Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72290.t1 | XP_024638513.1 | 95.4 | 196 | 7 | 1 | 1 | 194 | 180 | 375 | 6.70E-90 | 340.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72290.t1 | A0A396IGD0 | 95.4 | 196 | 7 | 1 | 1 | 194 | 180 | 375 | 4.8e-90 | 340.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04918 | MS.gene72290 | 0.804289 | 2.32E-49 | -1.69E-46 |
| MS.gene049419 | MS.gene72290 | -0.804918 | 1.72E-49 | -1.69E-46 |
| MS.gene049499 | MS.gene72290 | 0.804377 | 2.22E-49 | -1.69E-46 |
| MS.gene049680 | MS.gene72290 | 0.803598 | 3.23E-49 | -1.69E-46 |
| MS.gene049983 | MS.gene72290 | 0.834427 | 3.02E-56 | -1.69E-46 |
| MS.gene050384 | MS.gene72290 | 0.814966 | 1.18E-51 | -1.69E-46 |
| MS.gene050386 | MS.gene72290 | 0.817069 | 3.99E-52 | -1.69E-46 |
| MS.gene051003 | MS.gene72290 | 0.816438 | 5.53E-52 | -1.69E-46 |
| MS.gene051452 | MS.gene72290 | 0.820872 | 5.45E-53 | -1.69E-46 |
| MS.gene051597 | MS.gene72290 | 0.808823 | 2.56E-50 | -1.69E-46 |
| MS.gene052519 | MS.gene72290 | 0.80016 | 1.64E-48 | -1.69E-46 |
| MS.gene052954 | MS.gene72290 | 0.800704 | 1.27E-48 | -1.69E-46 |
| MS.gene053006 | MS.gene72290 | 0.833583 | 4.91E-56 | -1.69E-46 |
| MS.gene053008 | MS.gene72290 | 0.813741 | 2.19E-51 | -1.69E-46 |
| MS.gene053931 | MS.gene72290 | 0.827923 | 1.20E-54 | -1.69E-46 |
| MS.gene056699 | MS.gene72290 | 0.800925 | 1.15E-48 | -1.69E-46 |
| MS.gene057208 | MS.gene72290 | 0.833575 | 4.93E-56 | -1.69E-46 |
| MS.gene057392 | MS.gene72290 | 0.81451 | 1.49E-51 | -1.69E-46 |
| MS.gene05781 | MS.gene72290 | 0.806532 | 7.86E-50 | -1.69E-46 |
| MS.gene058008 | MS.gene72290 | 0.827527 | 1.49E-54 | -1.69E-46 |
| MS.gene058009 | MS.gene72290 | 0.835146 | 1.99E-56 | -1.69E-46 |
| MS.gene058088 | MS.gene72290 | 0.80155 | 8.54E-49 | -1.69E-46 |
| MS.gene058781 | MS.gene72290 | 0.837186 | 6.03E-57 | -1.69E-46 |
| MS.gene058783 | MS.gene72290 | 0.860695 | 1.73E-63 | -1.69E-46 |
| MS.gene058979 | MS.gene72290 | 0.805471 | 1.31E-49 | -1.69E-46 |
| MS.gene059146 | MS.gene72290 | 0.815037 | 1.13E-51 | -1.69E-46 |
| MS.gene05952 | MS.gene72290 | 0.809641 | 1.71E-50 | -1.69E-46 |
| MS.gene060322 | MS.gene72290 | 0.816656 | 4.94E-52 | -1.69E-46 |
| MS.gene060527 | MS.gene72290 | 0.802254 | 6.12E-49 | -1.69E-46 |
| MS.gene060935 | MS.gene72290 | 0.855719 | 5.22E-62 | -1.69E-46 |
| MS.gene060937 | MS.gene72290 | 0.839069 | 1.98E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 69 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATTTCGGCCATGCCTTCC+TGG | 0.280268 | 8.2:+21423098 | None:intergenic |
| GGAGAAGATCAGACATTTGC+AGG | 0.337554 | 8.2:-21425013 | MS.gene72290:CDS |
| AGGTTGGCTGCTTCCTTCAT+TGG | 0.347141 | 8.2:-21423225 | MS.gene72290:CDS |
| GGTGGACAAGCTGGGCAGGC+TGG | 0.358776 | 8.2:-21423254 | MS.gene72290:CDS |
| GGCAGGCTGGGCAAGGAGGT+TGG | 0.363254 | 8.2:-21423241 | MS.gene72290:CDS |
| AAAGCTTACTCCGTCACTTC+CGG | 0.378183 | 8.2:+21424864 | None:intergenic |
| GCTAGCCATGGTGGACAAGC+TGG | 0.383190 | 8.2:-21423263 | MS.gene72290:CDS |
| CAACAGTAGAAAATTAATTT+CGG | 0.387577 | 8.2:+21423084 | None:intergenic |
| CCATGGTGGACAAGCTGGGC+AGG | 0.417626 | 8.2:-21423258 | MS.gene72290:CDS |
| GTGGACAAGCTGGGCAGGCT+GGG | 0.421167 | 8.2:-21423253 | MS.gene72290:CDS |
| GAAGTATAATATGCTCCATT+TGG | 0.424591 | 8.2:+21424904 | None:intergenic |
| CTCTGGAAACTGCGAGTTTG+AGG | 0.428118 | 8.2:+21424949 | None:intergenic |
| CATAGCTGACTGTGGAGCTC+TGG | 0.438658 | 8.2:+21424932 | None:intergenic |
| CAAGCTGGGCAGGCTGGGCA+AGG | 0.441828 | 8.2:-21423248 | MS.gene72290:CDS |
| GTCAGCTATGGTGGACCAAA+TGG | 0.470607 | 8.2:-21424919 | MS.gene72290:CDS |
| AATTTCGGCCATGCCTTCCT+GGG | 0.476935 | 8.2:+21423099 | None:intergenic |
| AAAGGACAGATTCAAATGGC+AGG | 0.485013 | 8.2:-21423133 | MS.gene72290:CDS |
| TAGCTGGCTTTGAAGAAGAA+TGG | 0.489121 | 8.2:-21424352 | MS.gene72290:CDS |
| CCAATACTCCCGCTCCATCC+AGG | 0.497687 | 8.2:+21424305 | None:intergenic |
| AAAACTTAATCCAGATGGTA+AGG | 0.501159 | 8.2:-21424541 | MS.gene72290:CDS |
| AAGAGGATACCTTGTCATGC+AGG | 0.503750 | 8.2:+21424699 | None:intergenic |
| ACCCACCTTACCTCCAACTT+CGG | 0.510156 | 8.2:+21423178 | None:intergenic |
| GTCAAAAGTATTTGCCTGGA+TGG | 0.514197 | 8.2:-21424319 | MS.gene72290:CDS |
| ATAGTATCCACCTTACCATC+TGG | 0.517490 | 8.2:+21424531 | None:intergenic |
| AAGGGTCAAAAGTATTTGCC+TGG | 0.518868 | 8.2:-21424323 | MS.gene72290:CDS |
| CCTGTGAGAATGTCCGAAGT+TGG | 0.528124 | 8.2:-21423191 | MS.gene72290:CDS |
| TTCTTCTCGTGCTGAAGAGA+AGG | 0.528407 | 8.2:-21423156 | MS.gene72290:CDS |
| CTAGCCATGGTGGACAAGCT+GGG | 0.531122 | 8.2:-21423262 | MS.gene72290:CDS |
| TCAAGAAAACTTAATCCAGA+TGG | 0.533359 | 8.2:-21424546 | MS.gene72290:CDS |
| CCTGGATGGAGCGGGAGTAT+TGG | 0.534924 | 8.2:-21424305 | MS.gene72290:intron |
| AGTATTTGCCTGGATGGAGC+GGG | 0.539807 | 8.2:-21424313 | MS.gene72290:CDS |
| GTCCGAAGTTGGAGGTAAGG+TGG | 0.541687 | 8.2:-21423180 | MS.gene72290:CDS |
| AAGGAAAGGACAGATTCAAA+TGG | 0.545943 | 8.2:-21423137 | MS.gene72290:CDS |
| ACTTTGCACAACATCAATGA+AGG | 0.548473 | 8.2:-21424504 | MS.gene72290:intron |
| CAGAGCTCCACAGTCAGCTA+TGG | 0.549244 | 8.2:-21424931 | MS.gene72290:CDS |
| AATGTCCGAAGTTGGAGGTA+AGG | 0.549381 | 8.2:-21423183 | MS.gene72290:CDS |
| CCTGCCCAGCTTGTCCACCA+TGG | 0.556673 | 8.2:+21423258 | None:intergenic |
| AGCTCCACAGTCAGCTATGG+TGG | 0.556679 | 8.2:-21424928 | MS.gene72290:CDS |
| GGATGACTGTGCTCCAATGA+AGG | 0.563386 | 8.2:+21423212 | None:intergenic |
| AAGGACAGATTCAAATGGCA+GGG | 0.565748 | 8.2:-21423132 | MS.gene72290:CDS |
| GCTTTGAAGAAGAATGGAAA+GGG | 0.568893 | 8.2:-21424346 | MS.gene72290:CDS |
| AAGTATTTGCCTGGATGGAG+CGG | 0.571644 | 8.2:-21424314 | MS.gene72290:CDS |
| GCATACCACCCAGGAAGGCA+TGG | 0.573963 | 8.2:-21423107 | MS.gene72290:CDS |
| GCTGGGCAGGCTGGGCAAGG+AGG | 0.578573 | 8.2:-21423245 | MS.gene72290:CDS |
| TTCTAGAGGCCTGCATGACA+AGG | 0.581951 | 8.2:-21424708 | MS.gene72290:intron |
| ACAAGGAGGACCGGAAGTGA+CGG | 0.587602 | 8.2:-21424874 | MS.gene72290:CDS |
| GGTGACACTTGAGGAGAGCA+AGG | 0.591199 | 8.2:-21424768 | MS.gene72290:CDS |
| CTCGTGCTGAAGAGAAGGAA+AGG | 0.592713 | 8.2:-21423151 | MS.gene72290:CDS |
| TTCGGCCATGCCTTCCTGGG+TGG | 0.594518 | 8.2:+21423102 | None:intergenic |
| CCAACTTCGGACATTCTCAC+AGG | 0.596498 | 8.2:+21423191 | None:intergenic |
| TCCGAAGTTGGAGGTAAGGT+GGG | 0.596962 | 8.2:-21423179 | MS.gene72290:CDS |
| TCATCAAAGACAAGGAGGAC+CGG | 0.605585 | 8.2:-21424883 | MS.gene72290:CDS |
| TGAAGAAGAATGGAAAGGGA+AGG | 0.611158 | 8.2:-21424342 | MS.gene72290:CDS |
| GGCTTTGAAGAAGAATGGAA+AGG | 0.613021 | 8.2:-21424347 | MS.gene72290:CDS |
| GGGGTGCATACCACCCAGGA+AGG | 0.618402 | 8.2:-21423112 | MS.gene72290:CDS |
| GTGAGAATGTCCGAAGTTGG+AGG | 0.621493 | 8.2:-21423188 | MS.gene72290:CDS |
| AGGACAGATTCAAATGGCAG+GGG | 0.624927 | 8.2:-21423131 | MS.gene72290:CDS |
| ACTTAATCCAGATGGTAAGG+TGG | 0.628756 | 8.2:-21424538 | MS.gene72290:CDS |
| GAAGAAGAATGGAAAGGGAA+GGG | 0.632258 | 8.2:-21424341 | MS.gene72290:CDS |
| GAGAAGATCAGACATTTGCA+GGG | 0.640119 | 8.2:-21425012 | MS.gene72290:CDS |
| GGCAGGGGTGCATACCACCC+AGG | 0.649462 | 8.2:-21423116 | MS.gene72290:CDS |
| GCTTCTCACAGAATTTCTAG+AGG | 0.651279 | 8.2:-21424722 | MS.gene72290:CDS |
| TGGTCCACCATAGCTGACTG+TGG | 0.666212 | 8.2:+21424924 | None:intergenic |
| ATTATACTTCATCAAAGACA+AGG | 0.695492 | 8.2:-21424891 | MS.gene72290:CDS |
| ATTGTGTTAGGTGACACTTG+AGG | 0.706323 | 8.2:-21424777 | MS.gene72290:intron |
| GACACTTGAGGAGAGCAAGG+AGG | 0.716676 | 8.2:-21424765 | MS.gene72290:CDS |
| AGGAGGCTGATACTTCCACA+AGG | 0.736546 | 8.2:-21424748 | MS.gene72290:CDS |
| TCTGTGAGAAGCTTGCCTTG+TGG | 0.745557 | 8.2:+21424733 | None:intergenic |
| ATACTTCATCAAAGACAAGG+AGG | 0.753490 | 8.2:-21424888 | MS.gene72290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATGATAAATTATGATTA+GGG | - | chr8.2:21424590-21424609 | MS.gene72290:intron | 10.0% |
| !! | TTAAATGATAAATTATGATT+AGG | - | chr8.2:21424589-21424608 | MS.gene72290:intron | 10.0% |
| !! | AAATGATAAATTATGATTAG+GGG | - | chr8.2:21424591-21424610 | MS.gene72290:intron | 15.0% |
| !! | AAGTAAATTCAATTAAAGTA+AGG | + | chr8.2:21423514-21423533 | None:intergenic | 15.0% |
| !! | ATATTAATTATAACTTCTCA+TGG | - | chr8.2:21424300-21424319 | MS.gene72290:intron | 15.0% |
| !! | TATTAATTATAACTTCTCAT+GGG | - | chr8.2:21424301-21424320 | MS.gene72290:intron | 15.0% |
| !!! | ACTTTTATCTAATATTTTGT+AGG | - | chr8.2:21423530-21423549 | MS.gene72290:intron | 15.0% |
| !!! | CTTTTATCTAATATTTTGTA+GGG | - | chr8.2:21423531-21423550 | MS.gene72290:intron | 15.0% |
| !!! | TTTTATCTAATATTTTGTAG+GGG | - | chr8.2:21423532-21423551 | MS.gene72290:intron | 15.0% |
| !! | AGATACATTGTAACATAAAA+CGG | + | chr8.2:21424154-21424173 | None:intergenic | 20.0% |
| !! | ATAGTAATATATACATGATG+TGG | - | chr8.2:21424614-21424633 | MS.gene72290:intron | 20.0% |
| !! | ATTAATTATAACTTCTCATG+GGG | - | chr8.2:21424302-21424321 | MS.gene72290:intron | 20.0% |
| !! | GGAAATTTGGAAATAAAAAA+TGG | + | chr8.2:21424670-21424689 | None:intergenic | 20.0% |
| !! | TAGTAATATATACATGATGT+GGG | - | chr8.2:21424615-21424634 | MS.gene72290:intron | 20.0% |
| !! | TTATGTATATGGTATTATGT+GGG | - | chr8.2:21424754-21424773 | MS.gene72290:CDS | 20.0% |
| !! | TTTATGTAAAAAAATGAGAC+AGG | + | chr8.2:21424691-21424710 | None:intergenic | 20.0% |
| !!! | AGTTTTTTTTCTTCTTTTTC+TGG | - | chr8.2:21423646-21423665 | MS.gene72290:intron | 20.0% |
| !!! | TAAACTATTTTCTGAGATTA+AGG | + | chr8.2:21424647-21424666 | None:intergenic | 20.0% |
| !!! | TCTCTTTATTATTGACTAAT+GGG | - | chr8.2:21424446-21424465 | MS.gene72290:intron | 20.0% |
| !!! | TTCTCTTTATTATTGACTAA+TGG | - | chr8.2:21424445-21424464 | MS.gene72290:intron | 20.0% |
| ! | AAAAAATGAGACAGGAAATT+TGG | + | chr8.2:21424683-21424702 | None:intergenic | 25.0% |
| ! | AATAATAAAGAGAATGAGCT+AGG | + | chr8.2:21424439-21424458 | None:intergenic | 25.0% |
| ! | AATAGATGTGTGAAAATATG+TGG | + | chr8.2:21424269-21424288 | None:intergenic | 25.0% |
| ! | ACAGGTTAAAATGATTCAAA+TGG | + | chr8.2:21424808-21424827 | None:intergenic | 25.0% |
| ! | ACTTGAATACTTGAAATACA+AGG | - | chr8.2:21424008-21424027 | MS.gene72290:intron | 25.0% |
| ! | ATACATTGTAACATAAAACG+GGG | + | chr8.2:21424152-21424171 | None:intergenic | 25.0% |
| ! | ATTATACTTCATCAAAGACA+AGG | - | chr8.2:21423219-21423238 | MS.gene72290:CDS | 25.0% |
| ! | CTCTGATTAATTGAGAAATA+TGG | - | chr8.2:21423835-21423854 | MS.gene72290:intron | 25.0% |
| ! | GATACATTGTAACATAAAAC+GGG | + | chr8.2:21424153-21424172 | None:intergenic | 25.0% |
| ! | GTTATGTATATGGTATTATG+TGG | - | chr8.2:21424753-21424772 | MS.gene72290:CDS | 25.0% |
| ! | TAAACTGCGCTAAAAAAATT+TGG | + | chr8.2:21424562-21424581 | None:intergenic | 25.0% |
| ! | TCTTTCGTTAAACTGATTAT+TGG | + | chr8.2:21424125-21424144 | None:intergenic | 25.0% |
| ! | TTGTAACATATATCATCACT+CGG | + | chr8.2:21424050-21424069 | None:intergenic | 25.0% |
| ! | TTTATGTTACAATGTATCTG+TGG | - | chr8.2:21424155-21424174 | MS.gene72290:intron | 25.0% |
| !! | TGGATTAAGTTTTCTTGAAA+GGG | + | chr8.2:21423562-21423581 | None:intergenic | 25.0% |
| !!! | GATATTATATTGAGTTGGTT+TGG | - | chr8.2:21423441-21423460 | MS.gene72290:intron | 25.0% |
| !!! | TTTTTGGCACAAGTATATAA+AGG | + | chr8.2:21423915-21423934 | None:intergenic | 25.0% |
| !!! | TTTTTTTCTTCTTTTTCTGG+TGG | - | chr8.2:21423649-21423668 | MS.gene72290:intron | 25.0% |
| AAAACTTAATCCAGATGGTA+AGG | - | chr8.2:21423569-21423588 | MS.gene72290:intron | 30.0% | |
| ATATAATATCGCTACCAAAG+AGG | + | chr8.2:21423431-21423450 | None:intergenic | 30.0% | |
| ATTCAATTAAAGTAAGGACG+TGG | + | chr8.2:21423508-21423527 | None:intergenic | 30.0% | |
| CCTAAAACATAAACAAGAAC+AGG | + | chr8.2:21424826-21424845 | None:intergenic | 30.0% | |
| GAAGTATAATATGCTCCATT+TGG | + | chr8.2:21423209-21423228 | None:intergenic | 30.0% | |
| GTAGCGATATTATATTGAGT+TGG | - | chr8.2:21423436-21423455 | MS.gene72290:intron | 30.0% | |
| TCAAGAAAACTTAATCCAGA+TGG | - | chr8.2:21423564-21423583 | MS.gene72290:intron | 30.0% | |
| TGAAAAATTGCAATACTGCA+TGG | + | chr8.2:21424101-21424120 | None:intergenic | 30.0% | |
| TTGTGAAATCGTTATCATGT+TGG | - | chr8.2:21424351-21424370 | MS.gene72290:CDS | 30.0% | |
| TTTACAGCTAGACTAAATCA+AGG | - | chr8.2:21423277-21423296 | MS.gene72290:intron | 30.0% | |
| ! | ACTAACTTCACAGAACTTTT+TGG | + | chr8.2:21423931-21423950 | None:intergenic | 30.0% |
| ! | CTGGATTAAGTTTTCTTGAA+AGG | + | chr8.2:21423563-21423582 | None:intergenic | 30.0% |
| ! | TGATAACGATTTCACAACAA+TGG | + | chr8.2:21424348-21424367 | None:intergenic | 30.0% |
| ! | TTATTGACTAATGGGAAGTA+AGG | - | chr8.2:21424454-21424473 | MS.gene72290:intron | 30.0% |
| !! | CCTGTTCTTGTTTATGTTTT+AGG | - | chr8.2:21424823-21424842 | MS.gene72290:intron | 30.0% |
| !! | TTTTGCTGTGTTTCTTTTAG+TGG | - | chr8.2:21423476-21423495 | MS.gene72290:intron | 30.0% |
| !!! | ATATTGAGTTGGTTTGGTTT+TGG | - | chr8.2:21423447-21423466 | MS.gene72290:intron | 30.0% |
| !!! | TATTGAGTTGGTTTGGTTTT+GGG | - | chr8.2:21423448-21423467 | MS.gene72290:intron | 30.0% |
| AAAAAAACTGCCAACACAAC+AGG | + | chr8.2:21424537-21424556 | None:intergenic | 35.0% | |
| AAGGAAAGGACAGATTCAAA+TGG | - | chr8.2:21424973-21424992 | MS.gene72290:CDS | 35.0% | |
| ACTTTGCACAACATCAATGA+AGG | - | chr8.2:21423606-21423625 | MS.gene72290:intron | 35.0% | |
| AGTTGCAGAGAACTGAAATA+GGG | + | chr8.2:21424245-21424264 | None:intergenic | 35.0% | |
| ATACTTCATCAAAGACAAGG+AGG | - | chr8.2:21423222-21423241 | MS.gene72290:CDS | 35.0% | |
| ATTCAATGGTGTAGAGAGTA+TGG | - | chr8.2:21424502-21424521 | MS.gene72290:intron | 35.0% | |
| CCAATGTAGAATTCAATGTG+TGG | - | chr8.2:21424723-21424742 | MS.gene72290:CDS | 35.0% | |
| CCACACATTGAATTCTACAT+TGG | + | chr8.2:21424726-21424745 | None:intergenic | 35.0% | |
| GATTCCATCTTCATTGTGTT+AGG | - | chr8.2:21423321-21423340 | MS.gene72290:intron | 35.0% | |
| TAGTTGCAGAGAACTGAAAT+AGG | + | chr8.2:21424246-21424265 | None:intergenic | 35.0% | |
| TTGTATGTCAGCATTACTGA+AGG | - | chr8.2:21423707-21423726 | MS.gene72290:intron | 35.0% | |
| !! | GCTTTGAAGAAGAATGGAAA+GGG | - | chr8.2:21423764-21423783 | MS.gene72290:intron | 35.0% |
| AAAGGACAGATTCAAATGGC+AGG | - | chr8.2:21424977-21424996 | MS.gene72290:CDS | 40.0% | |
| AAGGACAGATTCAAATGGCA+GGG | - | chr8.2:21424978-21424997 | MS.gene72290:CDS | 40.0% | |
| AATGGGAAGTAAGGAAACAG+TGG | - | chr8.2:21424463-21424482 | MS.gene72290:intron | 40.0% | |
| ACTTAATCCAGATGGTAAGG+TGG | - | chr8.2:21423572-21423591 | MS.gene72290:intron | 40.0% | |
| ATAGTATCCACCTTACCATC+TGG | + | chr8.2:21423582-21423601 | None:intergenic | 40.0% | |
| ATTGTGTTAGGTGACACTTG+AGG | - | chr8.2:21423333-21423352 | MS.gene72290:intron | 40.0% | |
| GAAGAAGAATGGAAAGGGAA+GGG | - | chr8.2:21423769-21423788 | MS.gene72290:intron | 40.0% | |
| GAGAAGATCAGACATTTGCA+GGG | - | chr8.2:21423098-21423117 | MS.gene72290:CDS | 40.0% | |
| GTCACCTAACACAATGAAGA+TGG | + | chr8.2:21423328-21423347 | None:intergenic | 40.0% | |
| GTTGCAGAGAACTGAAATAG+GGG | + | chr8.2:21424244-21424263 | None:intergenic | 40.0% | |
| TGAAGAAGAATGGAAAGGGA+AGG | - | chr8.2:21423768-21423787 | MS.gene72290:intron | 40.0% | |
| TGGCACACGAGTTATGTATA+TGG | - | chr8.2:21424743-21424762 | MS.gene72290:CDS | 40.0% | |
| TTGCAGAGAACTGAAATAGG+GGG | + | chr8.2:21424243-21424262 | None:intergenic | 40.0% | |
| ! | GCTTCTCACAGAATTTCTAG+AGG | - | chr8.2:21423388-21423407 | MS.gene72290:intron | 40.0% |
| ! | TGGCATACTGCTAACAGTTT+TGG | + | chr8.2:21424788-21424807 | None:intergenic | 40.0% |
| ! | TTTTTCGCAGATCAACTAGC+TGG | - | chr8.2:21423742-21423761 | MS.gene72290:intron | 40.0% |
| !! | AAGGGTCAAAAGTATTTGCC+TGG | - | chr8.2:21423787-21423806 | MS.gene72290:intron | 40.0% |
| !! | GAGAAGTACTGTGCATTCAA+TGG | - | chr8.2:21424488-21424507 | MS.gene72290:intron | 40.0% |
| !! | GGCTTTGAAGAAGAATGGAA+AGG | - | chr8.2:21423763-21423782 | MS.gene72290:intron | 40.0% |
| !! | GTCAAAAGTATTTGCCTGGA+TGG | - | chr8.2:21423791-21423810 | MS.gene72290:intron | 40.0% |
| !! | TAGCTGGCTTTGAAGAAGAA+TGG | - | chr8.2:21423758-21423777 | MS.gene72290:intron | 40.0% |
| !!! | TATGTTTTAGGAGCTAGCCA+TGG | - | chr8.2:21424835-21424854 | MS.gene72290:intron | 40.0% |
| AAAGCTTACTCCGTCACTTC+CGG | + | chr8.2:21423249-21423268 | None:intergenic | 45.0% | |
| AAGAGGATACCTTGTCATGC+AGG | + | chr8.2:21423414-21423433 | None:intergenic | 45.0% | |
| AAGTATTTGCCTGGATGGAG+CGG | - | chr8.2:21423796-21423815 | MS.gene72290:intron | 45.0% | |
| AATGTCCGAAGTTGGAGGTA+AGG | - | chr8.2:21424927-21424946 | MS.gene72290:CDS | 45.0% | |
| AGGACAGATTCAAATGGCAG+GGG | - | chr8.2:21424979-21424998 | MS.gene72290:CDS | 45.0% | |
| GCTTAGTATGCCTGTTGTGT+TGG | - | chr8.2:21424524-21424543 | MS.gene72290:CDS | 45.0% | |
| GGAGAAGATCAGACATTTGC+AGG | - | chr8.2:21423097-21423116 | MS.gene72290:CDS | 45.0% | |
| TCATCAAAGACAAGGAGGAC+CGG | - | chr8.2:21423227-21423246 | MS.gene72290:CDS | 45.0% | |
| TTCTTCTCGTGCTGAAGAGA+AGG | - | chr8.2:21424954-21424973 | MS.gene72290:CDS | 45.0% | |
| ! | GCATGACAAGGTATCCTCTT+TGG | - | chr8.2:21423414-21423433 | MS.gene72290:intron | 45.0% |
| AATTTCGGCCATGCCTTCCT+GGG | + | chr8.2:21425014-21425033 | None:intergenic | 50.0% | |
| ACCCACCTTACCTCCAACTT+CGG | + | chr8.2:21424935-21424954 | None:intergenic | 50.0% | |
| AGGAGGCTGATACTTCCACA+AGG | - | chr8.2:21423362-21423381 | MS.gene72290:intron | 50.0% | |
| AGTATTTGCCTGGATGGAGC+GGG | - | chr8.2:21423797-21423816 | MS.gene72290:intron | 50.0% | |
| CCAACTTCGGACATTCTCAC+AGG | + | chr8.2:21424922-21424941 | None:intergenic | 50.0% | |
| CCTGTGAGAATGTCCGAAGT+TGG | - | chr8.2:21424919-21424938 | MS.gene72290:CDS | 50.0% | |
| CTCGTGCTGAAGAGAAGGAA+AGG | - | chr8.2:21424959-21424978 | MS.gene72290:CDS | 50.0% | |
| GGATGACTGTGCTCCAATGA+AGG | + | chr8.2:21424901-21424920 | None:intergenic | 50.0% | |
| GTGAGAATGTCCGAAGTTGG+AGG | - | chr8.2:21424922-21424941 | MS.gene72290:CDS | 50.0% | |
| TAATTTCGGCCATGCCTTCC+TGG | + | chr8.2:21425015-21425034 | None:intergenic | 50.0% | |
| TCCGAAGTTGGAGGTAAGGT+GGG | - | chr8.2:21424931-21424950 | MS.gene72290:CDS | 50.0% | |
| TCTGTGAGAAGCTTGCCTTG+TGG | + | chr8.2:21423380-21423399 | None:intergenic | 50.0% | |
| ! | AGGTTGGCTGCTTCCTTCAT+TGG | - | chr8.2:21424885-21424904 | MS.gene72290:CDS | 50.0% |
| ! | CTCTGGAAACTGCGAGTTTG+AGG | + | chr8.2:21423164-21423183 | None:intergenic | 50.0% |
| ! | GGAAGGCATGGCCGAAATTA+AGG | - | chr8.2:21425015-21425034 | MS.gene72290:CDS | 50.0% |
| ! | TTCTAGAGGCCTGCATGACA+AGG | - | chr8.2:21423402-21423421 | MS.gene72290:intron | 50.0% |
| !! | GTCAGCTATGGTGGACCAAA+TGG | - | chr8.2:21423191-21423210 | MS.gene72290:CDS | 50.0% |
| !!! | GTTTTAGGAGCTAGCCATGG+TGG | - | chr8.2:21424838-21424857 | MS.gene72290:intron | 50.0% |
| ACAAGGAGGACCGGAAGTGA+CGG | - | chr8.2:21423236-21423255 | MS.gene72290:CDS | 55.0% | |
| AGCTCCACAGTCAGCTATGG+TGG | - | chr8.2:21423182-21423201 | MS.gene72290:CDS | 55.0% | |
| CAGAGCTCCACAGTCAGCTA+TGG | - | chr8.2:21423179-21423198 | MS.gene72290:CDS | 55.0% | |
| CATAGCTGACTGTGGAGCTC+TGG | + | chr8.2:21423181-21423200 | None:intergenic | 55.0% | |
| GACACTTGAGGAGAGCAAGG+AGG | - | chr8.2:21423345-21423364 | MS.gene72290:intron | 55.0% | |
| GGTGACACTTGAGGAGAGCA+AGG | - | chr8.2:21423342-21423361 | MS.gene72290:intron | 55.0% | |
| GTCCGAAGTTGGAGGTAAGG+TGG | - | chr8.2:21424930-21424949 | MS.gene72290:CDS | 55.0% | |
| TGGTCCACCATAGCTGACTG+TGG | + | chr8.2:21423189-21423208 | None:intergenic | 55.0% | |
| !! | CTAGCCATGGTGGACAAGCT+GGG | - | chr8.2:21424848-21424867 | MS.gene72290:intron | 55.0% |
| CCAATACTCCCGCTCCATCC+AGG | + | chr8.2:21423808-21423827 | None:intergenic | 60.0% | |
| GCATACCACCCAGGAAGGCA+TGG | - | chr8.2:21425003-21425022 | MS.gene72290:CDS | 60.0% | |
| ! | CCTGGATGGAGCGGGAGTAT+TGG | - | chr8.2:21423805-21423824 | MS.gene72290:intron | 60.0% |
| !! | GCTAGCCATGGTGGACAAGC+TGG | - | chr8.2:21424847-21424866 | MS.gene72290:intron | 60.0% |
| CCTGCCCAGCTTGTCCACCA+TGG | + | chr8.2:21424855-21424874 | None:intergenic | 65.0% | |
| GGGGTGCATACCACCCAGGA+AGG | - | chr8.2:21424998-21425017 | MS.gene72290:CDS | 65.0% | |
| GTGGACAAGCTGGGCAGGCT+GGG | - | chr8.2:21424857-21424876 | MS.gene72290:intron | 65.0% | |
| TTCGGCCATGCCTTCCTGGG+TGG | + | chr8.2:21425011-21425030 | None:intergenic | 65.0% | |
| !! | CCATGGTGGACAAGCTGGGC+AGG | - | chr8.2:21424852-21424871 | MS.gene72290:intron | 65.0% |
| CAAGCTGGGCAGGCTGGGCA+AGG | - | chr8.2:21424862-21424881 | MS.gene72290:intron | 70.0% | |
| GGCAGGCTGGGCAAGGAGGT+TGG | - | chr8.2:21424869-21424888 | MS.gene72290:intron | 70.0% | |
| GGTGGACAAGCTGGGCAGGC+TGG | - | chr8.2:21424856-21424875 | MS.gene72290:intron | 70.0% | |
| ! | GGCAGGGGTGCATACCACCC+AGG | - | chr8.2:21424994-21425013 | MS.gene72290:CDS | 70.0% |
| GCTGGGCAGGCTGGGCAAGG+AGG | - | chr8.2:21424865-21424884 | MS.gene72290:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 21423097 | 21425035 | 21423097 | ID=MS.gene72290 |
| chr8.2 | mRNA | 21423097 | 21425035 | 21423097 | ID=MS.gene72290.t1;Parent=MS.gene72290 |
| chr8.2 | exon | 21424873 | 21425035 | 21424873 | ID=MS.gene72290.t1.exon1;Parent=MS.gene72290.t1 |
| chr8.2 | CDS | 21424873 | 21425035 | 21424873 | ID=cds.MS.gene72290.t1;Parent=MS.gene72290.t1 |
| chr8.2 | exon | 21424709 | 21424789 | 21424709 | ID=MS.gene72290.t1.exon2;Parent=MS.gene72290.t1 |
| chr8.2 | CDS | 21424709 | 21424789 | 21424709 | ID=cds.MS.gene72290.t1;Parent=MS.gene72290.t1 |
| chr8.2 | exon | 21424505 | 21424580 | 21424505 | ID=MS.gene72290.t1.exon3;Parent=MS.gene72290.t1 |
| chr8.2 | CDS | 21424505 | 21424580 | 21424505 | ID=cds.MS.gene72290.t1;Parent=MS.gene72290.t1 |
| chr8.2 | exon | 21424306 | 21424380 | 21424306 | ID=MS.gene72290.t1.exon4;Parent=MS.gene72290.t1 |
| chr8.2 | CDS | 21424306 | 21424380 | 21424306 | ID=cds.MS.gene72290.t1;Parent=MS.gene72290.t1 |
| chr8.2 | exon | 21423097 | 21423287 | 21423097 | ID=MS.gene72290.t1.exon5;Parent=MS.gene72290.t1 |
| chr8.2 | CDS | 21423097 | 21423287 | 21423097 | ID=cds.MS.gene72290.t1;Parent=MS.gene72290.t1 |
| Gene Sequence |
| Protein sequence |
