Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72785.t1 | XP_003612550.1 | 75.1 | 458 | 13 | 1 | 1 | 357 | 1 | 458 | 6.60E-184 | 653.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72785.t1 | G7K5F8 | 75.1 | 458 | 13 | 1 | 1 | 357 | 1 | 458 | 4.7e-184 | 653.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056545 | MS.gene72785 | 0.800647 | 1.31E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene72785 | MS.gene017058 | PPI |
| MS.gene72785 | MS.gene69496 | PPI |
| MS.gene72785 | MS.gene019178 | PPI |
| MS.gene72785 | MS.gene47721 | PPI |
| MS.gene72785 | MS.gene48023 | PPI |
| MS.gene72785 | MS.gene48021 | PPI |
| MS.gene72785 | MS.gene48027 | PPI |
| MS.gene72785 | MS.gene017054 | PPI |
| MS.gene72785 | MS.gene038271 | PPI |
| MS.gene72785 | MS.gene22199 | PPI |
| MS.gene72785 | MS.gene017053 | PPI |
| MS.gene72785 | MS.gene47719 | PPI |
| MS.gene72785 | MS.gene000507 | PPI |
| MS.gene72785 | MS.gene47716 | PPI |
| MS.gene72785 | MS.gene038274 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72785.t1 | MTR_5g026320 | 96.667 | 210 | 7 | 0 | 148 | 357 | 249 | 458 | 2.95e-146 | 421 |
| MS.gene72785.t1 | MTR_5g026320 | 95.302 | 149 | 7 | 0 | 1 | 149 | 1 | 149 | 2.51e-97 | 296 |
| MS.gene72785.t1 | MTR_5g090880 | 43.820 | 178 | 91 | 5 | 158 | 327 | 265 | 441 | 7.17e-35 | 133 |
| MS.gene72785.t1 | MTR_5g090830 | 41.341 | 179 | 96 | 5 | 157 | 327 | 262 | 439 | 1.28e-33 | 130 |
| MS.gene72785.t1 | MTR_5g090830 | 36.508 | 126 | 75 | 3 | 15 | 138 | 7 | 129 | 4.13e-13 | 70.5 |
| MS.gene72785.t1 | MTR_5g090810 | 41.341 | 179 | 96 | 5 | 157 | 327 | 262 | 439 | 1.41e-33 | 129 |
| MS.gene72785.t1 | MTR_5g090810 | 36.508 | 126 | 75 | 3 | 15 | 138 | 7 | 129 | 4.36e-13 | 70.5 |
| MS.gene72785.t1 | MTR_3g450690 | 37.736 | 212 | 119 | 5 | 157 | 356 | 263 | 473 | 1.11e-32 | 127 |
| MS.gene72785.t1 | MTR_3g450690 | 38.462 | 104 | 56 | 2 | 53 | 149 | 44 | 146 | 2.38e-11 | 65.1 |
| MS.gene72785.t1 | MTR_3g450710 | 37.915 | 211 | 118 | 5 | 157 | 355 | 259 | 468 | 1.66e-32 | 127 |
| MS.gene72785.t1 | MTR_3g450710 | 39.175 | 97 | 58 | 1 | 53 | 149 | 44 | 139 | 1.41e-13 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72785.t1 | AT1G31490 | 56.667 | 240 | 91 | 4 | 118 | 357 | 216 | 442 | 7.47e-92 | 282 |
| MS.gene72785.t1 | AT1G31490 | 52.206 | 136 | 62 | 3 | 16 | 149 | 4 | 138 | 6.90e-40 | 146 |
| MS.gene72785.t1 | AT5G16410 | 36.207 | 232 | 131 | 8 | 111 | 329 | 224 | 451 | 2.64e-35 | 134 |
| MS.gene72785.t1 | AT1G78990 | 37.838 | 222 | 127 | 6 | 116 | 329 | 207 | 425 | 1.74e-34 | 132 |
| MS.gene72785.t1 | AT1G32910 | 36.323 | 223 | 129 | 6 | 117 | 329 | 211 | 430 | 2.79e-33 | 129 |
Find 69 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGAGACTTGCTTCTGTTTA+TGG | 0.091737 | 5.1:+16868173 | MS.gene72785:intron |
| GAGAGATTAATCACTGAAAA+TGG | 0.231244 | 5.1:-16867528 | None:intergenic |
| TCAAATCTTGATCTACTTTC+AGG | 0.243930 | 5.1:+16867549 | MS.gene72785:CDS |
| TCCTGTTAGTGAAGTTGATT+TGG | 0.253495 | 5.1:+16868586 | MS.gene72785:CDS |
| CATCGGTAATGTATTGTCTT+TGG | 0.264157 | 5.1:+16868349 | MS.gene72785:CDS |
| GGATTTGGAAGTCCTTTGTT+AGG | 0.289603 | 5.1:+16868608 | MS.gene72785:CDS |
| AGCTTCAATCTTTGTTCTCT+TGG | 0.297597 | 5.1:-16868198 | None:intergenic |
| TTCAAAGCATCTACTAATTC+AGG | 0.309519 | 5.1:-16868731 | None:intergenic |
| CCTGTCTTAGTGGTTTCTTC+AGG | 0.314491 | 5.1:+16868554 | MS.gene72785:CDS |
| AGATTTCCCTTTACAAATTC+AGG | 0.320821 | 5.1:+16867851 | MS.gene72785:CDS |
| TAGAAATACAAGTATGTAAC+TGG | 0.322652 | 5.1:-16867579 | None:intergenic |
| TGAATTTGTAAAGGGAAATC+TGG | 0.334806 | 5.1:-16867849 | None:intergenic |
| TTGATTGGATTGAGTTTCAT+AGG | 0.350449 | 5.1:+16868486 | MS.gene72785:CDS |
| GATTTGAAGTTACCTAGTTT+TGG | 0.354372 | 5.1:-16867609 | None:intergenic |
| ATGCTTGCAAAGGCGGTGTT+AGG | 0.354998 | 5.1:+16868518 | MS.gene72785:CDS |
| CCTGTTAGTGAAGTTGATTT+GGG | 0.355976 | 5.1:+16868587 | MS.gene72785:CDS |
| ATTACTTGGATTTGATTGAT+TGG | 0.362571 | 5.1:+16868471 | MS.gene72785:CDS |
| CTGTTACCTGAATTTGTAAA+GGG | 0.364202 | 5.1:-16867857 | None:intergenic |
| AGTGAAGTTGATTTGGGATT+TGG | 0.366196 | 5.1:+16868593 | MS.gene72785:CDS |
| AATCATTACTATCCCTTTGC+TGG | 0.366290 | 5.1:+16867672 | MS.gene72785:CDS |
| CCCAAATCAACTTCACTAAC+AGG | 0.388576 | 5.1:-16868587 | None:intergenic |
| TTAATCACTGAAAATGGCTT+TGG | 0.389224 | 5.1:-16867522 | None:intergenic |
| AATGTATTGTCTTTGGCTTT+CGG | 0.391960 | 5.1:+16868356 | MS.gene72785:CDS |
| AAGCTTTCTCTGCATATGTA+TGG | 0.403699 | 5.1:+16868216 | MS.gene72785:CDS |
| GTGGTAAGGGTGATGGTTCA+TGG | 0.408074 | 5.1:+16868687 | MS.gene72785:CDS |
| TTGTTGTCACAAACGATTTG+AGG | 0.427819 | 5.1:-16867726 | None:intergenic |
| TGAATTAGTAGATGCTTTGA+AGG | 0.434332 | 5.1:+16868733 | MS.gene72785:CDS |
| TCTGTTACCTGAATTTGTAA+AGG | 0.444738 | 5.1:-16867858 | None:intergenic |
| TAGTAATGAGGAACATTACT+TGG | 0.453243 | 5.1:+16868457 | MS.gene72785:CDS |
| AAGATGGGTTGGTTAGTAGA+TGG | 0.454588 | 5.1:+16868284 | MS.gene72785:CDS |
| GAATCAAAGGCAAAGTGGTA+AGG | 0.464027 | 5.1:+16868673 | MS.gene72785:CDS |
| TTGAACAATGTGACCAGCAA+AGG | 0.477158 | 5.1:-16867685 | None:intergenic |
| AACACCAACCCTTTCAATTG+AGG | 0.478455 | 5.1:-16868642 | None:intergenic |
| GATTTGGAAGTCCTTTGTTA+GGG | 0.486362 | 5.1:+16868609 | MS.gene72785:CDS |
| CTTTGGCTTTCGGTGAGGCA+AGG | 0.495189 | 5.1:+16868366 | MS.gene72785:CDS |
| TGGATTGAGTTTCATAGGCC+AGG | 0.499721 | 5.1:+16868491 | MS.gene72785:CDS |
| AGATGATGGACCTGTCTTAG+TGG | 0.507067 | 5.1:+16868544 | MS.gene72785:CDS |
| CTGAAGATGAGAAGCAGTCA+TGG | 0.511063 | 5.1:-16868774 | None:intergenic |
| ACAAGTATGTAACTGGAAAA+CGG | 0.512372 | 5.1:-16867572 | None:intergenic |
| CATTGTTCAAAATCATAAAA+CGG | 0.517841 | 5.1:+16867698 | MS.gene72785:CDS |
| AATCAAAGGCAAAGTGGTAA+GGG | 0.520980 | 5.1:+16868674 | MS.gene72785:CDS |
| TGAACAATGTGACCAGCAAA+GGG | 0.522796 | 5.1:-16867684 | None:intergenic |
| AGGTTTGATGCTTGCAAAGG+CGG | 0.529986 | 5.1:+16868511 | MS.gene72785:CDS |
| AGTTCATGATGCAATTTCAA+AGG | 0.532962 | 5.1:+16868433 | MS.gene72785:CDS |
| AATTTCAAAGGTTAGTAATG+AGG | 0.533878 | 5.1:+16868445 | MS.gene72785:CDS |
| CAGTGTATACCTCAATTGAA+AGG | 0.543563 | 5.1:+16868633 | MS.gene72785:CDS |
| GATGGAAGAGAAAGAATGAG+TGG | 0.544115 | 5.1:+16868302 | MS.gene72785:CDS |
| GGCAAGGATTCAAGAATTGA+AGG | 0.552829 | 5.1:+16868382 | MS.gene72785:CDS |
| GCCTTTGCAAGCATCAAACC+TGG | 0.556923 | 5.1:-16868509 | None:intergenic |
| GTGTTGGTTATATGAATCAA+AGG | 0.560599 | 5.1:+16868660 | MS.gene72785:CDS |
| AGTGTATACCTCAATTGAAA+GGG | 0.563977 | 5.1:+16868634 | MS.gene72785:CDS |
| TCAATTGAAAGGGTTGGTGT+TGG | 0.564088 | 5.1:+16868644 | MS.gene72785:CDS |
| CCTGAAGAAACCACTAAGAC+AGG | 0.567163 | 5.1:-16868554 | None:intergenic |
| GGACTGTTTCTGCTATCTTG+TGG | 0.568637 | 5.1:+16868708 | MS.gene72785:CDS |
| TAGTGGTTTCTTCAGGACAA+AGG | 0.574621 | 5.1:+16868561 | MS.gene72785:CDS |
| AGGATTCAAGAATTGAAGGA+AGG | 0.590702 | 5.1:+16868386 | MS.gene72785:CDS |
| TCTTGAAGAAAAGATAGTCT+CGG | 0.591038 | 5.1:+16867821 | MS.gene72785:CDS |
| GCCAGGTTTGATGCTTGCAA+AGG | 0.594613 | 5.1:+16868508 | MS.gene72785:CDS |
| TATACCTCAATTGAAAGGGT+TGG | 0.598377 | 5.1:+16868638 | MS.gene72785:CDS |
| TGAAGATGAGAAGCAGTCAT+GGG | 0.598746 | 5.1:-16868773 | None:intergenic |
| AGGCAAAGTGGTAAGGGTGA+TGG | 0.604002 | 5.1:+16868680 | MS.gene72785:CDS |
| GAAGGTTCATTATCAGACAT+AGG | 0.615379 | 5.1:+16868404 | MS.gene72785:CDS |
| GCGGTGTTAGGACAAGATGA+TGG | 0.622280 | 5.1:+16868530 | MS.gene72785:CDS |
| ATTGTCTTTGGCTTTCGGTG+AGG | 0.622701 | 5.1:+16868361 | MS.gene72785:CDS |
| AATTCAATGTCGAATTACAT+CGG | 0.628778 | 5.1:+16868332 | MS.gene72785:CDS |
| TATATGAATCAAAGGCAAAG+TGG | 0.632585 | 5.1:+16868668 | MS.gene72785:CDS |
| CAAATCGTTTGTGACAACAA+TGG | 0.655714 | 5.1:+16867729 | MS.gene72785:CDS |
| GTATACACTGTCCCTAACAA+AGG | 0.661728 | 5.1:-16868620 | None:intergenic |
| ATGGAAGAAAATGATAAACA+CGG | 0.726903 | 5.1:+16868235 | MS.gene72785:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAATTTGATCCAAATA+AGG | - | chr5.1:16868056-16868075 | None:intergenic | 15.0% |
| !! | TAAAAATCTAAATTACTTAG+TGG | - | chr5.1:16867786-16867805 | None:intergenic | 15.0% |
| !!! | TTCAAATTTTTCATATTCTT+GGG | - | chr5.1:16867457-16867476 | None:intergenic | 15.0% |
| !! | CATTGTTCAAAATCATAAAA+CGG | + | chr5.1:16867698-16867717 | MS.gene72785:CDS | 20.0% |
| !!! | CTTCAAATTTTTCATATTCT+TGG | - | chr5.1:16867458-16867477 | None:intergenic | 20.0% |
| ! | AAATTTGATCCAAATAAGGT+TGG | - | chr5.1:16868052-16868071 | None:intergenic | 25.0% |
| ! | AATTCAATGTCGAATTACAT+CGG | + | chr5.1:16868332-16868351 | MS.gene72785:CDS | 25.0% |
| ! | AATTTCAAAGGTTAGTAATG+AGG | + | chr5.1:16868445-16868464 | MS.gene72785:CDS | 25.0% |
| ! | ACTTCATAAAAAATGCAAGA+TGG | + | chr5.1:16868268-16868287 | MS.gene72785:CDS | 25.0% |
| ! | ATGGAAGAAAATGATAAACA+CGG | + | chr5.1:16868235-16868254 | MS.gene72785:CDS | 25.0% |
| ! | ATTACTTGGATTTGATTGAT+TGG | + | chr5.1:16868471-16868490 | MS.gene72785:CDS | 25.0% |
| ! | CTTCATAAAAAATGCAAGAT+GGG | + | chr5.1:16868269-16868288 | MS.gene72785:CDS | 25.0% |
| ! | TAGAAATACAAGTATGTAAC+TGG | - | chr5.1:16867582-16867601 | None:intergenic | 25.0% |
| ! | TTCTACAAAAAACCAAAACT+AGG | + | chr5.1:16867597-16867616 | MS.gene72785:CDS | 25.0% |
| ! | TTGGTAAATTCATTTCATCT+TGG | + | chr5.1:16867946-16867965 | MS.gene72785:intron | 25.0% |
| !! | AATTTTTATCAAATGCACCA+TGG | + | chr5.1:16868067-16868086 | MS.gene72785:intron | 25.0% |
| !!! | TTTACTTTTGATCATGCATT+AGG | + | chr5.1:16867909-16867928 | MS.gene72785:intron | 25.0% |
| ACAAGTATGTAACTGGAAAA+CGG | - | chr5.1:16867575-16867594 | None:intergenic | 30.0% | |
| AGATTTCCCTTTACAAATTC+AGG | + | chr5.1:16867851-16867870 | MS.gene72785:CDS | 30.0% | |
| AGTGTATACCTCAATTGAAA+GGG | + | chr5.1:16868634-16868653 | MS.gene72785:CDS | 30.0% | |
| AGTTCATGATGCAATTTCAA+AGG | + | chr5.1:16868433-16868452 | MS.gene72785:CDS | 30.0% | |
| ATAAAAAATGCAAGATGGGT+TGG | + | chr5.1:16868273-16868292 | MS.gene72785:CDS | 30.0% | |
| CTGTTACCTGAATTTGTAAA+GGG | - | chr5.1:16867860-16867879 | None:intergenic | 30.0% | |
| GAGAGATTAATCACTGAAAA+TGG | - | chr5.1:16867531-16867550 | None:intergenic | 30.0% | |
| TAGTAATGAGGAACATTACT+TGG | + | chr5.1:16868457-16868476 | MS.gene72785:CDS | 30.0% | |
| TATATGAATCAAAGGCAAAG+TGG | + | chr5.1:16868668-16868687 | MS.gene72785:CDS | 30.0% | |
| TCAAATCTTGATCTACTTTC+AGG | + | chr5.1:16867549-16867568 | MS.gene72785:CDS | 30.0% | |
| TCTCAAATACCAACCTTATT+TGG | + | chr5.1:16868040-16868059 | MS.gene72785:intron | 30.0% | |
| TCTGTTACCTGAATTTGTAA+AGG | - | chr5.1:16867861-16867880 | None:intergenic | 30.0% | |
| TCTTGAAGAAAAGATAGTCT+CGG | + | chr5.1:16867821-16867840 | MS.gene72785:CDS | 30.0% | |
| TGAATTAGTAGATGCTTTGA+AGG | + | chr5.1:16868733-16868752 | MS.gene72785:CDS | 30.0% | |
| TGAATTTGTAAAGGGAAATC+TGG | - | chr5.1:16867852-16867871 | None:intergenic | 30.0% | |
| TTAATCACTGAAAATGGCTT+TGG | - | chr5.1:16867525-16867544 | None:intergenic | 30.0% | |
| TTGATTGGATTGAGTTTCAT+AGG | + | chr5.1:16868486-16868505 | MS.gene72785:CDS | 30.0% | |
| ! | CAAAGGTTTCTTTTATGGTT+CGG | - | chr5.1:16868008-16868027 | None:intergenic | 30.0% |
| ! | CATATTTTGTATCTCTTCCA+TGG | - | chr5.1:16868087-16868106 | None:intergenic | 30.0% |
| ! | TTCAAAGCATCTACTAATTC+AGG | - | chr5.1:16868734-16868753 | None:intergenic | 30.0% |
| !! | AAATAAGGTTGGTATTTGAG+AGG | - | chr5.1:16868041-16868060 | None:intergenic | 30.0% |
| !! | AATGTATTGTCTTTGGCTTT+CGG | + | chr5.1:16868356-16868375 | MS.gene72785:CDS | 30.0% |
| !! | GATTTGAAGTTACCTAGTTT+TGG | - | chr5.1:16867612-16867631 | None:intergenic | 30.0% |
| !! | GTGTTGGTTATATGAATCAA+AGG | + | chr5.1:16868660-16868679 | MS.gene72785:CDS | 30.0% |
| AAGCTTTCTCTGCATATGTA+TGG | + | chr5.1:16868216-16868235 | MS.gene72785:CDS | 35.0% | |
| AATCAAAGGCAAAGTGGTAA+GGG | + | chr5.1:16868674-16868693 | MS.gene72785:CDS | 35.0% | |
| AATCATTACTATCCCTTTGC+TGG | + | chr5.1:16867672-16867691 | MS.gene72785:CDS | 35.0% | |
| AGCTTCAATCTTTGTTCTCT+TGG | - | chr5.1:16868201-16868220 | None:intergenic | 35.0% | |
| AGGATTCAAGAATTGAAGGA+AGG | + | chr5.1:16868386-16868405 | MS.gene72785:CDS | 35.0% | |
| CAAATCGTTTGTGACAACAA+TGG | + | chr5.1:16867729-16867748 | MS.gene72785:CDS | 35.0% | |
| CAGGTAACAGAATTTACTTG+TGG | + | chr5.1:16867870-16867889 | MS.gene72785:intron | 35.0% | |
| CAGTGTATACCTCAATTGAA+AGG | + | chr5.1:16868633-16868652 | MS.gene72785:CDS | 35.0% | |
| CATCGGTAATGTATTGTCTT+TGG | + | chr5.1:16868349-16868368 | MS.gene72785:CDS | 35.0% | |
| GAAGGTTCATTATCAGACAT+AGG | + | chr5.1:16868404-16868423 | MS.gene72785:CDS | 35.0% | |
| GATTTGGAAGTCCTTTGTTA+GGG | + | chr5.1:16868609-16868628 | MS.gene72785:CDS | 35.0% | |
| GTAACAGAATTTACTTGTGG+TGG | + | chr5.1:16867873-16867892 | MS.gene72785:intron | 35.0% | |
| TATACCTCAATTGAAAGGGT+TGG | + | chr5.1:16868638-16868657 | MS.gene72785:CDS | 35.0% | |
| TTAGGTGATGCAACTTCATT+TGG | + | chr5.1:16867927-16867946 | MS.gene72785:intron | 35.0% | |
| TTGTTGTCACAAACGATTTG+AGG | - | chr5.1:16867729-16867748 | None:intergenic | 35.0% | |
| ! | CCTGTTAGTGAAGTTGATTT+GGG | + | chr5.1:16868587-16868606 | MS.gene72785:CDS | 35.0% |
| ! | TCCTGTTAGTGAAGTTGATT+TGG | + | chr5.1:16868586-16868605 | MS.gene72785:CDS | 35.0% |
| !! | AGTGAAGTTGATTTGGGATT+TGG | + | chr5.1:16868593-16868612 | MS.gene72785:CDS | 35.0% |
| AACACCAACCCTTTCAATTG+AGG | - | chr5.1:16868645-16868664 | None:intergenic | 40.0% | |
| CCCAAATCAACTTCACTAAC+AGG | - | chr5.1:16868590-16868609 | None:intergenic | 40.0% | |
| GAATCAAAGGCAAAGTGGTA+AGG | + | chr5.1:16868673-16868692 | MS.gene72785:CDS | 40.0% | |
| GATGGAAGAGAAAGAATGAG+TGG | + | chr5.1:16868302-16868321 | MS.gene72785:CDS | 40.0% | |
| GCAGTCATGGGATGAAAAAT+TGG | - | chr5.1:16868764-16868783 | None:intergenic | 40.0% | |
| GGATTTGGAAGTCCTTTGTT+AGG | + | chr5.1:16868608-16868627 | MS.gene72785:CDS | 40.0% | |
| GGCAAGGATTCAAGAATTGA+AGG | + | chr5.1:16868382-16868401 | MS.gene72785:CDS | 40.0% | |
| GTATACACTGTCCCTAACAA+AGG | - | chr5.1:16868623-16868642 | None:intergenic | 40.0% | |
| TAGTGGTTTCTTCAGGACAA+AGG | + | chr5.1:16868561-16868580 | MS.gene72785:CDS | 40.0% | |
| TGAACAATGTGACCAGCAAA+GGG | - | chr5.1:16867687-16867706 | None:intergenic | 40.0% | |
| TGAAGATGAGAAGCAGTCAT+GGG | - | chr5.1:16868776-16868795 | None:intergenic | 40.0% | |
| TTGAACAATGTGACCAGCAA+AGG | - | chr5.1:16867688-16867707 | None:intergenic | 40.0% | |
| ! | CAGAGACTTGCTTCTGTTTA+TGG | + | chr5.1:16868173-16868192 | MS.gene72785:intron | 40.0% |
| ! | GTGCGCAAAGGTTTCTTTTA+TGG | - | chr5.1:16868013-16868032 | None:intergenic | 40.0% |
| !! | AAGATGGGTTGGTTAGTAGA+TGG | + | chr5.1:16868284-16868303 | MS.gene72785:CDS | 40.0% |
| !! | TCAATTGAAAGGGTTGGTGT+TGG | + | chr5.1:16868644-16868663 | MS.gene72785:CDS | 40.0% |
| !! | TGGTTCGGTATGCATGATAA+CGG | - | chr5.1:16867993-16868012 | None:intergenic | 40.0% |
| AGGTTTGATGCTTGCAAAGG+CGG | + | chr5.1:16868511-16868530 | MS.gene72785:CDS | 45.0% | |
| CCTGAAGAAACCACTAAGAC+AGG | - | chr5.1:16868557-16868576 | None:intergenic | 45.0% | |
| CCTGTCTTAGTGGTTTCTTC+AGG | + | chr5.1:16868554-16868573 | MS.gene72785:CDS | 45.0% | |
| CTGAAGATGAGAAGCAGTCA+TGG | - | chr5.1:16868777-16868796 | None:intergenic | 45.0% | |
| CTGCAGCATGTTAATACTCG+AGG | - | chr5.1:16868156-16868175 | None:intergenic | 45.0% | |
| TGGATTGAGTTTCATAGGCC+AGG | + | chr5.1:16868491-16868510 | MS.gene72785:CDS | 45.0% | |
| !! | AGATGATGGACCTGTCTTAG+TGG | + | chr5.1:16868544-16868563 | MS.gene72785:CDS | 45.0% |
| !! | ATTGTCTTTGGCTTTCGGTG+AGG | + | chr5.1:16868361-16868380 | MS.gene72785:CDS | 45.0% |
| !! | GGACTGTTTCTGCTATCTTG+TGG | + | chr5.1:16868708-16868727 | MS.gene72785:CDS | 45.0% |
| AGGCAAAGTGGTAAGGGTGA+TGG | + | chr5.1:16868680-16868699 | MS.gene72785:CDS | 50.0% | |
| ATGCTTGCAAAGGCGGTGTT+AGG | + | chr5.1:16868518-16868537 | MS.gene72785:CDS | 50.0% | |
| GCCAGGTTTGATGCTTGCAA+AGG | + | chr5.1:16868508-16868527 | MS.gene72785:CDS | 50.0% | |
| GCCTTTGCAAGCATCAAACC+TGG | - | chr5.1:16868512-16868531 | None:intergenic | 50.0% | |
| ! | GCGGTGTTAGGACAAGATGA+TGG | + | chr5.1:16868530-16868549 | MS.gene72785:CDS | 50.0% |
| ! | GTGGTAAGGGTGATGGTTCA+TGG | + | chr5.1:16868687-16868706 | MS.gene72785:CDS | 50.0% |
| !! | CTTTGGCTTTCGGTGAGGCA+AGG | + | chr5.1:16868366-16868385 | MS.gene72785:CDS | 55.0% |
| TGAGAGGCGAACGTGCGCAA+AGG | - | chr5.1:16868025-16868044 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 16867426 | 16868802 | 16867426 | ID=MS.gene72785 |
| chr5.1 | mRNA | 16867426 | 16868802 | 16867426 | ID=MS.gene72785.t1;Parent=MS.gene72785 |
| chr5.1 | exon | 16867426 | 16867872 | 16867426 | ID=MS.gene72785.t1.exon1;Parent=MS.gene72785.t1 |
| chr5.1 | CDS | 16867426 | 16867872 | 16867426 | ID=cds.MS.gene72785.t1;Parent=MS.gene72785.t1 |
| chr5.1 | exon | 16868176 | 16868802 | 16868176 | ID=MS.gene72785.t1.exon2;Parent=MS.gene72785.t1 |
| chr5.1 | CDS | 16868176 | 16868802 | 16868176 | ID=cds.MS.gene72785.t1;Parent=MS.gene72785.t1 |
| Gene Sequence |
| Protein sequence |
