AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene017058


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene017058.t1 MTR_5g090880 93.658 473 30 0 1 473 1 473 0.0 904
MS.gene017058.t1 MTR_5g090830 80.591 474 88 3 1 473 1 471 0.0 798
MS.gene017058.t1 MTR_5g090810 79.114 474 95 3 1 473 1 471 0.0 785
MS.gene017058.t1 MTR_3g450710 63.466 479 156 7 1 471 1 468 0.0 590
MS.gene017058.t1 MTR_3g450690 61.667 480 167 6 1 471 1 472 0.0 585
MS.gene017058.t1 MTR_5g026320 34.968 469 274 13 7 471 15 456 7.25e-73 237
MS.gene017058.t1 MTR_8g075610 26.269 453 282 16 17 456 1 414 3.46e-37 141
MS.gene017058.t1 MTR_4g007540 27.430 463 274 18 10 452 3 423 6.01e-37 141
MS.gene017058.t1 MTR_2g064495 26.566 463 285 17 10 456 3 426 2.93e-36 139
MS.gene017058.t1 MTR_2g105330 26.566 463 285 17 10 456 3 426 5.45e-36 138
MS.gene017058.t1 MTR_8g096530 26.802 444 265 18 31 459 28 426 1.23e-29 120
MS.gene017058.t1 MTR_3g049150 24.879 414 273 14 60 456 48 440 2.39e-27 114
MS.gene017058.t1 MTR_3g098980 26.650 394 240 14 31 414 35 389 1.00e-26 112
MS.gene017058.t1 MTR_7g027175 26.241 423 263 17 4 415 9 393 3.25e-26 110
MS.gene017058.t1 MTR_1g040215 26.316 399 237 14 64 437 61 427 3.63e-26 111
MS.gene017058.t1 MTR_7g114560 24.812 399 256 11 64 450 62 428 4.39e-26 110
MS.gene017058.t1 MTR_7g085990 27.013 385 229 16 61 414 49 412 1.39e-25 109
MS.gene017058.t1 MTR_4g127650 24.017 458 300 13 28 466 28 456 3.14e-25 108
MS.gene017058.t1 MTR_7g086000 26.933 375 220 15 67 413 60 408 3.37e-25 108
MS.gene017058.t1 MTR_7g114550 25.564 399 247 13 67 450 65 428 4.80e-25 107
MS.gene017058.t1 MTR_4g097090 25.219 456 298 16 28 466 27 456 2.90e-24 105
MS.gene017058.t1 MTR_1g040175 24.755 408 244 13 64 443 61 433 4.21e-24 105
MS.gene017058.t1 MTR_5g076700 26.173 405 238 17 67 450 65 429 1.10e-23 103
MS.gene017058.t1 MTR_7g114490 24.510 408 264 12 64 459 62 437 3.81e-23 102
MS.gene017058.t1 MTR_7g114470 25.505 396 242 15 64 435 63 429 5.93e-23 101
MS.gene017058.t1 MTR_1g081660 24.876 402 255 17 64 452 70 437 8.37e-23 101
MS.gene017058.t1 MTR_7g085930 27.154 383 231 16 61 414 53 416 7.84e-22 98.2
MS.gene017058.t1 MTR_7g114520 25.558 403 254 15 64 452 63 433 2.36e-21 96.7
MS.gene017058.t1 MTR_3g026950 24.764 424 279 11 10 414 2 404 2.90e-21 96.7
MS.gene017058.t1 MTR_1g053315 23.544 412 248 17 29 414 40 410 1.29e-18 88.6
MS.gene017058.t1 MTR_3g465990 25.000 412 254 15 49 440 50 426 4.44e-18 87.0
MS.gene017058.t1 MTR_1g040320 22.549 408 217 13 64 443 61 397 1.57e-17 85.1
MS.gene017058.t1 MTR_3g465980 25.519 337 211 10 49 369 50 362 6.39e-17 83.2
MS.gene017058.t1 MTR_3g086020 24.408 422 257 20 6 417 1 370 5.89e-16 80.1
MS.gene017058.t1 MTR_1g040315 26.549 226 137 6 64 278 61 268 1.24e-15 79.0
MS.gene017058.t1 MTR_7g084910 24.892 462 257 21 7 435 14 418 1.96e-15 78.6
MS.gene017058.t1 MTR_8g467580 23.624 436 250 20 10 414 3 386 1.26e-14 76.3
MS.gene017058.t1 MTR_3g112180 24.747 396 223 15 67 429 61 414 1.38e-14 76.3
MS.gene017058.t1 MTR_3g070170 22.326 430 237 15 60 439 59 441 1.43e-14 76.3
MS.gene017058.t1 MTR_3g088420 24.263 441 263 17 36 455 32 422 1.60e-14 75.9
MS.gene017058.t1 MTR_8g079980 23.288 365 221 11 67 414 59 381 1.63e-14 75.9
MS.gene017058.t1 MTR_4g055170 22.983 409 254 13 67 449 69 442 2.75e-14 75.1
MS.gene017058.t1 MTR_3g101900 23.360 381 234 13 67 425 66 410 4.54e-14 74.3
MS.gene017058.t1 MTR_2g015430 22.716 405 269 16 21 415 15 385 7.82e-14 73.9
MS.gene017058.t1 MTR_7g056087 22.366 465 301 17 10 453 4 429 1.13e-13 73.2
MS.gene017058.t1 MTR_3g101930 24.138 377 222 14 62 412 65 403 3.44e-13 71.6
MS.gene017058.t1 MTR_4g022720 25.068 367 222 13 67 414 55 387 9.85e-13 70.1
MS.gene017058.t1 MTR_8g041770 23.778 450 262 19 26 452 25 416 6.00e-12 67.8
MS.gene017058.t1 MTR_4g022290 23.545 378 216 16 67 414 60 394 1.36e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene017058.t1 AT1G32910 55.011 469 185 9 8 471 11 458 4.41e-161 464
MS.gene017058.t1 AT1G78990 53.846 468 187 9 8 471 11 453 8.28e-161 463
MS.gene017058.t1 AT5G16410 50.422 474 197 12 8 471 34 479 5.54e-149 434
MS.gene017058.t1 AT1G31490 35.430 477 255 15 8 471 4 440 6.50e-75 242
MS.gene017058.t1 AT5G48930 26.395 466 283 16 10 456 3 427 1.09e-36 140
MS.gene017058.t1 AT5G41040 26.768 396 242 14 31 415 38 396 4.07e-29 119
MS.gene017058.t1 AT5G41040 26.768 396 242 14 31 415 54 412 4.99e-29 119
MS.gene017058.t1 AT5G57840 25.270 463 288 15 10 452 3 427 1.12e-26 112
MS.gene017058.t1 AT3G03480 25.926 405 231 15 64 437 70 436 1.01e-23 103
MS.gene017058.t1 AT3G48720 25.107 466 295 16 3 456 2 425 1.53e-23 103
MS.gene017058.t1 AT5G63560 25.446 448 254 17 8 425 5 402 2.22e-23 102
MS.gene017058.t1 AT5G17540 25.216 464 269 20 4 440 3 415 4.88e-23 102
MS.gene017058.t1 AT3G26040 24.645 422 257 16 10 414 3 380 6.91e-23 101
MS.gene017058.t1 AT1G28680 27.228 404 243 20 26 415 22 388 6.83e-21 95.5
MS.gene017058.t1 AT1G24430 26.253 419 248 18 10 414 5 376 1.70e-20 94.0
MS.gene017058.t1 AT1G65450 25.556 360 224 13 67 413 72 400 2.24e-20 94.0
MS.gene017058.t1 AT2G40230 25.310 403 246 15 62 448 54 417 7.14e-20 92.0
MS.gene017058.t1 AT1G27620 23.134 402 260 14 67 456 58 422 7.30e-20 92.4
MS.gene017058.t1 AT2G19070 23.904 456 304 16 28 466 22 451 8.31e-20 92.0
MS.gene017058.t1 AT5G67160 25.581 430 246 19 64 473 53 428 2.72e-19 90.5
MS.gene017058.t1 AT1G28680 27.500 360 220 18 26 371 22 354 3.94e-18 86.7
MS.gene017058.t1 AT3G50280 23.861 373 229 13 63 414 55 393 1.66e-17 85.1
MS.gene017058.t1 AT5G47950 22.944 462 283 16 10 456 6 409 8.00e-16 79.7
MS.gene017058.t1 AT3G30280 24.938 405 244 16 27 414 25 386 8.66e-16 79.7
MS.gene017058.t1 AT4G15390 26.408 284 155 11 27 292 27 274 1.62e-14 75.9
MS.gene017058.t1 AT4G15390 26.408 284 155 11 27 292 27 274 1.62e-14 75.9
MS.gene017058.t1 AT5G67150 24.129 373 229 15 63 414 57 396 2.19e-14 75.5
MS.gene017058.t1 AT1G24420 24.186 430 254 14 6 414 1 379 1.64e-13 72.8
MS.gene017058.t1 AT1G24420 24.186 430 254 14 6 414 1 379 1.64e-13 72.8
MS.gene017058.t1 AT5G47980 21.962 469 293 19 6 450 1 420 2.07e-13 72.4
MS.gene017058.t1 AT5G23970 23.182 440 281 16 10 439 3 395 2.32e-13 72.4
MS.gene017058.t1 AT2G25150 23.786 412 271 13 16 414 19 400 4.43e-13 71.6
MS.gene017058.t1 AT3G50300 23.035 369 235 14 64 414 56 393 6.46e-12 67.8
MS.gene017058.t1 AT5G42830 22.667 375 237 15 61 415 58 399 8.78e-12 67.4
MS.gene017058.t1 AT5G07860 22.105 380 223 13 62 415 67 399 2.35e-11 66.2

Find 127 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGAGTCAAAGGTAGATTT+TGG 0.197134 5.1:-72221710 MS.gene017058:CDS
GGATGGAAGGTGGGTGTCTT+GGG 0.229374 5.1:+72222317 None:intergenic
TGCAACAACATTTCCACTAT+TGG 0.271768 5.1:+72222057 None:intergenic
GAGTTTATGAGTTCGTATTT+TGG 0.286533 5.1:-72221974 MS.gene017058:CDS
ACACCCCACAATAGTGTTAT+TGG 0.294608 5.1:+72222898 None:intergenic
GTTTCTTATTACGTCTTTGC+TGG 0.306691 5.1:-72222848 MS.gene017058:CDS
TCTGAATCGGGCTTGGGTTC+AGG 0.320014 5.1:+72222244 None:intergenic
GAAGAGCATCGACCGGTTCC+AGG 0.324397 5.1:-72221809 MS.gene017058:CDS
TGGATGGAAGGTGGGTGTCT+TGG 0.324811 5.1:+72222316 None:intergenic
TAAGGAATACTTGCACTTCA+TGG 0.338830 5.1:-72221570 MS.gene017058:CDS
TTTAATATCTGAATCGGGCT+TGG 0.341597 5.1:+72222237 None:intergenic
ATTTCTTGGGACTAATTGAT+TGG 0.344863 5.1:-72221835 MS.gene017058:CDS
AGGATTTATTGCGGAGTTCC+TGG 0.347311 5.1:-72221779 MS.gene017058:CDS
CAAACATGTTTCTTGTATCA+TGG 0.356132 5.1:-72222417 MS.gene017058:CDS
TTCTGCTTTCTTGTGGAAGA+TGG 0.357240 5.1:-72222098 MS.gene017058:CDS
CCGACATTTGTGGTGTCTTC+CGG 0.359537 5.1:-72221743 MS.gene017058:CDS
TGCCAATGCCTAGTCCTAAA+AGG 0.369732 5.1:-72221625 MS.gene017058:CDS
ATGAGATTGGTCTAAAGAAA+TGG 0.371643 5.1:+72221534 None:intergenic
AAGAACACACCAATACTAAC+AGG 0.372400 5.1:+72222956 None:intergenic
AAGAAACATGTTTGTAGAAT+AGG 0.374201 5.1:+72222426 None:intergenic
GGACACGGAAGAACATTTCT+TGG 0.384547 5.1:-72221849 MS.gene017058:CDS
TTCCCTTCAATGGTTTCCTC+TGG 0.385000 5.1:+72222713 None:intergenic
TGGAACAAGCTTCCCTTCAA+TGG 0.386738 5.1:+72222703 None:intergenic
ACATGGTGTGCTTGCTGTTC+AGG 0.388373 5.1:-72222672 MS.gene017058:intron
TTAATATCTGAATCGGGCTT+GGG 0.393064 5.1:+72222238 None:intergenic
ATTCCTTGTGGTGGTGATGC+TGG 0.393172 5.1:-72221656 MS.gene017058:CDS
TTACGTCTTTGCTGGTGAAA+TGG 0.396605 5.1:-72222840 MS.gene017058:CDS
GTGGGTGTCTTGGGGTCAAA+AGG 0.407163 5.1:+72222326 None:intergenic
CAATAAATCCTTGCCAGCCC+TGG 0.423385 5.1:+72221791 None:intergenic
CGCTCTGTAACCCAACATAA+TGG 0.424141 5.1:+72221896 None:intergenic
TGAGATTGGTCTAAAGAAAT+GGG 0.424402 5.1:+72221535 None:intergenic
ATGAATCCTATGATTACTAT+TGG 0.425230 5.1:-72222926 MS.gene017058:CDS
CTAATCACTAAAATGAGTAT+TGG 0.430164 5.1:-72223085 None:intergenic
CCAAAATCTACCTTTGACTC+TGG 0.435822 5.1:+72221710 None:intergenic
TCGGGCTTGGGTTCAGGTGG+AGG 0.436924 5.1:+72222250 None:intergenic
GCATCGACCGGTTCCAGGGC+TGG 0.439356 5.1:-72221804 MS.gene017058:CDS
ATCCTTGCCAGCCCTGGAAC+CGG 0.444779 5.1:+72221797 None:intergenic
TGTTGACAAGCCATTATGTT+GGG 0.447475 5.1:-72221906 MS.gene017058:CDS
CCTATGTTCTTGCATTGCCT+TGG 0.455581 5.1:+72223012 None:intergenic
GACACGGAAGAACATTTCTT+GGG 0.462909 5.1:-72221848 MS.gene017058:CDS
ACCACCAATAACACTATTGT+GGG 0.470153 5.1:-72222902 MS.gene017058:CDS
TTTCTTGGGACTAATTGATT+GGG 0.478579 5.1:-72221834 MS.gene017058:CDS
TCTATTAATTTACAACTGTA+GGG 0.479476 5.1:+72221935 None:intergenic
ATGAAGTGCAAGTATTCCTT+AGG 0.482803 5.1:+72221572 None:intergenic
AAACATGTTTCTTGTATCAT+GGG 0.484767 5.1:-72222416 MS.gene017058:CDS
ATTTCTTTAGACCAATCTCA+TGG 0.487418 5.1:-72221532 MS.gene017058:CDS
GTCCTAAAAGGAATGGTGAT+TGG 0.487820 5.1:-72221613 MS.gene017058:CDS
TGACTCTGGAAATCTTTGTC+CGG 0.488713 5.1:+72221724 None:intergenic
AGAAGGTAATCCCATGAGAT+TGG 0.494084 5.1:+72221521 None:intergenic
TTCTATTAATTTACAACTGT+AGG 0.494706 5.1:+72221934 None:intergenic
GACCGGTTCCAGGGCTGGCA+AGG 0.497114 5.1:-72221799 MS.gene017058:CDS
CGGTTGTTGCAAAGTAGCTC+AGG 0.499190 5.1:+72222797 None:intergenic
GGCTTGGGTTCAGGTGGAGG+AGG 0.502810 5.1:+72222253 None:intergenic
TCAGCCGCTTCAACCAATAG+TGG 0.504854 5.1:-72222070 MS.gene017058:CDS
GGATCTTATCATATTCCTTG+TGG 0.513474 5.1:-72221668 MS.gene017058:CDS
GATGGAAGGTGGGTGTCTTG+GGG 0.526099 5.1:+72222318 None:intergenic
CACCACCAATAACACTATTG+TGG 0.528613 5.1:-72222903 MS.gene017058:CDS
GTGAAGGATGGATGGAAGGT+GGG 0.534125 5.1:+72222308 None:intergenic
GTCATAGAGTGAAGGATGGA+TGG 0.535942 5.1:+72222300 None:intergenic
AAGCCAGAGGAAACCATTGA+AGG 0.538348 5.1:-72222716 MS.gene017058:CDS
GATCTACATGAATCTTCCTA+AGG 0.548247 5.1:-72221588 MS.gene017058:CDS
AGAAACAAGAGCCTCAGCTA+AGG 0.548714 5.1:+72222865 None:intergenic
GTCGGTCCATCTGCTCCACC+AGG 0.550954 5.1:+72221761 None:intergenic
TGGGTGTCTTGGGGTCAAAA+GGG 0.554761 5.1:+72222327 None:intergenic
GTATAATTGTGCAGGCAACT+TGG 0.557460 5.1:-72222504 MS.gene017058:intron
GAATCGGGCTTGGGTTCAGG+TGG 0.560265 5.1:+72222247 None:intergenic
AGTGAAGGATGGATGGAAGG+TGG 0.560310 5.1:+72222307 None:intergenic
CCAAGGCAATGCAAGAACAT+AGG 0.562331 5.1:-72223012 MS.gene017058:CDS
GTGGTGCCAATAGTAATCAT+AGG 0.562421 5.1:+72222920 None:intergenic
TGGAGGAGGTAGATCCGAGA+TGG 0.563260 5.1:+72222267 None:intergenic
AATATGATAAGATCCAACTA+CGG 0.564107 5.1:+72221676 None:intergenic
TAGAGTGAAGGATGGATGGA+AGG 0.564472 5.1:+72222304 None:intergenic
CAGGCAACTTGGATGAAATG+TGG 0.566561 5.1:-72222493 MS.gene017058:CDS
ATTTCCACTATTGGTTGAAG+CGG 0.566759 5.1:+72222066 None:intergenic
CTTGGGACTAATTGATTGGG+TGG 0.567048 5.1:-72221831 MS.gene017058:CDS
AGACTTGTTATTGCTCGAGC+GGG 0.569461 5.1:+72222384 None:intergenic
GGAGTTCCTGGTGGAGCAGA+TGG 0.571944 5.1:-72221767 MS.gene017058:CDS
TGTGTTGGCTAGTAACTGCA+TGG 0.574899 5.1:+72222162 None:intergenic
TGAAATGGTCACTAACTCCA+TGG 0.576847 5.1:-72222825 MS.gene017058:CDS
AGGCAACTTGGATGAAATGT+GGG 0.579164 5.1:-72222492 MS.gene017058:CDS
TTGTTGACAAGCCATTATGT+TGG 0.579826 5.1:-72221907 MS.gene017058:CDS
TAGTACATGCGACTTATTAG+CGG 0.580648 5.1:+72222208 None:intergenic
AGCCAGAGGAAACCATTGAA+GGG 0.581302 5.1:-72222715 MS.gene017058:CDS
AAAAGGGACCTCTGAAAACA+AGG 0.581419 5.1:+72222343 None:intergenic
AGTACATGCGACTTATTAGC+GGG 0.583367 5.1:+72222209 None:intergenic
CCCCACAATAGTGTTATTGG+TGG 0.583667 5.1:+72222901 None:intergenic
ACAAAGATTTCCAGAGTCAA+AGG 0.583703 5.1:-72221720 MS.gene017058:CDS
TCTTATCATATTCCTTGTGG+TGG 0.583934 5.1:-72221665 MS.gene017058:CDS
AAGAGCATCGACCGGTTCCA+GGG 0.585377 5.1:-72221808 MS.gene017058:CDS
ATATGATAAGATCCAACTAC+GGG 0.585755 5.1:+72221677 None:intergenic
TTTCTTTAGACCAATCTCAT+GGG 0.587261 5.1:-72221531 MS.gene017058:CDS
ATGCCTAGTCCTAAAAGGAA+TGG 0.590231 5.1:-72221620 MS.gene017058:CDS
TGGCATGCAACTTTGACCAT+CGG 0.600034 5.1:-72222459 MS.gene017058:CDS
AAGACTTGTTATTGCTCGAG+CGG 0.603884 5.1:+72222383 None:intergenic
AAGTAGCTCAGGTTCACCCA+TGG 0.604674 5.1:+72222808 None:intergenic
AGCTGCAACTACCTCCTCGT+TGG 0.607766 5.1:+72223036 None:intergenic
ACTTTGCAACAACCGTGGTG+TGG 0.609718 5.1:-72222789 MS.gene017058:CDS
TTGGGTGGAAGAGCATCGAC+CGG 0.614426 5.1:-72221816 MS.gene017058:CDS
AGCAGATGGACCGACATTTG+TGG 0.619293 5.1:-72221753 MS.gene017058:CDS
GGAGGTAGTTGCAGCTACCA+AGG 0.620571 5.1:-72223029 MS.gene017058:CDS
AATAGGCGTCCGCTATCCGA+TGG 0.620621 5.1:+72222443 None:intergenic
TGACATGTACATCTCCATCT+CGG 0.620929 5.1:-72222281 MS.gene017058:CDS
ATGTACATGTCATAGAGTGA+AGG 0.625954 5.1:+72222292 None:intergenic
CCGGAAGACACCACAAATGT+CGG 0.632982 5.1:+72221743 None:intergenic
CAACTTTGACCATCGGATAG+CGG 0.635631 5.1:-72222452 MS.gene017058:CDS
CTTGTTCCAAAGAAAACACA+TGG 0.639769 5.1:-72222689 MS.gene017058:CDS
ATTTATTGCGGAGTTCCTGG+TGG 0.643183 5.1:-72221776 MS.gene017058:CDS
GAACACACCAATACTAACAG+GGG 0.649933 5.1:+72222958 None:intergenic
AAAATGGGGATTGTGGTCGA+CGG 0.658600 5.1:-72222034 MS.gene017058:CDS
GGAAGAATGAGATTAAGCAA+TGG 0.658733 5.1:-72222013 MS.gene017058:CDS
GCAACTTGGATGAAATGTGG+GGG 0.664532 5.1:-72222490 MS.gene017058:CDS
AGAACACACCAATACTAACA+GGG 0.664943 5.1:+72222957 None:intergenic
TCTCAATTTGCATAAGCCAG+AGG 0.668470 5.1:-72222729 MS.gene017058:CDS
GGGCTGGCAAGGATTTATTG+CGG 0.669488 5.1:-72221788 MS.gene017058:CDS
GAAATGGTCACTAACTCCAT+GGG 0.670922 5.1:-72222824 MS.gene017058:CDS
ACATGTCATAGAGTGAAGGA+TGG 0.670976 5.1:+72222296 None:intergenic
TAGCCAGCATCACCACCACA+AGG 0.673907 5.1:+72221653 None:intergenic
GGCAACTTGGATGAAATGTG+GGG 0.674719 5.1:-72222491 MS.gene017058:CDS
GAGATTGGTCTAAAGAAATG+GGG 0.682938 5.1:+72221536 None:intergenic
GGAATACTTGCACTTCATGG+AGG 0.690260 5.1:-72221567 MS.gene017058:CDS
CCACCAATAACACTATTGTG+GGG 0.693360 5.1:-72222901 MS.gene017058:CDS
AACACACCAATACTAACAGG+GGG 0.696942 5.1:+72222959 None:intergenic
GAGCTACTTTGCAACAACCG+TGG 0.705966 5.1:-72222794 MS.gene017058:CDS
CAACTTGGATGAAATGTGGG+GGG 0.712514 5.1:-72222489 MS.gene017058:CDS
TGTGAATATTACCAACGAGG+AGG 0.715768 5.1:-72223047 MS.gene017058:CDS
CAGTGTGAATATTACCAACG+AGG 0.720907 5.1:-72223050 MS.gene017058:CDS
CTTCAACAAAATCCACACCA+CGG 0.748079 5.1:+72222777 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAATTATTATCATTATGC+AGG - chr5.1:72222006-72222025 MS.gene017058:CDS 20.0%
!! TCTATTAATTTACAACTGTA+GGG + chr5.1:72222655-72222674 None:intergenic 20.0%
!! TTCTATTAATTTACAACTGT+AGG + chr5.1:72222656-72222675 None:intergenic 20.0%
!!! GTTTGTTTTAATATCTGAAT+CGG + chr5.1:72222359-72222378 None:intergenic 20.0%
!!! TTTGTTTTAATATCTGAATC+GGG + chr5.1:72222358-72222377 None:intergenic 20.0%
! AAACATGTTTCTTGTATCAT+GGG - chr5.1:72222171-72222190 MS.gene017058:CDS 25.0%
! AAGAAACATGTTTGTAGAAT+AGG + chr5.1:72222164-72222183 None:intergenic 25.0%
! AATATGATAAGATCCAACTA+CGG + chr5.1:72222914-72222933 None:intergenic 25.0%
! AATTGTATGTATAATTGTGC+AGG - chr5.1:72222075-72222094 MS.gene017058:CDS 25.0%
! ATGAATCCTATGATTACTAT+TGG - chr5.1:72221661-72221680 MS.gene017058:CDS 25.0%
!! AGTTTATGAGTTCGTATTTT+GGG - chr5.1:72222614-72222633 MS.gene017058:intron 25.0%
!!! ACAAAAACATTTTGATCTCA+AGG - chr5.1:72221966-72221985 MS.gene017058:CDS 25.0%
!!! CAAAAACATTTTGATCTCAA+GGG - chr5.1:72221967-72221986 MS.gene017058:CDS 25.0%
ATATGATAAGATCCAACTAC+GGG + chr5.1:72222913-72222932 None:intergenic 30.0%
ATTTCTTGGGACTAATTGAT+TGG - chr5.1:72222752-72222771 MS.gene017058:CDS 30.0%
ATTTCTTTAGACCAATCTCA+TGG - chr5.1:72223055-72223074 MS.gene017058:CDS 30.0%
CAAACATGTTTCTTGTATCA+TGG - chr5.1:72222170-72222189 MS.gene017058:CDS 30.0%
GAAATGTTGTTGCAAAAATG+GGG - chr5.1:72222539-72222558 MS.gene017058:intron 30.0%
GGAAATGTTGTTGCAAAAAT+GGG - chr5.1:72222538-72222557 MS.gene017058:intron 30.0%
TGGAAATGTTGTTGCAAAAA+TGG - chr5.1:72222537-72222556 MS.gene017058:intron 30.0%
TTTCTTGGGACTAATTGATT+GGG - chr5.1:72222753-72222772 MS.gene017058:CDS 30.0%
TTTCTTTAGACCAATCTCAT+GGG - chr5.1:72223056-72223075 MS.gene017058:CDS 30.0%
! AATCATTTTCTGCTTTCTTG+TGG - chr5.1:72222482-72222501 MS.gene017058:CDS 30.0%
! GAGTTTATGAGTTCGTATTT+TGG - chr5.1:72222613-72222632 MS.gene017058:intron 30.0%
!! ATGAGATTGGTCTAAAGAAA+TGG + chr5.1:72223056-72223075 None:intergenic 30.0%
!! TGAGATTGGTCTAAAGAAAT+GGG + chr5.1:72223055-72223074 None:intergenic 30.0%
AAGAACACACCAATACTAAC+AGG + chr5.1:72221634-72221653 None:intergenic 35.0%
ACAAAGATTTCCAGAGTCAA+AGG - chr5.1:72222867-72222886 MS.gene017058:CDS 35.0%
ACCACCAATAACACTATTGT+GGG - chr5.1:72221685-72221704 MS.gene017058:CDS 35.0%
AGAACACACCAATACTAACA+GGG + chr5.1:72221633-72221652 None:intergenic 35.0%
ATGAAGTGCAAGTATTCCTT+AGG + chr5.1:72223018-72223037 None:intergenic 35.0%
ATGTACATGTCATAGAGTGA+AGG + chr5.1:72222298-72222317 None:intergenic 35.0%
CTAGCCAACACAAAAAATAG+TGG - chr5.1:72222436-72222455 MS.gene017058:CDS 35.0%
CTTGTTCCAAAGAAAACACA+TGG - chr5.1:72221898-72221917 MS.gene017058:CDS 35.0%
GATCTACATGAATCTTCCTA+AGG - chr5.1:72222999-72223018 MS.gene017058:CDS 35.0%
GGAAGAATGAGATTAAGCAA+TGG - chr5.1:72222574-72222593 MS.gene017058:intron 35.0%
GGATCTTATCATATTCCTTG+TGG - chr5.1:72222919-72222938 MS.gene017058:CDS 35.0%
GTTTCTTATTACGTCTTTGC+TGG - chr5.1:72221739-72221758 MS.gene017058:CDS 35.0%
TAAGGAATACTTGCACTTCA+TGG - chr5.1:72223017-72223036 MS.gene017058:CDS 35.0%
TAGTACATGCGACTTATTAG+CGG + chr5.1:72222382-72222401 None:intergenic 35.0%
TCTTATCATATTCCTTGTGG+TGG - chr5.1:72222922-72222941 MS.gene017058:CDS 35.0%
TGCAACAACATTTCCACTAT+TGG + chr5.1:72222533-72222552 None:intergenic 35.0%
TGTTGACAAGCCATTATGTT+GGG - chr5.1:72222681-72222700 MS.gene017058:CDS 35.0%
TTAATATCTGAATCGGGCTT+GGG + chr5.1:72222352-72222371 None:intergenic 35.0%
TTGTTGACAAGCCATTATGT+TGG - chr5.1:72222680-72222699 MS.gene017058:CDS 35.0%
TTTAATATCTGAATCGGGCT+TGG + chr5.1:72222353-72222372 None:intergenic 35.0%
TTTGAAAAACTCCTTAGCTG+AGG - chr5.1:72221711-72221730 MS.gene017058:CDS 35.0%
! AACCAATCACCATTCCTTTT+AGG + chr5.1:72222979-72222998 None:intergenic 35.0%
! AGTCAAAGGTAGATTTTGGA+TGG - chr5.1:72222881-72222900 MS.gene017058:CDS 35.0%
! ATTTCCACTATTGGTTGAAG+CGG + chr5.1:72222524-72222543 None:intergenic 35.0%
! GTCAAAGGTAGATTTTGGAT+GGG - chr5.1:72222882-72222901 MS.gene017058:CDS 35.0%
! TCAAAGGTAGATTTTGGATG+GGG - chr5.1:72222883-72222902 MS.gene017058:CDS 35.0%
!! GAGATTGGTCTAAAGAAATG+GGG + chr5.1:72223054-72223073 None:intergenic 35.0%
!!! GCTTCCACTATTTTTTGTGT+TGG + chr5.1:72222443-72222462 None:intergenic 35.0%
AACACACCAATACTAACAGG+GGG + chr5.1:72221631-72221650 None:intergenic 40.0%
ACACCCCACAATAGTGTTAT+TGG + chr5.1:72221692-72221711 None:intergenic 40.0%
ACATGTCATAGAGTGAAGGA+TGG + chr5.1:72222294-72222313 None:intergenic 40.0%
AGAAGGTAATCCCATGAGAT+TGG + chr5.1:72223069-72223088 None:intergenic 40.0%
AGGCAACTTGGATGAAATGT+GGG - chr5.1:72222095-72222114 MS.gene017058:CDS 40.0%
AGTACATGCGACTTATTAGC+GGG + chr5.1:72222381-72222400 None:intergenic 40.0%
ATGCCTAGTCCTAAAAGGAA+TGG - chr5.1:72222967-72222986 MS.gene017058:CDS 40.0%
CACCACCAATAACACTATTG+TGG - chr5.1:72221684-72221703 MS.gene017058:CDS 40.0%
CAGTGTGAATATTACCAACG+AGG - chr5.1:72221537-72221556 MS.gene017058:CDS 40.0%
CCAAAATCTACCTTTGACTC+TGG + chr5.1:72222880-72222899 None:intergenic 40.0%
CCACCAATAACACTATTGTG+GGG - chr5.1:72221686-72221705 MS.gene017058:CDS 40.0%
CTTCAACAAAATCCACACCA+CGG + chr5.1:72221813-72221832 None:intergenic 40.0%
GAAATGGTCACTAACTCCAT+GGG - chr5.1:72221763-72221782 MS.gene017058:CDS 40.0%
GAACACACCAATACTAACAG+GGG + chr5.1:72221632-72221651 None:intergenic 40.0%
GACACGGAAGAACATTTCTT+GGG - chr5.1:72222739-72222758 MS.gene017058:CDS 40.0%
GTATAATTGTGCAGGCAACT+TGG - chr5.1:72222083-72222102 MS.gene017058:CDS 40.0%
GTCCTAAAAGGAATGGTGAT+TGG - chr5.1:72222974-72222993 MS.gene017058:CDS 40.0%
TCTCAATTTGCATAAGCCAG+AGG - chr5.1:72221858-72221877 MS.gene017058:CDS 40.0%
TGAAATGGTCACTAACTCCA+TGG - chr5.1:72221762-72221781 MS.gene017058:CDS 40.0%
TGACATGTACATCTCCATCT+CGG - chr5.1:72222306-72222325 MS.gene017058:CDS 40.0%
TGTGAATATTACCAACGAGG+AGG - chr5.1:72221540-72221559 MS.gene017058:CDS 40.0%
TGTTGCAAAAATGGGGATTG+TGG - chr5.1:72222546-72222565 MS.gene017058:intron 40.0%
TTACGTCTTTGCTGGTGAAA+TGG - chr5.1:72221747-72221766 MS.gene017058:CDS 40.0%
TTCTGCTTTCTTGTGGAAGA+TGG - chr5.1:72222489-72222508 MS.gene017058:CDS 40.0%
! AAAAGGGACCTCTGAAAACA+AGG + chr5.1:72222247-72222266 None:intergenic 40.0%
! AGAGCGAGTTCATGATTTTC+TGG - chr5.1:72222708-72222727 MS.gene017058:CDS 40.0%
! AGCACACCATGTGTTTTCTT+TGG + chr5.1:72221907-72221926 None:intergenic 40.0%
! CAAAGGTAGATTTTGGATGG+GGG - chr5.1:72222884-72222903 MS.gene017058:CDS 40.0%
! CCAGAGTCAAAGGTAGATTT+TGG - chr5.1:72222877-72222896 MS.gene017058:CDS 40.0%
! GTGGTGCCAATAGTAATCAT+AGG + chr5.1:72221670-72221689 None:intergenic 40.0%
! TGACTCTGGAAATCTTTGTC+CGG + chr5.1:72222866-72222885 None:intergenic 40.0%
!! AAGACTTGTTATTGCTCGAG+CGG + chr5.1:72222207-72222226 None:intergenic 40.0%
!!! CAACACAACCTTGTTTTCAG+AGG - chr5.1:72222236-72222255 MS.gene017058:CDS 40.0%
!!! TCACCATTCCTTTTAGGACT+AGG + chr5.1:72222973-72222992 None:intergenic 40.0%
!!! TTCCTTTTAGGACTAGGCAT+TGG + chr5.1:72222967-72222986 None:intergenic 40.0%
AAAATGGGGATTGTGGTCGA+CGG - chr5.1:72222553-72222572 MS.gene017058:intron 45.0%
AAGCCAGAGGAAACCATTGA+AGG - chr5.1:72221871-72221890 MS.gene017058:CDS 45.0%
AGAAACAAGAGCCTCAGCTA+AGG + chr5.1:72221725-72221744 None:intergenic 45.0%
AGCCAGAGGAAACCATTGAA+GGG - chr5.1:72221872-72221891 MS.gene017058:CDS 45.0%
AGGATTTATTGCGGAGTTCC+TGG - chr5.1:72222808-72222827 MS.gene017058:CDS 45.0%
ATTTATTGCGGAGTTCCTGG+TGG - chr5.1:72222811-72222830 MS.gene017058:CDS 45.0%
CAACTTGGATGAAATGTGGG+GGG - chr5.1:72222098-72222117 MS.gene017058:CDS 45.0%
CAACTTTGACCATCGGATAG+CGG - chr5.1:72222135-72222154 MS.gene017058:CDS 45.0%
CAGGCAACTTGGATGAAATG+TGG - chr5.1:72222094-72222113 MS.gene017058:CDS 45.0%
CCAAGGCAATGCAAGAACAT+AGG - chr5.1:72221575-72221594 MS.gene017058:CDS 45.0%
CCTATGTTCTTGCATTGCCT+TGG + chr5.1:72221578-72221597 None:intergenic 45.0%
CGCTCTGTAACCCAACATAA+TGG + chr5.1:72222694-72222713 None:intergenic 45.0%
CTACTTCCCCCTGTTAGTAT+TGG - chr5.1:72221622-72221641 MS.gene017058:CDS 45.0%
CTTGGGACTAATTGATTGGG+TGG - chr5.1:72222756-72222775 MS.gene017058:CDS 45.0%
GCAACTTGGATGAAATGTGG+GGG - chr5.1:72222097-72222116 MS.gene017058:CDS 45.0%
GGAATACTTGCACTTCATGG+AGG - chr5.1:72223020-72223039 MS.gene017058:CDS 45.0%
GGACACGGAAGAACATTTCT+TGG - chr5.1:72222738-72222757 MS.gene017058:CDS 45.0%
GGCAACTTGGATGAAATGTG+GGG - chr5.1:72222096-72222115 MS.gene017058:CDS 45.0%
GTCATAGAGTGAAGGATGGA+TGG + chr5.1:72222290-72222309 None:intergenic 45.0%
TAGAGTGAAGGATGGATGGA+AGG + chr5.1:72222286-72222305 None:intergenic 45.0%
TGCCAATGCCTAGTCCTAAA+AGG - chr5.1:72222962-72222981 MS.gene017058:CDS 45.0%
TGGAACAAGCTTCCCTTCAA+TGG + chr5.1:72221887-72221906 None:intergenic 45.0%
TGGCATGCAACTTTGACCAT+CGG - chr5.1:72222128-72222147 MS.gene017058:CDS 45.0%
TTCCCTTCAATGGTTTCCTC+TGG + chr5.1:72221877-72221896 None:intergenic 45.0%
! CCCCACAATAGTGTTATTGG+TGG + chr5.1:72221689-72221708 None:intergenic 45.0%
! GCGAGTTCATGATTTTCTGG+AGG - chr5.1:72222711-72222730 MS.gene017058:CDS 45.0%
!! AGACTTGTTATTGCTCGAGC+GGG + chr5.1:72222206-72222225 None:intergenic 45.0%
!! TCATGATTTTCTGGAGGCTG+CGG - chr5.1:72222717-72222736 MS.gene017058:CDS 45.0%
!! TGTGTTGGCTAGTAACTGCA+TGG + chr5.1:72222428-72222447 None:intergenic 45.0%
AAGTAGCTCAGGTTCACCCA+TGG + chr5.1:72221782-72221801 None:intergenic 50.0%
ACTTTGCAACAACCGTGGTG+TGG - chr5.1:72221798-72221817 MS.gene017058:CDS 50.0%
AGCAGATGGACCGACATTTG+TGG - chr5.1:72222834-72222853 MS.gene017058:CDS 50.0%
AGTGAAGGATGGATGGAAGG+TGG + chr5.1:72222283-72222302 None:intergenic 50.0%
CAATAAATCCTTGCCAGCCC+TGG + chr5.1:72222799-72222818 None:intergenic 50.0%
CCGACATTTGTGGTGTCTTC+CGG - chr5.1:72222844-72222863 MS.gene017058:CDS 50.0%
CCGGAAGACACCACAAATGT+CGG + chr5.1:72222847-72222866 None:intergenic 50.0%
CGGTTGTTGCAAAGTAGCTC+AGG + chr5.1:72221793-72221812 None:intergenic 50.0%
GTGAAGGATGGATGGAAGGT+GGG + chr5.1:72222282-72222301 None:intergenic 50.0%
TCAGCCGCTTCAACCAATAG+TGG - chr5.1:72222517-72222536 MS.gene017058:intron 50.0%
TGGGTGTCTTGGGGTCAAAA+GGG + chr5.1:72222263-72222282 None:intergenic 50.0%
! ATTCCTTGTGGTGGTGATGC+TGG - chr5.1:72222931-72222950 MS.gene017058:CDS 50.0%
! GAAATGTGGGGGGTTAGTAG+TGG - chr5.1:72222108-72222127 MS.gene017058:CDS 50.0%
! GAGCTACTTTGCAACAACCG+TGG - chr5.1:72221793-72221812 MS.gene017058:CDS 50.0%
! GGGCTGGCAAGGATTTATTG+CGG - chr5.1:72222799-72222818 MS.gene017058:CDS 50.0%
!! ACATGGTGTGCTTGCTGTTC+AGG - chr5.1:72221915-72221934 MS.gene017058:CDS 50.0%
AATAGGCGTCCGCTATCCGA+TGG + chr5.1:72222147-72222166 None:intergenic 55.0%
AGCTGCAACTACCTCCTCGT+TGG + chr5.1:72221554-72221573 None:intergenic 55.0%
GATGGAAGGTGGGTGTCTTG+GGG + chr5.1:72222272-72222291 None:intergenic 55.0%
GGAGGTAGTTGCAGCTACCA+AGG - chr5.1:72221558-72221577 MS.gene017058:CDS 55.0%
GGATGGAAGGTGGGTGTCTT+GGG + chr5.1:72222273-72222292 None:intergenic 55.0%
GTGGGTGTCTTGGGGTCAAA+AGG + chr5.1:72222264-72222283 None:intergenic 55.0%
TAGCCAGCATCACCACCACA+AGG + chr5.1:72222937-72222956 None:intergenic 55.0%
TCTGAATCGGGCTTGGGTTC+AGG + chr5.1:72222346-72222365 None:intergenic 55.0%
TGGAGGAGGTAGATCCGAGA+TGG + chr5.1:72222323-72222342 None:intergenic 55.0%
TGGATGGAAGGTGGGTGTCT+TGG + chr5.1:72222274-72222293 None:intergenic 55.0%
!! AAGAGCATCGACCGGTTCCA+GGG - chr5.1:72222779-72222798 MS.gene017058:CDS 55.0%
!! TTGGGTGGAAGAGCATCGAC+CGG - chr5.1:72222771-72222790 MS.gene017058:CDS 55.0%
!! TTTTCTGGAGGCTGCGGACA+CGG - chr5.1:72222723-72222742 MS.gene017058:CDS 55.0%
ATCCTTGCCAGCCCTGGAAC+CGG + chr5.1:72222793-72222812 None:intergenic 60.0%
GAATCGGGCTTGGGTTCAGG+TGG + chr5.1:72222343-72222362 None:intergenic 60.0%
GGAGTTCCTGGTGGAGCAGA+TGG - chr5.1:72222820-72222839 MS.gene017058:CDS 60.0%
!! GAAGAGCATCGACCGGTTCC+AGG - chr5.1:72222778-72222797 MS.gene017058:CDS 60.0%
GGATGGGGGAGACCCGTAGT+TGG - chr5.1:72222898-72222917 MS.gene017058:CDS 65.0%
GGCTTGGGTTCAGGTGGAGG+AGG + chr5.1:72222337-72222356 None:intergenic 65.0%
GTCGGTCCATCTGCTCCACC+AGG + chr5.1:72222829-72222848 None:intergenic 65.0%
TCGGGCTTGGGTTCAGGTGG+AGG + chr5.1:72222340-72222359 None:intergenic 65.0%
! GACCGGTTCCAGGGCTGGCA+AGG - chr5.1:72222788-72222807 MS.gene017058:CDS 70.0%
! GCATCGACCGGTTCCAGGGC+TGG - chr5.1:72222783-72222802 MS.gene017058:CDS 70.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 72221514 72223095 72221514 ID=MS.gene017058
chr5.1 mRNA 72221514 72223095 72221514 ID=MS.gene017058.t1;Parent=MS.gene017058
chr5.1 exon 72222673 72223095 72222673 ID=MS.gene017058.t1.exon1;Parent=MS.gene017058.t1
chr5.1 CDS 72222673 72223095 72222673 ID=cds.MS.gene017058.t1;Parent=MS.gene017058.t1
chr5.1 exon 72221514 72222512 72221514 ID=MS.gene017058.t1.exon2;Parent=MS.gene017058.t1
chr5.1 CDS 72221514 72222512 72221514 ID=cds.MS.gene017058.t1;Parent=MS.gene017058.t1
Gene Sequence

>MS.gene017058

ATGAGTATTGGAAAAGTAGAATTCAGTGTGAATATTACCAACGAGGAGGTAGTTGCAGCTACCAAGGCAATGCAAGAACATAGGCTAGCACTATCAAATCTTGATTTACTACTTCCCCCTGTTAGTATTGGTGTGTTCTTTTGCTACATGAATCCTATGATTACTATTGGCACCACCAATAACACTATTGTGGGGTGTTTGAAAAACTCCTTAGCTGAGGCTCTTGTTTCTTATTACGTCTTTGCTGGTGAAATGGTCACTAACTCCATGGGTGAACCTGAGCTACTTTGCAACAACCGTGGTGTGGATTTTGTTGAAGCTGTTGTTGATGTTGAGTTACAATCTCTCAATTTGCATAAGCCAGAGGAAACCATTGAAGGGAAGCTTGTTCCAAAGAAAACACATGGTGTGCTTGCTGTTCAGGTGAAAGTTTTTAATATTTGTTCATATTTACAAAAACATTTTGATCTCAAGGGTGTATTAGAATAGTGAAAGAATTATTATCATTATGCAGGTTTTTAGTTAATGATTAGTAGTAAGAAGCGTAGTAAGAAGTGTTTCAATTGTATGTATAATTGTGCAGGCAACTTGGATGAAATGTGGGGGGTTAGTAGTGGCATGCAACTTTGACCATCGGATAGCGGACGCCTATTCTACAAACATGTTTCTTGTATCATGGGCTGAGATAGCCCGCTCGAGCAATAACAAGTCTTTGATCTCAACAACACAACCTTGTTTTCAGAGGTCCCTTTTGACCCCAAGACACCCACCTTCCATCCATCCTTCACTCTATGACATGTACATCTCCATCTCGGATCTACCTCCTCCACCTGAACCCAAGCCCGATTCAGATATTAAAACAAACCCGCTAATAAGTCGCATGTACTACGTAACAAGCGAAGAACTCAACACCATGCAGTTACTAGCCAACACAAAAAATAGTGGAAGCATTAAGCGCTCAAAACTTGAATCATTTTCTGCTTTCTTGTGGAAGATGGTTGCATCAGCCGCTTCAACCAATAGTGGAAATGTTGTTGCAAAAATGGGGATTGTGGTCGACGGAAGAATGAGATTAAGCAATGGTGACAAAAACAAAGAAGAGTTTATGAGTTCGTATTTTGGGAATGTGCTTTCAACTCCCTACAGTTGTAAATTAATAGAAGAACTTGTTGACAAGCCATTATGTTGGGTTACAGAGCGAGTTCATGATTTTCTGGAGGCTGCGGACACGGAAGAACATTTCTTGGGACTAATTGATTGGGTGGAAGAGCATCGACCGGTTCCAGGGCTGGCAAGGATTTATTGCGGAGTTCCTGGTGGAGCAGATGGACCGACATTTGTGGTGTCTTCCGGACAAAGATTTCCAGAGTCAAAGGTAGATTTTGGATGGGGGAGACCCGTAGTTGGATCTTATCATATTCCTTGTGGTGGTGATGCTGGCTATGTTATGCCAATGCCTAGTCCTAAAAGGAATGGTGATTGGTTGATCTACATGAATCTTCCTAAGGAATACTTGCACTTCATGGAGGCTCAAGCTCCCCATTTCTTTAGACCAATCTCATGGGATTACCTTCTCAATTAA

Protein sequence

>MS.gene017058.t1

MSIGKVEFSVNITNEEVVAATKAMQEHRLALSNLDLLLPPVSIGVFFCYMNPMITIGTTNNTIVGCLKNSLAEALVSYYVFAGEMVTNSMGEPELLCNNRGVDFVEAVVDVELQSLNLHKPEETIEGKLVPKKTHGVLAVQATWMKCGGLVVACNFDHRIADAYSTNMFLVSWAEIARSSNNKSLISTTQPCFQRSLLTPRHPPSIHPSLYDMYISISDLPPPPEPKPDSDIKTNPLISRMYYVTSEELNTMQLLANTKNSGSIKRSKLESFSAFLWKMVASAASTNSGNVVAKMGIVVDGRMRLSNGDKNKEEFMSSYFGNVLSTPYSCKLIEELVDKPLCWVTERVHDFLEAADTEEHFLGLIDWVEEHRPVPGLARIYCGVPGGADGPTFVVSSGQRFPESKVDFGWGRPVVGSYHIPCGGDAGYVMPMPSPKRNGDWLIYMNLPKEYLHFMEAQAPHFFRPISWDYLLN