Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73577.t1 | XP_013468003.1 | 98 | 101 | 2 | 0 | 1 | 101 | 1 | 101 | 2.40E-51 | 211.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73577.t1 | Q9XH42 | 71.6 | 102 | 28 | 1 | 1 | 101 | 1 | 102 | 1.3e-40 | 166.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73577.t1 | A0A072VVB0 | 98.0 | 101 | 2 | 0 | 1 | 101 | 1 | 101 | 1.8e-51 | 211.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049350 | MS.gene73577 | 0.816037 | 6.80E-52 | -1.69E-46 |
| MS.gene049711 | MS.gene73577 | 0.813585 | 2.38E-51 | -1.69E-46 |
| MS.gene049807 | MS.gene73577 | 0.804591 | 2.01E-49 | -1.69E-46 |
| MS.gene050901 | MS.gene73577 | 0.817448 | 3.28E-52 | -1.69E-46 |
| MS.gene051201 | MS.gene73577 | 0.824402 | 8.23E-54 | -1.69E-46 |
| MS.gene051648 | MS.gene73577 | 0.820028 | 8.52E-53 | -1.69E-46 |
| MS.gene051664 | MS.gene73577 | 0.827302 | 1.69E-54 | -1.69E-46 |
| MS.gene051719 | MS.gene73577 | 0.860272 | 2.32E-63 | -1.69E-46 |
| MS.gene051720 | MS.gene73577 | 0.868117 | 8.28E-66 | -1.69E-46 |
| MS.gene052000 | MS.gene73577 | 0.816759 | 4.69E-52 | -1.69E-46 |
| MS.gene052516 | MS.gene73577 | 0.810281 | 1.25E-50 | -1.69E-46 |
| MS.gene053144 | MS.gene73577 | 0.826138 | 3.20E-54 | -1.69E-46 |
| MS.gene053536 | MS.gene73577 | 0.8123 | 4.54E-51 | -1.69E-46 |
| MS.gene053538 | MS.gene73577 | 0.807309 | 5.38E-50 | -1.69E-46 |
| MS.gene053581 | MS.gene73577 | 0.838242 | 3.23E-57 | -1.69E-46 |
| MS.gene053599 | MS.gene73577 | 0.810348 | 1.21E-50 | -1.69E-46 |
| MS.gene054584 | MS.gene73577 | 0.818953 | 1.50E-52 | -1.69E-46 |
| MS.gene054791 | MS.gene73577 | 0.817992 | 2.47E-52 | -1.69E-46 |
| MS.gene055144 | MS.gene73577 | 0.800401 | 1.47E-48 | -1.69E-46 |
| MS.gene055465 | MS.gene73577 | 0.840074 | 1.08E-57 | -1.69E-46 |
| MS.gene055466 | MS.gene73577 | 0.820426 | 6.90E-53 | -1.69E-46 |
| MS.gene055468 | MS.gene73577 | 0.81121 | 7.85E-51 | -1.69E-46 |
| MS.gene055537 | MS.gene73577 | 0.84324 | 1.58E-58 | -1.69E-46 |
| MS.gene056005 | MS.gene73577 | 0.838981 | 2.08E-57 | -1.69E-46 |
| MS.gene056082 | MS.gene73577 | 0.812133 | 4.94E-51 | -1.69E-46 |
| MS.gene056308 | MS.gene73577 | 0.823366 | 1.44E-53 | -1.69E-46 |
| MS.gene058087 | MS.gene73577 | 0.812535 | 4.04E-51 | -1.69E-46 |
| MS.gene05894 | MS.gene73577 | 0.82198 | 3.03E-53 | -1.69E-46 |
| MS.gene059424 | MS.gene73577 | 0.805743 | 1.15E-49 | -1.69E-46 |
| MS.gene060519 | MS.gene73577 | 0.878218 | 3.35E-69 | -1.69E-46 |
| MS.gene060587 | MS.gene73577 | 0.810132 | 1.34E-50 | -1.69E-46 |
| MS.gene060701 | MS.gene73577 | 0.827995 | 1.15E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73577.t1 | MTR_1g060190 | 98.020 | 101 | 2 | 0 | 1 | 101 | 1 | 101 | 4.11e-69 | 204 |
| MS.gene73577.t1 | MTR_2g086270 | 75.758 | 99 | 24 | 0 | 3 | 101 | 2 | 100 | 1.32e-53 | 165 |
| MS.gene73577.t1 | MTR_7g104460 | 67.327 | 101 | 33 | 0 | 1 | 101 | 1 | 101 | 2.16e-50 | 157 |
| MS.gene73577.t1 | MTR_0020s0120 | 63.158 | 95 | 35 | 0 | 7 | 101 | 6 | 100 | 9.80e-44 | 140 |
| MS.gene73577.t1 | MTR_0020s0120 | 62.222 | 90 | 34 | 0 | 7 | 96 | 6 | 95 | 6.81e-41 | 132 |
| MS.gene73577.t1 | MTR_7g084970 | 54.455 | 101 | 46 | 0 | 1 | 101 | 1 | 101 | 1.10e-37 | 125 |
| MS.gene73577.t1 | MTR_6g033040 | 50.495 | 101 | 50 | 0 | 1 | 101 | 1 | 101 | 3.41e-34 | 115 |
| MS.gene73577.t1 | MTR_7g006690 | 52.041 | 98 | 46 | 1 | 5 | 101 | 5 | 102 | 4.13e-34 | 115 |
| MS.gene73577.t1 | MTR_7g006630 | 54.167 | 96 | 43 | 1 | 7 | 101 | 2 | 97 | 5.24e-33 | 112 |
| MS.gene73577.t1 | MTR_7g085040 | 50.000 | 88 | 44 | 0 | 14 | 101 | 11 | 98 | 1.56e-30 | 106 |
| MS.gene73577.t1 | MTR_7g085020 | 51.579 | 95 | 46 | 0 | 7 | 101 | 8 | 102 | 1.17e-29 | 104 |
| MS.gene73577.t1 | MTR_8g106840 | 46.939 | 98 | 51 | 1 | 1 | 98 | 1 | 97 | 1.39e-26 | 96.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73577.t1 | AT5G03840 | 71.287 | 101 | 29 | 0 | 1 | 101 | 4 | 104 | 1.02e-52 | 163 |
| MS.gene73577.t1 | AT2G27550 | 67.647 | 102 | 32 | 1 | 1 | 101 | 1 | 102 | 2.87e-47 | 149 |
| MS.gene73577.t1 | AT5G62040 | 62.500 | 96 | 35 | 1 | 7 | 101 | 6 | 101 | 5.14e-42 | 135 |
| MS.gene73577.t1 | AT1G65480 | 57.895 | 95 | 40 | 0 | 7 | 101 | 7 | 101 | 1.17e-38 | 127 |
| MS.gene73577.t1 | AT1G65480 | 57.895 | 95 | 40 | 0 | 7 | 101 | 51 | 145 | 1.85e-38 | 128 |
| MS.gene73577.t1 | AT4G20370 | 54.737 | 95 | 43 | 0 | 7 | 101 | 7 | 101 | 2.83e-35 | 119 |
| MS.gene73577.t1 | AT1G18100 | 48.980 | 98 | 49 | 1 | 3 | 100 | 2 | 98 | 8.88e-28 | 99.8 |
Find 32 sgRNAs with CRISPR-Local
Find 390 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAAATGTTCTTTCATATA+AGG | 0.264953 | 1.4:+49338150 | None:intergenic |
| ACTTCAGATCCACTAATTCT+TGG | 0.327033 | 1.4:-49338605 | MS.gene73577:CDS |
| ATGATAGACCCGGATGTTCC+TGG | 0.362611 | 1.4:-49338183 | MS.gene73577:CDS |
| CTAATTCTTGGGAGAGTGAT+AGG | 0.367036 | 1.4:-49338593 | MS.gene73577:CDS |
| ATCACTCTCCCAAGAATTAG+TGG | 0.393204 | 1.4:+49338596 | None:intergenic |
| GGAACAACAGATTCCACATT+TGG | 0.406979 | 1.4:-49332142 | None:intergenic |
| CTTCAGATCCACTAATTCTT+GGG | 0.427576 | 1.4:-49338604 | MS.gene73577:CDS |
| TCACTTGGGCCAGGAACATC+CGG | 0.429086 | 1.4:+49338174 | None:intergenic |
| TCCAATCTCAATCCTTGGCT+TGG | 0.437325 | 1.4:+49338469 | None:intergenic |
| AATGTGGAATCTGTTGTTCC+TGG | 0.441986 | 1.4:+49332145 | None:intergenic |
| TCTCCTCCAATCTCAATCCT+TGG | 0.456612 | 1.4:+49338464 | None:intergenic |
| AATCTCAATCCTTGGCTTGG+TGG | 0.460499 | 1.4:+49338472 | None:intergenic |
| ACCAAGCCAAGGATTGAGAT+TGG | 0.488676 | 1.4:-49338470 | MS.gene73577:CDS |
| AACAACAAAGAAATCTTCAA+TGG | 0.490702 | 1.4:-49338521 | MS.gene73577:CDS |
| AGGATGGTGACAGACATTCC+AGG | 0.505982 | 1.4:-49332163 | MS.gene73577:CDS |
| GGCTTGGTGGTAACTGAAGA+AGG | 0.508899 | 1.4:+49338485 | None:intergenic |
| ATATAAGGATCACTTGGGCC+AGG | 0.520355 | 1.4:+49338165 | None:intergenic |
| TCTTTCATATAAGGATCACT+TGG | 0.526849 | 1.4:+49338159 | None:intergenic |
| AATATAATACCAGTGTAAAG+AGG | 0.529031 | 1.4:+49338429 | None:intergenic |
| ATCCATAAACCTACCAAATG+TGG | 0.542587 | 1.4:+49332129 | None:intergenic |
| ATATGAAAGAACATTTGCAC+TGG | 0.561788 | 1.4:-49338146 | MS.gene73577:intron |
| ATATAATACCAGTGTAAAGA+GGG | 0.562460 | 1.4:+49338430 | None:intergenic |
| AAGGATTGAGATTGGAGGAG+AGG | 0.578470 | 1.4:-49338462 | MS.gene73577:CDS |
| CTTTCATATAAGGATCACTT+GGG | 0.579211 | 1.4:+49338160 | None:intergenic |
| GGTGGTAACTGAAGAAGGAA+AGG | 0.582057 | 1.4:+49338490 | None:intergenic |
| AAGCCAAGGATTGAGATTGG+AGG | 0.587134 | 1.4:-49338467 | MS.gene73577:CDS |
| GTGGTAACTGAAGAAGGAAA+GGG | 0.591441 | 1.4:+49338491 | None:intergenic |
| CTTCAGTTACCACCAAGCCA+AGG | 0.603242 | 1.4:-49338481 | MS.gene73577:CDS |
| CACTTGGGCCAGGAACATCC+GGG | 0.604987 | 1.4:+49338175 | None:intergenic |
| TCTGCAGGTCATGATAGACC+CGG | 0.613879 | 1.4:-49338193 | MS.gene73577:intron |
| AGATTGGAGGAGAGGACATG+AGG | 0.621266 | 1.4:-49338454 | MS.gene73577:CDS |
| CATGAGGTCCCTCTTTACAC+TGG | 0.660776 | 1.4:-49338438 | MS.gene73577:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAAAATTTAATATT+TGG | - | chr1.4:49335801-49335820 | MS.gene73577:intron | 0.0% |
| !!! | AAATTTAATTTTTTTATAAT+AGG | + | chr1.4:49335159-49335178 | None:intergenic | 0.0% |
| !! | ATAAATATATTAAAATAGGT+TGG | + | chr1.4:49333700-49333719 | None:intergenic | 10.0% |
| !! | ATATTTGCATATTAAAAAAA+TGG | + | chr1.4:49335388-49335407 | None:intergenic | 10.0% |
| !! | GAATAAATAATATTAAAGAT+AGG | + | chr1.4:49338096-49338115 | None:intergenic | 10.0% |
| !!! | AAAAAAGTTATATTTTTCAA+TGG | - | chr1.4:49332522-49332541 | MS.gene73577:intron | 10.0% |
| !!! | AGATAATATTTTTACAAATA+AGG | - | chr1.4:49336796-49336815 | MS.gene73577:intron | 10.0% |
| !!! | ATAAATTCTTTTTTTTTTCA+TGG | - | chr1.4:49332364-49332383 | MS.gene73577:intron | 10.0% |
| !!! | CTTATTGTTTTATTATAATA+GGG | + | chr1.4:49338308-49338327 | None:intergenic | 10.0% |
| !!! | GAAAAATATAACTTTTTTTT+AGG | + | chr1.4:49332520-49332539 | None:intergenic | 10.0% |
| !!! | TAAATTCTTTTTTTTTTCAT+GGG | - | chr1.4:49332365-49332384 | MS.gene73577:intron | 10.0% |
| !!! | TAATTATAGAAATGTATTTT+CGG | - | chr1.4:49332410-49332429 | MS.gene73577:intron | 10.0% |
| !!! | TATAAATTTTTAAGTTTATG+AGG | + | chr1.4:49336610-49336629 | None:intergenic | 10.0% |
| !!! | TCTTATTGTTTTATTATAAT+AGG | + | chr1.4:49338309-49338328 | None:intergenic | 10.0% |
| !!! | TTTTATTATAAAACATTGTA+AGG | + | chr1.4:49336086-49336105 | None:intergenic | 10.0% |
| !! | AAACAAATTAAAAGTGATTA+TGG | - | chr1.4:49332762-49332781 | MS.gene73577:intron | 15.0% |
| !! | AAACACATAAATAAAATAGT+TGG | + | chr1.4:49332871-49332890 | None:intergenic | 15.0% |
| !! | AAAGTAGAATATATTGTATT+GGG | + | chr1.4:49334656-49334675 | None:intergenic | 15.0% |
| !! | AATATGAAATATGAATGAAA+AGG | + | chr1.4:49336761-49336780 | None:intergenic | 15.0% |
| !! | ATTGATCATATAAATCTTTA+TGG | + | chr1.4:49337278-49337297 | None:intergenic | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | + | chr1.4:49334615-49334634 | None:intergenic | 15.0% |
| !! | CTTAATAAAAACAATTCAAT+AGG | - | chr1.4:49338351-49338370 | MS.gene73577:intron | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | + | chr1.4:49334616-49334635 | None:intergenic | 15.0% |
| !!! | AAGAAAAGTGTATAAATAAA+GGG | + | chr1.4:49334680-49334699 | None:intergenic | 15.0% |
| !!! | ACTTTTTTATTAACCAAAAT+TGG | + | chr1.4:49338567-49338586 | None:intergenic | 15.0% |
| !!! | ATAAAAAAGTCATATTTTTC+AGG | - | chr1.4:49338577-49338596 | MS.gene73577:CDS | 15.0% |
| !!! | ATAAAGTAAACTTTAAAAAG+CGG | + | chr1.4:49333648-49333667 | None:intergenic | 15.0% |
| !!! | ATTAACAATATATCCAATTT+TGG | - | chr1.4:49338551-49338570 | MS.gene73577:CDS | 15.0% |
| !!! | ATTGGTCATATAAATTTTTA+TGG | + | chr1.4:49337236-49337255 | None:intergenic | 15.0% |
| !!! | TAAGAAAAGTGTATAAATAA+AGG | + | chr1.4:49334681-49334700 | None:intergenic | 15.0% |
| !!! | TACAATATAGTTTTTTTTGA+AGG | + | chr1.4:49338404-49338423 | None:intergenic | 15.0% |
| !!! | TCACTATATAATTAACATTT+TGG | - | chr1.4:49335087-49335106 | MS.gene73577:intron | 15.0% |
| !!! | TGATATAATTTTTATAATGC+AGG | + | chr1.4:49337007-49337026 | None:intergenic | 15.0% |
| !!! | TTATAATAGGGTTTTATTTT+AGG | + | chr1.4:49338296-49338315 | None:intergenic | 15.0% |
| !!! | TTTTCTTATAATAAGAATCA+GGG | - | chr1.4:49337694-49337713 | MS.gene73577:intron | 15.0% |
| !!! | TTTTTCTTATAATAAGAATC+AGG | - | chr1.4:49337693-49337712 | MS.gene73577:intron | 15.0% |
| !!! | TTTTTTATAATAGGATCAAA+GGG | + | chr1.4:49335150-49335169 | None:intergenic | 15.0% |
| !!! | TTTTTTTATAATAGGATCAA+AGG | + | chr1.4:49335151-49335170 | None:intergenic | 15.0% |
| !! | AAAAAAACTATATTGTAGTC+TGG | - | chr1.4:49338407-49338426 | MS.gene73577:intron | 20.0% |
| !! | AAATAATATTAAAGATAGGG+TGG | + | chr1.4:49338092-49338111 | None:intergenic | 20.0% |
| !! | AATATATAAACGTTTAGAGA+AGG | - | chr1.4:49336119-49336138 | MS.gene73577:intron | 20.0% |
| !! | AATATATGCCAAAGAAATAA+TGG | - | chr1.4:49336720-49336739 | MS.gene73577:intron | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | + | chr1.4:49334583-49334602 | None:intergenic | 20.0% |
| !! | ATTACGTAATACTAATGAAT+TGG | - | chr1.4:49338507-49338526 | MS.gene73577:CDS | 20.0% |
| !! | CTGAGAAATTATTTATATCT+GGG | + | chr1.4:49337764-49337783 | None:intergenic | 20.0% |
| !! | CTTGTTAAAAAATCTACTTA+CGG | + | chr1.4:49337787-49337806 | None:intergenic | 20.0% |
| !! | GAAAGTAGAATATATTGTAT+TGG | + | chr1.4:49334657-49334676 | None:intergenic | 20.0% |
| !! | GTTGTATTGAAAATTGAAAT+GGG | + | chr1.4:49334582-49334601 | None:intergenic | 20.0% |
| !! | TAAACAGTTAACAGAAAAAT+TGG | + | chr1.4:49336538-49336557 | None:intergenic | 20.0% |
| !! | TAAACGTTTATATATTAACC+AGG | + | chr1.4:49336115-49336134 | None:intergenic | 20.0% |
| !! | TACATGATATTTGATATGTT+AGG | - | chr1.4:49334116-49334135 | MS.gene73577:intron | 20.0% |
| !! | TTCAAAAAAACAAGAAATAG+AGG | - | chr1.4:49334926-49334945 | MS.gene73577:intron | 20.0% |
| !! | TTTATAATAAAACATCAACC+TGG | - | chr1.4:49336094-49336113 | MS.gene73577:intron | 20.0% |
| !!! | AATAGAATTTTGATGACAAT+AGG | + | chr1.4:49336684-49336703 | None:intergenic | 20.0% |
| !!! | ACAGTGTCTTTTTAATTAAA+AGG | - | chr1.4:49333509-49333528 | MS.gene73577:intron | 20.0% |
| !!! | ACTTCTAAGAACTTTATTAT+TGG | + | chr1.4:49337739-49337758 | None:intergenic | 20.0% |
| !!! | AGAAAAGTGTATAAATAAAG+GGG | + | chr1.4:49334679-49334698 | None:intergenic | 20.0% |
| !!! | CAAGTTTTCATAAAAATGTT+TGG | + | chr1.4:49334973-49334992 | None:intergenic | 20.0% |
| !!! | CATATGAATTAGTAATGTTT+TGG | + | chr1.4:49337390-49337409 | None:intergenic | 20.0% |
| !!! | CTTGATATCTTTTTAATGTT+TGG | + | chr1.4:49336834-49336853 | None:intergenic | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | + | chr1.4:49334546-49334565 | None:intergenic | 20.0% |
| !!! | GTTATTATTTTGCTTGATTA+AGG | - | chr1.4:49332724-49332743 | MS.gene73577:intron | 20.0% |
| !!! | TAAAGTAAACTTTAAAAAGC+GGG | + | chr1.4:49333647-49333666 | None:intergenic | 20.0% |
| !!! | TAACCTATGAATTTTCTTTA+TGG | - | chr1.4:49337085-49337104 | MS.gene73577:intron | 20.0% |
| !!! | TACTTTTAACTAGAGTAAAT+AGG | - | chr1.4:49336405-49336424 | MS.gene73577:intron | 20.0% |
| !!! | TAGCTTTTTCCAAATTTTAA+TGG | - | chr1.4:49336369-49336388 | MS.gene73577:intron | 20.0% |
| !!! | TATAAAAAATAGAGTTTTCG+CGG | - | chr1.4:49333874-49333893 | MS.gene73577:intron | 20.0% |
| !!! | TCTATTTCTTGTTTTTTTGA+AGG | + | chr1.4:49334927-49334946 | None:intergenic | 20.0% |
| !!! | TTAGAAAATGTTTCTCTTTT+AGG | - | chr1.4:49338031-49338050 | MS.gene73577:intron | 20.0% |
| !!! | TTTTACCTCTAATATAGTTT+GGG | - | chr1.4:49333958-49333977 | MS.gene73577:intron | 20.0% |
| !!! | TTTTTACCTCTAATATAGTT+TGG | - | chr1.4:49333957-49333976 | MS.gene73577:intron | 20.0% |
| !!! | TTTTTGAAATTTTTCCGTAT+CGG | + | chr1.4:49335296-49335315 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGCTATGAAAAAA+TGG | - | chr1.4:49333827-49333846 | MS.gene73577:intron | 20.0% |
| ! | AAACAGTCAAATATGTTAGA+GGG | + | chr1.4:49333359-49333378 | None:intergenic | 25.0% |
| ! | AAACCCTAATTTCTTAGAAA+GGG | - | chr1.4:49335582-49335601 | MS.gene73577:intron | 25.0% |
| ! | AAACTTGATGTTGCAATTTA+TGG | - | chr1.4:49334986-49335005 | MS.gene73577:intron | 25.0% |
| ! | AACAACAAAGAAATCTTCAA+TGG | - | chr1.4:49332239-49332258 | MS.gene73577:intron | 25.0% |
| ! | AACTTTGTGGATTCAAAAAT+TGG | + | chr1.4:49334295-49334314 | None:intergenic | 25.0% |
| ! | AATATAATACCAGTGTAAAG+AGG | + | chr1.4:49332334-49332353 | None:intergenic | 25.0% |
| ! | AATGAGGGTTATGTAATAAA+TGG | + | chr1.4:49332954-49332973 | None:intergenic | 25.0% |
| ! | ACATTACCTTTATCTTTCTT+TGG | + | chr1.4:49335652-49335671 | None:intergenic | 25.0% |
| ! | AGCAACTCTCTTAAAATTTA+CGG | + | chr1.4:49335986-49336005 | None:intergenic | 25.0% |
| ! | ATATAATACCAGTGTAAAGA+GGG | + | chr1.4:49332333-49332352 | None:intergenic | 25.0% |
| ! | ATGTATGTTTATGTAGCTAT+TGG | + | chr1.4:49337254-49337273 | None:intergenic | 25.0% |
| ! | ATTAACAAACACAAGAAACT+AGG | - | chr1.4:49335408-49335427 | MS.gene73577:intron | 25.0% |
| ! | ATTAACGTTATGCAATTTCA+GGG | + | chr1.4:49336499-49336518 | None:intergenic | 25.0% |
| ! | CAATAGTTATCTTCATTTCT+TGG | - | chr1.4:49337875-49337894 | MS.gene73577:intron | 25.0% |
| ! | CATTAAATTTGGGTCATTAA+TGG | - | chr1.4:49333234-49333253 | MS.gene73577:intron | 25.0% |
| ! | CATTAATGACCCAAATTTAA+TGG | + | chr1.4:49333236-49333255 | None:intergenic | 25.0% |
| ! | GATAATATATATCAGATGAG+AGG | - | chr1.4:49335203-49335222 | MS.gene73577:intron | 25.0% |
| ! | GCTGAGAAATTATTTATATC+TGG | + | chr1.4:49337765-49337784 | None:intergenic | 25.0% |
| ! | TAAACAGTCAAATATGTTAG+AGG | + | chr1.4:49333360-49333379 | None:intergenic | 25.0% |
| ! | TAAAGCTATATATACCAACT+AGG | + | chr1.4:49332699-49332718 | None:intergenic | 25.0% |
| ! | TATCTATCACATAACTTTGT+AGG | - | chr1.4:49336901-49336920 | MS.gene73577:intron | 25.0% |
| ! | TATTTGATATGTTAGGACTT+AGG | - | chr1.4:49334123-49334142 | MS.gene73577:intron | 25.0% |
| ! | TCAAAAATCAAGATACGATA+CGG | - | chr1.4:49335309-49335328 | MS.gene73577:intron | 25.0% |
| ! | TGCAAATGTTCTTTCATATA+AGG | + | chr1.4:49332613-49332632 | None:intergenic | 25.0% |
| ! | TGTAGTTAAAAGGAGTAAAT+AGG | + | chr1.4:49337320-49337339 | None:intergenic | 25.0% |
| ! | TGTCCATAAAGAAAATTCAT+AGG | + | chr1.4:49337091-49337110 | None:intergenic | 25.0% |
| ! | TTTAATATTTGGATACTCTC+CGG | - | chr1.4:49335812-49335831 | MS.gene73577:intron | 25.0% |
| ! | TTTACCTCTAATATAGTTTG+GGG | - | chr1.4:49333959-49333978 | MS.gene73577:intron | 25.0% |
| !! | AATTTTTGAATCCACAAAGT+TGG | - | chr1.4:49334294-49334313 | MS.gene73577:intron | 25.0% |
| !! | AGAACTGAATGTATGATTTT+TGG | + | chr1.4:49336644-49336663 | None:intergenic | 25.0% |
| !! | ATAAAAAATAGAGTTTTCGC+GGG | - | chr1.4:49333875-49333894 | MS.gene73577:intron | 25.0% |
| !! | ATCGATTTAGATATTACTTG+TGG | + | chr1.4:49332800-49332819 | None:intergenic | 25.0% |
| !! | ATGTGGTATTCTCTTTTAAT+GGG | - | chr1.4:49336055-49336074 | MS.gene73577:intron | 25.0% |
| !! | CATCAAATGAATTGATGATA+TGG | - | chr1.4:49334403-49334422 | MS.gene73577:intron | 25.0% |
| !! | GAATTTAAGATAAACCTAGT+TGG | - | chr1.4:49332682-49332701 | MS.gene73577:intron | 25.0% |
| !! | GGCTTTTATGTTAAATAGAT+GGG | + | chr1.4:49338271-49338290 | None:intergenic | 25.0% |
| !! | TATGATTTGTACGAAAATGA+GGG | + | chr1.4:49332969-49332988 | None:intergenic | 25.0% |
| !! | TGACAAAACCATTATTTCTT+TGG | + | chr1.4:49336731-49336750 | None:intergenic | 25.0% |
| !! | TTTCCCTTTCTAAGAAATTA+GGG | + | chr1.4:49335588-49335607 | None:intergenic | 25.0% |
| !!! | AAAAGTCATATTTTTCAGGA+TGG | - | chr1.4:49338581-49338600 | MS.gene73577:CDS | 25.0% |
| !!! | AAGACTTTTTTTACACAAGT+TGG | + | chr1.4:49337166-49337185 | None:intergenic | 25.0% |
| !!! | AATAGGGTTTTATTTTAGGT+GGG | + | chr1.4:49338292-49338311 | None:intergenic | 25.0% |
| !!! | ACTCTAGTTAAAAGTATCAA+GGG | + | chr1.4:49336401-49336420 | None:intergenic | 25.0% |
| !!! | ATAAGTTACAGTCATTTTTG+TGG | + | chr1.4:49332219-49332238 | None:intergenic | 25.0% |
| !!! | ATACTACTTGCTTTTCTAAA+AGG | + | chr1.4:49333092-49333111 | None:intergenic | 25.0% |
| !!! | ATATCAATTTTTTGCTGCTA+TGG | + | chr1.4:49336884-49336903 | None:intergenic | 25.0% |
| !!! | ATTTTAAGAGAGTTGCTATA+CGG | - | chr1.4:49335989-49336008 | MS.gene73577:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | + | chr1.4:49334547-49334566 | None:intergenic | 25.0% |
| !!! | GTGTGTTTTTATATGTTTAG+AGG | - | chr1.4:49335028-49335047 | MS.gene73577:intron | 25.0% |
| !!! | TAATAGGGTTTTATTTTAGG+TGG | + | chr1.4:49338293-49338312 | None:intergenic | 25.0% |
| !!! | TACTACTTGCTTTTCTAAAA+GGG | + | chr1.4:49333091-49333110 | None:intergenic | 25.0% |
| !!! | TACTCTAGTTAAAAGTATCA+AGG | + | chr1.4:49336402-49336421 | None:intergenic | 25.0% |
| !!! | TGAAGTTTTGTTAATTTCAG+CGG | + | chr1.4:49336469-49336488 | None:intergenic | 25.0% |
| AACAGTCAAATATGTTAGAG+GGG | + | chr1.4:49333358-49333377 | None:intergenic | 30.0% | |
| AATATTGACGATTAAGAGAG+TGG | - | chr1.4:49335459-49335478 | MS.gene73577:intron | 30.0% | |
| AATGTTGCAGCTAATAGATA+TGG | - | chr1.4:49336976-49336995 | MS.gene73577:intron | 30.0% | |
| ACAGTTAACAGAAAAATTGG+CGG | + | chr1.4:49336535-49336554 | None:intergenic | 30.0% | |
| ACATAAGTGCAAAAGTTCAA+GGG | + | chr1.4:49336579-49336598 | None:intergenic | 30.0% | |
| ACTTGTTCGTTGTAGTTAAA+AGG | + | chr1.4:49337330-49337349 | None:intergenic | 30.0% | |
| ATATGAAAGAACATTTGCAC+TGG | - | chr1.4:49332614-49332633 | MS.gene73577:intron | 30.0% | |
| ATGTTTACTTCATTGGAGTA+AGG | - | chr1.4:49335053-49335072 | MS.gene73577:intron | 30.0% | |
| ATTAACCCATATCACACAAA+AGG | + | chr1.4:49334471-49334490 | None:intergenic | 30.0% | |
| ATTAAGTTAGACTCCGTAAT+TGG | - | chr1.4:49332835-49332854 | MS.gene73577:intron | 30.0% | |
| CAAAGTAGGTCAATTATATC+GGG | - | chr1.4:49334716-49334735 | MS.gene73577:intron | 30.0% | |
| CCAAAGTAGGTCAATTATAT+CGG | - | chr1.4:49334715-49334734 | MS.gene73577:intron | 30.0% | |
| CCCTAAATAAAGAAGTTGTA+CGG | - | chr1.4:49338162-49338181 | MS.gene73577:CDS | 30.0% | |
| CTAGAACAATACCTTGAATA+TGG | - | chr1.4:49338474-49338493 | MS.gene73577:CDS | 30.0% | |
| CTTCGATCTTATTAAAGTCT+TGG | - | chr1.4:49337844-49337863 | MS.gene73577:intron | 30.0% | |
| CTTTCATATAAGGATCACTT+GGG | + | chr1.4:49332603-49332622 | None:intergenic | 30.0% | |
| GAAACCCTAATTTCTTAGAA+AGG | - | chr1.4:49335581-49335600 | MS.gene73577:intron | 30.0% | |
| GATCTATCAAACAGTAATAG+AGG | + | chr1.4:49338128-49338147 | None:intergenic | 30.0% | |
| GATTAACGTTATGCAATTTC+AGG | + | chr1.4:49336500-49336519 | None:intergenic | 30.0% | |
| GCAAAGTTCACTGTTAATAT+TGG | - | chr1.4:49337806-49337825 | MS.gene73577:intron | 30.0% | |
| GGGTTATGTAATAAATGGTA+CGG | + | chr1.4:49332949-49332968 | None:intergenic | 30.0% | |
| TCTTTCATATAAGGATCACT+TGG | + | chr1.4:49332604-49332623 | None:intergenic | 30.0% | |
| TGCATATTACACCATATTCA+AGG | + | chr1.4:49338488-49338507 | None:intergenic | 30.0% | |
| TTAACGTTATGCAATTTCAG+GGG | + | chr1.4:49336498-49336517 | None:intergenic | 30.0% | |
| TTAAGTTAGACTCCGTAATT+GGG | - | chr1.4:49332836-49332855 | MS.gene73577:intron | 30.0% | |
| TTTCTTAACATGTGTCCTAA+GGG | - | chr1.4:49338054-49338073 | MS.gene73577:intron | 30.0% | |
| ! | ACCGTACAACTTCTTTATTT+AGG | + | chr1.4:49338166-49338185 | None:intergenic | 30.0% |
| ! | CATGTGGTATTCTCTTTTAA+TGG | - | chr1.4:49336054-49336073 | MS.gene73577:intron | 30.0% |
| ! | CCGTACAACTTCTTTATTTA+GGG | + | chr1.4:49338165-49338184 | None:intergenic | 30.0% |
| ! | CTTTCCCTTTCTAAGAAATT+AGG | + | chr1.4:49335589-49335608 | None:intergenic | 30.0% |
| ! | GGGCTTTTATGTTAAATAGA+TGG | + | chr1.4:49338272-49338291 | None:intergenic | 30.0% |
| ! | GTATGATTTGTACGAAAATG+AGG | + | chr1.4:49332970-49332989 | None:intergenic | 30.0% |
| !! | AGATTTCTGGTTGTTATTCT+AGG | + | chr1.4:49334072-49334091 | None:intergenic | 30.0% |
| !! | CATATTCAAGGTATTGTTCT+AGG | + | chr1.4:49338476-49338495 | None:intergenic | 30.0% |
| !! | GGGTCAATCAAATTGTTTTA+TGG | + | chr1.4:49333149-49333168 | None:intergenic | 30.0% |
| !! | GGGTTTTGACCATTAAAATT+TGG | + | chr1.4:49336381-49336400 | None:intergenic | 30.0% |
| !! | TGTTATTCTAGGATGTTGTT+AGG | + | chr1.4:49334061-49334080 | None:intergenic | 30.0% |
| !! | TTAAAATAGGTTGGTGCTTA+TGG | + | chr1.4:49333691-49333710 | None:intergenic | 30.0% |
| !! | TTCAACTTTTTCTTCCAAAG+TGG | + | chr1.4:49335564-49335583 | None:intergenic | 30.0% |
| !!! | AAGTTTTGTTAATTTCAGCG+GGG | + | chr1.4:49336467-49336486 | None:intergenic | 30.0% |
| !!! | GAAGTTTTGTTAATTTCAGC+GGG | + | chr1.4:49336468-49336487 | None:intergenic | 30.0% |
| !!! | TGAATTAGTAATGTTTTGGC+AGG | + | chr1.4:49337386-49337405 | None:intergenic | 30.0% |
| !!! | TTACAGTCATTTTTGTGGTT+GGG | + | chr1.4:49332214-49332233 | None:intergenic | 30.0% |
| AAACACATTGTCATTGCATC+TGG | + | chr1.4:49333285-49333304 | None:intergenic | 35.0% | |
| AAACCAGTGAGCTAAAATCA+TGG | - | chr1.4:49334880-49334899 | MS.gene73577:intron | 35.0% | |
| AAACGTTTAGAGAAGGCAAA+CGG | - | chr1.4:49336126-49336145 | MS.gene73577:intron | 35.0% | |
| AAATTGAGAGACCAACTTTG+TGG | + | chr1.4:49334308-49334327 | None:intergenic | 35.0% | |
| AACACATTGTCATTGCATCT+GGG | + | chr1.4:49333284-49333303 | None:intergenic | 35.0% | |
| ACGACAACTTCAATTTCATG+TGG | - | chr1.4:49336038-49336057 | MS.gene73577:intron | 35.0% | |
| ACTTCAGATCCACTAATTCT+TGG | - | chr1.4:49332155-49332174 | MS.gene73577:CDS | 35.0% | |
| AGAAAATGGGTCAGTTATTC+CGG | + | chr1.4:49334533-49334552 | None:intergenic | 35.0% | |
| AGAGGTGATGTTTACTTCAT+TGG | - | chr1.4:49335046-49335065 | MS.gene73577:intron | 35.0% | |
| AGATGCTTATGTGACAACTA+AGG | + | chr1.4:49334793-49334812 | None:intergenic | 35.0% | |
| ATAAGTGCAAAAGTTCAAGG+GGG | + | chr1.4:49336577-49336596 | None:intergenic | 35.0% | |
| ATGTTGTAAGGCATATGAGT+CGG | + | chr1.4:49333560-49333579 | None:intergenic | 35.0% | |
| CACATAAGTGCAAAAGTTCA+AGG | + | chr1.4:49336580-49336599 | None:intergenic | 35.0% | |
| CATAAGTGCAAAAGTTCAAG+GGG | + | chr1.4:49336578-49336597 | None:intergenic | 35.0% | |
| CCGATATAATTGACCTACTT+TGG | + | chr1.4:49334718-49334737 | None:intergenic | 35.0% | |
| CTTCAGATCCACTAATTCTT+GGG | - | chr1.4:49332156-49332175 | MS.gene73577:CDS | 35.0% | |
| GAAAGCTATGCAGTAAATTC+TGG | + | chr1.4:49333449-49333468 | None:intergenic | 35.0% | |
| GAGATTGTCTCATAGCTAAA+TGG | - | chr1.4:49337548-49337567 | MS.gene73577:intron | 35.0% | |
| GTTTCTTAACATGTGTCCTA+AGG | - | chr1.4:49338053-49338072 | MS.gene73577:intron | 35.0% | |
| TACTGCATAGCTTTCAATCT+CGG | - | chr1.4:49333454-49333473 | MS.gene73577:intron | 35.0% | |
| TCATTGGAGTAAGGATAGAA+GGG | - | chr1.4:49335062-49335081 | MS.gene73577:intron | 35.0% | |
| TCTGTGTGAAAAACCAAAGT+AGG | - | chr1.4:49334702-49334721 | MS.gene73577:intron | 35.0% | |
| TGCGCAGAAATGAAAATTAG+AGG | + | chr1.4:49334163-49334182 | None:intergenic | 35.0% | |
| TGTAGCCACATACTCTTTAA+CGG | - | chr1.4:49333179-49333198 | MS.gene73577:intron | 35.0% | |
| TTAACAGAAAAATTGGCGGA+GGG | + | chr1.4:49336531-49336550 | None:intergenic | 35.0% | |
| TTCATTGGAGTAAGGATAGA+AGG | - | chr1.4:49335061-49335080 | MS.gene73577:intron | 35.0% | |
| TTGAAATGGGTCAGTTAGTT+TGG | + | chr1.4:49334569-49334588 | None:intergenic | 35.0% | |
| TTTGTGTGGCTCAGATTTAA+TGG | - | chr1.4:49333302-49333321 | MS.gene73577:intron | 35.0% | |
| ! | ACAGTTCCTTTTGTGTGATA+TGG | - | chr1.4:49334462-49334481 | MS.gene73577:intron | 35.0% |
| ! | CAGTTCCTTTTGTGTGATAT+GGG | - | chr1.4:49334463-49334482 | MS.gene73577:intron | 35.0% |
| ! | CCTTTATCTTTCTTTGGTGT+CGG | + | chr1.4:49335646-49335665 | None:intergenic | 35.0% |
| ! | TAAACTTTAAAAAGCGGGTG+CGG | + | chr1.4:49333642-49333661 | None:intergenic | 35.0% |
| ! | TGAAATGGGTCAGTTAGTTT+GGG | + | chr1.4:49334568-49334587 | None:intergenic | 35.0% |
| !!! | AATCCATGATTTTAGCTCAC+TGG | + | chr1.4:49334886-49334905 | None:intergenic | 35.0% |
| !!! | CGTCATCCATTTTGAAGTAT+CGG | - | chr1.4:49335892-49335911 | MS.gene73577:intron | 35.0% |
| !!! | GTCATCCATTTTGAAGTATC+GGG | - | chr1.4:49335893-49335912 | MS.gene73577:intron | 35.0% |
| !!! | GTTACAGTCATTTTTGTGGT+TGG | + | chr1.4:49332215-49332234 | None:intergenic | 35.0% |
| !!! | TACAGTCATTTTTGTGGTTG+GGG | + | chr1.4:49332213-49332232 | None:intergenic | 35.0% |
| !!! | TCATCCATTTTGAAGTATCG+GGG | - | chr1.4:49335894-49335913 | MS.gene73577:intron | 35.0% |
| AAATCAAGATACGATACGGC+TGG | - | chr1.4:49335313-49335332 | MS.gene73577:intron | 40.0% | |
| AAGTTAACACCACCCCTTTA+AGG | - | chr1.4:49337910-49337929 | MS.gene73577:intron | 40.0% | |
| AATCAAGATACGATACGGCT+GGG | - | chr1.4:49335314-49335333 | MS.gene73577:intron | 40.0% | |
| AATGTGGAATCTGTTGTTCC+TGG | + | chr1.4:49338618-49338637 | None:intergenic | 40.0% | |
| ACACAAGTATCCGTGTGTAT+CGG | - | chr1.4:49335745-49335764 | MS.gene73577:intron | 40.0% | |
| AGGAAGAAGAAACAAGGCTT+AGG | + | chr1.4:49337054-49337073 | None:intergenic | 40.0% | |
| AGTTAACACCACCCCTTTAA+GGG | - | chr1.4:49337911-49337930 | MS.gene73577:intron | 40.0% | |
| ATCACTCTCCCAAGAATTAG+TGG | + | chr1.4:49332167-49332186 | None:intergenic | 40.0% | |
| CATACAACTCATTCGTGCAA+TGG | - | chr1.4:49336321-49336340 | MS.gene73577:intron | 40.0% | |
| CATAGGTTAATATCCGCAGA+AGG | + | chr1.4:49337074-49337093 | None:intergenic | 40.0% | |
| CCGACACCAAAGAAAGATAA+AGG | - | chr1.4:49335643-49335662 | MS.gene73577:intron | 40.0% | |
| CCTCTAATATAGTTTGGGGA+CGG | - | chr1.4:49333963-49333982 | MS.gene73577:intron | 40.0% | |
| CTAATTCTTGGGAGAGTGAT+AGG | - | chr1.4:49332167-49332186 | MS.gene73577:intron | 40.0% | |
| GAAAATGGGTCAGTTATTCC+GGG | + | chr1.4:49334532-49334551 | None:intergenic | 40.0% | |
| GAAAGATGCAATTGTCTGTG+TGG | - | chr1.4:49335604-49335623 | MS.gene73577:intron | 40.0% | |
| GACCAGATCGATCAATTTAG+AGG | + | chr1.4:49333009-49333028 | None:intergenic | 40.0% | |
| GCAATGACAATGTGTTTGTG+TGG | - | chr1.4:49333288-49333307 | MS.gene73577:intron | 40.0% | |
| GTAGCCACATACTCTTTAAC+GGG | - | chr1.4:49333180-49333199 | MS.gene73577:intron | 40.0% | |
| GTGGTAACTGAAGAAGGAAA+GGG | + | chr1.4:49332272-49332291 | None:intergenic | 40.0% | |
| GTTAACAGAAAAATTGGCGG+AGG | + | chr1.4:49336532-49336551 | None:intergenic | 40.0% | |
| TAACAGAAAAATTGGCGGAG+GGG | + | chr1.4:49336530-49336549 | None:intergenic | 40.0% | |
| TAATGGCACGTTGCCATTAA+TGG | - | chr1.4:49333319-49333338 | MS.gene73577:intron | 40.0% | |
| TGCCAAGTCTAGATGTTGTA+AGG | + | chr1.4:49333572-49333591 | None:intergenic | 40.0% | |
| TGCCTCTAAATTGATCGATC+TGG | - | chr1.4:49333004-49333023 | MS.gene73577:intron | 40.0% | |
| TGCCTTACAACATCTAGACT+TGG | - | chr1.4:49333567-49333586 | MS.gene73577:intron | 40.0% | |
| TGGACATCAACAACTCACAA+AGG | - | chr1.4:49336188-49336207 | MS.gene73577:intron | 40.0% | |
| TGGTGTTCGATTCCCAATTA+CGG | + | chr1.4:49332851-49332870 | None:intergenic | 40.0% | |
| TGTAGGACAATGTGATCTAC+CGG | - | chr1.4:49336918-49336937 | MS.gene73577:intron | 40.0% | |
| ! | AAAAATAGAGTTTTCGCGGG+TGG | - | chr1.4:49333878-49333897 | MS.gene73577:intron | 40.0% |
| ! | AAACTTTAAAAAGCGGGTGC+GGG | + | chr1.4:49333641-49333660 | None:intergenic | 40.0% |
| ! | AGTAGTGGGAAGTAGATTTC+TGG | + | chr1.4:49334085-49334104 | None:intergenic | 40.0% |
| ! | CGGCGTTTTATAAGATCGAA+CGG | - | chr1.4:49333474-49333493 | MS.gene73577:intron | 40.0% |
| ! | CTTGTTTCTTCTTCCTTCTG+CGG | - | chr1.4:49337058-49337077 | MS.gene73577:intron | 40.0% |
| ! | GGCACTGTGCCATTAAATTT+GGG | - | chr1.4:49333224-49333243 | MS.gene73577:intron | 40.0% |
| ! | GTTGTCTCTTCTTTTTCTGC+AGG | - | chr1.4:49332552-49332571 | MS.gene73577:intron | 40.0% |
| ! | TAATGGCACAGTGCCATTAA+GGG | + | chr1.4:49333219-49333238 | None:intergenic | 40.0% |
| ! | TAGAGGCATATGACAGCTAA+GGG | + | chr1.4:49332992-49333011 | None:intergenic | 40.0% |
| ! | TGGCACTGTGCCATTAAATT+TGG | - | chr1.4:49333223-49333242 | MS.gene73577:intron | 40.0% |
| ! | TTAATGGCACAGTGCCATTA+AGG | + | chr1.4:49333220-49333239 | None:intergenic | 40.0% |
| ! | TTAGAGGCATATGACAGCTA+AGG | + | chr1.4:49332993-49333012 | None:intergenic | 40.0% |
| !! | ATTTTTCCGTATCGGCGTAT+CGG | + | chr1.4:49335288-49335307 | None:intergenic | 40.0% |
| !! | TAGCACTATGGTGCCATTAA+TGG | + | chr1.4:49333335-49333354 | None:intergenic | 40.0% |
| !! | TTCTAGGATGTTGTTAGGCA+TGG | + | chr1.4:49334056-49334075 | None:intergenic | 40.0% |
| AACAGAAAAATTGGCGGAGG+GGG | + | chr1.4:49336529-49336548 | None:intergenic | 45.0% | |
| AACTTGTGCCCTCCCTTAAA+GGG | + | chr1.4:49337926-49337945 | None:intergenic | 45.0% | |
| AAGCCAAGGATTGAGATTGG+AGG | - | chr1.4:49332293-49332312 | MS.gene73577:intron | 45.0% | |
| AAGGATTGAGATTGGAGGAG+AGG | - | chr1.4:49332298-49332317 | MS.gene73577:intron | 45.0% | |
| AATTAGTACTTCCTCCGTCC+CGG | - | chr1.4:49334511-49334530 | MS.gene73577:intron | 45.0% | |
| ACCAAGCCAAGGATTGAGAT+TGG | - | chr1.4:49332290-49332309 | MS.gene73577:intron | 45.0% | |
| ATACTCTCCGGATACGTATC+GGG | - | chr1.4:49335824-49335843 | MS.gene73577:intron | 45.0% | |
| ATATAAGGATCACTTGGGCC+AGG | + | chr1.4:49332598-49332617 | None:intergenic | 45.0% | |
| ATATAGTTTGGGGACGGAGA+CGG | - | chr1.4:49333969-49333988 | MS.gene73577:intron | 45.0% | |
| ATGCAATTGTCTGTGTGGTG+TGG | - | chr1.4:49335609-49335628 | MS.gene73577:intron | 45.0% | |
| ATGTGGCTACACAAGACGTA+CGG | + | chr1.4:49333170-49333189 | None:intergenic | 45.0% | |
| ATGTTAGAGGGGTAGCACTA+TGG | + | chr1.4:49333347-49333366 | None:intergenic | 45.0% | |
| ATGTTGTTAGGCATGGCAAC+GGG | + | chr1.4:49334049-49334068 | None:intergenic | 45.0% | |
| CACAAGTATCCGTGTGTATC+GGG | - | chr1.4:49335746-49335765 | MS.gene73577:intron | 45.0% | |
| CCGTCCCCAAACTATATTAG+AGG | + | chr1.4:49333966-49333985 | None:intergenic | 45.0% | |
| CGCAGAAGGAAGAAGAAACA+AGG | + | chr1.4:49337060-49337079 | None:intergenic | 45.0% | |
| CTGCAACACATGGCAATCAA+TGG | - | chr1.4:49336168-49336187 | MS.gene73577:intron | 45.0% | |
| CTGCTATGGCATTCTTGTCT+TGG | + | chr1.4:49336870-49336889 | None:intergenic | 45.0% | |
| GAAGCCCCGATACTTCAAAA+TGG | + | chr1.4:49335901-49335920 | None:intergenic | 45.0% | |
| GATACTCTCCGGATACGTAT+CGG | - | chr1.4:49335823-49335842 | MS.gene73577:intron | 45.0% | |
| GATACTTCCCGATACGTATC+CGG | + | chr1.4:49335834-49335853 | None:intergenic | 45.0% | |
| GATGTTGTTAGGCATGGCAA+CGG | + | chr1.4:49334050-49334069 | None:intergenic | 45.0% | |
| GGTCAATTATATCGGGACGA+AGG | - | chr1.4:49334723-49334742 | MS.gene73577:intron | 45.0% | |
| GGTGGTAACTGAAGAAGGAA+AGG | + | chr1.4:49332273-49332292 | None:intergenic | 45.0% | |
| GTAGCTACCATGTGAGTAGT+GGG | + | chr1.4:49334099-49334118 | None:intergenic | 45.0% | |
| TCCAATCTCAATCCTTGGCT+TGG | + | chr1.4:49332294-49332313 | None:intergenic | 45.0% | |
| TCCGTATCGTATCTCGTATC+CGG | + | chr1.4:49335253-49335272 | None:intergenic | 45.0% | |
| TCTACTTCCCACTACTCACA+TGG | - | chr1.4:49334089-49334108 | MS.gene73577:intron | 45.0% | |
| TCTCCTCCAATCTCAATCCT+TGG | + | chr1.4:49332299-49332318 | None:intergenic | 45.0% | |
| TGTAGCTACCATGTGAGTAG+TGG | + | chr1.4:49334100-49334119 | None:intergenic | 45.0% | |
| ! | AAAGGGGTGGTGTTAACTTG+TGG | + | chr1.4:49337909-49337928 | None:intergenic | 45.0% |
| ! | AACTTTAAAAAGCGGGTGCG+GGG | + | chr1.4:49333640-49333659 | None:intergenic | 45.0% |
| ! | CTCTTTAACGGGTAGCACTT+TGG | - | chr1.4:49333191-49333210 | MS.gene73577:intron | 45.0% |
| ! | GCTACCCGTTAAAGAGTATG+TGG | + | chr1.4:49333187-49333206 | None:intergenic | 45.0% |
| ! | GGATACGTATCGGGAAGTAT+CGG | - | chr1.4:49335833-49335852 | MS.gene73577:intron | 45.0% |
| ! | TAACTTGTGCCCTCCCTTAA+AGG | + | chr1.4:49337927-49337946 | None:intergenic | 45.0% |
| ! | TTCCTGTTTGCTGCAACACA+TGG | - | chr1.4:49336158-49336177 | MS.gene73577:intron | 45.0% |
| !! | AATCTCAATCCTTGGCTTGG+TGG | + | chr1.4:49332291-49332310 | None:intergenic | 45.0% |
| !! | GATACGTATCGGGAAGTATC+GGG | - | chr1.4:49335834-49335853 | MS.gene73577:intron | 45.0% |
| !! | TAGCACTTTGGTGCCCTTAA+TGG | - | chr1.4:49333203-49333222 | MS.gene73577:intron | 45.0% |
| !! | TGGTGTTAACTTGTGCCCTT+AGG | + | chr1.4:49338072-49338091 | None:intergenic | 45.0% |
| !! | AATAAATAATATTAAAGATA+GGG | + | chr1.4:49338095-49338114 | None:intergenic | 5.0% |
| !! | AATAAATATAAATATATATG+TGG | + | chr1.4:49334352-49334371 | None:intergenic | 5.0% |
| !! | AGTAATAAATATATTAAAAT+AGG | + | chr1.4:49333704-49333723 | None:intergenic | 5.0% |
| !! | TTAATATTATTTATTCATAA+AGG | - | chr1.4:49338100-49338119 | MS.gene73577:intron | 5.0% |
| !!! | AAAAATATAACTTTTTTTTA+GGG | + | chr1.4:49332519-49332538 | None:intergenic | 5.0% |
| ACTTGTGCCCTCCCTTAAAG+GGG | + | chr1.4:49337925-49337944 | None:intergenic | 50.0% | |
| AGATTGGAGGAGAGGACATG+AGG | - | chr1.4:49332306-49332325 | MS.gene73577:intron | 50.0% | |
| AGGATGGTGACAGACATTCC+AGG | - | chr1.4:49338597-49338616 | MS.gene73577:CDS | 50.0% | |
| ATGATAGACCCGGATGTTCC+TGG | - | chr1.4:49332577-49332596 | MS.gene73577:intron | 50.0% | |
| ATGGGTCAGTTATTCCGGGA+CGG | + | chr1.4:49334528-49334547 | None:intergenic | 50.0% | |
| ATTGTCTGTGTGGTGTGGTG+TGG | - | chr1.4:49335614-49335633 | MS.gene73577:intron | 50.0% | |
| CACCGTCGAAGTCTTGGTAT+CGG | + | chr1.4:49335524-49335543 | None:intergenic | 50.0% | |
| CATGAGGTCCCTCTTTACAC+TGG | - | chr1.4:49332322-49332341 | MS.gene73577:intron | 50.0% | |
| CCCGGATACGAGATACGATA+CGG | - | chr1.4:49335249-49335268 | MS.gene73577:intron | 50.0% | |
| CCGTATCGTATCTCGTATCC+GGG | + | chr1.4:49335252-49335271 | None:intergenic | 50.0% | |
| CTTCAGTTACCACCAAGCCA+AGG | - | chr1.4:49332279-49332298 | MS.gene73577:intron | 50.0% | |
| GCAGATCTTCTGCATGAAGC+CGG | + | chr1.4:49336940-49336959 | None:intergenic | 50.0% | |
| GTCCGATACCAAGACTTCGA+CGG | - | chr1.4:49335519-49335538 | MS.gene73577:intron | 50.0% | |
| TCTGCAGGTCATGATAGACC+CGG | - | chr1.4:49332567-49332586 | MS.gene73577:intron | 50.0% | |
| TGCCATGTGTTGCAGCAAAC+AGG | + | chr1.4:49336163-49336182 | None:intergenic | 50.0% | |
| TGTGGCTACACAAGACGTAC+GGG | + | chr1.4:49333169-49333188 | None:intergenic | 50.0% | |
| TGTTGTTAGGCATGGCAACG+GGG | + | chr1.4:49334048-49334067 | None:intergenic | 50.0% | |
| TTGTCTGTGTGGTGTGGTGT+GGG | - | chr1.4:49335615-49335634 | MS.gene73577:intron | 50.0% | |
| ! | AACACCACCCCTTTAAGGGA+GGG | - | chr1.4:49337915-49337934 | MS.gene73577:intron | 50.0% |
| ! | AATAGAGTTTTCGCGGGTGG+AGG | - | chr1.4:49333881-49333900 | MS.gene73577:intron | 50.0% |
| ! | CAGTTTTCACCTGTGAAGCC+CGG | - | chr1.4:49335231-49335250 | MS.gene73577:intron | 50.0% |
| ! | CGGGACGTATCGGAAAGTAT+CGG | - | chr1.4:49335765-49335784 | MS.gene73577:intron | 50.0% |
| ! | CTCACAAAGGTACAGTGACG+AGG | - | chr1.4:49336201-49336220 | MS.gene73577:intron | 50.0% |
| ! | GTCTTGGTATCGGACGACTT+TGG | + | chr1.4:49335514-49335533 | None:intergenic | 50.0% |
| ! | TAACACCACCCCTTTAAGGG+AGG | - | chr1.4:49337914-49337933 | MS.gene73577:intron | 50.0% |
| !! | GGCTTGGTGGTAACTGAAGA+AGG | + | chr1.4:49332278-49332297 | None:intergenic | 50.0% |
| !! | TTGAAGTATCGGGGCTTCAC+AGG | - | chr1.4:49335903-49335922 | MS.gene73577:intron | 50.0% |
| AAAGTGGACGGCGACCACTT+TGG | - | chr1.4:49335547-49335566 | MS.gene73577:intron | 55.0% | |
| AAAGTGGTCGCCGTCCACTT+TGG | + | chr1.4:49335548-49335567 | None:intergenic | 55.0% | |
| ATCTCGTATCCGGGCTTCAC+AGG | + | chr1.4:49335243-49335262 | None:intergenic | 55.0% | |
| CCGATACGTCCCGATACACA+CGG | + | chr1.4:49335758-49335777 | None:intergenic | 55.0% | |
| CCGTGTGTATCGGGACGTAT+CGG | - | chr1.4:49335755-49335774 | MS.gene73577:intron | 55.0% | |
| CGATACCAAGACTTCGACGG+TGG | - | chr1.4:49335522-49335541 | MS.gene73577:intron | 55.0% | |
| GGGACGAGTACATAGAAGCG+GGG | - | chr1.4:49333998-49334017 | MS.gene73577:intron | 55.0% | |
| GGGGACGAGTACATAGAAGC+GGG | - | chr1.4:49333997-49334016 | MS.gene73577:intron | 55.0% | |
| GGGGGACGAGTACATAGAAG+CGG | - | chr1.4:49333996-49334015 | MS.gene73577:intron | 55.0% | |
| TATCGGTGCAGGATACGCAG+GGG | - | chr1.4:49335861-49335880 | MS.gene73577:intron | 55.0% | |
| TCACTTGGGCCAGGAACATC+CGG | + | chr1.4:49332589-49332608 | None:intergenic | 55.0% | |
| TGCAGGATACGCAGGGGATA+CGG | - | chr1.4:49335867-49335886 | MS.gene73577:intron | 55.0% | |
| TTAAAAAGCGGGTGCGGGGT+GGG | + | chr1.4:49333636-49333655 | None:intergenic | 55.0% | |
| TTTAAAAAGCGGGTGCGGGG+TGG | + | chr1.4:49333637-49333656 | None:intergenic | 55.0% | |
| TTTGGCCACCGTCGAAGTCT+TGG | + | chr1.4:49335530-49335549 | None:intergenic | 55.0% | |
| ! | ACTGCACCGATACGCCGATA+CGG | - | chr1.4:49335279-49335298 | MS.gene73577:intron | 55.0% |
| ! | GTATCGGTGCAGGATACGCA+GGG | - | chr1.4:49335860-49335879 | MS.gene73577:intron | 55.0% |
| !! | GGGAAGTATCGGGCAGGTAT+CGG | - | chr1.4:49335844-49335863 | MS.gene73577:intron | 55.0% |
| ACCGGGAGACCTGTTCCCAT+TGG | - | chr1.4:49333914-49333933 | MS.gene73577:intron | 60.0% | |
| AGACCTGTTCCCATTGGGGG+CGG | - | chr1.4:49333920-49333939 | MS.gene73577:intron | 60.0% | |
| CACTTGGGCCAGGAACATCC+GGG | + | chr1.4:49332588-49332607 | None:intergenic | 60.0% | |
| CCCAATGGGAACAGGTCTCC+CGG | + | chr1.4:49333918-49333937 | None:intergenic | 60.0% | |
| CCGGGAGACCTGTTCCCATT+GGG | - | chr1.4:49333915-49333934 | MS.gene73577:intron | 60.0% | |
| CGGGAGACCTGTTCCCATTG+GGG | - | chr1.4:49333916-49333935 | MS.gene73577:intron | 60.0% | |
| GACTTCGACGGTGGCCAAAG+TGG | - | chr1.4:49335531-49335550 | MS.gene73577:intron | 60.0% | |
| GGGAGACCTGTTCCCATTGG+GGG | - | chr1.4:49333917-49333936 | MS.gene73577:intron | 60.0% | |
| GGTCAGTTATTCCGGGACGG+AGG | + | chr1.4:49334525-49334544 | None:intergenic | 60.0% | |
| TCGACGGTGGCCAAAGTGGA+CGG | - | chr1.4:49335535-49335554 | MS.gene73577:intron | 60.0% | |
| TGTGCCCTCCCTTAAAGGGG+TGG | + | chr1.4:49337922-49337941 | None:intergenic | 60.0% | |
| TGTTAGGCATGGCAACGGGG+CGG | + | chr1.4:49334045-49334064 | None:intergenic | 60.0% | |
| TTTGGGGACGGAGACGGAGA+CGG | - | chr1.4:49333975-49333994 | MS.gene73577:intron | 60.0% | |
| ! | AGTTTTCGCGGGTGGAGGCA+GGG | - | chr1.4:49333886-49333905 | MS.gene73577:intron | 60.0% |
| !! | CGTATCGGGAAGTATCGGGC+AGG | - | chr1.4:49335838-49335857 | MS.gene73577:intron | 60.0% |
| !! | GGTATCGGTGCAGGATACGC+AGG | - | chr1.4:49335859-49335878 | MS.gene73577:intron | 60.0% |
| !! | TATCGGGCAGGTATCGGTGC+AGG | - | chr1.4:49335850-49335869 | MS.gene73577:intron | 60.0% |
| ACACTCAACCCCGCCCCCAA+TGG | + | chr1.4:49333933-49333952 | None:intergenic | 65.0% | |
| ACCTGTTCCCATTGGGGGCG+GGG | - | chr1.4:49333922-49333941 | MS.gene73577:intron | 65.0% | |
| CACTCAACCCCGCCCCCAAT+GGG | + | chr1.4:49333932-49333951 | None:intergenic | 65.0% | |
| GACCTGTTCCCATTGGGGGC+GGG | - | chr1.4:49333921-49333940 | MS.gene73577:intron | 65.0% | |
| GGGAACAGGTCTCCCGGTCT+CGG | + | chr1.4:49333912-49333931 | None:intergenic | 65.0% | |
| GTTAGGCATGGCAACGGGGC+GGG | + | chr1.4:49334044-49334063 | None:intergenic | 65.0% | |
| TTGGGGACGGAGACGGAGAC+GGG | - | chr1.4:49333976-49333995 | MS.gene73577:intron | 65.0% | |
| ! | GAGTTTTCGCGGGTGGAGGC+AGG | - | chr1.4:49333885-49333904 | MS.gene73577:intron | 65.0% |
| ACCCCGCCCCCAATGGGAAC+AGG | + | chr1.4:49333926-49333945 | None:intergenic | 70.0% | |
| TGGGGACGGAGACGGAGACG+GGG | - | chr1.4:49333977-49333996 | MS.gene73577:intron | 70.0% | |
| !! | GTGCGGGGCGGGTTTTGTGG+CGG | + | chr1.4:49333608-49333627 | None:intergenic | 70.0% |
| !! | TGCGGGGCGGGTTTTGTGGC+GGG | + | chr1.4:49333607-49333626 | None:intergenic | 70.0% |
| !! | TGGGTGCGGGGCGGGTTTTG+TGG | + | chr1.4:49333611-49333630 | None:intergenic | 70.0% |
| CATGGCAACGGGGCGGGTCG+GGG | + | chr1.4:49334038-49334057 | None:intergenic | 75.0% | |
| GCATGGCAACGGGGCGGGTC+GGG | + | chr1.4:49334039-49334058 | None:intergenic | 75.0% | |
| GGCATGGCAACGGGGCGGGT+CGG | + | chr1.4:49334040-49334059 | None:intergenic | 75.0% | |
| GGGGACGGAGACGGAGACGG+GGG | - | chr1.4:49333978-49333997 | MS.gene73577:intron | 75.0% | |
| GGTGGAGGCAGGGCCGAGAC+CGG | - | chr1.4:49333896-49333915 | MS.gene73577:intron | 75.0% | |
| GTGGAGGCAGGGCCGAGACC+GGG | - | chr1.4:49333897-49333916 | MS.gene73577:intron | 75.0% | |
| !! | CGGGGCGGGTTTTGTGGCGG+GGG | + | chr1.4:49333605-49333624 | None:intergenic | 75.0% |
| !! | GCGGGGCGGGTTTTGTGGCG+GGG | + | chr1.4:49333606-49333625 | None:intergenic | 75.0% |
| !! | GGCGGGTTTTGTGGCGGGGG+CGG | + | chr1.4:49333602-49333621 | None:intergenic | 75.0% |
| ! | AAGCGGGTGCGGGGTGGGCG+TGG | + | chr1.4:49333631-49333650 | None:intergenic | 80.0% |
| ! | AGCGGGTGCGGGGTGGGCGT+GGG | + | chr1.4:49333630-49333649 | None:intergenic | 80.0% |
| ! | CAACGGGGCGGGTCGGGGAC+GGG | + | chr1.4:49334033-49334052 | None:intergenic | 80.0% |
| ! | GCAACGGGGCGGGTCGGGGA+CGG | + | chr1.4:49334034-49334053 | None:intergenic | 80.0% |
| ! | GTGCGGGGTGGGCGTGGGTG+CGG | + | chr1.4:49333625-49333644 | None:intergenic | 80.0% |
| ! | TGCGGGGTGGGCGTGGGTGC+GGG | + | chr1.4:49333624-49333643 | None:intergenic | 80.0% |
| ! | GCGGGGTGGGCGTGGGTGCG+GGG | + | chr1.4:49333623-49333642 | None:intergenic | 85.0% |
| ! | GGGTGGGCGTGGGTGCGGGG+CGG | + | chr1.4:49333620-49333639 | None:intergenic | 85.0% |
| ! | GGTGGGCGTGGGTGCGGGGC+GGG | + | chr1.4:49333619-49333638 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 49332143 | 49338639 | 49332143 | ID=MS.gene73577 |
| chr1.4 | mRNA | 49332143 | 49338639 | 49332143 | ID=MS.gene73577.t1;Parent=MS.gene73577 |
| chr1.4 | exon | 49338439 | 49338639 | 49338439 | ID=MS.gene73577.t1.exon1;Parent=MS.gene73577.t1 |
| chr1.4 | CDS | 49338439 | 49338639 | 49338439 | ID=cds.MS.gene73577.t1;Parent=MS.gene73577.t1 |
| chr1.4 | exon | 49338147 | 49338208 | 49338147 | ID=MS.gene73577.t1.exon2;Parent=MS.gene73577.t1 |
| chr1.4 | CDS | 49338147 | 49338208 | 49338147 | ID=cds.MS.gene73577.t1;Parent=MS.gene73577.t1 |
| chr1.4 | exon | 49332143 | 49332183 | 49332143 | ID=MS.gene73577.t1.exon3;Parent=MS.gene73577.t1 |
| chr1.4 | CDS | 49332143 | 49332183 | 49332143 | ID=cds.MS.gene73577.t1;Parent=MS.gene73577.t1 |
| Gene Sequence |
| Protein sequence |
