234408 | MS.gene71931:intron | 25.0% |
| ! | TTTATTCACTCTTAATTCAG+GGG | + | chr8.4:23234391-23234410 | MS.gene71931:intron | 25.0% |
| !! | AGTGTGAAATAAAGTGTTAT+TGG | + | chr8.4:23234489-23234508 | MS.gene71931:intron | 25.0% |
| !! | TCTAAAATTTCTACTCCAAA+AGG | - | chr8.4:23233917-23233936 | None:intergenic | 25.0% |
| !!! | AATTACTATTTTTGAGCTCT+AGG | + | chr8.4:23233791-23233810 | MS.gene71931:intron | 25.0% |
| !!! | ATTACTATTTTTGAGCTCTA+GGG | + | chr8.4:23233792-23233811 | MS.gene71931:intron | 25.0% |
| !!! | TTGGATGAATATTTTTGACT+GGG | + | chr8.4:23233742-23233761 | MS.gene71931:intron | 25.0% |
| ATATCAATACATAGTGTCTC+CGG | - | chr8.4:23233852-23233871 | None:intergenic | 30.0% | |
| GTCTCATATTTACAATTTCG+AGG | + | chr8.4:23234356-23234375 | MS.gene71931:intron | 30.0% | |
| GTTCTATTAAACTGACAGAA+TGG | + | chr8.4:23234268-23234287 | MS.gene71931:intron | 30.0% | |
| TATGAAGTCATCAGTCTAAA+AGG | + | chr8.4:23234673-23234692 | MS.gene71931:CDS | 30.0% | |
| TCTAAAAGGTTACACTTCTT+GGG | + | chr8.4:23234687-23234706 | MS.gene71931:CDS | 30.0% | |
| TTCACTATAGAAAGTGAGAA+AGG | + | chr8.4:23234462-23234481 | MS.gene71931:intron | 30.0% | |
| ! | AAATAAAGTGTTATTGGTGC+AGG | + | chr8.4:23234495-23234514 | MS.gene71931:intron | 30.0% |
| ! | ATTGACGATCTTTAAGTTCA+AGG | + | chr8.4:23234299-23234318 | MS.gene71931:intron | 30.0% |
| ! | TCGGTTTGACATAAAAACAA+GGG | + | chr8.4:23233974-23233993 | MS.gene71931:intron | 30.0% |
| ! | TGTTGTTTAGTTTCATGAAC+TGG | - | chr8.4:23234153-23234172 | None:intergenic | 30.0% |
| !! | GTTGGATGAATATTTTTGAC+TGG | + | chr8.4:23233741-23233760 | MS.gene71931:intron | 30.0% |
| !! | GTTGTTTCTCCAAAAAACTA+AGG | - | chr8.4:23234594-23234613 | None:intergenic | 30.0% |
| !!! | TATTCCTGTCCTTAGTTTTT+TGG | + | chr8.4:23234582-23234601 | MS.gene71931:CDS | 30.0% |
| !!! | TTTTGAAGTAATGGTCCATT+GGG | + | chr8.4:23234114-23234133 | MS.gene71931:intron | 30.0% |
| !!! | TTTTTGAAGTAATGGTCCAT+TGG | + | chr8.4:23234113-23234132 | MS.gene71931:intron | 30.0% |
| AAACCGAGATGAATCCAAAT+TGG | - | chr8.4:23233589-23233608 | None:intergenic | 35.0% | |
| ATGTAGGTAAGAACATCAAC+GGG | - | chr8.4:23233516-23233535 | None:intergenic | 35.0% | |
| ATTTGGATTCATCTCGGTTT+CGG | + | chr8.4:23233589-23233608 | MS.gene71931:CDS | 35.0% | |
| CAATGTGCACATGAATAATG+AGG | + | chr8.4:23234873-23234892 | MS.gene71931:CDS | 35.0% | |
| CTCACTTTCTATAGTGAACA+CGG | - | chr8.4:23234460-23234479 | None:intergenic | 35.0% | |
| CTCATTATTCATGTGCACAT+TGG | - | chr8.4:23234875-23234894 | None:intergenic | 35.0% | |
| GATGTAGGTAAGAACATCAA+CGG | - | chr8.4:23233517-23233536 | None:intergenic | 35.0% | |
| GGATTCTGCTAAAACTATCT+TGG | + | chr8.4:23234912-23234931 | MS.gene71931:CDS | 35.0% | |
| GTACCAATTTGGATTCATCT+CGG | + | chr8.4:23233583-23233602 | MS.gene71931:CDS | 35.0% | |
| GTCTAAAAGGTTACACTTCT+TGG | + | chr8.4:23234686-23234705 | MS.gene71931:CDS | 35.0% | |
| TGAATAATGAGGAGGAACAA+AGG | + | chr8.4:23234884-23234903 | MS.gene71931:CDS | 35.0% | |
| TTCTCCAAAAAACTAAGGAC+AGG | - | chr8.4:23234589-23234608 | None:intergenic | 35.0% | |
| TTCTGCTAAAACTATCTTGG+AGG | + | chr8.4:23234915-23234934 | MS.gene71931:CDS | 35.0% | |
| TTTCCTTTGGTCCCTAATAA+TGG | - | chr8.4:23234746-23234765 | None:intergenic | 35.0% | |
| TTTCTGGGTTTCCTTCTAAT+CGG | + | chr8.4:23233547-23233566 | MS.gene71931:CDS | 35.0% | |
| ! | CAACGATTGAAGACATGTTT+TGG | - | chr8.4:23234075-23234094 | None:intergenic | 35.0% |
| ! | TTTGAAGTAATGGTCCATTG+GGG | + | chr8.4:23234115-23234134 | MS.gene71931:intron | 35.0% |
| !! | GTCGGTTTGACATAAAAACA+AGG | + | chr8.4:23233973-23233992 | MS.gene71931:intron | 35.0% |
| ATGTTCTTACCTACATCGCA+TGG | + | chr8.4:23233520-23233539 | MS.gene71931:CDS | 40.0% | |
| ATTAAGTCATCGTCTCAACG+AGG | - | chr8.4:23233949-23233968 | None:intergenic | 40.0% | |
| CGTTGAGACGATGACTTAAT+TGG | + | chr8.4:23233949-23233968 | MS.gene71931:intron | 40.0% | |
| CTAGGCTTAATCTTCTTCAG+AGG | + | chr8.4:23233412-23233431 | MS.gene71931:CDS | 40.0% | |
| GACGATGACTTAATTGGTGT+CGG | + | chr8.4:23233955-23233974 | MS.gene71931:intron | 40.0% | |
| GTTCCATTATTAGGGACCAA+AGG | + | chr8.4:23234740-23234759 | MS.gene71931:CDS | 40.0% | |
| TGCATATGAGAAAGAAACGC+TGG | + | chr8.4:23234618-23234637 | MS.gene71931:CDS | 40.0% | |
| TGTAGGTAAGAACATCAACG+GGG | - | chr8.4:23233515-23233534 | None:intergenic | 40.0% | |
| TGTGCACATGAATAATGAGG+AGG | + | chr8.4:23234876-23234895 | MS.gene71931:CDS | 40.0% | |
| TTCTGGGTTTCCTTCTAATC+GGG | + | chr8.4:23233548-23233567 | MS.gene71931:CDS | 40.0% | |
| TTTCCTTCTAATCGGGTCAT+CGG | + | chr8.4:23233555-23233574 | MS.gene71931:CDS | 40.0% | |
| ! | AATTCACCCTGTGTCTGTTT+TGG | + | chr8.4:23234765-23234784 | MS.gene71931:CDS | 40.0% |
| ! | ACACAGGGTGAATTTTCCTT+TGG | - | chr8.4:23234759-23234778 | None:intergenic | 40.0% |
| ! | AGCAGTAACGGAGTATTCAA+CGG | - | chr8.4:23233340-23233359 | None:intergenic | 40.0% |
| !!! | GTTTTGGCTAAGGGGTTTTA+TGG | + | chr8.4:23234781-23234800 | MS.gene71931:CDS | 40.0% |
| ACATCGCATGGAAGCTTTCT+GGG | + | chr8.4:23233532-23233551 | MS.gene71931:CDS | 45.0% | |
| ACGATGATCAGAACCGTTTC+CGG | - | chr8.4:23233486-23233505 | None:intergenic | 45.0% | |
| AGAAAGCTTCCATGCGATGT+AGG | - | chr8.4:23233532-23233551 | None:intergenic | 45.0% | |
| AGTTAGGATGGTCTGAGCAA+TGG | - | chr8.4:23233202-23233221 | None:intergenic | 45.0% | |
| AGTTGATCTTAACACGGGGA+AGG | - | chr8.4:23233314-23233333 | None:intergenic | 45.0% | |
| ATGAGGAGGAACAAAGGCTT+AGG | + | chr8.4:23234890-23234909 | MS.gene71931:CDS | 45.0% | |
| CCTTAGCCAAAACAGACACA+GGG | - | chr8.4:23234774-23234793 | None:intergenic | 45.0% | |
| CTCCAAAAGGCAACATACGT+TGG | - | chr8.4:23233904-23233923 | None:intergenic | 45.0% | |
| CTTGGCGCGTTCCATTATTA+GGG | + | chr8.4:23234732-23234751 | MS.gene71931:CDS | 45.0% | |
| GAGGAATCTTTCTCTGTTCC+AGG | + | chr8.4:23233431-23233450 | MS.gene71931:CDS | 45.0% | |
| GGCTGAGACGCTAATCTAAT+TGG | - | chr8.4:23234020-23234039 | None:intergenic | 45.0% | |
| GTTACACTTCTTGGGCCATT+GGG | + | chr8.4:23234695-23234714 | MS.gene71931:CDS | 45.0% | |
| GTTGAATACTCCGTTACTGC+TGG | + | chr8.4:23233339-23233358 | MS.gene71931:CDS | 45.0% | |
| TACATCGCATGGAAGCTTTC+TGG | + | chr8.4:23233531-23233550 | MS.gene71931:CDS | 45.0% | |
| TGAGGAGGAACAAAGGCTTA+GGG | + | chr8.4:23234891-23234910 | MS.gene71931:CDS | 45.0% | |
| TTCCTTCTAATCGGGTCATC+GGG | + | chr8.4:23233556-23233575 | MS.gene71931:CDS | 45.0% | |
| TTGTGGTCTAGCATCAGCAT+TGG | + | chr8.4:23234556-23234575 | MS.gene71931:CDS | 45.0% | |
| ! | AGTAACGGAGTATTCAACGG+AGG | - | chr8.4:23233337-23233356 | None:intergenic | 45.0% |
| ! | CACCAACGTATGTTGCCTTT+TGG | + | chr8.4:23233899-23233918 | MS.gene71931:intron | 45.0% |
| ! | CGGAGGAGTTGATCTTAACA+CGG | - | chr8.4:23233320-23233339 | None:intergenic | 45.0% |
| ! | GAGGAGTTGATCTTAACACG+GGG | - | chr8.4:23233318-23233337 | None:intergenic | 45.0% |
| ! | GGAGGAGTTGATCTTAACAC+GGG | - | chr8.4:23233319-23233338 | None:intergenic | 45.0% |
| !! | GCTAAGGGGTTTTATGGCAT+AGG | + | chr8.4:23234787-23234806 | MS.gene71931:CDS | 45.0% |
| !!! | CCTGTGTCTGTTTTGGCTAA+GGG | + | chr8.4:23234772-23234791 | MS.gene71931:CDS | 45.0% |
| !!! | CTGTGTCTGTTTTGGCTAAG+GGG | + | chr8.4:23234773-23234792 | MS.gene71931:CDS | 45.0% |
| AACAAACCCGACAAACTCCG+CGG | + | chr8.4:23233255-23233274 | MS.gene71931:CDS | 50.0% | |
| CCAGGCAATTATACCCCCTT+TGG | + | chr8.4:23233449-23233468 | MS.gene71931:CDS | 50.0% | |
| CCCTTAGCCAAAACAGACAC+AGG | - | chr8.4:23234775-23234794 | None:intergenic | 50.0% | |
| CTCAGCCATGAGAACGAGAA+GGG | + | chr8.4:23234033-23234052 | MS.gene71931:intron | 50.0% | |
| GATCTCTGTATTGTCACCGC+CGG | + | chr8.4:23233366-23233385 | MS.gene71931:CDS | 50.0% | |
| GCTTGGCGCGTTCCATTATT+AGG | + | chr8.4:23234731-23234750 | MS.gene71931:CDS | 50.0% | |
| GGCAAGTTCTATGTCCCCAA+TGG | - | chr8.4:23234132-23234151 | None:intergenic | 50.0% | |
| GGCGGTGACAATACAGAGAT+CGG | - | chr8.4:23233367-23233386 | None:intergenic | 50.0% | |
| GGGATAGTTCAGTGGCATTG+TGG | + | chr8.4:23234539-23234558 | MS.gene71931:CDS | 50.0% | |
| GGTAAGAACATCAACGGGGT+TGG | - | chr8.4:23233511-23233530 | None:intergenic | 50.0% | |
| GGTGAGGTCTTGAGTTAGGA+TGG | - | chr8.4:23233214-23233233 | None:intergenic | 50.0% | |
| GGTTACACTTCTTGGGCCAT+TGG | + | chr8.4:23234694-23234713 | MS.gene71931:CDS | 50.0% | |
| TCTCAGCCATGAGAACGAGA+AGG | + | chr8.4:23234032-23234051 | MS.gene71931:intron | 50.0% | |
| TGGTGCAGGCATGCATAGTA+GGG | + | chr8.4:23234509-23234528 | MS.gene71931:intron | 50.0% | |
| TGTAGCCCTTCTCGTTCTCA+TGG | - | chr8.4:23234041-23234060 | None:intergenic | 50.0% | |
| TTCTAATCGGGTCATCGGGT+CGG | + | chr8.4:23233560-23233579 | MS.gene71931:CDS | 50.0% | |
| TTCTTGGGCCATTGGGTACT+CGG | + | chr8.4:23234702-23234721 | MS.gene71931:CDS | 50.0% | |
| TTGGAGGTCCAGACTCAGTT+GGG | + | chr8.4:23234931-23234950 | MS.gene71931:CDS | 50.0% | |
| TTGGTGCAGGCATGCATAGT+AGG | + | chr8.4:23234508-23234527 | MS.gene71931:intron | 50.0% | |
| ! | CCAAAGGGGGTATAATTGCC+TGG | - | chr8.4:23233452-23233471 | None:intergenic | 50.0% |
| ! | TGGTCTAGCATCAGCATTGG+TGG | + | chr8.4:23234559-23234578 | MS.gene71931:CDS | 50.0% |
| !!! | CCCTGTGTCTGTTTTGGCTA+AGG | + | chr8.4:23234771-23234790 | MS.gene71931:CDS | 50.0% |
| AGCACAGCTTGGAAGAGGAG+GGG | + | chr8.4:23234837-23234856 | MS.gene71931:CDS | 55.0% | |
| CAGCACAGCTTGGAAGAGGA+GGG | + | chr8.4:23234836-23234855 | MS.gene71931:CDS | 55.0% | |
| CATCGGGTCGGGTACCAATT+TGG | + | chr8.4:23233572-23233591 | MS.gene71931:CDS | 55.0% | |
| CCTCATTGCTGATCACCTCC+AGG | + | chr8.4:23233614-23233633 | MS.gene71931:CDS | 55.0% | |
| CCTGGAGGTGATCAGCAATG+AGG | - | chr8.4:23233617-23233636 | None:intergenic | 55.0% | |
| CGTCGGTGAGGTCTTGAGTT+AGG | - | chr8.4:23233218-23233237 | None:intergenic | 55.0% | |
| CTTGGAGGTCCAGACTCAGT+TGG | + | chr8.4:23234930-23234949 | MS.gene71931:CDS | 55.0% | |
| GAAGATCAAGCATCTCGCCG+CGG | - | chr8.4:23233275-23233294 | None:intergenic | 55.0% | |
| GACCCGATGACCCGATTAGA+AGG | - | chr8.4:23233561-23233580 | None:intergenic | 55.0% | |
| GAGATCGGAGCCAGCAGTAA+CGG | - | chr8.4:23233352-23233371 | None:intergenic | 55.0% | |
| GCATGCATAGTAGGGGAGCA+CGG | + | chr8.4:23234517-23234536 | MS.gene71931:CDS | 55.0% | |
| GGTCAACGCTCAGGATGTTC+AGG | + | chr8.4:23233635-23233654 | MS.gene71931:CDS | 55.0% | |
| GGTGCAGGCATGCATAGTAG+GGG | + | chr8.4:23234510-23234529 | MS.gene71931:intron | 55.0% | |
| TCTAATCGGGTCATCGGGTC+GGG | + | chr8.4:23233561-23233580 | MS.gene71931:CDS | 55.0% | |
| TTGAGCTTGCCAGCACAGCT+TGG | + | chr8.4:23234826-23234845 | MS.gene71931:CDS | 55.0% | |
| TTGCCAGCACAGCTTGGAAG+AGG | + | chr8.4:23234832-23234851 | MS.gene71931:CDS | 55.0% | |
| ! | ATGCATAGTAGGGGAGCACG+GGG | + | chr8.4:23234519-23234538 | MS.gene71931:CDS | 55.0% |
| ! | CATGCATAGTAGGGGAGCAC+GGG | + | chr8.4:23234518-23234537 | MS.gene71931:CDS | 55.0% |
| !! | GAACATCCTGAGCGTTGACC+TGG | - | chr8.4:23233635-23233654 | None:intergenic | 55.0% |
| ACCACCGATCTGCCTTGCAC+CGG | - | chr8.4:23233388-23233407 | None:intergenic | 60.0% | |
| ATCTCGCCGCGGAGTTTGTC+GGG | - | chr8.4:23233264-23233283 | None:intergenic | 60.0% | |
| CATCTCGCCGCGGAGTTTGT+CGG | - | chr8.4:23233265-23233284 | None:intergenic | 60.0% | |
| CCAGCACAGCTTGGAAGAGG+AGG | + | chr8.4:23234835-23234854 | MS.gene71931:CDS | 60.0% | |
| CCGGCGAGTAACGAGCCAAA+GGG | - | chr8.4:23233467-23233486 | None:intergenic | 60.0% | |
| CCTCCTCTTCCAAGCTGTGC+TGG | - | chr8.4:23234838-23234857 | None:intergenic | 60.0% | |
| CGGCGAGTAACGAGCCAAAG+GGG | - | chr8.4:23233466-23233485 | None:intergenic | 60.0% | |
| GGAGCACGGGGATAGTTCAG+TGG | + | chr8.4:23234531-23234550 | MS.gene71931:CDS | 60.0% | |
| GGCAGATCGGTGGTGAGTCT+AGG | + | chr8.4:23233394-23233413 | MS.gene71931:CDS | 60.0% | |
| GGCGAGTAACGAGCCAAAGG+GGG | - | chr8.4:23233465-23233484 | None:intergenic | 60.0% | |
| GGCTCGTTACTCGCCGGAAA+CGG | + | chr8.4:23233470-23233489 | MS.gene71931:CDS | 60.0% | |
| GTATTGTCACCGCCGGTGCA+AGG | + | chr8.4:23233373-23233392 | MS.gene71931:CDS | 60.0% | |
| GTCGACGATGACGAGCTCGT+CGG | - | chr8.4:23233235-23233254 | None:intergenic | 60.0% | |
| TCACCTCCAGGTCAACGCTC+AGG | + | chr8.4:23233626-23233645 | MS.gene71931:CDS | 60.0% | |
| TCCGGCGAGTAACGAGCCAA+AGG | - | chr8.4:23233468-23233487 | None:intergenic | 60.0% | |
| TTGGGCCATTGGGTACTCGG+TGG | + | chr8.4:23234705-23234724 | MS.gene71931:CDS | 60.0% | |
| ! | CCCTTTGGCTCGTTACTCGC+CGG | + | chr8.4:23233464-23233483 | MS.gene71931:CDS | 60.0% |
| !! | CATCCTGAGCGTTGACCTGG+AGG | - | chr8.4:23233632-23233651 | None:intergenic | 60.0% |
| !! | CTTGGAAGAGGAGGGGTGCT+TGG | + | chr8.4:23234844-23234863 | MS.gene71931:CDS | 60.0% |
| ACCGATCTGCCTTGCACCGG+CGG | - | chr8.4:23233385-23233404 | None:intergenic | 65.0% | |
| ACCGCCGGTGCAAGGCAGAT+CGG | + | chr8.4:23233381-23233400 | MS.gene71931:CDS | 65.0% | |
| CGATGACGAGCTCGTCGGTG+AGG | - | chr8.4:23233230-23233249 | None:intergenic | 65.0% | |
| GCCAGCCACCGAGTACCCAA+TGG | - | chr8.4:23234713-23234732 | None:intergenic | 65.0% | |
| ! | GCCATTGGGTACTCGGTGGC+TGG | + | chr8.4:23234709-23234728 | MS.gene71931:CDS | 65.0% |
| ! | TGGGTACTCGGTGGCTGGCT+TGG | + | chr8.4:23234714-23234733 | MS.gene71931:CDS | 65.0% |
| GCCGGTGCAAGGCAGATCGG+TGG | + | chr8.4:23233384-23233403 | MS.gene71931:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 23233195 | 23234960 | 23233195 | ID=MS.gene71931 |
| chr8.4 | mRNA | 23233195 | 23234960 | 23233195 | ID=MS.gene71931.t1;Parent=MS.gene71931 |
| chr8.4 | exon | 23233195 | 23233656 | 23233195 | ID=MS.gene71931.t1.exon1;Parent=MS.gene71931.t1 |
| chr8.4 | CDS | 23233195 | 23233656 | 23233195 | ID=cds.MS.gene71931.t1;Parent=MS.gene71931.t1 |
| chr8.4 | exon | 23234517 | 23234960 | 23234517 | ID=MS.gene71931.t1.exon2;Parent=MS.gene71931.t1 |
| chr8.4 | CDS | 23234517 | 23234960 | 23234517 | ID=cds.MS.gene71931.t1;Parent=MS.gene71931.t1 |
| Gene Sequence |
| Protein sequence |
