Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48027.t1 | XP_003617373.1 | 93 | 473 | 33 | 0 | 1 | 473 | 1 | 473 | 1.10E-258 | 902.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48027.t1 | Q8GSM7 | 24.6 | 464 | 296 | 15 | 10 | 456 | 3 | 429 | 3.6e-29 | 131.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48027.t1 | G7K3A7 | 93.0 | 473 | 33 | 0 | 1 | 473 | 1 | 473 | 7.7e-259 | 902.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48027.t1 | MTR_5g090880 | 93.658 | 473 | 30 | 0 | 1 | 473 | 1 | 473 | 0.0 | 902 |
MS.gene48027.t1 | MTR_5g090830 | 80.169 | 474 | 90 | 3 | 1 | 473 | 1 | 471 | 0.0 | 793 |
MS.gene48027.t1 | MTR_5g090810 | 78.692 | 474 | 97 | 3 | 1 | 473 | 1 | 471 | 0.0 | 780 |
MS.gene48027.t1 | MTR_3g450710 | 62.630 | 479 | 160 | 7 | 1 | 471 | 1 | 468 | 0.0 | 580 |
MS.gene48027.t1 | MTR_3g450690 | 61.042 | 480 | 170 | 6 | 1 | 471 | 1 | 472 | 0.0 | 580 |
MS.gene48027.t1 | MTR_5g026320 | 35.394 | 469 | 272 | 13 | 7 | 471 | 15 | 456 | 3.78e-74 | 241 |
MS.gene48027.t1 | MTR_8g075610 | 25.442 | 452 | 287 | 15 | 17 | 456 | 1 | 414 | 4.30e-36 | 138 |
MS.gene48027.t1 | MTR_4g007540 | 26.362 | 459 | 284 | 16 | 10 | 452 | 3 | 423 | 8.42e-36 | 138 |
MS.gene48027.t1 | MTR_2g064495 | 25.974 | 462 | 289 | 16 | 10 | 456 | 3 | 426 | 1.27e-35 | 137 |
MS.gene48027.t1 | MTR_2g105330 | 25.974 | 462 | 289 | 16 | 10 | 456 | 3 | 426 | 2.29e-35 | 136 |
MS.gene48027.t1 | MTR_8g096530 | 26.196 | 439 | 274 | 16 | 31 | 459 | 28 | 426 | 2.27e-30 | 122 |
MS.gene48027.t1 | MTR_3g098980 | 26.904 | 394 | 239 | 14 | 31 | 414 | 35 | 389 | 5.51e-28 | 115 |
MS.gene48027.t1 | MTR_1g040215 | 26.368 | 402 | 233 | 13 | 64 | 437 | 61 | 427 | 2.39e-27 | 114 |
MS.gene48027.t1 | MTR_3g049150 | 24.879 | 414 | 273 | 14 | 60 | 456 | 48 | 440 | 3.40e-27 | 114 |
MS.gene48027.t1 | MTR_7g027175 | 26.241 | 423 | 263 | 17 | 4 | 415 | 9 | 393 | 2.14e-26 | 111 |
MS.gene48027.t1 | MTR_7g114560 | 25.063 | 399 | 255 | 12 | 64 | 450 | 62 | 428 | 7.76e-26 | 110 |
MS.gene48027.t1 | MTR_7g085990 | 26.562 | 384 | 232 | 15 | 61 | 414 | 49 | 412 | 2.35e-25 | 108 |
MS.gene48027.t1 | MTR_1g040175 | 25.123 | 406 | 245 | 13 | 64 | 443 | 61 | 433 | 3.45e-25 | 108 |
MS.gene48027.t1 | MTR_7g114550 | 25.564 | 399 | 247 | 14 | 67 | 450 | 65 | 428 | 6.07e-25 | 107 |
MS.gene48027.t1 | MTR_4g127650 | 23.632 | 457 | 303 | 13 | 28 | 466 | 28 | 456 | 1.38e-24 | 106 |
MS.gene48027.t1 | MTR_7g086000 | 26.133 | 375 | 223 | 14 | 67 | 413 | 60 | 408 | 6.00e-24 | 104 |
MS.gene48027.t1 | MTR_4g097090 | 25.000 | 456 | 299 | 16 | 28 | 466 | 27 | 456 | 2.09e-23 | 102 |
MS.gene48027.t1 | MTR_7g114490 | 24.634 | 410 | 261 | 14 | 64 | 459 | 62 | 437 | 4.67e-23 | 102 |
MS.gene48027.t1 | MTR_5g076700 | 25.926 | 405 | 239 | 17 | 67 | 450 | 65 | 429 | 5.27e-23 | 101 |
MS.gene48027.t1 | MTR_7g114470 | 25.505 | 396 | 242 | 15 | 64 | 435 | 63 | 429 | 5.71e-23 | 101 |
MS.gene48027.t1 | MTR_1g081660 | 24.566 | 403 | 255 | 17 | 64 | 452 | 70 | 437 | 8.85e-23 | 100 |
MS.gene48027.t1 | MTR_3g026950 | 24.289 | 457 | 304 | 12 | 10 | 447 | 2 | 435 | 1.27e-21 | 97.4 |
MS.gene48027.t1 | MTR_7g114520 | 26.648 | 364 | 224 | 14 | 64 | 416 | 63 | 394 | 2.09e-21 | 97.1 |
MS.gene48027.t1 | MTR_7g085930 | 25.197 | 381 | 241 | 13 | 61 | 414 | 53 | 416 | 4.22e-21 | 96.3 |
MS.gene48027.t1 | MTR_7g084940 | 26.761 | 426 | 249 | 18 | 6 | 413 | 12 | 392 | 3.97e-19 | 90.1 |
MS.gene48027.t1 | MTR_1g040320 | 23.284 | 408 | 214 | 14 | 64 | 443 | 61 | 397 | 2.13e-18 | 87.8 |
MS.gene48027.t1 | MTR_1g053315 | 23.284 | 408 | 254 | 16 | 29 | 414 | 40 | 410 | 4.52e-18 | 87.0 |
MS.gene48027.t1 | MTR_1g040195 | 24.796 | 367 | 215 | 14 | 97 | 437 | 71 | 402 | 5.82e-18 | 86.3 |
MS.gene48027.t1 | MTR_3g465990 | 25.304 | 411 | 254 | 15 | 49 | 440 | 50 | 426 | 1.55e-17 | 85.1 |
MS.gene48027.t1 | MTR_7g084910 | 25.380 | 461 | 256 | 20 | 7 | 435 | 14 | 418 | 3.02e-17 | 84.3 |
MS.gene48027.t1 | MTR_3g465980 | 25.519 | 337 | 211 | 10 | 49 | 369 | 50 | 362 | 1.57e-16 | 82.0 |
MS.gene48027.t1 | MTR_3g086020 | 23.944 | 426 | 254 | 20 | 6 | 417 | 1 | 370 | 2.85e-16 | 81.3 |
MS.gene48027.t1 | MTR_1g040315 | 26.457 | 223 | 141 | 6 | 64 | 278 | 61 | 268 | 7.63e-16 | 79.7 |
MS.gene48027.t1 | MTR_4g055170 | 23.716 | 409 | 251 | 13 | 67 | 449 | 69 | 442 | 9.28e-16 | 79.7 |
MS.gene48027.t1 | MTR_8g079980 | 23.836 | 365 | 219 | 11 | 67 | 414 | 59 | 381 | 1.40e-15 | 79.0 |
MS.gene48027.t1 | MTR_3g101900 | 23.885 | 381 | 232 | 13 | 67 | 425 | 66 | 410 | 5.35e-15 | 77.4 |
MS.gene48027.t1 | MTR_2g015430 | 23.210 | 405 | 267 | 16 | 21 | 415 | 15 | 385 | 1.57e-14 | 75.9 |
MS.gene48027.t1 | MTR_8g467580 | 23.853 | 436 | 249 | 20 | 10 | 414 | 3 | 386 | 1.93e-14 | 75.5 |
MS.gene48027.t1 | MTR_7g056087 | 23.176 | 466 | 296 | 18 | 10 | 453 | 4 | 429 | 4.52e-14 | 74.3 |
MS.gene48027.t1 | MTR_3g101930 | 24.403 | 377 | 221 | 14 | 62 | 412 | 65 | 403 | 5.84e-14 | 74.3 |
MS.gene48027.t1 | MTR_4g022720 | 25.815 | 368 | 218 | 14 | 67 | 414 | 55 | 387 | 1.45e-13 | 72.8 |
MS.gene48027.t1 | MTR_3g112180 | 23.544 | 395 | 229 | 14 | 67 | 429 | 61 | 414 | 2.08e-13 | 72.4 |
MS.gene48027.t1 | MTR_3g101960 | 22.911 | 371 | 228 | 11 | 63 | 412 | 64 | 397 | 4.63e-13 | 71.2 |
MS.gene48027.t1 | MTR_8g079950 | 22.306 | 399 | 253 | 15 | 31 | 414 | 26 | 382 | 8.86e-13 | 70.5 |
MS.gene48027.t1 | MTR_4g022290 | 23.873 | 377 | 216 | 15 | 67 | 414 | 60 | 394 | 1.49e-12 | 69.7 |
MS.gene48027.t1 | MTR_6g053810 | 24.695 | 328 | 183 | 13 | 67 | 365 | 71 | 363 | 5.17e-12 | 68.2 |
MS.gene48027.t1 | MTR_4g094828 | 22.717 | 449 | 272 | 17 | 36 | 455 | 37 | 439 | 7.17e-12 | 67.8 |
MS.gene48027.t1 | MTR_3g465930 | 23.547 | 327 | 202 | 9 | 67 | 372 | 69 | 368 | 7.47e-11 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48027.t1 | AT1G78990 | 54.292 | 466 | 188 | 9 | 8 | 471 | 11 | 453 | 2.32e-162 | 467 |
MS.gene48027.t1 | AT1G32910 | 54.797 | 469 | 186 | 9 | 8 | 471 | 11 | 458 | 6.97e-161 | 463 |
MS.gene48027.t1 | AT5G16410 | 50.633 | 474 | 196 | 12 | 8 | 471 | 34 | 479 | 4.38e-151 | 439 |
MS.gene48027.t1 | AT1G31490 | 35.639 | 477 | 254 | 15 | 8 | 471 | 4 | 440 | 7.17e-76 | 245 |
MS.gene48027.t1 | AT5G48930 | 26.464 | 461 | 289 | 16 | 10 | 456 | 3 | 427 | 1.54e-34 | 134 |
MS.gene48027.t1 | AT5G41040 | 26.076 | 395 | 246 | 13 | 31 | 415 | 38 | 396 | 1.50e-27 | 114 |
MS.gene48027.t1 | AT5G41040 | 26.076 | 395 | 246 | 13 | 31 | 415 | 54 | 412 | 1.97e-27 | 114 |
MS.gene48027.t1 | AT5G57840 | 25.270 | 463 | 288 | 15 | 10 | 452 | 3 | 427 | 7.95e-27 | 112 |
MS.gene48027.t1 | AT3G26040 | 25.463 | 432 | 241 | 19 | 10 | 414 | 3 | 380 | 4.52e-25 | 107 |
MS.gene48027.t1 | AT5G17540 | 25.325 | 462 | 271 | 19 | 4 | 440 | 3 | 415 | 2.39e-24 | 105 |
MS.gene48027.t1 | AT5G63560 | 25.893 | 448 | 252 | 18 | 8 | 425 | 5 | 402 | 1.22e-23 | 103 |
MS.gene48027.t1 | AT3G03480 | 25.000 | 464 | 274 | 17 | 6 | 437 | 15 | 436 | 3.92e-23 | 102 |
MS.gene48027.t1 | AT3G48720 | 24.784 | 464 | 299 | 16 | 3 | 456 | 2 | 425 | 1.06e-22 | 100 |
MS.gene48027.t1 | AT1G65450 | 26.111 | 360 | 222 | 13 | 67 | 413 | 72 | 400 | 2.20e-21 | 97.1 |
MS.gene48027.t1 | AT1G28680 | 27.475 | 404 | 242 | 20 | 26 | 415 | 22 | 388 | 4.35e-21 | 95.9 |
MS.gene48027.t1 | AT1G24430 | 26.492 | 419 | 247 | 18 | 10 | 414 | 5 | 376 | 1.04e-20 | 94.7 |
MS.gene48027.t1 | AT2G40230 | 25.432 | 405 | 243 | 14 | 62 | 448 | 54 | 417 | 1.18e-20 | 94.7 |
MS.gene48027.t1 | AT2G19070 | 22.689 | 476 | 321 | 15 | 10 | 466 | 4 | 451 | 1.80e-20 | 94.4 |
MS.gene48027.t1 | AT5G67160 | 25.814 | 430 | 245 | 19 | 64 | 473 | 53 | 428 | 1.10e-19 | 91.7 |
MS.gene48027.t1 | AT1G27620 | 22.738 | 409 | 253 | 13 | 67 | 456 | 58 | 422 | 2.86e-19 | 90.5 |
MS.gene48027.t1 | AT3G30280 | 25.185 | 405 | 243 | 16 | 27 | 414 | 25 | 386 | 1.25e-17 | 85.5 |
MS.gene48027.t1 | AT5G47950 | 23.060 | 451 | 276 | 15 | 19 | 456 | 17 | 409 | 1.03e-15 | 79.3 |
MS.gene48027.t1 | AT4G15390 | 26.761 | 284 | 154 | 11 | 27 | 292 | 27 | 274 | 4.67e-15 | 77.4 |
MS.gene48027.t1 | AT4G15390 | 26.761 | 284 | 154 | 11 | 27 | 292 | 27 | 274 | 4.67e-15 | 77.4 |
MS.gene48027.t1 | AT1G24420 | 25.176 | 425 | 256 | 15 | 6 | 414 | 1 | 379 | 2.60e-14 | 75.1 |
MS.gene48027.t1 | AT1G24420 | 25.176 | 425 | 256 | 15 | 6 | 414 | 1 | 379 | 2.60e-14 | 75.1 |
MS.gene48027.t1 | AT5G67150 | 24.599 | 374 | 226 | 17 | 63 | 414 | 57 | 396 | 4.00e-14 | 74.7 |
MS.gene48027.t1 | AT5G23970 | 22.748 | 444 | 278 | 16 | 10 | 439 | 3 | 395 | 6.27e-14 | 73.9 |
MS.gene48027.t1 | AT2G25150 | 24.029 | 412 | 270 | 13 | 16 | 414 | 19 | 400 | 2.37e-13 | 72.4 |
MS.gene48027.t1 | AT5G47980 | 22.246 | 472 | 288 | 20 | 6 | 450 | 1 | 420 | 5.41e-13 | 71.2 |
MS.gene48027.t1 | AT3G50280 | 24.028 | 283 | 177 | 10 | 137 | 414 | 14 | 263 | 1.57e-12 | 68.9 |
MS.gene48027.t1 | AT5G42830 | 22.933 | 375 | 236 | 14 | 61 | 415 | 58 | 399 | 5.54e-12 | 68.2 |
MS.gene48027.t1 | AT3G50300 | 23.592 | 373 | 228 | 16 | 64 | 414 | 56 | 393 | 6.57e-12 | 67.8 |
MS.gene48027.t1 | AT1G65450 | 25.191 | 262 | 160 | 10 | 157 | 413 | 6 | 236 | 3.17e-11 | 64.7 |
Find 128 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCAGAGTCAAAGGTAGATTT+TGG | 0.197134 | 5.2:-76892285 | MS.gene48027:CDS |
GGATGGAAGGTGGGTGTCTT+GGG | 0.229374 | 5.2:+76892892 | None:intergenic |
TGCAACAACATTTCCACTAT+TGG | 0.271768 | 5.2:+76892632 | None:intergenic |
CCGACATTTGTGGTGTCTTC+TGG | 0.272565 | 5.2:-76892318 | MS.gene48027:CDS |
GAGTTTATGAGTTCGTATTT+TGG | 0.286533 | 5.2:-76892549 | MS.gene48027:CDS |
ACACCCCACAATAGTGTTAT+TGG | 0.294608 | 5.2:+76893473 | None:intergenic |
GTTTCTTATTACGTCTTTGC+TGG | 0.306691 | 5.2:-76893423 | MS.gene48027:CDS |
TCTGATTCGGGCTTGGGTTC+AGG | 0.310598 | 5.2:+76892819 | None:intergenic |
TTAATATCTGATTCGGGCTT+GGG | 0.319670 | 5.2:+76892813 | None:intergenic |
TTTAATATCTGATTCGGGCT+TGG | 0.321191 | 5.2:+76892812 | None:intergenic |
GAAGAGCATCGACCGGTTCC+AGG | 0.324397 | 5.2:-76892384 | MS.gene48027:CDS |
TGGATGGAAGGTGGGTGTCT+TGG | 0.324811 | 5.2:+76892891 | None:intergenic |
TAAGGAATACTTGCACTTCA+TGG | 0.338830 | 5.2:-76892145 | MS.gene48027:CDS |
ATTTCTTGGGACTAATTGAT+TGG | 0.344863 | 5.2:-76892410 | MS.gene48027:CDS |
AGGATTTATTGCGGAGTTCC+TGG | 0.347311 | 5.2:-76892354 | MS.gene48027:CDS |
CAAACATGTTTCTTGTATCA+TGG | 0.350145 | 5.2:-76892992 | MS.gene48027:CDS |
TTCTGCTTTCTTGTGGAAGA+TGG | 0.357240 | 5.2:-76892673 | MS.gene48027:CDS |
TGCCAATGCCTAGTCCTAAA+AGG | 0.369732 | 5.2:-76892200 | MS.gene48027:CDS |
ATGAGATTGGTCTAAAGAAA+TGG | 0.371643 | 5.2:+76892109 | None:intergenic |
AAGAACACACCAATACTAAC+AGG | 0.372400 | 5.2:+76893531 | None:intergenic |
AAGAAACATGTTTGTAGAAT+AGG | 0.374201 | 5.2:+76893001 | None:intergenic |
GGACACGAAAGAACATTTCT+TGG | 0.384547 | 5.2:-76892424 | MS.gene48027:CDS |
TTCCCTTCAATGGTTTCCTC+TGG | 0.385000 | 5.2:+76893288 | None:intergenic |
TGGAACAAGCTTCCCTTCAA+TGG | 0.386738 | 5.2:+76893278 | None:intergenic |
AGCTGCAACTACCTCCTCTT+TGG | 0.387741 | 5.2:+76893611 | None:intergenic |
ACATGGTGTGCTTGCTGTTC+AGG | 0.388373 | 5.2:-76893247 | MS.gene48027:intron |
ATTCCTTGTGGTGGTGATGC+TGG | 0.393172 | 5.2:-76892231 | MS.gene48027:CDS |
TTACGTCTTTGCTGGTGAAA+TGG | 0.396605 | 5.2:-76893415 | MS.gene48027:CDS |
TCGGGCTTGGGTTCAGGTGG+AGG | 0.406362 | 5.2:+76892825 | None:intergenic |
GTGGGTGTCTTGGGGTCAAA+AGG | 0.407163 | 5.2:+76892901 | None:intergenic |
CAATAAATCCTTGCCAGCCC+TGG | 0.423385 | 5.2:+76892366 | None:intergenic |
CGCTCTGTAACCCAACATAA+TGG | 0.424141 | 5.2:+76892471 | None:intergenic |
TGAGATTGGTCTAAAGAAAT+GGG | 0.424402 | 5.2:+76892110 | None:intergenic |
ATGAATCCTATGATTACTAT+TGG | 0.425230 | 5.2:-76893501 | MS.gene48027:CDS |
CTAATCACTAAAATGAGTAT+TGG | 0.430164 | 5.2:-76893660 | None:intergenic |
TGTTGAAAAGCCATTATGTT+GGG | 0.431386 | 5.2:-76892481 | MS.gene48027:CDS |
CCAAAATCTACCTTTGACTC+TGG | 0.435822 | 5.2:+76892285 | None:intergenic |
GCATCGACCGGTTCCAGGGC+TGG | 0.439356 | 5.2:-76892379 | MS.gene48027:CDS |
ATCCTTGCCAGCCCTGGAAC+CGG | 0.444779 | 5.2:+76892372 | None:intergenic |
GCTTCCACTATTATTTGTGT+TGG | 0.455348 | 5.2:+76892722 | None:intergenic |
CCTATGTTCTTGCATTGCCT+TGG | 0.455581 | 5.2:+76893587 | None:intergenic |
GACACGAAAGAACATTTCTT+GGG | 0.462909 | 5.2:-76892423 | MS.gene48027:CDS |
ACCACCAATAACACTATTGT+GGG | 0.470153 | 5.2:-76893477 | MS.gene48027:CDS |
TTTCTTGGGACTAATTGATT+GGG | 0.478579 | 5.2:-76892409 | MS.gene48027:CDS |
TCTATTAATTTACAACTGTA+GGG | 0.479476 | 5.2:+76892510 | None:intergenic |
ATGAAGTGCAAGTATTCCTT+AGG | 0.482803 | 5.2:+76892147 | None:intergenic |
GGCTTGGGTTCAGGTGGAGG+AGG | 0.482969 | 5.2:+76892828 | None:intergenic |
ATTGCTCGAGCGGGCTATCT+CGG | 0.484103 | 5.2:+76892968 | None:intergenic |
ATTTCTTTAGACCAATCTCA+TGG | 0.487418 | 5.2:-76892107 | MS.gene48027:CDS |
GTCCTAAAAGGAATGGTGAT+TGG | 0.487820 | 5.2:-76892188 | MS.gene48027:CDS |
AGAAGGTAATCCCATGAGAT+TGG | 0.494084 | 5.2:+76892096 | None:intergenic |
TTCTATTAATTTACAACTGT+AGG | 0.494706 | 5.2:+76892509 | None:intergenic |
GACCGGTTCCAGGGCTGGCA+AGG | 0.497114 | 5.2:-76892374 | MS.gene48027:CDS |
CGGTTGTTGCAAAGTAGCTC+AGG | 0.499190 | 5.2:+76893372 | None:intergenic |
AAACATGTTTCTTGTATCAT+GGG | 0.502267 | 5.2:-76892991 | MS.gene48027:CDS |
TCAGCCGCTTCAACCAATAG+TGG | 0.504854 | 5.2:-76892645 | MS.gene48027:CDS |
AGTACATGCGACTTATTAGC+TGG | 0.506554 | 5.2:+76892784 | None:intergenic |
GGATCTTATCATATTCCTTG+TGG | 0.513474 | 5.2:-76892243 | MS.gene48027:CDS |
GATGGAAGGTGGGTGTCTTG+GGG | 0.526099 | 5.2:+76892893 | None:intergenic |
CTAGCCAACACAAATAATAG+TGG | 0.526578 | 5.2:-76892726 | MS.gene48027:CDS |
CACCACCAATAACACTATTG+TGG | 0.528613 | 5.2:-76893478 | MS.gene48027:CDS |
GTGAAGGATGGATGGAAGGT+GGG | 0.534125 | 5.2:+76892883 | None:intergenic |
GTCATAGAGTGAAGGATGGA+TGG | 0.535942 | 5.2:+76892875 | None:intergenic |
AAGCCAGAGGAAACCATTGA+AGG | 0.538348 | 5.2:-76893291 | MS.gene48027:CDS |
GATTCGGGCTTGGGTTCAGG+TGG | 0.543751 | 5.2:+76892822 | None:intergenic |
GATCTACATGAATCTTCCTA+AGG | 0.548247 | 5.2:-76892163 | MS.gene48027:CDS |
AGAAACAAGAGCCTCAGCTA+AGG | 0.548714 | 5.2:+76893440 | None:intergenic |
TTGTTGAAAAGCCATTATGT+TGG | 0.550086 | 5.2:-76892482 | MS.gene48027:CDS |
GTCGGTCCATCTGCTCCACC+AGG | 0.550954 | 5.2:+76892336 | None:intergenic |
TGGGTGTCTTGGGGTCAAAA+GGG | 0.554761 | 5.2:+76892902 | None:intergenic |
GTATAATTGAGCAGGCAACT+TGG | 0.556181 | 5.2:-76893079 | MS.gene48027:intron |
GGAGGTAGTTGCAGCTACCA+AGG | 0.558424 | 5.2:-76893604 | MS.gene48027:CDS |
AGTGAAGGATGGATGGAAGG+TGG | 0.560310 | 5.2:+76892882 | None:intergenic |
CCAAGGCAATGCAAGAACAT+AGG | 0.562331 | 5.2:-76893587 | MS.gene48027:CDS |
GTGGTGCCAATAGTAATCAT+AGG | 0.562421 | 5.2:+76893495 | None:intergenic |
TGGAGGAGGTAGATCCGAGA+TGG | 0.563260 | 5.2:+76892842 | None:intergenic |
AATATGATAAGATCCAACTA+CGG | 0.564107 | 5.2:+76892251 | None:intergenic |
TAGAGTGAAGGATGGATGGA+AGG | 0.564472 | 5.2:+76892879 | None:intergenic |
CAGGCAACTTGGATGAAATG+TGG | 0.564539 | 5.2:-76893068 | MS.gene48027:CDS |
AGGCAACTTGGATGAAATGT+GGG | 0.566639 | 5.2:-76893067 | MS.gene48027:CDS |
ATTTCCACTATTGGTTGAAG+CGG | 0.566759 | 5.2:+76892641 | None:intergenic |
CTTGGGACTAATTGATTGGG+TGG | 0.567048 | 5.2:-76892406 | MS.gene48027:CDS |
AGACTTGTTATTGCTCGAGC+GGG | 0.569461 | 5.2:+76892959 | None:intergenic |
ACAAAGATTTCCAGAGTCAA+AGG | 0.570544 | 5.2:-76892295 | MS.gene48027:CDS |
GGAGTTCCTGGTGGAGCAGA+TGG | 0.571944 | 5.2:-76892342 | MS.gene48027:CDS |
TGAAATGGTCACTAACTCCA+TGG | 0.576847 | 5.2:-76893400 | MS.gene48027:CDS |
AGCCAGAGGAAACCATTGAA+GGG | 0.581302 | 5.2:-76893290 | MS.gene48027:CDS |
AAAAGGGACCTCTGAAAACA+AGG | 0.581419 | 5.2:+76892918 | None:intergenic |
CCCCACAATAGTGTTATTGG+TGG | 0.583667 | 5.2:+76893476 | None:intergenic |
TCTTATCATATTCCTTGTGG+TGG | 0.583934 | 5.2:-76892240 | MS.gene48027:CDS |
AAGAGCATCGACCGGTTCCA+GGG | 0.585377 | 5.2:-76892383 | MS.gene48027:CDS |
TTTCTTTAGACCAATCTCAT+GGG | 0.587261 | 5.2:-76892106 | MS.gene48027:CDS |
ATGCCTAGTCCTAAAAGGAA+TGG | 0.590231 | 5.2:-76892195 | MS.gene48027:CDS |
ATATGATAAGATCCAACTAC+GGG | 0.599022 | 5.2:+76892252 | None:intergenic |
TGGCATGCAACTTTGACCAT+CGG | 0.600034 | 5.2:-76893034 | MS.gene48027:CDS |
AAGACTTGTTATTGCTCGAG+CGG | 0.603884 | 5.2:+76892958 | None:intergenic |
AAGTAGCTCAGGTTCACCCA+TGG | 0.604674 | 5.2:+76893383 | None:intergenic |
ACTTTGCAACAACCGTGGTG+TGG | 0.609718 | 5.2:-76893364 | MS.gene48027:CDS |
TTGGGTGGAAGAGCATCGAC+CGG | 0.614426 | 5.2:-76892391 | MS.gene48027:CDS |
AGCAGATGGACCGACATTTG+TGG | 0.619293 | 5.2:-76892328 | MS.gene48027:CDS |
AATAGGCGTCCGCTATCCGA+TGG | 0.620621 | 5.2:+76893018 | None:intergenic |
TGACATGTACATCTCCATCT+CGG | 0.620929 | 5.2:-76892856 | MS.gene48027:CDS |
TGTGTTGGCTAGTAACTGCA+TGG | 0.621948 | 5.2:+76892737 | None:intergenic |
ATGTACATGTCATAGAGTGA+AGG | 0.625954 | 5.2:+76892867 | None:intergenic |
CAGTGTGAATATTACCAAAG+AGG | 0.626621 | 5.2:-76893625 | MS.gene48027:CDS |
CAACTTTGACCATCGGATAG+CGG | 0.635631 | 5.2:-76893027 | MS.gene48027:CDS |
CCAGAAGACACCACAAATGT+CGG | 0.636633 | 5.2:+76892318 | None:intergenic |
CTTGTTCCAAAGAAAACACA+TGG | 0.639769 | 5.2:-76893264 | MS.gene48027:CDS |
ATTTATTGCGGAGTTCCTGG+TGG | 0.643183 | 5.2:-76892351 | MS.gene48027:CDS |
GAACACACCAATACTAACAG+GGG | 0.649933 | 5.2:+76893533 | None:intergenic |
GGCAACTTGGATGAAATGTG+GGG | 0.657336 | 5.2:-76893066 | MS.gene48027:CDS |
AAAATGGGGATTGTGGTCGA+CGG | 0.658600 | 5.2:-76892609 | MS.gene48027:CDS |
GGAAGAATGAGATTAAGCAA+TGG | 0.658733 | 5.2:-76892588 | MS.gene48027:CDS |
TGTGAATATTACCAAAGAGG+AGG | 0.660805 | 5.2:-76893622 | MS.gene48027:CDS |
GCAACTTGGATGAAATGTGG+GGG | 0.664532 | 5.2:-76893065 | MS.gene48027:CDS |
AGAACACACCAATACTAACA+GGG | 0.664943 | 5.2:+76893532 | None:intergenic |
TCTCAATTTGCATAAGCCAG+AGG | 0.668470 | 5.2:-76893304 | MS.gene48027:CDS |
GGGCTGGCAAGGATTTATTG+CGG | 0.669488 | 5.2:-76892363 | MS.gene48027:CDS |
GAAATGGTCACTAACTCCAT+GGG | 0.670922 | 5.2:-76893399 | MS.gene48027:CDS |
ACATGTCATAGAGTGAAGGA+TGG | 0.670976 | 5.2:+76892871 | None:intergenic |
TAGCCAGCATCACCACCACA+AGG | 0.673907 | 5.2:+76892228 | None:intergenic |
GAGATTGGTCTAAAGAAATG+GGG | 0.682938 | 5.2:+76892111 | None:intergenic |
GGAATACTTGCACTTCATGG+AGG | 0.690260 | 5.2:-76892142 | MS.gene48027:CDS |
CCACCAATAACACTATTGTG+GGG | 0.693360 | 5.2:-76893476 | MS.gene48027:CDS |
AACACACCAATACTAACAGG+GGG | 0.696942 | 5.2:+76893534 | None:intergenic |
GAGCTACTTTGCAACAACCG+TGG | 0.705966 | 5.2:-76893369 | MS.gene48027:CDS |
CAACTTGGATGAAATGTGGG+GGG | 0.712514 | 5.2:-76893064 | MS.gene48027:CDS |
CTTCAACAAAATCCACACCA+CGG | 0.748079 | 5.2:+76893352 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAGAATTATTATCATTATGC+AGG | - | chr5.2:76892581-76892600 | MS.gene48027:CDS | 20.0% |
!! | TCTATTAATTTACAACTGTA+GGG | + | chr5.2:76893230-76893249 | None:intergenic | 20.0% |
!! | TTCTATTAATTTACAACTGT+AGG | + | chr5.2:76893231-76893250 | None:intergenic | 20.0% |
!!! | GTTTGTTTTAATATCTGATT+CGG | + | chr5.2:76892934-76892953 | None:intergenic | 20.0% |
!!! | TTTGTTTTAATATCTGATTC+GGG | + | chr5.2:76892933-76892952 | None:intergenic | 20.0% |
! | AAACATGTTTCTTGTATCAT+GGG | - | chr5.2:76892746-76892765 | MS.gene48027:CDS | 25.0% |
! | AAGAAACATGTTTGTAGAAT+AGG | + | chr5.2:76892739-76892758 | None:intergenic | 25.0% |
! | AATATGATAAGATCCAACTA+CGG | + | chr5.2:76893489-76893508 | None:intergenic | 25.0% |
! | AATTGTATGTATAATTGAGC+AGG | - | chr5.2:76892650-76892669 | MS.gene48027:CDS | 25.0% |
! | ATGAATCCTATGATTACTAT+TGG | - | chr5.2:76892236-76892255 | MS.gene48027:CDS | 25.0% |
!! | AGTTTATGAGTTCGTATTTT+GGG | - | chr5.2:76893189-76893208 | MS.gene48027:intron | 25.0% |
!!! | ACAAAAACATTTTGATCTCA+AGG | - | chr5.2:76892541-76892560 | MS.gene48027:CDS | 25.0% |
!!! | CAAAAACATTTTGATCTCAA+GGG | - | chr5.2:76892542-76892561 | MS.gene48027:CDS | 25.0% |
ATATGATAAGATCCAACTAC+GGG | + | chr5.2:76893488-76893507 | None:intergenic | 30.0% | |
ATTTCTTGGGACTAATTGAT+TGG | - | chr5.2:76893327-76893346 | MS.gene48027:CDS | 30.0% | |
ATTTCTTTAGACCAATCTCA+TGG | - | chr5.2:76893630-76893649 | MS.gene48027:CDS | 30.0% | |
CAAACATGTTTCTTGTATCA+TGG | - | chr5.2:76892745-76892764 | MS.gene48027:CDS | 30.0% | |
GAAATGTTGTTGCAAAAATG+GGG | - | chr5.2:76893114-76893133 | MS.gene48027:intron | 30.0% | |
GGAAATGTTGTTGCAAAAAT+GGG | - | chr5.2:76893113-76893132 | MS.gene48027:intron | 30.0% | |
TGGAAATGTTGTTGCAAAAA+TGG | - | chr5.2:76893112-76893131 | MS.gene48027:intron | 30.0% | |
TGTTGAAAAGCCATTATGTT+GGG | - | chr5.2:76893256-76893275 | MS.gene48027:CDS | 30.0% | |
TTGTTGAAAAGCCATTATGT+TGG | - | chr5.2:76893255-76893274 | MS.gene48027:CDS | 30.0% | |
TTTCTTGGGACTAATTGATT+GGG | - | chr5.2:76893328-76893347 | MS.gene48027:CDS | 30.0% | |
TTTCTTTAGACCAATCTCAT+GGG | - | chr5.2:76893631-76893650 | MS.gene48027:CDS | 30.0% | |
! | AATCATTTTCTGCTTTCTTG+TGG | - | chr5.2:76893057-76893076 | MS.gene48027:CDS | 30.0% |
! | GAGTTTATGAGTTCGTATTT+TGG | - | chr5.2:76893188-76893207 | MS.gene48027:intron | 30.0% |
!! | ATGAGATTGGTCTAAAGAAA+TGG | + | chr5.2:76893631-76893650 | None:intergenic | 30.0% |
!! | TGAGATTGGTCTAAAGAAAT+GGG | + | chr5.2:76893630-76893649 | None:intergenic | 30.0% |
AAGAACACACCAATACTAAC+AGG | + | chr5.2:76892209-76892228 | None:intergenic | 35.0% | |
ACAAAGATTTCCAGAGTCAA+AGG | - | chr5.2:76893442-76893461 | MS.gene48027:CDS | 35.0% | |
ACCACCAATAACACTATTGT+GGG | - | chr5.2:76892260-76892279 | MS.gene48027:CDS | 35.0% | |
AGAACACACCAATACTAACA+GGG | + | chr5.2:76892208-76892227 | None:intergenic | 35.0% | |
ATGAAGTGCAAGTATTCCTT+AGG | + | chr5.2:76893593-76893612 | None:intergenic | 35.0% | |
ATGTACATGTCATAGAGTGA+AGG | + | chr5.2:76892873-76892892 | None:intergenic | 35.0% | |
CAGTGTGAATATTACCAAAG+AGG | - | chr5.2:76892112-76892131 | MS.gene48027:CDS | 35.0% | |
CTAGCCAACACAAATAATAG+TGG | - | chr5.2:76893011-76893030 | MS.gene48027:CDS | 35.0% | |
CTTGTTCCAAAGAAAACACA+TGG | - | chr5.2:76892473-76892492 | MS.gene48027:CDS | 35.0% | |
GACACGAAAGAACATTTCTT+GGG | - | chr5.2:76893314-76893333 | MS.gene48027:CDS | 35.0% | |
GATCTACATGAATCTTCCTA+AGG | - | chr5.2:76893574-76893593 | MS.gene48027:CDS | 35.0% | |
GCTTCCACTATTATTTGTGT+TGG | + | chr5.2:76893018-76893037 | None:intergenic | 35.0% | |
GGAAGAATGAGATTAAGCAA+TGG | - | chr5.2:76893149-76893168 | MS.gene48027:intron | 35.0% | |
GGATCTTATCATATTCCTTG+TGG | - | chr5.2:76893494-76893513 | MS.gene48027:CDS | 35.0% | |
GTTTCTTATTACGTCTTTGC+TGG | - | chr5.2:76892314-76892333 | MS.gene48027:CDS | 35.0% | |
TAAGGAATACTTGCACTTCA+TGG | - | chr5.2:76893592-76893611 | MS.gene48027:CDS | 35.0% | |
TCTTATCATATTCCTTGTGG+TGG | - | chr5.2:76893497-76893516 | MS.gene48027:CDS | 35.0% | |
TGCAACAACATTTCCACTAT+TGG | + | chr5.2:76893108-76893127 | None:intergenic | 35.0% | |
TGTGAATATTACCAAAGAGG+AGG | - | chr5.2:76892115-76892134 | MS.gene48027:CDS | 35.0% | |
TTTGAAAAACTCCTTAGCTG+AGG | - | chr5.2:76892286-76892305 | MS.gene48027:CDS | 35.0% | |
! | AACCAATCACCATTCCTTTT+AGG | + | chr5.2:76893554-76893573 | None:intergenic | 35.0% |
! | AGTCAAAGGTAGATTTTGGA+TGG | - | chr5.2:76893456-76893475 | MS.gene48027:CDS | 35.0% |
! | ATTTCCACTATTGGTTGAAG+CGG | + | chr5.2:76893099-76893118 | None:intergenic | 35.0% |
! | GTCAAAGGTAGATTTTGGAT+GGG | - | chr5.2:76893457-76893476 | MS.gene48027:CDS | 35.0% |
! | TCAAAGGTAGATTTTGGATG+GGG | - | chr5.2:76893458-76893477 | MS.gene48027:CDS | 35.0% |
!! | GAGATTGGTCTAAAGAAATG+GGG | + | chr5.2:76893629-76893648 | None:intergenic | 35.0% |
!! | TTAATATCTGATTCGGGCTT+GGG | + | chr5.2:76892927-76892946 | None:intergenic | 35.0% |
!! | TTTAATATCTGATTCGGGCT+TGG | + | chr5.2:76892928-76892947 | None:intergenic | 35.0% |
!!! | AGAGCGAGTTCATGATTTTT+TGG | - | chr5.2:76893283-76893302 | MS.gene48027:CDS | 35.0% |
AACACACCAATACTAACAGG+GGG | + | chr5.2:76892206-76892225 | None:intergenic | 40.0% | |
ACACCCCACAATAGTGTTAT+TGG | + | chr5.2:76892267-76892286 | None:intergenic | 40.0% | |
ACATGTCATAGAGTGAAGGA+TGG | + | chr5.2:76892869-76892888 | None:intergenic | 40.0% | |
AGAAGGTAATCCCATGAGAT+TGG | + | chr5.2:76893644-76893663 | None:intergenic | 40.0% | |
AGGCAACTTGGATGAAATGT+GGG | - | chr5.2:76892670-76892689 | MS.gene48027:CDS | 40.0% | |
AGTACATGCGACTTATTAGC+TGG | + | chr5.2:76892956-76892975 | None:intergenic | 40.0% | |
ATGCCTAGTCCTAAAAGGAA+TGG | - | chr5.2:76893542-76893561 | MS.gene48027:CDS | 40.0% | |
CACCACCAATAACACTATTG+TGG | - | chr5.2:76892259-76892278 | MS.gene48027:CDS | 40.0% | |
CCAAAATCTACCTTTGACTC+TGG | + | chr5.2:76893455-76893474 | None:intergenic | 40.0% | |
CCACCAATAACACTATTGTG+GGG | - | chr5.2:76892261-76892280 | MS.gene48027:CDS | 40.0% | |
CTTCAACAAAATCCACACCA+CGG | + | chr5.2:76892388-76892407 | None:intergenic | 40.0% | |
GAAATGGTCACTAACTCCAT+GGG | - | chr5.2:76892338-76892357 | MS.gene48027:CDS | 40.0% | |
GAACACACCAATACTAACAG+GGG | + | chr5.2:76892207-76892226 | None:intergenic | 40.0% | |
GGACACGAAAGAACATTTCT+TGG | - | chr5.2:76893313-76893332 | MS.gene48027:CDS | 40.0% | |
GTATAATTGAGCAGGCAACT+TGG | - | chr5.2:76892658-76892677 | MS.gene48027:CDS | 40.0% | |
GTCCTAAAAGGAATGGTGAT+TGG | - | chr5.2:76893549-76893568 | MS.gene48027:CDS | 40.0% | |
TCTCAATTTGCATAAGCCAG+AGG | - | chr5.2:76892433-76892452 | MS.gene48027:CDS | 40.0% | |
TGAAATGGTCACTAACTCCA+TGG | - | chr5.2:76892337-76892356 | MS.gene48027:CDS | 40.0% | |
TGACATGTACATCTCCATCT+CGG | - | chr5.2:76892881-76892900 | MS.gene48027:CDS | 40.0% | |
TGTTGCAAAAATGGGGATTG+TGG | - | chr5.2:76893121-76893140 | MS.gene48027:intron | 40.0% | |
TTACGTCTTTGCTGGTGAAA+TGG | - | chr5.2:76892322-76892341 | MS.gene48027:CDS | 40.0% | |
TTCTGCTTTCTTGTGGAAGA+TGG | - | chr5.2:76893064-76893083 | MS.gene48027:CDS | 40.0% | |
! | AAAAGGGACCTCTGAAAACA+AGG | + | chr5.2:76892822-76892841 | None:intergenic | 40.0% |
! | AGCACACCATGTGTTTTCTT+TGG | + | chr5.2:76892482-76892501 | None:intergenic | 40.0% |
! | CAAAGGTAGATTTTGGATGG+GGG | - | chr5.2:76893459-76893478 | MS.gene48027:CDS | 40.0% |
! | CCAGAGTCAAAGGTAGATTT+TGG | - | chr5.2:76893452-76893471 | MS.gene48027:CDS | 40.0% |
! | GTGGTGCCAATAGTAATCAT+AGG | + | chr5.2:76892245-76892264 | None:intergenic | 40.0% |
!! | AAGACTTGTTATTGCTCGAG+CGG | + | chr5.2:76892782-76892801 | None:intergenic | 40.0% |
!!! | CAACACAACCTTGTTTTCAG+AGG | - | chr5.2:76892811-76892830 | MS.gene48027:CDS | 40.0% |
!!! | GCGAGTTCATGATTTTTTGG+AGG | - | chr5.2:76893286-76893305 | MS.gene48027:CDS | 40.0% |
!!! | TCACCATTCCTTTTAGGACT+AGG | + | chr5.2:76893548-76893567 | None:intergenic | 40.0% |
!!! | TCATGATTTTTTGGAGGCTG+CGG | - | chr5.2:76893292-76893311 | MS.gene48027:CDS | 40.0% |
!!! | TTCCTTTTAGGACTAGGCAT+TGG | + | chr5.2:76893542-76893561 | None:intergenic | 40.0% |
AAAATGGGGATTGTGGTCGA+CGG | - | chr5.2:76893128-76893147 | MS.gene48027:intron | 45.0% | |
AAGCCAGAGGAAACCATTGA+AGG | - | chr5.2:76892446-76892465 | MS.gene48027:CDS | 45.0% | |
AGAAACAAGAGCCTCAGCTA+AGG | + | chr5.2:76892300-76892319 | None:intergenic | 45.0% | |
AGCCAGAGGAAACCATTGAA+GGG | - | chr5.2:76892447-76892466 | MS.gene48027:CDS | 45.0% | |
AGGATTTATTGCGGAGTTCC+TGG | - | chr5.2:76893383-76893402 | MS.gene48027:CDS | 45.0% | |
ATTTATTGCGGAGTTCCTGG+TGG | - | chr5.2:76893386-76893405 | MS.gene48027:CDS | 45.0% | |
CAACTTGGATGAAATGTGGG+GGG | - | chr5.2:76892673-76892692 | MS.gene48027:CDS | 45.0% | |
CAACTTTGACCATCGGATAG+CGG | - | chr5.2:76892710-76892729 | MS.gene48027:CDS | 45.0% | |
CAGGCAACTTGGATGAAATG+TGG | - | chr5.2:76892669-76892688 | MS.gene48027:CDS | 45.0% | |
CCAAGGCAATGCAAGAACAT+AGG | - | chr5.2:76892150-76892169 | MS.gene48027:CDS | 45.0% | |
CCAGAAGACACCACAAATGT+CGG | + | chr5.2:76893422-76893441 | None:intergenic | 45.0% | |
CCTATGTTCTTGCATTGCCT+TGG | + | chr5.2:76892153-76892172 | None:intergenic | 45.0% | |
CGCTCTGTAACCCAACATAA+TGG | + | chr5.2:76893269-76893288 | None:intergenic | 45.0% | |
CTACTTCCCCCTGTTAGTAT+TGG | - | chr5.2:76892197-76892216 | MS.gene48027:CDS | 45.0% | |
CTTGGGACTAATTGATTGGG+TGG | - | chr5.2:76893331-76893350 | MS.gene48027:CDS | 45.0% | |
GCAACTTGGATGAAATGTGG+GGG | - | chr5.2:76892672-76892691 | MS.gene48027:CDS | 45.0% | |
GGAATACTTGCACTTCATGG+AGG | - | chr5.2:76893595-76893614 | MS.gene48027:CDS | 45.0% | |
GGCAACTTGGATGAAATGTG+GGG | - | chr5.2:76892671-76892690 | MS.gene48027:CDS | 45.0% | |
GTCATAGAGTGAAGGATGGA+TGG | + | chr5.2:76892865-76892884 | None:intergenic | 45.0% | |
TAGAGTGAAGGATGGATGGA+AGG | + | chr5.2:76892861-76892880 | None:intergenic | 45.0% | |
TGCCAATGCCTAGTCCTAAA+AGG | - | chr5.2:76893537-76893556 | MS.gene48027:CDS | 45.0% | |
TGGAACAAGCTTCCCTTCAA+TGG | + | chr5.2:76892462-76892481 | None:intergenic | 45.0% | |
TGGCATGCAACTTTGACCAT+CGG | - | chr5.2:76892703-76892722 | MS.gene48027:CDS | 45.0% | |
TTCCCTTCAATGGTTTCCTC+TGG | + | chr5.2:76892452-76892471 | None:intergenic | 45.0% | |
! | CCCCACAATAGTGTTATTGG+TGG | + | chr5.2:76892264-76892283 | None:intergenic | 45.0% |
!! | AGACTTGTTATTGCTCGAGC+GGG | + | chr5.2:76892781-76892800 | None:intergenic | 45.0% |
!! | TGTGTTGGCTAGTAACTGCA+TGG | + | chr5.2:76893003-76893022 | None:intergenic | 45.0% |
AAGTAGCTCAGGTTCACCCA+TGG | + | chr5.2:76892357-76892376 | None:intergenic | 50.0% | |
ACTTTGCAACAACCGTGGTG+TGG | - | chr5.2:76892373-76892392 | MS.gene48027:CDS | 50.0% | |
AGCAGATGGACCGACATTTG+TGG | - | chr5.2:76893409-76893428 | MS.gene48027:CDS | 50.0% | |
AGCTGCAACTACCTCCTCTT+TGG | + | chr5.2:76892129-76892148 | None:intergenic | 50.0% | |
AGTGAAGGATGGATGGAAGG+TGG | + | chr5.2:76892858-76892877 | None:intergenic | 50.0% | |
CAATAAATCCTTGCCAGCCC+TGG | + | chr5.2:76893374-76893393 | None:intergenic | 50.0% | |
CCGACATTTGTGGTGTCTTC+TGG | - | chr5.2:76893419-76893438 | MS.gene48027:CDS | 50.0% | |
CGGTTGTTGCAAAGTAGCTC+AGG | + | chr5.2:76892368-76892387 | None:intergenic | 50.0% | |
GTGAAGGATGGATGGAAGGT+GGG | + | chr5.2:76892857-76892876 | None:intergenic | 50.0% | |
TCAGCCGCTTCAACCAATAG+TGG | - | chr5.2:76893092-76893111 | MS.gene48027:intron | 50.0% | |
TGGGTGTCTTGGGGTCAAAA+GGG | + | chr5.2:76892838-76892857 | None:intergenic | 50.0% | |
! | ATTCCTTGTGGTGGTGATGC+TGG | - | chr5.2:76893506-76893525 | MS.gene48027:CDS | 50.0% |
! | GAAATGTGGGGGGTTAGTAG+TGG | - | chr5.2:76892683-76892702 | MS.gene48027:CDS | 50.0% |
! | GAGCTACTTTGCAACAACCG+TGG | - | chr5.2:76892368-76892387 | MS.gene48027:CDS | 50.0% |
! | GGGCTGGCAAGGATTTATTG+CGG | - | chr5.2:76893374-76893393 | MS.gene48027:CDS | 50.0% |
!! | ACATGGTGTGCTTGCTGTTC+AGG | - | chr5.2:76892490-76892509 | MS.gene48027:CDS | 50.0% |
AATAGGCGTCCGCTATCCGA+TGG | + | chr5.2:76892722-76892741 | None:intergenic | 55.0% | |
GATGGAAGGTGGGTGTCTTG+GGG | + | chr5.2:76892847-76892866 | None:intergenic | 55.0% | |
GGAGGTAGTTGCAGCTACCA+AGG | - | chr5.2:76892133-76892152 | MS.gene48027:CDS | 55.0% | |
GGATGGAAGGTGGGTGTCTT+GGG | + | chr5.2:76892848-76892867 | None:intergenic | 55.0% | |
GTGGGTGTCTTGGGGTCAAA+AGG | + | chr5.2:76892839-76892858 | None:intergenic | 55.0% | |
TAGCCAGCATCACCACCACA+AGG | + | chr5.2:76893512-76893531 | None:intergenic | 55.0% | |
TGGAGGAGGTAGATCCGAGA+TGG | + | chr5.2:76892898-76892917 | None:intergenic | 55.0% | |
TGGATGGAAGGTGGGTGTCT+TGG | + | chr5.2:76892849-76892868 | None:intergenic | 55.0% | |
!! | AAGAGCATCGACCGGTTCCA+GGG | - | chr5.2:76893354-76893373 | MS.gene48027:CDS | 55.0% |
!! | ATTGCTCGAGCGGGCTATCT+CGG | + | chr5.2:76892772-76892791 | None:intergenic | 55.0% |
!! | TCTGATTCGGGCTTGGGTTC+AGG | + | chr5.2:76892921-76892940 | None:intergenic | 55.0% |
!! | TTGGGTGGAAGAGCATCGAC+CGG | - | chr5.2:76893346-76893365 | MS.gene48027:CDS | 55.0% |
ATCCTTGCCAGCCCTGGAAC+CGG | + | chr5.2:76893368-76893387 | None:intergenic | 60.0% | |
GATTCGGGCTTGGGTTCAGG+TGG | + | chr5.2:76892918-76892937 | None:intergenic | 60.0% | |
GGAGTTCCTGGTGGAGCAGA+TGG | - | chr5.2:76893395-76893414 | MS.gene48027:CDS | 60.0% | |
GGATGGGGGAAACCCGTAGT+TGG | - | chr5.2:76893473-76893492 | MS.gene48027:CDS | 60.0% | |
!! | GAAGAGCATCGACCGGTTCC+AGG | - | chr5.2:76893353-76893372 | MS.gene48027:CDS | 60.0% |
GGCTTGGGTTCAGGTGGAGG+AGG | + | chr5.2:76892912-76892931 | None:intergenic | 65.0% | |
GTCGGTCCATCTGCTCCACC+AGG | + | chr5.2:76893404-76893423 | None:intergenic | 65.0% | |
TCGGGCTTGGGTTCAGGTGG+AGG | + | chr5.2:76892915-76892934 | None:intergenic | 65.0% | |
! | GACCGGTTCCAGGGCTGGCA+AGG | - | chr5.2:76893363-76893382 | MS.gene48027:CDS | 70.0% |
! | GCATCGACCGGTTCCAGGGC+TGG | - | chr5.2:76893358-76893377 | MS.gene48027:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 76892089 | 76893670 | 76892089 | ID=MS.gene48027 |
chr5.2 | mRNA | 76892089 | 76893670 | 76892089 | ID=MS.gene48027.t1;Parent=MS.gene48027 |
chr5.2 | exon | 76893248 | 76893670 | 76893248 | ID=MS.gene48027.t1.exon1;Parent=MS.gene48027.t1 |
chr5.2 | CDS | 76893248 | 76893670 | 76893248 | ID=cds.MS.gene48027.t1;Parent=MS.gene48027.t1 |
chr5.2 | exon | 76892089 | 76893087 | 76892089 | ID=MS.gene48027.t1.exon2;Parent=MS.gene48027.t1 |
chr5.2 | CDS | 76892089 | 76893087 | 76892089 | ID=cds.MS.gene48027.t1;Parent=MS.gene48027.t1 |
Gene Sequence |
Protein sequence |