Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058088.t1 | XP_003610817.1 | 98.6 | 146 | 2 | 0 | 2 | 147 | 169 | 314 | 8.60E-73 | 283.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058088.t1 | G7K556 | 98.6 | 146 | 2 | 0 | 2 | 147 | 169 | 314 | 6.2e-73 | 283.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051241 | MS.gene058088 | 0.801509 | 8.71E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene058088 | 0.816017 | 6.87E-52 | -1.69E-46 |
| MS.gene052863 | MS.gene058088 | 0.805278 | 1.44E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene058088 | 0.801543 | 8.57E-49 | -1.69E-46 |
| MS.gene055464 | MS.gene058088 | 0.835415 | 1.70E-56 | -1.69E-46 |
| MS.gene057855 | MS.gene058088 | 0.805369 | 1.38E-49 | -1.69E-46 |
| MS.gene058009 | MS.gene058088 | 0.81921 | 1.31E-52 | -1.69E-46 |
| MS.gene058088 | MS.gene058783 | 0.842306 | 2.80E-58 | -1.69E-46 |
| MS.gene058088 | MS.gene059317 | 0.804661 | 1.94E-49 | -1.69E-46 |
| MS.gene058088 | MS.gene059842 | 0.814979 | 1.17E-51 | -1.69E-46 |
| MS.gene058088 | MS.gene060322 | 0.811259 | 7.66E-51 | -1.69E-46 |
| MS.gene058088 | MS.gene062576 | 0.807141 | 5.84E-50 | -1.69E-46 |
| MS.gene058088 | MS.gene063025 | 0.804715 | 1.89E-49 | -1.69E-46 |
| MS.gene058088 | MS.gene067173 | 0.825686 | 4.09E-54 | -1.69E-46 |
| MS.gene058088 | MS.gene067697 | 0.812635 | 3.84E-51 | -1.69E-46 |
| MS.gene058088 | MS.gene073008 | 0.806168 | 9.38E-50 | -1.69E-46 |
| MS.gene058088 | MS.gene074603 | 0.808874 | 2.50E-50 | -1.69E-46 |
| MS.gene058088 | MS.gene074606 | 0.832954 | 7.04E-56 | -1.69E-46 |
| MS.gene058088 | MS.gene08806 | 0.813225 | 2.85E-51 | -1.69E-46 |
| MS.gene058088 | MS.gene08813 | 0.800086 | 1.70E-48 | -1.69E-46 |
| MS.gene058088 | MS.gene09277 | 0.802143 | 6.45E-49 | -1.69E-46 |
| MS.gene058088 | MS.gene09283 | 0.805486 | 1.30E-49 | -1.69E-46 |
| MS.gene058088 | MS.gene21779 | 0.801932 | 7.13E-49 | -1.69E-46 |
| MS.gene058088 | MS.gene24623 | 0.804444 | 2.15E-49 | -1.69E-46 |
| MS.gene058088 | MS.gene24626 | 0.807506 | 4.89E-50 | -1.69E-46 |
| MS.gene058088 | MS.gene24628 | 0.819235 | 1.29E-52 | -1.69E-46 |
| MS.gene058088 | MS.gene24923 | 0.803818 | 2.91E-49 | -1.69E-46 |
| MS.gene058088 | MS.gene26832 | 0.813722 | 2.22E-51 | -1.69E-46 |
| MS.gene058088 | MS.gene29840 | 0.821668 | 3.57E-53 | -1.69E-46 |
| MS.gene058088 | MS.gene35611 | 0.835058 | 2.09E-56 | -1.69E-46 |
| MS.gene058088 | MS.gene39882 | 0.835562 | 1.56E-56 | -1.69E-46 |
| MS.gene058088 | MS.gene44256 | 0.804079 | 2.57E-49 | -1.69E-46 |
| MS.gene058088 | MS.gene48988 | 0.801267 | 9.76E-49 | -1.69E-46 |
| MS.gene058088 | MS.gene49320 | 0.842709 | 2.19E-58 | -1.69E-46 |
| MS.gene058088 | MS.gene49793 | 0.812484 | 4.14E-51 | -1.69E-46 |
| MS.gene058088 | MS.gene50775 | 0.827886 | 1.22E-54 | -1.69E-46 |
| MS.gene058088 | MS.gene51511 | 0.80011 | 1.68E-48 | -1.69E-46 |
| MS.gene058088 | MS.gene52357 | 0.838237 | 3.24E-57 | -1.69E-46 |
| MS.gene058088 | MS.gene55653 | 0.803525 | 3.34E-49 | -1.69E-46 |
| MS.gene058088 | MS.gene58686 | 0.800894 | 1.16E-48 | -1.69E-46 |
| MS.gene058088 | MS.gene58905 | 0.830956 | 2.19E-55 | -1.69E-46 |
| MS.gene058088 | MS.gene66990 | 0.82719 | 1.79E-54 | -1.69E-46 |
| MS.gene058088 | MS.gene67662 | 0.814416 | 1.56E-51 | -1.69E-46 |
| MS.gene058088 | MS.gene68215 | 0.807862 | 4.11E-50 | -1.69E-46 |
| MS.gene058088 | MS.gene71308 | 0.801144 | 1.03E-48 | -1.69E-46 |
| MS.gene058088 | MS.gene72290 | 0.80155 | 8.54E-49 | -1.69E-46 |
| MS.gene058088 | MS.gene74583 | 0.813558 | 2.41E-51 | -1.69E-46 |
| MS.gene058088 | MS.gene75680 | 0.807969 | 3.90E-50 | -1.69E-46 |
| MS.gene058088 | MS.gene81406 | 0.803824 | 2.90E-49 | -1.69E-46 |
| MS.gene058088 | MS.gene81900 | 0.801234 | 9.91E-49 | -1.69E-46 |
| MS.gene058088 | MS.gene85663 | 0.815471 | 9.09E-52 | -1.69E-46 |
| MS.gene058088 | MS.gene87795 | 0.806457 | 8.15E-50 | -1.69E-46 |
| MS.gene058088 | MS.gene87954 | 0.813119 | 3.01E-51 | -1.69E-46 |
| MS.gene058088 | MS.gene90981 | 0.807584 | 4.71E-50 | -1.69E-46 |
| MS.gene058088 | MS.gene92188 | 0.827353 | 1.64E-54 | -1.69E-46 |
| MS.gene058088 | MS.gene93764 | 0.819519 | 1.11E-52 | -1.69E-46 |
| MS.gene058088 | MS.gene95625 | 0.802785 | 4.76E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058088.t1 | MTR_5g007360 | 95.395 | 152 | 7 | 0 | 2 | 153 | 169 | 320 | 1.09e-101 | 295 |
| MS.gene058088.t1 | MTR_3g091670 | 68.966 | 58 | 18 | 0 | 96 | 153 | 6 | 63 | 2.59e-22 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058088.t1 | AT1G65020 | 65.248 | 141 | 48 | 1 | 4 | 144 | 169 | 308 | 9.95e-59 | 186 |
Find 38 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGAGAGTTCCTTGAATTTA+AGG | 0.162942 | 5.1:+1794685 | MS.gene058088:CDS |
| GTCCAAACATGCTTGTCTTT+TGG | 0.226912 | 5.1:-1794772 | None:intergenic |
| TCCTTAGCACAGCTCCGATA+TGG | 0.248467 | 5.1:+1793218 | MS.gene058088:CDS |
| AAGTACTGAGATCATCTTTC+AGG | 0.289690 | 5.1:+1795433 | MS.gene058088:CDS |
| CTCTGGTGCTGATGCTCCCT+TGG | 0.331844 | 5.1:-1795387 | None:intergenic |
| AAAGCAGCTATAAGTCTTGC+TGG | 0.347631 | 5.1:+1795701 | MS.gene058088:CDS |
| GAGAGCACACTCTTTGTTCC+GGG | 0.351339 | 5.1:-1793121 | None:intergenic |
| ATCCAAAAGACAAGCATGTT+TGG | 0.358398 | 5.1:+1794770 | MS.gene058088:CDS |
| AGAGAGCACACTCTTTGTTC+CGG | 0.360940 | 5.1:-1793122 | None:intergenic |
| CCTCCTTGCCCTTAAATTCA+AGG | 0.368520 | 5.1:-1794694 | None:intergenic |
| GGAGAGTTCCTTGAATTTAA+GGG | 0.377759 | 5.1:+1794686 | MS.gene058088:CDS |
| CAAAGAGTGTGCTCTCTAGC+TGG | 0.413619 | 5.1:+1793128 | MS.gene058088:CDS |
| AAAGGCAGCAAGTATGTATT+GGG | 0.428495 | 5.1:+1794665 | MS.gene058088:CDS |
| GTAAAGAATACCTTTCTTAG+TGG | 0.432856 | 5.1:+1793151 | MS.gene058088:CDS |
| GAAAGGCAGCAAGTATGTAT+TGG | 0.437053 | 5.1:+1794664 | MS.gene058088:CDS |
| TACAAAACTTGAAGCGTAGA+AGG | 0.445109 | 5.1:-1795344 | None:intergenic |
| CCTTAGCACAGCTCCGATAT+GGG | 0.458981 | 5.1:+1793219 | MS.gene058088:CDS |
| TGAATTTAAGGGCAAGGAGG+GGG | 0.482520 | 5.1:+1794697 | MS.gene058088:CDS |
| ATCATTCTTCCCACTAAGAA+AGG | 0.488207 | 5.1:-1793161 | None:intergenic |
| CTTGAATTTAAGGGCAAGGA+GGG | 0.496833 | 5.1:+1794695 | MS.gene058088:CDS |
| TCTATTAGGAAATGTATTTG+CGG | 0.509906 | 5.1:-1796149 | None:intergenic |
| TAAAGAATACCTTTCTTAGT+GGG | 0.519984 | 5.1:+1793152 | MS.gene058088:CDS |
| TTGAATTTAAGGGCAAGGAG+GGG | 0.528134 | 5.1:+1794696 | MS.gene058088:CDS |
| CTCCCTTGGTTCTGTAGTCA+CGG | 0.532065 | 5.1:-1795373 | None:intergenic |
| GTTCCTTGAATTTAAGGGCA+AGG | 0.535185 | 5.1:+1794691 | MS.gene058088:CDS |
| GTAACTAACCTATCCCATAT+CGG | 0.537606 | 5.1:-1793232 | None:intergenic |
| ACGGTCACTTCGTTCCACTC+TGG | 0.541796 | 5.1:-1795404 | None:intergenic |
| CATATTAGAAGATCAAAAGT+TGG | 0.546113 | 5.1:+1794737 | MS.gene058088:CDS |
| AAGACAAGCATGTTTGGACT+AGG | 0.550639 | 5.1:+1794776 | MS.gene058088:CDS |
| CAGTTGGTGCAACTGAAGCC+CGG | 0.558138 | 5.1:+1793103 | MS.gene058088:intron |
| AAAGAGTGTGCTCTCTAGCT+GGG | 0.564254 | 5.1:+1793129 | MS.gene058088:CDS |
| CCCATATCGGAGCTGTGCTA+AGG | 0.568778 | 5.1:-1793219 | None:intergenic |
| CCTTGAATTTAAGGGCAAGG+AGG | 0.585033 | 5.1:+1794694 | MS.gene058088:CDS |
| GCACAGCTCCGATATGGGAT+AGG | 0.585641 | 5.1:+1793224 | MS.gene058088:CDS |
| GCTTGCAGGTTGGAACTGAA+AGG | 0.595661 | 5.1:+1794647 | MS.gene058088:intron |
| TTCCGTGACTACAGAACCAA+GGG | 0.621677 | 5.1:+1795371 | MS.gene058088:CDS |
| TTTCCGTGACTACAGAACCA+AGG | 0.679639 | 5.1:+1795370 | MS.gene058088:CDS |
| AGGGAGCATCAGCACCAGAG+TGG | 0.687214 | 5.1:+1795390 | MS.gene058088:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTATAATAACAAAATTTAAT+GGG | + | chr5.1:1794846-1794865 | MS.gene058088:intron | 10.0% |
| !! | AAATAATATTGATGTTTCAT+TGG | - | chr5.1:1794036-1794055 | None:intergenic | 15.0% |
| !! | AAATTTCAATAAGAAAAACT+TGG | + | chr5.1:1795912-1795931 | MS.gene058088:intron | 15.0% |
| !! | AAGAACTAATTAAAAAAGAA+TGG | - | chr5.1:1792788-1792807 | None:intergenic | 15.0% |
| !! | AGTATTAAATAAAACATTGA+GGG | - | chr5.1:1794931-1794950 | None:intergenic | 15.0% |
| !! | GCTATAATAACAAAATTTAA+TGG | + | chr5.1:1794845-1794864 | MS.gene058088:intron | 15.0% |
| !! | TAAATAGTTAAGTGTATAAT+AGG | - | chr5.1:1794061-1794080 | None:intergenic | 15.0% |
| !! | TAGTATTAAATAAAACATTG+AGG | - | chr5.1:1794932-1794951 | None:intergenic | 15.0% |
| !!! | ACTTTAAAATTTTCCAAATT+TGG | + | chr5.1:1792725-1792744 | MS.gene058088:intron | 15.0% |
| !!! | ATAACTCAATTCTTTAATTT+CGG | + | chr5.1:1794149-1794168 | MS.gene058088:intron | 15.0% |
| !!! | ATTCTTTTTTAATTAGTTCT+TGG | + | chr5.1:1792787-1792806 | MS.gene058088:intron | 15.0% |
| !!! | GAATAAGATACTTTTTATTT+TGG | + | chr5.1:1796075-1796094 | MS.gene058088:intron | 15.0% |
| !!! | TATTTAATATGACCAAATTT+TGG | + | chr5.1:1794599-1794618 | MS.gene058088:intron | 15.0% |
| !!! | TTTTCAATAACATTAATGAA+GGG | + | chr5.1:1794114-1794133 | MS.gene058088:intron | 15.0% |
| !! | ACATACAAAATACTATTATG+TGG | + | chr5.1:1795580-1795599 | MS.gene058088:intron | 20.0% |
| !! | ATCTTATTCAAACATAGATT+AGG | - | chr5.1:1793614-1793633 | None:intergenic | 20.0% |
| !! | ATTACTGTCTAAACTATAAT+TGG | + | chr5.1:1792827-1792846 | MS.gene058088:intron | 20.0% |
| !! | ATTAGAAAGATAAGAACAAA+GGG | - | chr5.1:1793257-1793276 | None:intergenic | 20.0% |
| !! | TCTATTATATAACTTAGAGA+AGG | - | chr5.1:1795113-1795132 | None:intergenic | 20.0% |
| !! | TTTAACCAACAATATGAAAA+AGG | - | chr5.1:1793858-1793877 | None:intergenic | 20.0% |
| !!! | AATGGATTATACATATGAAT+AGG | - | chr5.1:1792770-1792789 | None:intergenic | 20.0% |
| !!! | ATAATAGTATTTTGTATGTC+TGG | - | chr5.1:1795579-1795598 | None:intergenic | 20.0% |
| !!! | GAATTGTGTTGTTAATAAAT+TGG | + | chr5.1:1792849-1792868 | MS.gene058088:intron | 20.0% |
| !!! | GTTTTCAATAACATTAATGA+AGG | + | chr5.1:1794113-1794132 | MS.gene058088:intron | 20.0% |
| !!! | TAGTACTATTGATTACTAAA+AGG | + | chr5.1:1793932-1793951 | MS.gene058088:intron | 20.0% |
| !!! | TTATGATGTAAAAAAAGCAT+TGG | + | chr5.1:1792924-1792943 | MS.gene058088:intron | 20.0% |
| !!! | TTTTCATATTGTTGGTTAAA+GGG | + | chr5.1:1793858-1793877 | MS.gene058088:intron | 20.0% |
| !!! | TTTTTCATATTGTTGGTTAA+AGG | + | chr5.1:1793857-1793876 | MS.gene058088:intron | 20.0% |
| !!! | TTTTTCCTTTTTCATATTGT+TGG | + | chr5.1:1793850-1793869 | MS.gene058088:intron | 20.0% |
| !!! | TTTTTGTGTAAATTTCGATT+GGG | + | chr5.1:1795981-1796000 | MS.gene058088:intron | 20.0% |
| !!! | TTTTTTGTGTAAATTTCGAT+TGG | + | chr5.1:1795980-1795999 | MS.gene058088:intron | 20.0% |
| ! | AAAATAATCAAACCGTGTAT+TGG | - | chr5.1:1792698-1792717 | None:intergenic | 25.0% |
| ! | AAACTTTCTGCAATCATATT+TGG | + | chr5.1:1793294-1793313 | MS.gene058088:intron | 25.0% |
| ! | AATATCTGTTGTAACCAAAA+TGG | - | chr5.1:1795007-1795026 | None:intergenic | 25.0% |
| ! | ATCAATCCATTTCTGAATAT+TGG | + | chr5.1:1793382-1793401 | MS.gene058088:intron | 25.0% |
| ! | ATTACATAGCAAATGTTGAT+AGG | + | chr5.1:1793882-1793901 | MS.gene058088:intron | 25.0% |
| ! | ATTTCTTAATCTGTGTGAAA+TGG | + | chr5.1:1794187-1794206 | MS.gene058088:intron | 25.0% |
| ! | CATATTAGAAGATCAAAAGT+TGG | + | chr5.1:1794737-1794756 | MS.gene058088:CDS | 25.0% |
| ! | CATTAGAAAGATAAGAACAA+AGG | - | chr5.1:1793258-1793277 | None:intergenic | 25.0% |
| ! | CTCAAAGCAACTTAAAATTT+GGG | - | chr5.1:1793973-1793992 | None:intergenic | 25.0% |
| ! | GATGTTTCTTTAACTAACAT+GGG | + | chr5.1:1795308-1795327 | MS.gene058088:intron | 25.0% |
| ! | GATTAGGAATACTAGTAATT+AGG | - | chr5.1:1793598-1793617 | None:intergenic | 25.0% |
| ! | GTAAAATTTGTGTCTAATCT+AGG | + | chr5.1:1796097-1796116 | MS.gene058088:intron | 25.0% |
| ! | GTGAGTAAAAAACCAAAATT+TGG | - | chr5.1:1794614-1794633 | None:intergenic | 25.0% |
| ! | TAAAGAATACCTTTCTTAGT+GGG | + | chr5.1:1793152-1793171 | MS.gene058088:CDS | 25.0% |
| ! | TCTCAAAGCAACTTAAAATT+TGG | - | chr5.1:1793974-1793993 | None:intergenic | 25.0% |
| ! | TGATGTTTCTTTAACTAACA+TGG | + | chr5.1:1795307-1795326 | MS.gene058088:intron | 25.0% |
| ! | TGTAAAGTGACTTACAATTT+GGG | - | chr5.1:1794010-1794029 | None:intergenic | 25.0% |
| ! | TTACACGATCATACTATAAT+AGG | + | chr5.1:1795655-1795674 | MS.gene058088:intron | 25.0% |
| ! | TTAGACAATAATAACATTGC+TGG | - | chr5.1:1795282-1795301 | None:intergenic | 25.0% |
| ! | TTGAAGTTGAAACAAAGATT+TGG | + | chr5.1:1794883-1794902 | MS.gene058088:intron | 25.0% |
| ! | TTGTAAAGTGACTTACAATT+TGG | - | chr5.1:1794011-1794030 | None:intergenic | 25.0% |
| ! | TTGTATTTAGATGCTGTTAA+TGG | + | chr5.1:1793323-1793342 | MS.gene058088:intron | 25.0% |
| ! | TTTACACAAAAAAAGCTGAT+CGG | - | chr5.1:1795973-1795992 | None:intergenic | 25.0% |
| !! | AAAAAGTACGATTTGTGTAT+TGG | - | chr5.1:1793744-1793763 | None:intergenic | 25.0% |
| !! | AAACATTTGAGATGCATTAT+AGG | - | chr5.1:1793535-1793554 | None:intergenic | 25.0% |
| !! | AAATTAAGAATTGCTCTAAG+AGG | - | chr5.1:1794296-1794315 | None:intergenic | 25.0% |
| !! | AACATTTGAGATGCATTATA+GGG | - | chr5.1:1793534-1793553 | None:intergenic | 25.0% |
| !! | ATCTATATTTGAGACAGAAT+TGG | - | chr5.1:1793491-1793510 | None:intergenic | 25.0% |
| !! | ATTAACAGCATATATGCTTT+TGG | - | chr5.1:1795892-1795911 | None:intergenic | 25.0% |
| !! | ATTTTATAGAAAAGAGTCAC+AGG | - | chr5.1:1795209-1795228 | None:intergenic | 25.0% |
| !! | GCTTAGATATTTTCCTATTT+GGG | + | chr5.1:1794505-1794524 | MS.gene058088:intron | 25.0% |
| !! | TATTTTGTATGTCTGGAAAA+GGG | - | chr5.1:1795572-1795591 | None:intergenic | 25.0% |
| !! | TCTAGTTTCATTGTTTATCT+AGG | - | chr5.1:1793717-1793736 | None:intergenic | 25.0% |
| !! | TGCTTAGATATTTTCCTATT+TGG | + | chr5.1:1794504-1794523 | MS.gene058088:intron | 25.0% |
| !! | TTTCATATTGTTGGTTAAAG+GGG | + | chr5.1:1793859-1793878 | MS.gene058088:intron | 25.0% |
| !!! | ACAAATCGTACTTTTTATTG+GGG | + | chr5.1:1793748-1793767 | MS.gene058088:intron | 25.0% |
| !!! | ACACAAATCGTACTTTTTAT+TGG | + | chr5.1:1793746-1793765 | MS.gene058088:intron | 25.0% |
| !!! | AGGTATTTAACTTGAGATTA+GGG | - | chr5.1:1793697-1793716 | None:intergenic | 25.0% |
| !!! | CACAAATCGTACTTTTTATT+GGG | + | chr5.1:1793747-1793766 | MS.gene058088:intron | 25.0% |
| !!! | TAGGTATTTAACTTGAGATT+AGG | - | chr5.1:1793698-1793717 | None:intergenic | 25.0% |
| !!! | TAGTTTTTTGTTTCAACTCT+TGG | + | chr5.1:1795789-1795808 | MS.gene058088:intron | 25.0% |
| AAGCAACTTAAAATTTGGGA+TGG | - | chr5.1:1793969-1793988 | None:intergenic | 30.0% | |
| AATGTTCTGATTCTTGATCT+TGG | - | chr5.1:1795140-1795159 | None:intergenic | 30.0% | |
| AGAATCAGAACATTCAACAT+TGG | + | chr5.1:1795146-1795165 | MS.gene058088:intron | 30.0% | |
| ATACTAGTAATTAGGATGTC+TGG | - | chr5.1:1793590-1793609 | None:intergenic | 30.0% | |
| ATCAAGATCTGATTAGACTA+TGG | - | chr5.1:1794984-1795003 | None:intergenic | 30.0% | |
| ATCCATTTCTGAATATTGGT+AGG | + | chr5.1:1793386-1793405 | MS.gene058088:intron | 30.0% | |
| ATCCTACCAATATTCAGAAA+TGG | - | chr5.1:1793391-1793410 | None:intergenic | 30.0% | |
| CAGCAAGTACTTATATTTCA+AGG | - | chr5.1:1792625-1792644 | None:intergenic | 30.0% | |
| CATAAGACAGAGGTAATTAT+CGG | - | chr5.1:1795243-1795262 | None:intergenic | 30.0% | |
| CATTCTGTTATAAAAGGATG+TGG | - | chr5.1:1794378-1794397 | None:intergenic | 30.0% | |
| GTAAAGAATACCTTTCTTAG+TGG | + | chr5.1:1793151-1793170 | MS.gene058088:CDS | 30.0% | |
| TAACAAAGTAGTTGCTCAAT+AGG | - | chr5.1:1796055-1796074 | None:intergenic | 30.0% | |
| TAGAGTCATTATCAGTTATC+AGG | - | chr5.1:1795748-1795767 | None:intergenic | 30.0% | |
| TCATAAATACTGCTTGTCAA+TGG | - | chr5.1:1792910-1792929 | None:intergenic | 30.0% | |
| TTACACAAAAAAAGCTGATC+GGG | - | chr5.1:1795972-1795991 | None:intergenic | 30.0% | |
| TTCAATCTCAGAACTCTATT+TGG | + | chr5.1:1793429-1793448 | MS.gene058088:intron | 30.0% | |
| TTCTGAATATTGGTAGGATA+AGG | + | chr5.1:1793392-1793411 | MS.gene058088:intron | 30.0% | |
| TTTACTCACAACAGATTGTT+TGG | + | chr5.1:1794625-1794644 | MS.gene058088:intron | 30.0% | |
| ! | AACTTAAAATTTGGGATGGA+GGG | - | chr5.1:1793965-1793984 | None:intergenic | 30.0% |
| ! | AATCAGATCTTGATCCATTT+TGG | + | chr5.1:1794990-1795009 | MS.gene058088:intron | 30.0% |
| ! | ATAACTGATAATGACTCTAG+TGG | + | chr5.1:1795749-1795768 | MS.gene058088:intron | 30.0% |
| ! | ATGGTTTTTGCCACTAATTA+AGG | - | chr5.1:1794965-1794984 | None:intergenic | 30.0% |
| ! | ATTCATGATTTGCCAATACA+CGG | + | chr5.1:1792683-1792702 | MS.gene058088:intron | 30.0% |
| ! | CAGCTTAAACTTTTTGATCT+TGG | - | chr5.1:1795471-1795490 | None:intergenic | 30.0% |
| ! | GATCTCAGTACTTGATTTTA+CGG | - | chr5.1:1795426-1795445 | None:intergenic | 30.0% |
| ! | GCTATTGACTATTGAGAAAA+CGG | - | chr5.1:1795817-1795836 | None:intergenic | 30.0% |
| ! | GGTCAAAATGACTTGTAATT+CGG | + | chr5.1:1794208-1794227 | MS.gene058088:intron | 30.0% |
| ! | GTATTTTGTATGTCTGGAAA+AGG | - | chr5.1:1795573-1795592 | None:intergenic | 30.0% |
| ! | GTCAAAATGACTTGTAATTC+GGG | + | chr5.1:1794209-1794228 | MS.gene058088:intron | 30.0% |
| ! | TATATTTGAGACAGAATTGG+AGG | - | chr5.1:1793488-1793507 | None:intergenic | 30.0% |
| ! | TGGTTTTTGCCACTAATTAA+GGG | - | chr5.1:1794964-1794983 | None:intergenic | 30.0% |
| ! | TTACTCAGTTTTCTTTTGAC+TGG | - | chr5.1:1792964-1792983 | None:intergenic | 30.0% |
| ! | TTATAGGGTTTTCATTCAGT+CGG | - | chr5.1:1793519-1793538 | None:intergenic | 30.0% |
| ! | TTCCAAATTTGGCTTCATAT+AGG | + | chr5.1:1792736-1792755 | MS.gene058088:intron | 30.0% |
| ! | TTTTTATTGGGGAAATACCT+TGG | + | chr5.1:1793759-1793778 | MS.gene058088:intron | 30.0% |
| AAAGGCAGCAAGTATGTATT+GGG | + | chr5.1:1794665-1794684 | MS.gene058088:CDS | 35.0% | |
| AACATTGCACCCTACATAAT+AGG | + | chr5.1:1794471-1794490 | MS.gene058088:intron | 35.0% | |
| ACTTTGGATCAGTGTACTAT+CGG | + | chr5.1:1794562-1794581 | MS.gene058088:intron | 35.0% | |
| AGTCATTATCAGTTATCAGG+TGG | - | chr5.1:1795745-1795764 | None:intergenic | 35.0% | |
| AGTTATTACCCATGAACAGT+TGG | + | chr5.1:1793087-1793106 | MS.gene058088:intron | 35.0% | |
| ATCATTCTTCCCACTAAGAA+AGG | - | chr5.1:1793164-1793183 | None:intergenic | 35.0% | |
| ATCCAAAAGACAAGCATGTT+TGG | + | chr5.1:1794770-1794789 | MS.gene058088:CDS | 35.0% | |
| CAACCAAATCCCTTAATTAG+TGG | + | chr5.1:1794952-1794971 | MS.gene058088:intron | 35.0% | |
| CATGGGTAATAACTTCAGAT+GGG | - | chr5.1:1793081-1793100 | None:intergenic | 35.0% | |
| CGATAATTACCTCTGTCTTA+TGG | + | chr5.1:1795241-1795260 | MS.gene058088:intron | 35.0% | |
| GACCTATATGAAGCCAAATT+TGG | - | chr5.1:1792741-1792760 | None:intergenic | 35.0% | |
| GCGACACATTCTGTTATAAA+AGG | - | chr5.1:1794384-1794403 | None:intergenic | 35.0% | |
| GGAGAGTTCCTTGAATTTAA+GGG | + | chr5.1:1794686-1794705 | MS.gene058088:CDS | 35.0% | |
| GTAACTAACCTATCCCATAT+CGG | - | chr5.1:1793235-1793254 | None:intergenic | 35.0% | |
| GTGTACTATCGGATAATTGT+TGG | + | chr5.1:1794573-1794592 | MS.gene058088:intron | 35.0% | |
| TACAAAACTTGAAGCGTAGA+AGG | - | chr5.1:1795347-1795366 | None:intergenic | 35.0% | |
| TCATGGGTAATAACTTCAGA+TGG | - | chr5.1:1793082-1793101 | None:intergenic | 35.0% | |
| TTGCCACTAATTAAGGGATT+TGG | - | chr5.1:1794958-1794977 | None:intergenic | 35.0% | |
| ! | AACTTGAGATTAGGGTTTTC+TGG | - | chr5.1:1793689-1793708 | None:intergenic | 35.0% |
| ! | CAACTTAAAATTTGGGATGG+AGG | - | chr5.1:1793966-1793985 | None:intergenic | 35.0% |
| ! | CTTGACAACACTTTTGCTTA+GGG | + | chr5.1:1793349-1793368 | MS.gene058088:intron | 35.0% |
| ! | CTTGGCAAAAGGAACATTTT+GGG | + | chr5.1:1793777-1793796 | MS.gene058088:intron | 35.0% |
| ! | TAGGTCTGCTATGTGTTTTT+AGG | + | chr5.1:1796116-1796135 | MS.gene058088:intron | 35.0% |
| ! | TTGACAACACTTTTGCTTAG+GGG | + | chr5.1:1793350-1793369 | MS.gene058088:intron | 35.0% |
| ! | TTGGCAAAAGGAACATTTTG+GGG | + | chr5.1:1793778-1793797 | MS.gene058088:intron | 35.0% |
| !! | AAAAAAAGCATTGGTCCATC+TGG | + | chr5.1:1792933-1792952 | MS.gene058088:intron | 35.0% |
| !! | AACATTCAACATTGGCTCTA+CGG | + | chr5.1:1795154-1795173 | MS.gene058088:intron | 35.0% |
| !! | AAGAATTGCTCTAAGAGGTT+GGG | - | chr5.1:1794291-1794310 | None:intergenic | 35.0% |
| !! | AAGTACTGAGATCATCTTTC+AGG | + | chr5.1:1795433-1795452 | MS.gene058088:CDS | 35.0% |
| !! | AGAAATGCGGGATATTTTGA+GGG | + | chr5.1:1796028-1796047 | MS.gene058088:intron | 35.0% |
| !! | TAAGAATTGCTCTAAGAGGT+TGG | - | chr5.1:1794292-1794311 | None:intergenic | 35.0% |
| !! | TTTTGACTGGATAAACCAGA+TGG | - | chr5.1:1792951-1792970 | None:intergenic | 35.0% |
| !!! | AGTCGACTTTTTCAGAAATG+CGG | + | chr5.1:1796015-1796034 | MS.gene058088:intron | 35.0% |
| AAAGCAGCTATAAGTCTTGC+TGG | + | chr5.1:1795701-1795720 | MS.gene058088:CDS | 40.0% | |
| AAGACAAGCATGTTTGGACT+AGG | + | chr5.1:1794776-1794795 | MS.gene058088:CDS | 40.0% | |
| AATTCGGGATGATAAATCCC+TGG | + | chr5.1:1794224-1794243 | MS.gene058088:intron | 40.0% | |
| ATGTAGAAAAATGAGCGCGA+AGG | - | chr5.1:1794445-1794464 | None:intergenic | 40.0% | |
| ATGTTCCTAAACGTTGGAAG+AGG | - | chr5.1:1795867-1795886 | None:intergenic | 40.0% | |
| ATTTGGAGAAGGCTCGATAA+CGG | + | chr5.1:1793446-1793465 | MS.gene058088:intron | 40.0% | |
| CAAAGTCAAGCAGATGTGTT+AGG | - | chr5.1:1794548-1794567 | None:intergenic | 40.0% | |
| CCTCTGTCTTATGGAAGATA+AGG | + | chr5.1:1795250-1795269 | MS.gene058088:intron | 40.0% | |
| CCTTATCTTCCATAAGACAG+AGG | - | chr5.1:1795253-1795272 | None:intergenic | 40.0% | |
| CTAACACATCTGCTTGACTT+TGG | + | chr5.1:1794546-1794565 | MS.gene058088:intron | 40.0% | |
| CTCAGAACTCTATTTGGAGA+AGG | + | chr5.1:1793435-1793454 | MS.gene058088:intron | 40.0% | |
| CTTGAATTTAAGGGCAAGGA+GGG | + | chr5.1:1794695-1794714 | MS.gene058088:CDS | 40.0% | |
| GAAAGGCAGCAAGTATGTAT+TGG | + | chr5.1:1794664-1794683 | MS.gene058088:CDS | 40.0% | |
| GATGATAAATCCCTGGTTTC+CGG | + | chr5.1:1794231-1794250 | MS.gene058088:intron | 40.0% | |
| GGAAAACTATCTCTTCTCAG+AGG | - | chr5.1:1794263-1794282 | None:intergenic | 40.0% | |
| GGAATGGTACTGCAAATACA+AGG | - | chr5.1:1793046-1793065 | None:intergenic | 40.0% | |
| GGGAGAGTTCCTTGAATTTA+AGG | + | chr5.1:1794685-1794704 | MS.gene058088:CDS | 40.0% | |
| GTTCCTTGAATTTAAGGGCA+AGG | + | chr5.1:1794691-1794710 | MS.gene058088:CDS | 40.0% | |
| TTGAATTTAAGGGCAAGGAG+GGG | + | chr5.1:1794696-1794715 | MS.gene058088:CDS | 40.0% | |
| TTGGCAATGTTCCTAAACGT+TGG | - | chr5.1:1795873-1795892 | None:intergenic | 40.0% | |
| TTGGGGTTATCTGTTGTACA+GGG | + | chr5.1:1793795-1793814 | MS.gene058088:intron | 40.0% | |
| ! | AGAGGTAGCAGTTTTCATTC+AGG | - | chr5.1:1795849-1795868 | None:intergenic | 40.0% |
| ! | CAGAAATGCGGGATATTTTG+AGG | + | chr5.1:1796027-1796046 | MS.gene058088:intron | 40.0% |
| ! | CCAAAATGTTCCTTTTGCCA+AGG | - | chr5.1:1793779-1793798 | None:intergenic | 40.0% |
| ! | CCTTGACAACACTTTTGCTT+AGG | + | chr5.1:1793348-1793367 | MS.gene058088:intron | 40.0% |
| ! | CCTTGGCAAAAGGAACATTT+TGG | + | chr5.1:1793776-1793795 | MS.gene058088:intron | 40.0% |
| ! | GTCCAAACATGCTTGTCTTT+TGG | - | chr5.1:1794775-1794794 | None:intergenic | 40.0% |
| ! | TTTGGGGTTATCTGTTGTAC+AGG | + | chr5.1:1793794-1793813 | MS.gene058088:intron | 40.0% |
| !! | CCTAAGCAAAAGTGTTGTCA+AGG | - | chr5.1:1793351-1793370 | None:intergenic | 40.0% |
| !!! | GTCGACTTTTTCAGAAATGC+GGG | + | chr5.1:1796016-1796035 | MS.gene058088:intron | 40.0% |
| !!! | TCTGCTATGTGTTTTTAGGC+TGG | + | chr5.1:1796120-1796139 | MS.gene058088:intron | 40.0% |
| ATCGGGAGTTACGATCTGAT+CGG | - | chr5.1:1795955-1795974 | None:intergenic | 45.0% | |
| CAGTTGCACCAACTGTTCAT+GGG | - | chr5.1:1793098-1793117 | None:intergenic | 45.0% | |
| CCTCCTTGCCCTTAAATTCA+AGG | - | chr5.1:1794697-1794716 | None:intergenic | 45.0% | |
| CCTTGAATTTAAGGGCAAGG+AGG | + | chr5.1:1794694-1794713 | MS.gene058088:CDS | 45.0% | |
| GCTTTGCTGGGTCTATAAGT+AGG | - | chr5.1:1793568-1793587 | None:intergenic | 45.0% | |
| TCAGATGGGAAATCACTAGC+AGG | - | chr5.1:1793067-1793086 | None:intergenic | 45.0% | |
| TCAGTTGCACCAACTGTTCA+TGG | - | chr5.1:1793099-1793118 | None:intergenic | 45.0% | |
| TGAATTTAAGGGCAAGGAGG+GGG | + | chr5.1:1794697-1794716 | MS.gene058088:CDS | 45.0% | |
| TGCACCCTACATAATAGGCT+CGG | + | chr5.1:1794476-1794495 | MS.gene058088:intron | 45.0% | |
| TGCTACCTCTTCCAACGTTT+AGG | + | chr5.1:1795859-1795878 | MS.gene058088:intron | 45.0% | |
| TGGGAAATCACTAGCAGGAA+TGG | - | chr5.1:1793062-1793081 | None:intergenic | 45.0% | |
| TGGGGAAATACCTTGGCAAA+AGG | + | chr5.1:1793766-1793785 | MS.gene058088:intron | 45.0% | |
| TTCCGTGACTACAGAACCAA+GGG | + | chr5.1:1795371-1795390 | MS.gene058088:CDS | 45.0% | |
| TTGCCCGAGCCTATTATGTA+GGG | - | chr5.1:1794483-1794502 | None:intergenic | 45.0% | |
| TTTCCGTGACTACAGAACCA+AGG | + | chr5.1:1795370-1795389 | MS.gene058088:CDS | 45.0% | |
| ! | AAAGAGTGTGCTCTCTAGCT+GGG | + | chr5.1:1793129-1793148 | MS.gene058088:CDS | 45.0% |
| ! | AGAGAGCACACTCTTTGTTC+CGG | - | chr5.1:1793125-1793144 | None:intergenic | 45.0% |
| !! | AGATTGTTTGGCTTGCAGGT+TGG | + | chr5.1:1794637-1794656 | MS.gene058088:intron | 45.0% |
| !! | ATTAGGATGTCTGGCTTTGC+TGG | - | chr5.1:1793581-1793600 | None:intergenic | 45.0% |
| !! | CAACAGATTGTTTGGCTTGC+AGG | + | chr5.1:1794633-1794652 | MS.gene058088:intron | 45.0% |
| !! | TTAGGATGTCTGGCTTTGCT+GGG | - | chr5.1:1793580-1793599 | None:intergenic | 45.0% |
| ATTTGGGTCCACACTCATCC+AGG | + | chr5.1:1794521-1794540 | MS.gene058088:intron | 50.0% | |
| CAAGCAGATGTGTTAGGACC+TGG | - | chr5.1:1794542-1794561 | None:intergenic | 50.0% | |
| CCTTAGCACAGCTCCGATAT+GGG | + | chr5.1:1793219-1793238 | MS.gene058088:CDS | 50.0% | |
| CTCTTCTCAGAGGATTGCTC+CGG | - | chr5.1:1794253-1794272 | None:intergenic | 50.0% | |
| GCACCCTACATAATAGGCTC+GGG | + | chr5.1:1794477-1794496 | MS.gene058088:intron | 50.0% | |
| GGAGTTACGATCTGATCGGA+CGG | - | chr5.1:1795951-1795970 | None:intergenic | 50.0% | |
| GGATGAGTGTGGACCCAAAT+AGG | - | chr5.1:1794521-1794540 | None:intergenic | 50.0% | |
| GTTGCCCGAGCCTATTATGT+AGG | - | chr5.1:1794484-1794503 | None:intergenic | 50.0% | |
| TCCTTAGCACAGCTCCGATA+TGG | + | chr5.1:1793218-1793237 | MS.gene058088:CDS | 50.0% | |
| TGCGACGTGGTAGAGAATGA+AGG | - | chr5.1:1794420-1794439 | None:intergenic | 50.0% | |
| TGTTAGGACCTGGATGAGTG+TGG | - | chr5.1:1794532-1794551 | None:intergenic | 50.0% | |
| ! | CAAAGAGTGTGCTCTCTAGC+TGG | + | chr5.1:1793128-1793147 | MS.gene058088:CDS | 50.0% |
| ! | GAGAGCACACTCTTTGTTCC+GGG | - | chr5.1:1793124-1793143 | None:intergenic | 50.0% |
| ! | GCTTGCAGGTTGGAACTGAA+AGG | + | chr5.1:1794647-1794666 | MS.gene058088:intron | 50.0% |
| !! | CTCCCTTGGTTCTGTAGTCA+CGG | - | chr5.1:1795376-1795395 | None:intergenic | 50.0% |
| ACGGTCACTTCGTTCCACTC+TGG | - | chr5.1:1795407-1795426 | None:intergenic | 55.0% | |
| AGAGGATTGCTCCGGAAACC+AGG | - | chr5.1:1794245-1794264 | None:intergenic | 55.0% | |
| CCCATATCGGAGCTGTGCTA+AGG | - | chr5.1:1793222-1793241 | None:intergenic | 55.0% | |
| GAGGATTGCTCCGGAAACCA+GGG | - | chr5.1:1794244-1794263 | None:intergenic | 55.0% | |
| GCACAGCTCCGATATGGGAT+AGG | + | chr5.1:1793224-1793243 | MS.gene058088:CDS | 55.0% | |
| ! | CAGTTGGTGCAACTGAAGCC+CGG | + | chr5.1:1793103-1793122 | MS.gene058088:intron | 55.0% |
| !! | GCTCTAAGAGGTTGGGCAGA+GGG | - | chr5.1:1794284-1794303 | None:intergenic | 55.0% |
| !! | TGCTCTAAGAGGTTGGGCAG+AGG | - | chr5.1:1794285-1794304 | None:intergenic | 55.0% |
| !! | AGGGAGCATCAGCACCAGAG+TGG | + | chr5.1:1795390-1795409 | MS.gene058088:CDS | 60.0% |
| !! | CTCTGGTGCTGATGCTCCCT+TGG | - | chr5.1:1795390-1795409 | None:intergenic | 60.0% |
| GAGCGCGAAGGAATGCGACG+TGG | - | chr5.1:1794433-1794452 | None:intergenic | 65.0% | |
| GGGCAAGGAGGGGGATGTTG+AGG | + | chr5.1:1794706-1794725 | MS.gene058088:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 1792603 | 1796167 | 1792603 | ID=MS.gene058088 |
| chr5.1 | mRNA | 1792603 | 1796167 | 1792603 | ID=MS.gene058088.t1;Parent=MS.gene058088 |
| chr5.1 | exon | 1792603 | 1792605 | 1792603 | ID=MS.gene058088.t1.exon1;Parent=MS.gene058088.t1 |
| chr5.1 | CDS | 1792603 | 1792605 | 1792603 | ID=cds.MS.gene058088.t1;Parent=MS.gene058088.t1 |
| chr5.1 | exon | 1793106 | 1793245 | 1793106 | ID=MS.gene058088.t1.exon2;Parent=MS.gene058088.t1 |
| chr5.1 | CDS | 1793106 | 1793245 | 1793106 | ID=cds.MS.gene058088.t1;Parent=MS.gene058088.t1 |
| chr5.1 | exon | 1794655 | 1794797 | 1794655 | ID=MS.gene058088.t1.exon3;Parent=MS.gene058088.t1 |
| chr5.1 | CDS | 1794655 | 1794797 | 1794655 | ID=cds.MS.gene058088.t1;Parent=MS.gene058088.t1 |
| chr5.1 | exon | 1795342 | 1795496 | 1795342 | ID=MS.gene058088.t1.exon4;Parent=MS.gene058088.t1 |
| chr5.1 | CDS | 1795342 | 1795496 | 1795342 | ID=cds.MS.gene058088.t1;Parent=MS.gene058088.t1 |
| chr5.1 | exon | 1795677 | 1795727 | 1795677 | ID=MS.gene058088.t1.exon5;Parent=MS.gene058088.t1 |
| chr5.1 | CDS | 1795677 | 1795727 | 1795677 | ID=cds.MS.gene058088.t1;Parent=MS.gene058088.t1 |
| chr5.1 | exon | 1796138 | 1796167 | 1796138 | ID=MS.gene058088.t1.exon6;Parent=MS.gene058088.t1 |
| chr5.1 | CDS | 1796138 | 1796167 | 1796138 | ID=cds.MS.gene058088.t1;Parent=MS.gene058088.t1 |
| Gene Sequence |
| Protein sequence |
